AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene59403


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59403.t1 MTR_5g020870 94.761 439 23 0 1 439 1 439 0.0 844
MS.gene59403.t1 MTR_8g077135 60.356 449 166 5 1 438 1 448 1.81e-174 496
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59403.t1 AT3G50910 46.413 446 211 10 1 424 1 440 6.85e-104 316
MS.gene59403.t1 AT5G66480 40.406 443 234 8 1 424 1 432 2.58e-78 250

Find 102 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGAAGCAGAAATGGATTT+GGG 0.276553 5.4:+12758122 MS.gene59403:CDS
GAAATCAATGGGAGAGTATT+AGG 0.317711 5.4:+12756501 MS.gene59403:CDS
ATTGATTTCTCATGTTGTTC+AGG 0.326280 5.4:-12756487 None:intergenic
CAGGATTTGTAAAACTGAAT+TGG 0.328520 5.4:-12755849 None:intergenic
AAGTCTTACCCACTGCTTCC+TGG 0.355664 5.4:-12756793 None:intergenic
GTAAGAAGCAGAAATGGATT+TGG 0.359764 5.4:+12758121 MS.gene59403:CDS
GAAAGAGTAAGAAGCAGAAA+TGG 0.367046 5.4:+12758115 MS.gene59403:CDS
TTAGCTGCATCATCATGTTC+AGG 0.371008 5.4:-12758243 None:intergenic
CTGAGACATCTCATGATTCA+TGG 0.374319 5.4:-12756765 None:intergenic
TGGCCTCAGATGAACTCTTA+TGG 0.378070 5.4:-12755738 None:intergenic
ATACTGCAATAGCATTTGAT+AGG 0.389425 5.4:+12755470 MS.gene59403:CDS
TTGATTTCTCATGTTGTTCA+GGG 0.403000 5.4:-12756486 None:intergenic
CGTTTGTGGTTTATGATGTA+TGG 0.405476 5.4:-12755700 None:intergenic
GTTGGAGCAGGTTTATCAAT+TGG 0.410351 5.4:-12755517 None:intergenic
AATGAGATTGAGTCTATTGA+TGG 0.418044 5.4:+12756433 MS.gene59403:CDS
GCATCATCATGTTCAGGAAC+TGG 0.429188 5.4:-12758237 None:intergenic
AGGTTCATATCAAATACTAT+TGG 0.434224 5.4:+12756638 MS.gene59403:CDS
GGTTCATATCAAATACTATT+GGG 0.445118 5.4:+12756639 MS.gene59403:CDS
TGAAACTCGTTGAATCTTGA+GGG 0.450638 5.4:-12756053 None:intergenic
AAATCCTGAACCTGTTGAAA+AGG 0.460125 5.4:+12755864 MS.gene59403:CDS
CTTTGAGATTGCTCGACTCA+TGG 0.462701 5.4:+12756721 MS.gene59403:CDS
TTTGGTACAGGCATTGAAGT+TGG 0.464899 5.4:-12755535 None:intergenic
CAAGTGCGATCACAGTCGTT+AGG 0.469650 5.4:-12758149 None:intergenic
AGCAGGTTTATCAATTGGCT+TGG 0.472599 5.4:-12755512 None:intergenic
GACGAGGGCCACGACGTTTG+TGG 0.482940 5.4:-12755714 None:intergenic
AAGTGCGATCACAGTCGTTA+GGG 0.488937 5.4:-12758148 None:intergenic
GACTGAGGTAGAGATGGAGA+TGG 0.489945 5.4:+12756676 MS.gene59403:CDS
CTATTGGGAGAGCAACTGTT+AGG 0.492385 5.4:+12756654 MS.gene59403:CDS
GCAACAGCTGTAAGATCTGC+AGG 0.494398 5.4:-12756554 None:intergenic
TGAACAACATGAGAAATCAA+TGG 0.496795 5.4:+12756489 MS.gene59403:CDS
ACCGGAAGTTGTTTCACCTC+GGG 0.498673 5.4:-12755646 None:intergenic
GCATGGTCTTATCTTCCTGC+TGG 0.505695 5.4:+12758186 MS.gene59403:CDS
GACTGTGATCGCACTTGGTA+CGG 0.507194 5.4:+12758155 MS.gene59403:CDS
GAAGATGGTGAATCTACAAC+CGG 0.507259 5.4:-12755664 None:intergenic
TCAATGGGAGAGTATTAGGC+AGG 0.510480 5.4:+12756505 MS.gene59403:CDS
ACAGGCATTGAAGTTGGAGC+AGG 0.510503 5.4:-12755529 None:intergenic
TTTGCAAAGCTACTACTCTC+TGG 0.512035 5.4:-12755961 None:intergenic
TGAAATTCAGCAGTCCTGGC+GGG 0.513546 5.4:+12756121 MS.gene59403:CDS
TGGTCTTATCTTCCTGCTGG+TGG 0.515856 5.4:+12758189 MS.gene59403:CDS
GTGAAACTCGTTGAATCTTG+AGG 0.518963 5.4:-12756054 None:intergenic
GAACAACATGAGAAATCAAT+GGG 0.519282 5.4:+12756490 MS.gene59403:CDS
TTGGTACGGCCGCAGTAGCA+TGG 0.523978 5.4:+12758169 MS.gene59403:CDS
GACTGCTGAATTTCATAGAT+AGG 0.526385 5.4:-12756113 None:intergenic
CTAACGACTGTGATCGCACT+TGG 0.530383 5.4:+12758150 MS.gene59403:CDS
GCATCATAAAACTCCCCGCC+AGG 0.537987 5.4:-12756135 None:intergenic
GTCAACAGCTTTATGTTGCT+AGG 0.541027 5.4:+12756618 MS.gene59403:CDS
TGTTAGGACTGAGGTAGAGA+TGG 0.541729 5.4:+12756670 MS.gene59403:CDS
CAACATAAAGCTGTTGACAT+AGG 0.542420 5.4:-12756613 None:intergenic
TCTATGAAATTCAGCAGTCC+TGG 0.547113 5.4:+12756117 MS.gene59403:CDS
AGGCAGGGGTTGTATCTAGC+AGG 0.548446 5.4:+12756521 MS.gene59403:CDS
ACCCGAGGTGAAACAACTTC+CGG 0.549237 5.4:+12755645 MS.gene59403:CDS
TGGTTTATGATGTATGGTGA+AGG 0.553035 5.4:-12755694 None:intergenic
ATCTGTGCTGCAAGTTCAGT+GGG 0.555292 5.4:+12755820 MS.gene59403:CDS
GCTTTGCAAATGATTTGCCC+AGG 0.559364 5.4:+12755974 MS.gene59403:CDS
TCTTTCTGTAGAACTATCAT+CGG 0.559799 5.4:+12756361 MS.gene59403:intron
AAAATAAGGTTCCTCGTCCT+CGG 0.562260 5.4:+12755599 MS.gene59403:CDS
TGTTGAAAAGGAGTGTTTGA+AGG 0.564872 5.4:+12755876 MS.gene59403:CDS
TAAAGTGCTGGCTTTAACCG+AGG 0.565232 5.4:-12755616 None:intergenic
GGTGAATATGATAGAAGCAA+TGG 0.572513 5.4:+12755910 MS.gene59403:CDS
TCTCTTGACGTATTCAATGC+AGG 0.573129 5.4:-12756006 None:intergenic
TCGGGTGTAGTATAAAGTGC+TGG 0.578523 5.4:-12755628 None:intergenic
TGTTTGAAGGGTGTCTGTGG+TGG 0.579450 5.4:+12755889 MS.gene59403:CDS
GAGGACGACTCTCCACCAGC+AGG 0.582258 5.4:-12758201 None:intergenic
TCAGAGAAACCAGGAAGCAG+TGG 0.585491 5.4:+12756784 MS.gene59403:CDS
AACCGGAAGTTGTTTCACCT+CGG 0.587384 5.4:-12755647 None:intergenic
AGATCTTACAGCTGTTGCTG+AGG 0.587621 5.4:+12756559 MS.gene59403:CDS
AATGCTATTGCAGTATATGT+CGG 0.591259 5.4:-12755463 None:intergenic
GATCTTACAGCTGTTGCTGA+GGG 0.591506 5.4:+12756560 MS.gene59403:CDS
TATCTGTGCTGCAAGTTCAG+TGG 0.592423 5.4:+12755819 MS.gene59403:CDS
GAAATTCAGCAGTCCTGGCG+GGG 0.595787 5.4:+12756122 MS.gene59403:CDS
CAAATGCTCAAAATCTTGAG+AGG 0.598213 5.4:+12755554 MS.gene59403:CDS
GAGTGTTTGAAGGGTGTCTG+TGG 0.598262 5.4:+12755886 MS.gene59403:CDS
GCTGGCTTTAACCGAGGACG+AGG 0.598445 5.4:-12755610 None:intergenic
GATAGAGAAGCGGAAGCAAG+CGG 0.600167 5.4:+12756457 MS.gene59403:CDS
CTTTGCAAATGATTTGCCCA+GGG 0.601901 5.4:+12755975 MS.gene59403:CDS
GGTGAAGGAGGAAATGAAGA+TGG 0.603703 5.4:-12755679 None:intergenic
ACTGACGTGGAAGAAAATGC+AGG 0.607052 5.4:+12756084 MS.gene59403:CDS
TGTTGACATAGGTCTTCCAC+TGG 0.607331 5.4:-12756602 None:intergenic
CAATGGGAGAGTATTAGGCA+GGG 0.613017 5.4:+12756506 MS.gene59403:CDS
TTTATGATGTATGGTGAAGG+AGG 0.613364 5.4:-12755691 None:intergenic
GCAGCTGAATTCTGATCCAG+TGG 0.618658 5.4:+12756586 MS.gene59403:CDS
AATGGGAGAGTATTAGGCAG+GGG 0.619951 5.4:+12756507 MS.gene59403:CDS
AATGGAAGTGAACTGATGAA+TGG 0.624686 5.4:+12755928 MS.gene59403:CDS
TATTGATGGAGATAGAGAAG+CGG 0.624918 5.4:+12756447 MS.gene59403:CDS
AACTGGATGATCTTCTGCGG+AGG 0.628476 5.4:-12758220 None:intergenic
GTTGAAAAGGAGTGTTTGAA+GGG 0.629295 5.4:+12755877 MS.gene59403:CDS
TAGAGATGGCACGACGCGAG+AGG 0.630994 5.4:+12758088 MS.gene59403:intron
ATGAAATTCAGCAGTCCTGG+CGG 0.631034 5.4:+12756120 MS.gene59403:CDS
ATGAACTCTTATGGAGACGA+GGG 0.637716 5.4:-12755729 None:intergenic
CAGAGAAACCAGGAAGCAGT+GGG 0.639211 5.4:+12756785 MS.gene59403:CDS
ATCATAAACCACAAACGTCG+TGG 0.640724 5.4:+12755706 MS.gene59403:CDS
TGAGATGTCTCAGAGAAACC+AGG 0.651421 5.4:+12756775 MS.gene59403:CDS
GATTCATGGTCTCATAACAG+TGG 0.653039 5.4:-12756751 None:intergenic
GATGAACTCTTATGGAGACG+AGG 0.655601 5.4:-12755730 None:intergenic
AGGAACTGGATGATCTTCTG+CGG 0.658775 5.4:-12758223 None:intergenic
CTGACGTGGAAGAAAATGCA+GGG 0.661121 5.4:+12756085 MS.gene59403:CDS
AAGAAGCAGAAATGGATTTG+GGG 0.662895 5.4:+12758123 MS.gene59403:CDS
AAGATAAGACCATGCTACTG+CGG 0.663337 5.4:-12758178 None:intergenic
TCTCCATAAGAGTTCATCTG+AGG 0.680121 5.4:+12755735 MS.gene59403:CDS
TTTCACAAGTAACACTGACG+TGG 0.692204 5.4:+12756071 MS.gene59403:CDS
GAGAGCAACTGTTAGGACTG+AGG 0.700724 5.4:+12756661 MS.gene59403:CDS
AGCACTTTATACTACACCCG+AGG 0.726065 5.4:+12755630 MS.gene59403:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAATATAT+TGG - chr5.4:12757444-12757463 None:intergenic 0.0%
!! AAAAAAAAAAAATATATTGG+TGG - chr5.4:12757441-12757460 None:intergenic 10.0%
!! AAAAAAAAAAATATATTGGT+GGG - chr5.4:12757440-12757459 None:intergenic 10.0%
!! TAAAAAGTTTCAAATAATGA+AGG - chr5.4:12757734-12757753 None:intergenic 15.0%
!!! ATTCCTAGTTATATTTTAAA+TGG - chr5.4:12757286-12757305 None:intergenic 15.0%
!!! AAAAGACCTAAACTTTTATT+AGG + chr5.4:12757312-12757331 MS.gene59403:intron 20.0%
!!! AAGCCATTTAAAATATAACT+AGG + chr5.4:12757280-12757299 MS.gene59403:intron 20.0%
!!! AATGAGATTTAAAATTAAGC+AGG - chr5.4:12758048-12758067 None:intergenic 20.0%
!!! CATATATATGTTTTAGAATC+TGG + chr5.4:12756966-12756985 MS.gene59403:intron 20.0%
!!! TTTGAAACTTTTTATTGTAG+TGG + chr5.4:12757740-12757759 MS.gene59403:intron 20.0%
!!! TTTTAAATGAAGGTATATCT+TGG + chr5.4:12757463-12757482 MS.gene59403:intron 20.0%
! AACAAAACATTCTTTAAGCT+GGG - chr5.4:12758017-12758036 None:intergenic 25.0%
! AACAGAATATCATGTAGTTA+GGG - chr5.4:12757939-12757958 None:intergenic 25.0%
! ACTTACTGTGCAATTAAATT+TGG + chr5.4:12756942-12756961 MS.gene59403:intron 25.0%
! AGGTTCATATCAAATACTAT+TGG + chr5.4:12756638-12756657 MS.gene59403:CDS 25.0%
! GGTTCATATCAAATACTATT+GGG + chr5.4:12756639-12756658 MS.gene59403:CDS 25.0%
! GTAATGCAATCTTTACAAAT+AGG - chr5.4:12757988-12758007 None:intergenic 25.0%
! TTGGTATATCTTAACTGTTA+AGG + chr5.4:12757482-12757501 MS.gene59403:intron 25.0%
!! ACCTAAACTTTTATTAGGAA+AGG + chr5.4:12757317-12757336 MS.gene59403:intron 25.0%
!! GACAATTGTCTAAATTTTTC+CGG - chr5.4:12757365-12757384 None:intergenic 25.0%
!!! ACTGTTAAGGTTTTAAAGAT+TGG + chr5.4:12757495-12757514 MS.gene59403:intron 25.0%
!!! ATTTTTGTCTTGTTTAGAGA+TGG + chr5.4:12758074-12758093 MS.gene59403:intron 25.0%
!!! TCGTTTTTCTACTTCTAATT+AGG + chr5.4:12756863-12756882 MS.gene59403:intron 25.0%
AAGGATACTATCTAGCTATT+AGG - chr5.4:12757800-12757819 None:intergenic 30.0%
AATGAAGGTTTCCATAACAA+CGG - chr5.4:12757719-12757738 None:intergenic 30.0%
AATGAGATTGAGTCTATTGA+TGG + chr5.4:12756433-12756452 MS.gene59403:CDS 30.0%
AATGCTATTGCAGTATATGT+CGG - chr5.4:12755466-12755485 None:intergenic 30.0%
ACAGTAAGTTAACTATTACG+AGG - chr5.4:12756931-12756950 None:intergenic 30.0%
AGGTAGATTTATTCAACTAG+TGG + chr5.4:12756883-12756902 MS.gene59403:intron 30.0%
AGTAAGTTAACTATTACGAG+GGG - chr5.4:12756929-12756948 None:intergenic 30.0%
ATACTGCAATAGCATTTGAT+AGG + chr5.4:12755470-12755489 MS.gene59403:CDS 30.0%
ATCCTATAACACTTGGAAAA+TGG - chr5.4:12757774-12757793 None:intergenic 30.0%
CAGGATTTGTAAAACTGAAT+TGG - chr5.4:12755852-12755871 None:intergenic 30.0%
CAGTAAGTTAACTATTACGA+GGG - chr5.4:12756930-12756949 None:intergenic 30.0%
CATAAAGCAACTGTGATAAT+GGG + chr5.4:12756252-12756271 MS.gene59403:intron 30.0%
GAACAAAACATTCTTTAAGC+TGG - chr5.4:12758018-12758037 None:intergenic 30.0%
GAACAACATGAGAAATCAAT+GGG + chr5.4:12756490-12756509 MS.gene59403:CDS 30.0%
GAACAGAATATCATGTAGTT+AGG - chr5.4:12757940-12757959 None:intergenic 30.0%
GCCTTTCCTAATAAAAGTTT+AGG - chr5.4:12757321-12757340 None:intergenic 30.0%
GCTATGAATTCATACTATCT+TGG - chr5.4:12757559-12757578 None:intergenic 30.0%
GTAATGCAATGTTCACAAAA+AGG - chr5.4:12757849-12757868 None:intergenic 30.0%
TAAGACTTATGTCACATCTT+TGG + chr5.4:12756808-12756827 MS.gene59403:intron 30.0%
TAGGAAAATCCTATAACACT+TGG - chr5.4:12757781-12757800 None:intergenic 30.0%
TCATAAAGCAACTGTGATAA+TGG + chr5.4:12756251-12756270 MS.gene59403:intron 30.0%
TCTTTCTGTAGAACTATCAT+CGG + chr5.4:12756361-12756380 MS.gene59403:intron 30.0%
TGAACAACATGAGAAATCAA+TGG + chr5.4:12756489-12756508 MS.gene59403:CDS 30.0%
TTGATTTCTCATGTTGTTCA+GGG - chr5.4:12756489-12756508 None:intergenic 30.0%
TTGGTTTATGTTGTAGTAAG+AGG + chr5.4:12757679-12757698 MS.gene59403:intron 30.0%
! AAAAAATATATTGGTGGGTG+AGG - chr5.4:12757435-12757454 None:intergenic 30.0%
! AATTGTCTAAATTTTTCCGG+TGG - chr5.4:12757362-12757381 None:intergenic 30.0%
! ATAAAGCAACTGTGATAATG+GGG + chr5.4:12756253-12756272 MS.gene59403:intron 30.0%
! ATTGATTTCTCATGTTGTTC+AGG - chr5.4:12756490-12756509 None:intergenic 30.0%
! ATTGTCTAAATTTTTCCGGT+GGG - chr5.4:12757361-12757380 None:intergenic 30.0%
! TAAGAAGCAGAAATGGATTT+GGG + chr5.4:12758122-12758141 MS.gene59403:CDS 30.0%
! TTATTCAACTAGTGGACATT+TGG + chr5.4:12756891-12756910 MS.gene59403:intron 30.0%
!! TGGGAGTTGTTATTTGTTAT+TGG + chr5.4:12757660-12757679 MS.gene59403:intron 30.0%
!!! ACTTGTGTTTTAGTGCAAAA+AGG - chr5.4:12757819-12757838 None:intergenic 30.0%
AAAATCACAGCAAAGCCATT+AGG - chr5.4:12757915-12757934 None:intergenic 35.0%
AAACAAGGCATAGTTTAAGC+TGG - chr5.4:12757892-12757911 None:intergenic 35.0%
AAATCCTGAACCTGTTGAAA+AGG + chr5.4:12755864-12755883 MS.gene59403:CDS 35.0%
AACAAGGCATAGTTTAAGCT+GGG - chr5.4:12757891-12757910 None:intergenic 35.0%
AATGGAAGTGAACTGATGAA+TGG + chr5.4:12755928-12755947 MS.gene59403:CDS 35.0%
AATTACCATCTATGAAGCAC+AGG - chr5.4:12757392-12757411 None:intergenic 35.0%
CAAATGCTCAAAATCTTGAG+AGG + chr5.4:12755554-12755573 MS.gene59403:CDS 35.0%
CAACATAAAGCTGTTGACAT+AGG - chr5.4:12756616-12756635 None:intergenic 35.0%
CATAGTTTAAGCTGGGAAAA+AGG - chr5.4:12757884-12757903 None:intergenic 35.0%
CGTTTGTGGTTTATGATGTA+TGG - chr5.4:12755703-12755722 None:intergenic 35.0%
CTGTCCAAAAAGAATGTTTC+TGG + chr5.4:12755766-12755785 MS.gene59403:CDS 35.0%
GAAAGAGTAAGAAGCAGAAA+TGG + chr5.4:12758115-12758134 MS.gene59403:CDS 35.0%
GACTGCTGAATTTCATAGAT+AGG - chr5.4:12756116-12756135 None:intergenic 35.0%
GATATGTTCTGATGTCTCTT+GGG + chr5.4:12757641-12757660 MS.gene59403:intron 35.0%
GGTGAATATGATAGAAGCAA+TGG + chr5.4:12755910-12755929 MS.gene59403:CDS 35.0%
TAACACTTGGAAAATGGAGT+TGG - chr5.4:12757768-12757787 None:intergenic 35.0%
TATTGATGGAGATAGAGAAG+CGG + chr5.4:12756447-12756466 MS.gene59403:CDS 35.0%
TGAAACTCGTTGAATCTTGA+GGG - chr5.4:12756056-12756075 None:intergenic 35.0%
TGATATGTTCTGATGTCTCT+TGG + chr5.4:12757640-12757659 MS.gene59403:intron 35.0%
TGCATTTGCGACAGAAAAAT+TGG - chr5.4:12756190-12756209 None:intergenic 35.0%
TGGTTTATGATGTATGGTGA+AGG - chr5.4:12755697-12755716 None:intergenic 35.0%
TGTGCTTCATAGATGGTAAT+TGG + chr5.4:12757391-12757410 MS.gene59403:intron 35.0%
TTTATGATGTATGGTGAAGG+AGG - chr5.4:12755694-12755713 None:intergenic 35.0%
! AAGAAGCAGAAATGGATTTG+GGG + chr5.4:12758123-12758142 MS.gene59403:CDS 35.0%
! AGATTTTGAGCATTTGGTAC+AGG - chr5.4:12755550-12755569 None:intergenic 35.0%
! CTCACCAGAAACATTCTTTT+TGG - chr5.4:12755773-12755792 None:intergenic 35.0%
! CTCCATTTTCCAAGTGTTAT+AGG + chr5.4:12757769-12757788 MS.gene59403:intron 35.0%
! CTCTCAAGATTTTGAGCATT+TGG - chr5.4:12755556-12755575 None:intergenic 35.0%
! GTAAGAAGCAGAAATGGATT+TGG + chr5.4:12758121-12758140 MS.gene59403:CDS 35.0%
! TGAGTGATGGTTAAGCTTTT+CGG - chr5.4:12757223-12757242 None:intergenic 35.0%
! TTCAAACACTCCTTTTCAAC+AGG - chr5.4:12755877-12755896 None:intergenic 35.0%
!! AACTATGCCTTGTTTCCTAA+TGG + chr5.4:12757897-12757916 MS.gene59403:intron 35.0%
!! CAAAAAGAATGTTTCTGGTG+AGG + chr5.4:12755771-12755790 MS.gene59403:CDS 35.0%
!! GAAATCAATGGGAGAGTATT+AGG + chr5.4:12756501-12756520 MS.gene59403:CDS 35.0%
!! GTTGAAAAGGAGTGTTTGAA+GGG + chr5.4:12755877-12755896 MS.gene59403:CDS 35.0%
!! TCGGGGATAGTTGTTTTATT+AGG + chr5.4:12757052-12757071 MS.gene59403:intron 35.0%
!! TGTTGAAAAGGAGTGTTTGA+AGG + chr5.4:12755876-12755895 MS.gene59403:CDS 35.0%
AAAATAAGGTTCCTCGTCCT+CGG + chr5.4:12755599-12755618 MS.gene59403:CDS 40.0%
AAGATAAGACCATGCTACTG+CGG - chr5.4:12758181-12758200 None:intergenic 40.0%
AGATTGCTTCAGTCTGTGAA+TGG + chr5.4:12757117-12757136 MS.gene59403:intron 40.0%
AGCAAAGCCATTAGGAAACA+AGG - chr5.4:12757907-12757926 None:intergenic 40.0%
AGCAGGTTTATCAATTGGCT+TGG - chr5.4:12755515-12755534 None:intergenic 40.0%
AGTCAACACATACACTCTTG+TGG - chr5.4:12756997-12757016 None:intergenic 40.0%
ATCATAAACCACAAACGTCG+TGG + chr5.4:12755706-12755725 MS.gene59403:CDS 40.0%
ATGAACTCTTATGGAGACGA+GGG - chr5.4:12755732-12755751 None:intergenic 40.0%
CACTCATATATAGCCTGACA+TGG + chr5.4:12757237-12757256 MS.gene59403:intron 40.0%
CATATATAGCCTGACATGGA+AGG + chr5.4:12757241-12757260 MS.gene59403:intron 40.0%
CATTCTTTAAGCTGGGAACA+AGG - chr5.4:12758010-12758029 None:intergenic 40.0%
CGACAGAAAAATTGGAGTGA+AGG - chr5.4:12756182-12756201 None:intergenic 40.0%
CTGAGACATCTCATGATTCA+TGG - chr5.4:12756768-12756787 None:intergenic 40.0%
GAAGATGGTGAATCTACAAC+CGG - chr5.4:12755667-12755686 None:intergenic 40.0%
GATTCATGGTCTCATAACAG+TGG - chr5.4:12756754-12756773 None:intergenic 40.0%
GATTGCTTCAGTCTGTGAAT+GGG + chr5.4:12757118-12757137 MS.gene59403:intron 40.0%
GCTTCATAGATGGTAATTGG+TGG + chr5.4:12757394-12757413 MS.gene59403:intron 40.0%
GTCAGGCTATATATGAGTGA+TGG - chr5.4:12757236-12757255 None:intergenic 40.0%
GTGAAACTCGTTGAATCTTG+AGG - chr5.4:12756057-12756076 None:intergenic 40.0%
GTTGGAGCAGGTTTATCAAT+TGG - chr5.4:12755520-12755539 None:intergenic 40.0%
TCTATGAAATTCAGCAGTCC+TGG + chr5.4:12756117-12756136 MS.gene59403:CDS 40.0%
TCTCCATAAGAGTTCATCTG+AGG + chr5.4:12755735-12755754 MS.gene59403:CDS 40.0%
TCTCTTGACGTATTCAATGC+AGG - chr5.4:12756009-12756028 None:intergenic 40.0%
TGCTCCACCTGTGAAAAATA+AGG + chr5.4:12755585-12755604 MS.gene59403:CDS 40.0%
TTAGCTGCATCATCATGTTC+AGG - chr5.4:12758246-12758265 None:intergenic 40.0%
TTTCACAAGTAACACTGACG+TGG + chr5.4:12756071-12756090 MS.gene59403:CDS 40.0%
TTTCCATAACAACGGCATCT+GGG - chr5.4:12757711-12757730 None:intergenic 40.0%
TTTGCAAAGCTACTACTCTC+TGG - chr5.4:12755964-12755983 None:intergenic 40.0%
! AAATATATTGGTGGGTGAGG+AGG - chr5.4:12757432-12757451 None:intergenic 40.0%
! AATATATTGGTGGGTGAGGA+GGG - chr5.4:12757431-12757450 None:intergenic 40.0%
! ATTCTTTTTGGACAGCACAC+TGG - chr5.4:12755761-12755780 None:intergenic 40.0%
! CTTTGCAAATGATTTGCCCA+GGG + chr5.4:12755975-12755994 MS.gene59403:CDS 40.0%
! GTCAACAGCTTTATGTTGCT+AGG + chr5.4:12756618-12756637 MS.gene59403:CDS 40.0%
!! GAGTTTTATGATGCTTGGGA+AGG + chr5.4:12756144-12756163 MS.gene59403:CDS 40.0%
!! TTTGGTACAGGCATTGAAGT+TGG - chr5.4:12755538-12755557 None:intergenic 40.0%
!!! CGAGGAACCTTATTTTTCAC+AGG - chr5.4:12755595-12755614 None:intergenic 40.0%
!!! GGAACCTTATTTTTCACAGG+TGG - chr5.4:12755592-12755611 None:intergenic 40.0%
AAGTGCGATCACAGTCGTTA+GGG - chr5.4:12758151-12758170 None:intergenic 45.0%
ACATGTTGGGCACTCAAAAC+TGG + chr5.4:12757175-12757194 MS.gene59403:intron 45.0%
ACTGACGTGGAAGAAAATGC+AGG + chr5.4:12756084-12756103 MS.gene59403:CDS 45.0%
AGATCTTACAGCTGTTGCTG+AGG + chr5.4:12756559-12756578 MS.gene59403:CDS 45.0%
AGCACTTTATACTACACCCG+AGG + chr5.4:12755630-12755649 MS.gene59403:CDS 45.0%
AGGAACTGGATGATCTTCTG+CGG - chr5.4:12758226-12758245 None:intergenic 45.0%
AGTTCAGACTCGCATATCCA+TGG + chr5.4:12757075-12757094 MS.gene59403:intron 45.0%
ATCTGTGCTGCAAGTTCAGT+GGG + chr5.4:12755820-12755839 MS.gene59403:CDS 45.0%
ATGAAATTCAGCAGTCCTGG+CGG + chr5.4:12756120-12756139 MS.gene59403:CDS 45.0%
CAAATGCACGTGGCAATAGT+AGG + chr5.4:12756202-12756221 MS.gene59403:intron 45.0%
CATGTTGGGCACTCAAAACT+GGG + chr5.4:12757176-12757195 MS.gene59403:intron 45.0%
CTATTGGGAGAGCAACTGTT+AGG + chr5.4:12756654-12756673 MS.gene59403:CDS 45.0%
CTGACGTGGAAGAAAATGCA+GGG + chr5.4:12756085-12756104 MS.gene59403:CDS 45.0%
CTGTTCCTGTGCTTCATAGA+TGG + chr5.4:12757384-12757403 MS.gene59403:intron 45.0%
GAAAATACCATGTCCTGCCA+TGG - chr5.4:12757095-12757114 None:intergenic 45.0%
GATCTTACAGCTGTTGCTGA+GGG + chr5.4:12756560-12756579 MS.gene59403:CDS 45.0%
GATGAACTCTTATGGAGACG+AGG - chr5.4:12755733-12755752 None:intergenic 45.0%
GCATCATCATGTTCAGGAAC+TGG - chr5.4:12758240-12758259 None:intergenic 45.0%
GGTGAAGGAGGAAATGAAGA+TGG - chr5.4:12755682-12755701 None:intergenic 45.0%
GTTTCCATAACAACGGCATC+TGG - chr5.4:12757712-12757731 None:intergenic 45.0%
TATCTGTGCTGCAAGTTCAG+TGG + chr5.4:12755819-12755838 MS.gene59403:CDS 45.0%
TCGGGTGTAGTATAAAGTGC+TGG - chr5.4:12755631-12755650 None:intergenic 45.0%
TGAGATGTCTCAGAGAAACC+AGG + chr5.4:12756775-12756794 MS.gene59403:CDS 45.0%
TGATGCTTGGGAAGGTAAAC+TGG + chr5.4:12756152-12756171 MS.gene59403:intron 45.0%
TGGCCTCAGATGAACTCTTA+TGG - chr5.4:12755741-12755760 None:intergenic 45.0%
TGTTAGGACTGAGGTAGAGA+TGG + chr5.4:12756670-12756689 MS.gene59403:CDS 45.0%
TGTTGACATAGGTCTTCCAC+TGG - chr5.4:12756605-12756624 None:intergenic 45.0%
TTCCATAACAACGGCATCTG+GGG - chr5.4:12757710-12757729 None:intergenic 45.0%
! AACCGGAAGTTGTTTCACCT+CGG - chr5.4:12755650-12755669 None:intergenic 45.0%
! CACTCCTTTTCAACAGGTTC+AGG - chr5.4:12755871-12755890 None:intergenic 45.0%
! GCTTTGCAAATGATTTGCCC+AGG + chr5.4:12755974-12755993 MS.gene59403:CDS 45.0%
! TTTTCTGTCGCAAATGCACG+TGG + chr5.4:12756192-12756211 MS.gene59403:intron 45.0%
!! AATGGGAGAGTATTAGGCAG+GGG + chr5.4:12756507-12756526 MS.gene59403:CDS 45.0%
!! CAATGGGAGAGTATTAGGCA+GGG + chr5.4:12756506-12756525 MS.gene59403:CDS 45.0%
!! CGGGGAGTTTTATGATGCTT+GGG + chr5.4:12756140-12756159 MS.gene59403:CDS 45.0%
!! CTTTGAGATTGCTCGACTCA+TGG + chr5.4:12756721-12756740 MS.gene59403:CDS 45.0%
!! TAAAGTGCTGGCTTTAACCG+AGG - chr5.4:12755619-12755638 None:intergenic 45.0%
!! TCAATGGGAGAGTATTAGGC+AGG + chr5.4:12756505-12756524 MS.gene59403:CDS 45.0%
!!! AATGCAGGAGCATTTTCCCT+GGG - chr5.4:12755994-12756013 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTAAATGA+AGG + chr5.4:12757453-12757472 MS.gene59403:intron 5.0%
AACACCCGACTGACACATGT+TGG + chr5.4:12757161-12757180 MS.gene59403:intron 50.0%
AACCCCAGATGCCGTTGTTA+TGG + chr5.4:12757705-12757724 MS.gene59403:intron 50.0%
AACTATCCCCGACACAGCTA+CGG - chr5.4:12757044-12757063 None:intergenic 50.0%
AACTGGATGATCTTCTGCGG+AGG - chr5.4:12758223-12758242 None:intergenic 50.0%
AAGTCTTACCCACTGCTTCC+TGG - chr5.4:12756796-12756815 None:intergenic 50.0%
ACACCCGACTGACACATGTT+GGG + chr5.4:12757162-12757181 MS.gene59403:intron 50.0%
ACCCGAGGTGAAACAACTTC+CGG + chr5.4:12755645-12755664 MS.gene59403:CDS 50.0%
AGTGCCCAACATGTGTCAGT+CGG - chr5.4:12757169-12757188 None:intergenic 50.0%
CAAGTGCGATCACAGTCGTT+AGG - chr5.4:12758152-12758171 None:intergenic 50.0%
CAGAGAAACCAGGAAGCAGT+GGG + chr5.4:12756785-12756804 MS.gene59403:CDS 50.0%
CAGTTGCATCCTTCCATGTC+AGG - chr5.4:12757253-12757272 None:intergenic 50.0%
CTAACGACTGTGATCGCACT+TGG + chr5.4:12758150-12758169 MS.gene59403:CDS 50.0%
GACTGAGGTAGAGATGGAGA+TGG + chr5.4:12756676-12756695 MS.gene59403:CDS 50.0%
GACTGTGATCGCACTTGGTA+CGG + chr5.4:12758155-12758174 MS.gene59403:CDS 50.0%
GAGAGCAACTGTTAGGACTG+AGG + chr5.4:12756661-12756680 MS.gene59403:CDS 50.0%
GATAGAGAAGCGGAAGCAAG+CGG + chr5.4:12756457-12756476 MS.gene59403:CDS 50.0%
GCAACAGCTGTAAGATCTGC+AGG - chr5.4:12756557-12756576 None:intergenic 50.0%
GCAGCTGAATTCTGATCCAG+TGG + chr5.4:12756586-12756605 MS.gene59403:CDS 50.0%
GTCAATAGCCGTAGCTGTGT+CGG + chr5.4:12757033-12757052 MS.gene59403:intron 50.0%
GTGGGTCACAACGCATAAGA+CGG - chr5.4:12757343-12757362 None:intergenic 50.0%
TCAATAGCCGTAGCTGTGTC+GGG + chr5.4:12757034-12757053 MS.gene59403:intron 50.0%
TCAGAGAAACCAGGAAGCAG+TGG + chr5.4:12756784-12756803 MS.gene59403:CDS 50.0%
TCTTATGCGTTGTGACCCAC+CGG + chr5.4:12757343-12757362 MS.gene59403:intron 50.0%
TGAAATTCAGCAGTCCTGGC+GGG + chr5.4:12756121-12756140 MS.gene59403:CDS 50.0%
! ACCGGAAGTTGTTTCACCTC+GGG - chr5.4:12755649-12755668 None:intergenic 50.0%
!! ACAGGCATTGAAGTTGGAGC+AGG - chr5.4:12755532-12755551 None:intergenic 50.0%
!! GAGTGTTTGAAGGGTGTCTG+TGG + chr5.4:12755886-12755905 MS.gene59403:CDS 50.0%
!! GCATGGTCTTATCTTCCTGC+TGG + chr5.4:12758186-12758205 MS.gene59403:CDS 50.0%
!! GCGGGGAGTTTTATGATGCT+TGG + chr5.4:12756139-12756158 MS.gene59403:CDS 50.0%
!! TGGTCTTATCTTCCTGCTGG+TGG + chr5.4:12758189-12758208 MS.gene59403:CDS 50.0%
!! TGTTTGAAGGGTGTCTGTGG+TGG + chr5.4:12755889-12755908 MS.gene59403:CDS 50.0%
!!! CAATGCAGGAGCATTTTCCC+TGG - chr5.4:12755995-12756014 None:intergenic 50.0%
AGGCAGGGGTTGTATCTAGC+AGG + chr5.4:12756521-12756540 MS.gene59403:CDS 55.0%
CAATAGCCGTAGCTGTGTCG+GGG + chr5.4:12757035-12757054 MS.gene59403:intron 55.0%
CAGACTCGCATATCCATGGC+AGG + chr5.4:12757079-12757098 MS.gene59403:intron 55.0%
CGCATATCCATGGCAGGACA+TGG + chr5.4:12757085-12757104 MS.gene59403:intron 55.0%
GAAATTCAGCAGTCCTGGCG+GGG + chr5.4:12756122-12756141 MS.gene59403:CDS 55.0%
GCATCATAAAACTCCCCGCC+AGG - chr5.4:12756138-12756157 None:intergenic 55.0%
GTGCCCAACATGTGTCAGTC+GGG - chr5.4:12757168-12757187 None:intergenic 55.0%
TAGAGATGGCACGACGCGAG+AGG + chr5.4:12758088-12758107 MS.gene59403:intron 60.0%
TTGGTACGGCCGCAGTAGCA+TGG + chr5.4:12758169-12758188 MS.gene59403:CDS 60.0%
!! GCTGGCTTTAACCGAGGACG+AGG - chr5.4:12755613-12755632 None:intergenic 60.0%
GACGAGGGCCACGACGTTTG+TGG - chr5.4:12755717-12755736 None:intergenic 65.0%
GAGGACGACTCTCCACCAGC+AGG - chr5.4:12758204-12758223 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 12755460 12758269 12755460 ID=MS.gene59403
chr5.4 mRNA 12755460 12758269 12755460 ID=MS.gene59403.t1;Parent=MS.gene59403
chr5.4 exon 12755460 12756165 12755460 ID=MS.gene59403.t1.exon1;Parent=MS.gene59403.t1
chr5.4 CDS 12755460 12756165 12755460 ID=cds.MS.gene59403.t1;Parent=MS.gene59403.t1
chr5.4 exon 12756372 12756806 12756372 ID=MS.gene59403.t1.exon2;Parent=MS.gene59403.t1
chr5.4 CDS 12756372 12756806 12756372 ID=cds.MS.gene59403.t1;Parent=MS.gene59403.t1
chr5.4 exon 12758091 12758269 12758091 ID=MS.gene59403.t1.exon3;Parent=MS.gene59403.t1
chr5.4 CDS 12758091 12758269 12758091 ID=cds.MS.gene59403.t1;Parent=MS.gene59403.t1
Gene Sequence

>MS.gene59403

ATGCCGACATATACTGCAATAGCATTTGATAGGTTTTTAGAGACTAGAGCTTCCAAGCCAATTGATAAACCTGCTCCAACTTCAATGCCTGTACCAAATGCTCAAAATCTTGAGAGGACTACTAGTGCTCCACCTGTGAAAAATAAGGTTCCTCGTCCTCGGTTAAAGCCAGCACTTTATACTACACCCGAGGTGAAACAACTTCCGGTTGTAGATTCACCATCTTCATTTCCTCCTTCACCATACATCATAAACCACAAACGTCGTGGCCCTCGTCTCCATAAGAGTTCATCTGAGGCCAGTGTGCTGTCCAAAAAGAATGTTTCTGGTGAGGAAAAAGTTGATGATAAGAGCTTTGATATCTGTGCTGCAAGTTCAGTGGGTGATCTCCAATTCAGTTTTACAAATCCTGAACCTGTTGAAAAGGAGTGTTTGAAGGGTGTCTGTGGTGGTGAATATGATAGAAGCAATGGAAGTGAACTGATGAATGGACACAAAGAACCAGAGAGTAGTAGCTTTGCAAATGATTTGCCCAGGGAAAATGCTCCTGCATTGAATACGTCAAGAGATACAGATATTGAAGACTTCTTTGACCCTCAAGATTCAACGAGTTTCACAAGTAACACTGACGTGGAAGAAAATGCAGGGACAGACCTATCTATGAAATTCAGCAGTCCTGGCGGGGAGTTTTATGATGCTTGGGAAGGTAAACTGGATTACCTTCACTCCAATTTTTCTGTCGCAAATGCACGTGGCAATAGTAGGATTTTTTTTAAATTCTTCTCTCAATGTCATAAAGCAACTGTGATAATGGGGATATCTAAGTTTTTCATGAATATATCAATCTTATTGCATATTTCGTATTTCTTATTTCATGTCATATTAGCTTACTTGTTTCTTCTCTTTCTGTAGAACTATCATCGGAAGCTGCTACTCAAAATTCTGCATCTGATGTTGAAGCTGAATTGCGTGAAATGAGATTGAGTCTATTGATGGAGATAGAGAAGCGGAAGCAAGCGGAAGAATCCCTGAACAACATGAGAAATCAATGGGAGAGTATTAGGCAGGGGTTGTATCTAGCAGGAATCGTTTTGCCTGCAGATCTTACAGCTGTTGCTGAGGGTGAGCAGCTGAATTCTGATCCAGTGGAAGACCTATGTCAACAGCTTTATGTTGCTAGGTTCATATCAAATACTATTGGGAGAGCAACTGTTAGGACTGAGGTAGAGATGGAGATGGAAACTCAACTAGAGTCAAAGAACTTTGAGATTGCTCGACTCATGGAACGTCTCCACTGTTATGAGACCATGAATCATGAGATGTCTCAGAGAAACCAGGAAGCAGTGGGTAAGACTTATGTCACATCTTTGGTCTCTTAATTGTTTTGATTGTGCGAACATTAATCGTTTTTCTACTTCTAATTAGGTAGATTTATTCAACTAGTGGACATTTGGTTTGTCATATTTCCCCTCGTAATAGTTAACTTACTGTGCAATTAAATTTGGTCATATATATGTTTTAGAATCTGGATAGACCACAAGAGTGTATGTGTTGACTGAATATCATGTATTTTGTCAATAGCCGTAGCTGTGTCGGGGATAGTTGTTTTATTAGGAGTTCAGACTCGCATATCCATGGCAGGACATGGTATTTTCTTAGATTGCTTCAGTCTGTGAATGGGTGTGATCGCACTTCTTAATCAACACCCGACTGACACATGTTGGGCACTCAAAACTGGGCTGCTAATTTGTTTTTTTCTTCCGAAAAGCTTAACCATCACTCATATATAGCCTGACATGGAAGGATGCAACTGTTCAAAAAAGCCATTTAAAATATAACTAGGAATGATTTTAAAAGACCTAAACTTTTATTAGGAAAGGCCGTCTTATGCGTTGTGACCCACCGGAAAAATTTAGACAATTGTCTGTTCCTGTGCTTCATAGATGGTAATTGGTGGTATAAAATTAGCCCTCCTCACCCACCAATATATTTTTTTTTTTTTTTTTTAAATGAAGGTATATCTTGGTATATCTTAACTGTTAAGGTTTTAAAGATTGGAAAAAAATTGATTTTTTGTGATAATAAAGAACTAAATGCCAAGATAGTATGAATTCATAGCTTAAAGCTTGCATTGAAGTCAGTGCTATAATATGCAAAATCACGTTATATATTTTAGTTATTGATATGTTCTGATGTCTCTTGGGAGTTGTTATTTGTTATTGGTTTATGTTGTAGTAAGAGGACAAACCCCAGATGCCGTTGTTATGGAAACCTTCATTATTTGAAACTTTTTATTGTAGTGGATCCAACTCCATTTTCCAAGTGTTATAGGATTTTCCTAATAGCTAGATAGTATCCTTTTTGCACTAAAACACAAGTATAACATCCTTTTTGTGAACATTGCATTACATAGTTAAATTACCTTTTTCCCAGCTTAAACTATGCCTTGTTTCCTAATGGCTTTGCTGTGATTTTTCCCTAACTACATGATATTCTGTTCGCACACAAACACAAAAGTGTAACATCCTATTTGTAAAGATTGCATTACCTTGTTCCCAGCTTAAAGAATGTTTTGTTCTAATGAACCTGCTTAATTTTAAATCTCATTTACATGATTTTTGTCTTGTTTAGAGATGGCACGACGCGAGAGGCAAAGAAAGAGTAAGAAGCAGAAATGGATTTGGGGTTCCCTAACGACTGTGATCGCACTTGGTACGGCCGCAGTAGCATGGTCTTATCTTCCTGCTGGTGGAGAGTCGTCCTCCGCAGAAGATCATCCAGTTCCTGAACATGATGATGCAGCTAAATAA

Protein sequence

>MS.gene59403.t1

MPTYTAIAFDRFLETRASKPIDKPAPTSMPVPNAQNLERTTSAPPVKNKVPRPRLKPALYTTPEVKQLPVVDSPSSFPPSPYIINHKRRGPRLHKSSSEASVLSKKNVSGEEKVDDKSFDICAASSVGDLQFSFTNPEPVEKECLKGVCGGEYDRSNGSELMNGHKEPESSSFANDLPRENAPALNTSRDTDIEDFFDPQDSTSFTSNTDVEENAGTDLSMKFSSPGGEFYDAWEELSSEAATQNSASDVEAELREMRLSLLMEIEKRKQAEESLNNMRNQWESIRQGLYLAGIVLPADLTAVAEGEQLNSDPVEDLCQQLYVARFISNTIGRATVRTEVEMEMETQLESKNFEIARLMERLHCYETMNHEMSQRNQEAVEMARRERQRKSKKQKWIWGSLTTVIALGTAAVAWSYLPAGGESSSAEDHPVPEHDDAAK