Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60770.t1 | GAU40029.1 | 50.9 | 161 | 67 | 3 | 85 | 237 | 8 | 164 | 1.50E-30 | 143.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60770.t1 | Q9SRH9 | 48.1 | 79 | 36 | 1 | 156 | 229 | 48 | 126 | 9.3e-13 | 75.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60770.t1 | A0A2Z6P865 | 50.9 | 161 | 67 | 3 | 85 | 237 | 8 | 164 | 1.1e-30 | 143.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene60770.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene60770 | MS.gene80088 | PPI |
MS.gene80087 | MS.gene60770 | PPI |
MS.gene60770 | MS.gene012752 | PPI |
MS.gene60770 | MS.gene91422 | PPI |
MS.gene80088 | MS.gene60770 | PPI |
MS.gene60770 | MS.gene93864 | PPI |
MS.gene60770 | MS.gene91421 | PPI |
MS.gene60770 | MS.gene93863 | PPI |
MS.gene60770 | MS.gene93862 | PPI |
MS.gene91421 | MS.gene60770 | PPI |
MS.gene60770 | MS.gene95089 | PPI |
MS.gene60770 | MS.gene80089 | PPI |
MS.gene91330 | MS.gene60770 | PPI |
MS.gene85574 | MS.gene60770 | PPI |
MS.gene60770 | MS.gene99644 | PPI |
MS.gene60770 | MS.gene80087 | PPI |
MS.gene99644 | MS.gene60770 | PPI |
MS.gene60770 | MS.gene71600 | PPI |
MS.gene80089 | MS.gene60770 | PPI |
MS.gene60770 | MS.gene99643 | PPI |
MS.gene60770 | MS.gene43439 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60770.t1 | MTR_4g133470 | 42.453 | 212 | 83 | 9 | 59 | 239 | 48 | 251 | 2.57e-31 | 116 |
MS.gene60770.t1 | MTR_4g133300 | 41.827 | 208 | 90 | 7 | 59 | 239 | 48 | 251 | 4.90e-31 | 115 |
MS.gene60770.t1 | MTR_1g109550 | 44.828 | 145 | 68 | 4 | 73 | 210 | 3 | 142 | 7.51e-27 | 101 |
MS.gene60770.t1 | MTR_3g006185 | 42.697 | 178 | 76 | 6 | 79 | 235 | 2 | 174 | 1.23e-26 | 101 |
MS.gene60770.t1 | MTR_3g006125 | 42.458 | 179 | 76 | 7 | 79 | 235 | 83 | 256 | 5.00e-24 | 97.1 |
MS.gene60770.t1 | MTR_1g105955 | 43.411 | 129 | 51 | 4 | 122 | 228 | 35 | 163 | 2.65e-23 | 93.2 |
MS.gene60770.t1 | MTR_1g105955 | 34.839 | 155 | 80 | 3 | 17 | 158 | 17 | 163 | 8.83e-19 | 81.3 |
MS.gene60770.t1 | MTR_1g105955 | 52.381 | 63 | 25 | 1 | 166 | 223 | 17 | 79 | 5.84e-13 | 65.5 |
MS.gene60770.t1 | MTR_1g104960 | 38.095 | 168 | 84 | 4 | 85 | 236 | 12 | 175 | 4.99e-22 | 89.7 |
MS.gene60770.t1 | MTR_3g006065 | 46.377 | 138 | 51 | 5 | 128 | 242 | 43 | 180 | 1.10e-21 | 89.4 |
MS.gene60770.t1 | MTR_3g006150 | 49.153 | 118 | 44 | 4 | 128 | 229 | 43 | 160 | 2.86e-21 | 87.4 |
MS.gene60770.t1 | MTR_3g006150 | 34.320 | 169 | 78 | 7 | 12 | 159 | 4 | 160 | 6.52e-11 | 59.7 |
MS.gene60770.t1 | MTR_3g006105 | 40.556 | 180 | 80 | 7 | 79 | 236 | 2 | 176 | 5.43e-21 | 87.4 |
MS.gene60770.t1 | MTR_1g104980 | 34.615 | 156 | 88 | 4 | 90 | 240 | 3 | 149 | 2.97e-16 | 74.3 |
MS.gene60770.t1 | MTR_1g105960 | 54.412 | 68 | 26 | 1 | 166 | 228 | 2 | 69 | 3.67e-16 | 72.4 |
MS.gene60770.t1 | MTR_1g105960 | 36.792 | 106 | 48 | 2 | 90 | 195 | 5 | 91 | 1.75e-12 | 62.4 |
MS.gene60770.t1 | MTR_7g013380 | 32.227 | 211 | 104 | 9 | 66 | 239 | 61 | 269 | 4.13e-16 | 76.3 |
MS.gene60770.t1 | MTR_5g036670 | 52.703 | 74 | 30 | 1 | 161 | 229 | 39 | 112 | 2.89e-15 | 75.5 |
MS.gene60770.t1 | MTR_5g036670 | 32.903 | 155 | 84 | 3 | 85 | 223 | 42 | 192 | 9.54e-15 | 73.9 |
MS.gene60770.t1 | MTR_1g093310 | 51.282 | 78 | 37 | 1 | 157 | 234 | 1 | 77 | 3.35e-15 | 68.9 |
MS.gene60770.t1 | MTR_1g100260 | 40.625 | 96 | 50 | 1 | 71 | 159 | 2 | 97 | 4.31e-15 | 70.1 |
MS.gene60770.t1 | MTR_1g104940 | 46.429 | 84 | 40 | 2 | 156 | 234 | 5 | 88 | 5.66e-15 | 69.7 |
MS.gene60770.t1 | MTR_1g105010 | 46.575 | 73 | 34 | 1 | 161 | 228 | 12 | 84 | 9.40e-15 | 68.9 |
MS.gene60770.t1 | MTR_8g062700 | 49.333 | 75 | 33 | 1 | 161 | 230 | 38 | 112 | 2.16e-14 | 72.8 |
MS.gene60770.t1 | MTR_8g062700 | 34.118 | 170 | 90 | 6 | 69 | 222 | 27 | 190 | 2.43e-13 | 69.7 |
MS.gene60770.t1 | MTR_8g062700 | 49.333 | 75 | 33 | 1 | 161 | 230 | 38 | 112 | 2.16e-14 | 72.8 |
MS.gene60770.t1 | MTR_8g062700 | 34.118 | 170 | 90 | 6 | 69 | 222 | 27 | 190 | 2.48e-13 | 69.7 |
MS.gene60770.t1 | MTR_6g008970 | 48.649 | 74 | 33 | 1 | 161 | 229 | 59 | 132 | 4.64e-13 | 68.9 |
MS.gene60770.t1 | MTR_6g008970 | 31.169 | 154 | 86 | 3 | 85 | 222 | 62 | 211 | 2.62e-11 | 63.5 |
MS.gene60770.t1 | MTR_6g008995 | 47.297 | 74 | 34 | 1 | 161 | 229 | 33 | 106 | 2.33e-12 | 66.2 |
MS.gene60770.t1 | MTR_6g008995 | 30.464 | 151 | 87 | 3 | 86 | 222 | 37 | 183 | 9.42e-11 | 61.6 |
MS.gene60770.t1 | MTR_1g104937 | 39.175 | 97 | 51 | 4 | 153 | 243 | 2 | 96 | 3.23e-12 | 62.0 |
MS.gene60770.t1 | MTR_8g062350 | 45.946 | 74 | 35 | 1 | 161 | 229 | 10 | 83 | 6.85e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60770.t1 | AT1G23810 | 30.000 | 190 | 104 | 4 | 76 | 240 | 4 | 189 | 1.36e-18 | 82.0 |
MS.gene60770.t1 | AT1G10450 | 36.478 | 159 | 82 | 5 | 78 | 222 | 77 | 230 | 1.71e-16 | 79.0 |
MS.gene60770.t1 | AT1G10450 | 47.143 | 70 | 32 | 1 | 165 | 229 | 84 | 153 | 3.82e-11 | 63.2 |
MS.gene60770.t1 | AT1G10450 | 36.478 | 159 | 82 | 5 | 78 | 222 | 26 | 179 | 1.93e-16 | 79.0 |
MS.gene60770.t1 | AT1G10450 | 47.143 | 70 | 32 | 1 | 165 | 229 | 33 | 102 | 3.69e-11 | 63.2 |
MS.gene60770.t1 | AT1G10450 | 36.478 | 159 | 82 | 5 | 78 | 222 | 26 | 179 | 1.93e-16 | 79.0 |
MS.gene60770.t1 | AT1G10450 | 47.143 | 70 | 32 | 1 | 165 | 229 | 33 | 102 | 3.69e-11 | 63.2 |
MS.gene60770.t1 | AT3G01320 | 48.101 | 79 | 36 | 1 | 156 | 229 | 48 | 126 | 5.45e-15 | 74.7 |
MS.gene60770.t1 | AT3G01320 | 32.026 | 153 | 85 | 4 | 85 | 222 | 56 | 204 | 5.87e-11 | 62.8 |
MS.gene60770.t1 | AT3G01320 | 48.101 | 79 | 36 | 1 | 156 | 229 | 48 | 126 | 5.61e-15 | 74.3 |
MS.gene60770.t1 | AT3G01320 | 32.026 | 153 | 85 | 4 | 85 | 222 | 56 | 204 | 6.04e-11 | 62.4 |
MS.gene60770.t1 | AT1G24230 | 29.762 | 168 | 104 | 4 | 73 | 234 | 1 | 160 | 1.70e-14 | 71.2 |
MS.gene60770.t1 | AT1G70060 | 52.703 | 74 | 30 | 1 | 161 | 229 | 10 | 83 | 5.04e-14 | 71.6 |
MS.gene60770.t1 | AT1G70060 | 52.703 | 74 | 30 | 1 | 161 | 229 | 10 | 83 | 5.04e-14 | 71.6 |
MS.gene60770.t1 | AT1G24190 | 51.351 | 74 | 31 | 1 | 161 | 229 | 10 | 83 | 6.02e-14 | 71.6 |
MS.gene60770.t1 | AT1G24190 | 30.723 | 166 | 95 | 4 | 73 | 222 | 1 | 162 | 2.55e-13 | 69.7 |
MS.gene60770.t1 | AT1G24190 | 51.351 | 74 | 31 | 1 | 161 | 229 | 10 | 83 | 6.19e-14 | 71.2 |
MS.gene60770.t1 | AT1G24190 | 30.723 | 166 | 95 | 4 | 73 | 222 | 1 | 162 | 2.58e-13 | 69.7 |
MS.gene60770.t1 | AT1G24190 | 51.351 | 74 | 31 | 1 | 161 | 229 | 10 | 83 | 7.01e-14 | 71.2 |
MS.gene60770.t1 | AT1G24190 | 30.723 | 166 | 95 | 4 | 73 | 222 | 1 | 162 | 3.00e-13 | 69.3 |
MS.gene60770.t1 | AT5G15025 | 44.578 | 83 | 41 | 1 | 152 | 229 | 34 | 116 | 8.99e-14 | 66.2 |
MS.gene60770.t1 | AT1G27260 | 30.409 | 171 | 95 | 3 | 90 | 240 | 7 | 173 | 1.12e-13 | 68.6 |
MS.gene60770.t1 | AT5G15020 | 48.052 | 77 | 35 | 1 | 158 | 229 | 45 | 121 | 3.24e-13 | 69.3 |
MS.gene60770.t1 | AT5G15020 | 34.868 | 152 | 81 | 4 | 85 | 222 | 51 | 198 | 1.18e-12 | 67.8 |
MS.gene60770.t1 | AT5G15020 | 48.052 | 77 | 35 | 1 | 158 | 229 | 45 | 121 | 3.55e-13 | 69.3 |
MS.gene60770.t1 | AT5G15020 | 34.868 | 152 | 81 | 4 | 85 | 222 | 51 | 198 | 1.37e-12 | 67.4 |
MS.gene60770.t1 | AT1G70030 | 44.595 | 74 | 36 | 1 | 161 | 229 | 18 | 91 | 1.35e-12 | 63.2 |
MS.gene60770.t1 | AT1G70030 | 44.595 | 74 | 36 | 1 | 161 | 229 | 18 | 91 | 1.81e-12 | 63.2 |
MS.gene60770.t1 | AT1G70030 | 44.000 | 75 | 37 | 1 | 161 | 230 | 7 | 81 | 3.70e-12 | 63.2 |
MS.gene60770.t1 | AT1G59890 | 48.571 | 70 | 31 | 1 | 165 | 229 | 45 | 114 | 6.08e-12 | 65.5 |
MS.gene60770.t1 | AT1G59890 | 48.571 | 70 | 31 | 1 | 165 | 229 | 45 | 114 | 6.08e-12 | 65.5 |
MS.gene60770.t1 | AT1G59890 | 48.571 | 70 | 31 | 1 | 165 | 229 | 45 | 114 | 6.13e-12 | 65.5 |
MS.gene60770.t1 | AT1G59890 | 48.571 | 70 | 31 | 1 | 165 | 229 | 45 | 114 | 6.13e-12 | 65.5 |
MS.gene60770.t1 | AT4G12020 | 48.571 | 70 | 30 | 2 | 165 | 229 | 308 | 376 | 2.36e-11 | 63.9 |
MS.gene60770.t1 | AT4G12020 | 48.571 | 70 | 30 | 2 | 165 | 229 | 308 | 376 | 2.45e-11 | 63.9 |
MS.gene60770.t1 | AT4G12020 | 48.571 | 70 | 30 | 2 | 165 | 229 | 308 | 376 | 2.45e-11 | 63.9 |
MS.gene60770.t1 | AT4G12020 | 48.571 | 70 | 30 | 2 | 165 | 229 | 308 | 376 | 2.45e-11 | 63.9 |
MS.gene60770.t1 | AT4G12020 | 48.571 | 70 | 30 | 2 | 165 | 229 | 308 | 376 | 2.46e-11 | 63.9 |
MS.gene60770.t1 | AT4G12020 | 48.571 | 70 | 30 | 2 | 165 | 229 | 308 | 376 | 2.46e-11 | 63.9 |
MS.gene60770.t1 | AT4G12020 | 48.571 | 70 | 30 | 2 | 165 | 229 | 241 | 309 | 2.46e-11 | 63.9 |
MS.gene60770.t1 | AT4G12020 | 48.571 | 70 | 30 | 2 | 165 | 229 | 308 | 376 | 2.46e-11 | 63.9 |
MS.gene60770.t1 | AT4G12020 | 48.571 | 70 | 30 | 2 | 165 | 229 | 308 | 376 | 2.47e-11 | 63.9 |
MS.gene60770.t1 | AT4G12020 | 48.571 | 70 | 30 | 2 | 165 | 229 | 308 | 376 | 2.47e-11 | 63.9 |
MS.gene60770.t1 | AT4G12020 | 48.571 | 70 | 30 | 2 | 165 | 229 | 308 | 376 | 2.47e-11 | 63.9 |
Find 37 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATCAAATCACACTTTCTTT+AGG | 0.218768 | 1.2:-71705711 | MS.gene60770:CDS |
ATCAAATCACACTTTCTTTA+GGG | 0.254430 | 1.2:-71705710 | MS.gene60770:CDS |
AGGTCATACAGATTTGATTT+TGG | 0.258121 | 1.2:-71705970 | MS.gene60770:CDS |
GTTGAACCACAAAATTAAAT+TGG | 0.276783 | 1.2:+71705542 | None:intergenic |
TAGATCATCGCGAACTCTAT+AGG | 0.330837 | 1.2:+71705935 | None:intergenic |
TTTGATCCTTGAAATCGTTT+AGG | 0.337609 | 1.2:+71705604 | None:intergenic |
GAATCTCCTAAACGATTTCA+AGG | 0.366786 | 1.2:-71705610 | MS.gene60770:CDS |
AGAGTGAAGGAGCTGCTTAA+AGG | 0.369945 | 1.2:-71705570 | MS.gene60770:CDS |
TAGAGTTTACCATGATGTAT+TGG | 0.385869 | 1.2:-71706141 | MS.gene60770:CDS |
GGGCATACAGATTTAATGTT+GGG | 0.407816 | 1.2:-71705759 | MS.gene60770:CDS |
AGATCATCGCGAACTCTATA+GGG | 0.427017 | 1.2:+71705936 | None:intergenic |
ACAAGAATTAACAAGTCATA+TGG | 0.437044 | 1.2:-71706048 | MS.gene60770:CDS |
GAGTGAAGGAGCTGCTTAAA+GGG | 0.452409 | 1.2:-71705569 | MS.gene60770:CDS |
AAGTATCGTTTCATGATAAG+AGG | 0.455819 | 1.2:-71705653 | MS.gene60770:CDS |
AGTGTGATTTGATGTTCCTT+TGG | 0.456196 | 1.2:+71705510 | None:intergenic |
ATTTACTTTCTTAAGATACA+TGG | 0.457924 | 1.2:+71705911 | None:intergenic |
TGATGTATTGGCATATTTCA+AGG | 0.462240 | 1.2:-71706129 | MS.gene60770:CDS |
CCGGTGGTGTCAAGTTGAAA+TGG | 0.483311 | 1.2:+71705486 | None:intergenic |
TCTTCACTCTTTCTTTGAAG+AGG | 0.486448 | 1.2:+71705793 | None:intergenic |
AGTGTGATTTGATGTTCCTT+TGG | 0.486633 | 1.2:+71705720 | None:intergenic |
TGATTTGATGTTCCTTTGGC+AGG | 0.495215 | 1.2:+71705514 | None:intergenic |
AGAGTGAAGATCTTGTTTGA+AGG | 0.516121 | 1.2:-71705780 | MS.gene60770:CDS |
AGAGTCAAGATCTTGTTTGA+AGG | 0.518551 | 1.2:-71705990 | MS.gene60770:CDS |
CCATTTCAACTTGACACCAC+CGG | 0.523375 | 1.2:-71705486 | MS.gene60770:CDS |
GAGTGAAGATCTTGTTTGAA+GGG | 0.525367 | 1.2:-71705779 | MS.gene60770:CDS |
TGAAATATGCCAATACATCA+TGG | 0.532900 | 1.2:+71706132 | None:intergenic |
ATGACAGGATAAAGTTTGAT+CGG | 0.533898 | 1.2:-71706085 | MS.gene60770:CDS |
AGGGCATACAGATTTAATGT+TGG | 0.545740 | 1.2:-71705760 | MS.gene60770:CDS |
ATGATTGTAGGGGAAATGCT+TGG | 0.553046 | 1.2:-71705178 | MS.gene60770:intron |
AGTATCGTTTCATGATAAGA+GGG | 0.573814 | 1.2:-71705652 | MS.gene60770:CDS |
TCTTGACTCTTGCTTCGACT+AGG | 0.580859 | 1.2:+71706003 | None:intergenic |
AAGTGCTGTGGCAAGAGTGA+AGG | 0.583838 | 1.2:-71705583 | MS.gene60770:CDS |
ATTCAACATCTTGCTGCCAA+AGG | 0.592473 | 1.2:-71705736 | MS.gene60770:CDS |
AGATGCATCAGCGTTTCTTG+AGG | 0.623515 | 1.2:-71705682 | MS.gene60770:CDS |
GTTCAACTACTTCCTGCCAA+AGG | 0.648751 | 1.2:-71705526 | MS.gene60770:CDS |
TTTCAAGGATCAAAGTGCTG+TGG | 0.672395 | 1.2:-71705595 | MS.gene60770:CDS |
ATAGATTACTAACTGACCGG+TGG | 0.714071 | 1.2:+71705470 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATATCGAACAAATATTA+TGG | + | chr1.2:71706119-71706138 | None:intergenic | 15.0% |
!! | AATGATTATTCAGTATAATT+AGG | + | chr1.2:71705225-71705244 | None:intergenic | 15.0% |
!! | ATTTACTTTCTTAAGATACA+TGG | + | chr1.2:71705532-71705551 | None:intergenic | 20.0% |
!!! | TACTATCTTTTATTGATTCT+TGG | - | chr1.2:71706220-71706239 | MS.gene60770:intron | 20.0% |
!!! | TTTTTTCTCAAATGATTGTA+GGG | - | chr1.2:71706251-71706270 | MS.gene60770:intron | 20.0% |
! | ACAAGAATTAACAAGTCATA+TGG | - | chr1.2:71705392-71705411 | MS.gene60770:intron | 25.0% |
! | ATATCGAACAAATATTATGG+TGG | + | chr1.2:71706116-71706135 | None:intergenic | 25.0% |
! | ATCAAATCACACTTTCTTTA+GGG | - | chr1.2:71705730-71705749 | MS.gene60770:CDS | 25.0% |
! | CATCTATTACTTTGAATTGA+TGG | - | chr1.2:71705195-71705214 | MS.gene60770:intron | 25.0% |
! | GTTGAACCACAAAATTAAAT+TGG | + | chr1.2:71705901-71705920 | None:intergenic | 25.0% |
!! | AACAAATTAGTCTCTAAACT+AGG | + | chr1.2:71706181-71706200 | None:intergenic | 25.0% |
!! | TTTTTCTCAAATGATTGTAG+GGG | - | chr1.2:71706252-71706271 | MS.gene60770:intron | 25.0% |
!!! | GTTTTTTCTCAAATGATTGT+AGG | - | chr1.2:71706250-71706269 | MS.gene60770:intron | 25.0% |
AGTATCGTTTCATGATAAGA+GGG | - | chr1.2:71705788-71705807 | MS.gene60770:CDS | 30.0% | |
ATCATAGATTACTAACTGAC+CGG | + | chr1.2:71705976-71705995 | None:intergenic | 30.0% | |
ATGACAGGATAAAGTTTGAT+CGG | - | chr1.2:71705355-71705374 | MS.gene60770:intron | 30.0% | |
CATCAAATCACACTTTCTTT+AGG | - | chr1.2:71705729-71705748 | MS.gene60770:CDS | 30.0% | |
TAGAGTTTACCATGATGTAT+TGG | - | chr1.2:71705299-71705318 | MS.gene60770:intron | 30.0% | |
TGAAATATGCCAATACATCA+TGG | + | chr1.2:71705311-71705330 | None:intergenic | 30.0% | |
TTTGATCCTTGAAATCGTTT+AGG | + | chr1.2:71705839-71705858 | None:intergenic | 30.0% | |
! | AAGTATCGTTTCATGATAAG+AGG | - | chr1.2:71705787-71705806 | MS.gene60770:CDS | 30.0% |
! | TGATGTATTGGCATATTTCA+AGG | - | chr1.2:71705311-71705330 | MS.gene60770:intron | 30.0% |
!! | AAATTGCTTTTCAAGATGAC+AGG | - | chr1.2:71705340-71705359 | MS.gene60770:intron | 30.0% |
!! | AGGTCATACAGATTTGATTT+TGG | - | chr1.2:71705470-71705489 | MS.gene60770:intron | 30.0% |
!! | GGCATACCAATTTAATTTTG+TGG | - | chr1.2:71705892-71705911 | MS.gene60770:CDS | 30.0% |
!! | GGTCATACAGATTTGATTTT+GGG | - | chr1.2:71705471-71705490 | MS.gene60770:intron | 30.0% |
!!! | ACTCTATAAGACTCGTTTTT+TGG | + | chr1.2:71705285-71705304 | None:intergenic | 30.0% |
!!! | CTCTATAAGACTCGTTTTTT+GGG | + | chr1.2:71705284-71705303 | None:intergenic | 30.0% |
!!! | TCTATAAGACTCGTTTTTTG+GGG | + | chr1.2:71705283-71705302 | None:intergenic | 30.0% |
AATCATGGCATTACAGCATA+TGG | + | chr1.2:71706077-71706096 | None:intergenic | 35.0% | |
AGCATATGGTAGAAACATGA+GGG | + | chr1.2:71706063-71706082 | None:intergenic | 35.0% | |
AGGGCATACAGATTTAATGT+TGG | - | chr1.2:71705680-71705699 | MS.gene60770:CDS | 35.0% | |
AGTGTGATTTGATGTTCCTT+TGG | + | chr1.2:71705723-71705742 | None:intergenic | 35.0% | |
CTTTCCTAGATTGAGTGTAA+TGG | - | chr1.2:71706152-71706171 | MS.gene60770:CDS | 35.0% | |
GAATCTCCTAAACGATTTCA+AGG | - | chr1.2:71705830-71705849 | MS.gene60770:CDS | 35.0% | |
GGGCATACAGATTTAATGTT+GGG | - | chr1.2:71705681-71705700 | MS.gene60770:CDS | 35.0% | |
TGGCAACAAACCAAAAATCA+TGG | + | chr1.2:71706092-71706111 | None:intergenic | 35.0% | |
! | AGAGTCAAGATCTTGTTTGA+AGG | - | chr1.2:71705450-71705469 | MS.gene60770:intron | 35.0% |
! | AGAGTGAAGATCTTGTTTGA+AGG | - | chr1.2:71705660-71705679 | MS.gene60770:CDS | 35.0% |
! | CGAACAAATATTATGGTGGA+TGG | + | chr1.2:71706112-71706131 | None:intergenic | 35.0% |
! | GAGTGAAGATCTTGTTTGAA+GGG | - | chr1.2:71705661-71705680 | MS.gene60770:CDS | 35.0% |
! | TCTTCACTCTTTCTTTGAAG+AGG | + | chr1.2:71705650-71705669 | None:intergenic | 35.0% |
! | TGCTGTAATGCCATGATTTT+TGG | - | chr1.2:71706079-71706098 | MS.gene60770:CDS | 35.0% |
!!! | CTATAAGACTCGTTTTTTGG+GGG | + | chr1.2:71705282-71705301 | None:intergenic | 35.0% |
!!! | TATAAGACTCGTTTTTTGGG+GGG | + | chr1.2:71705281-71705300 | None:intergenic | 35.0% |
AGATCATCGCGAACTCTATA+GGG | + | chr1.2:71705507-71705526 | None:intergenic | 40.0% | |
ATAGATTACTAACTGACCGG+TGG | + | chr1.2:71705973-71705992 | None:intergenic | 40.0% | |
ATGATTGTAGGGGAAATGCT+TGG | - | chr1.2:71706262-71706281 | MS.gene60770:intron | 40.0% | |
ATTCAACATCTTGCTGCCAA+AGG | - | chr1.2:71705704-71705723 | MS.gene60770:CDS | 40.0% | |
CAGCATATGGTAGAAACATG+AGG | + | chr1.2:71706064-71706083 | None:intergenic | 40.0% | |
TAGATCATCGCGAACTCTAT+AGG | + | chr1.2:71705508-71705527 | None:intergenic | 40.0% | |
TGATTTGATGTTCCTTTGGC+AGG | + | chr1.2:71705719-71705738 | None:intergenic | 40.0% | |
!! | TTTCAAGGATCAAAGTGCTG+TGG | - | chr1.2:71705845-71705864 | MS.gene60770:CDS | 40.0% |
!!! | ATAAGACTCGTTTTTTGGGG+GGG | + | chr1.2:71705280-71705299 | None:intergenic | 40.0% |
AGAGTGAAGGAGCTGCTTAA+AGG | - | chr1.2:71705870-71705889 | MS.gene60770:CDS | 45.0% | |
AGATGCATCAGCGTTTCTTG+AGG | - | chr1.2:71705758-71705777 | MS.gene60770:CDS | 45.0% | |
CCATTTCAACTTGACACCAC+CGG | - | chr1.2:71705954-71705973 | MS.gene60770:CDS | 45.0% | |
GACGCCATTACACTCAATCT+AGG | + | chr1.2:71706159-71706178 | None:intergenic | 45.0% | |
GAGTGAAGGAGCTGCTTAAA+GGG | - | chr1.2:71705871-71705890 | MS.gene60770:CDS | 45.0% | |
GTTCAACTACTTCCTGCCAA+AGG | - | chr1.2:71705914-71705933 | MS.gene60770:CDS | 45.0% | |
TCTTGACTCTTGCTTCGACT+AGG | + | chr1.2:71705440-71705459 | None:intergenic | 45.0% | |
! | AAGTGCTGTGGCAAGAGTGA+AGG | - | chr1.2:71705857-71705876 | MS.gene60770:CDS | 50.0% |
!! | CCGGTGGTGTCAAGTTGAAA+TGG | + | chr1.2:71705957-71705976 | None:intergenic | 50.0% |
!!! | CTCGTTTTTTGGGGGGGTGT+TGG | + | chr1.2:71705274-71705293 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 71705172 | 71706290 | 71705172 | ID=MS.gene60770 |
chr1.2 | mRNA | 71705172 | 71706290 | 71705172 | ID=MS.gene60770.t1;Parent=MS.gene60770 |
chr1.2 | exon | 71706288 | 71706290 | 71706288 | ID=MS.gene60770.t1.exon1;Parent=MS.gene60770.t1 |
chr1.2 | CDS | 71706288 | 71706290 | 71706288 | ID=cds.MS.gene60770.t1;Parent=MS.gene60770.t1 |
chr1.2 | exon | 71705483 | 71706192 | 71705483 | ID=MS.gene60770.t1.exon2;Parent=MS.gene60770.t1 |
chr1.2 | CDS | 71705483 | 71706192 | 71705483 | ID=cds.MS.gene60770.t1;Parent=MS.gene60770.t1 |
chr1.2 | exon | 71705172 | 71705190 | 71705172 | ID=MS.gene60770.t1.exon3;Parent=MS.gene60770.t1 |
chr1.2 | CDS | 71705172 | 71705190 | 71705172 | ID=cds.MS.gene60770.t1;Parent=MS.gene60770.t1 |
Gene Sequence |
Protein sequence |