Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91422.t1 | XP_003592441.1 | 93.1 | 173 | 12 | 0 | 1 | 173 | 1 | 173 | 3.80E-84 | 320.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91422.t1 | Q9LFQ3 | 38.2 | 152 | 90 | 2 | 12 | 162 | 51 | 199 | 2.7e-22 | 106.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91422.t1 | G7IE22 | 93.1 | 173 | 12 | 0 | 1 | 173 | 1 | 173 | 2.7e-84 | 320.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene91422.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene91330 | MS.gene91422 | PPI |
MS.gene91422 | MS.gene71600 | PPI |
MS.gene60770 | MS.gene91422 | PPI |
MS.gene80087 | MS.gene91422 | PPI |
MS.gene95089 | MS.gene91422 | PPI |
MS.gene93863 | MS.gene91422 | PPI |
MS.gene71600 | MS.gene91422 | PPI |
MS.gene80089 | MS.gene91422 | PPI |
MS.gene012752 | MS.gene91422 | PPI |
MS.gene80088 | MS.gene91422 | PPI |
MS.gene91421 | MS.gene91422 | PPI |
MS.gene43439 | MS.gene91422 | PPI |
MS.gene85574 | MS.gene91422 | PPI |
MS.gene93864 | MS.gene91422 | PPI |
MS.gene99643 | MS.gene91422 | PPI |
MS.gene93862 | MS.gene91422 | PPI |
MS.gene99644 | MS.gene91422 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91422.t1 | MTR_1g104960 | 93.064 | 173 | 12 | 0 | 1 | 173 | 1 | 173 | 1.23e-113 | 320 |
MS.gene91422.t1 | MTR_1g104960 | 55.294 | 85 | 38 | 0 | 91 | 175 | 5 | 89 | 6.20e-23 | 90.1 |
MS.gene91422.t1 | MTR_1g104980 | 69.182 | 159 | 34 | 1 | 17 | 175 | 3 | 146 | 2.24e-72 | 216 |
MS.gene91422.t1 | MTR_1g104980 | 56.579 | 76 | 33 | 0 | 17 | 92 | 74 | 149 | 5.65e-21 | 85.1 |
MS.gene91422.t1 | MTR_1g104980 | 58.824 | 68 | 28 | 0 | 101 | 168 | 1 | 68 | 4.09e-20 | 82.8 |
MS.gene91422.t1 | MTR_4g133300 | 48.428 | 159 | 79 | 1 | 13 | 171 | 89 | 244 | 7.74e-42 | 140 |
MS.gene91422.t1 | MTR_4g133300 | 42.857 | 175 | 90 | 3 | 1 | 175 | 1 | 165 | 5.42e-32 | 115 |
MS.gene91422.t1 | MTR_4g133470 | 48.750 | 160 | 77 | 3 | 13 | 171 | 89 | 244 | 5.54e-40 | 136 |
MS.gene91422.t1 | MTR_4g133470 | 41.714 | 175 | 92 | 3 | 1 | 175 | 1 | 165 | 7.62e-30 | 110 |
MS.gene91422.t1 | MTR_3g006105 | 49.664 | 149 | 69 | 4 | 27 | 170 | 23 | 170 | 4.36e-36 | 124 |
MS.gene91422.t1 | MTR_3g006105 | 43.421 | 76 | 42 | 1 | 100 | 174 | 9 | 84 | 4.86e-12 | 61.6 |
MS.gene91422.t1 | MTR_3g006150 | 47.651 | 149 | 76 | 2 | 21 | 168 | 13 | 160 | 4.01e-35 | 120 |
MS.gene91422.t1 | MTR_3g006150 | 47.297 | 74 | 36 | 1 | 100 | 173 | 9 | 79 | 4.97e-15 | 68.9 |
MS.gene91422.t1 | MTR_3g006125 | 48.026 | 152 | 74 | 3 | 27 | 173 | 104 | 255 | 8.80e-35 | 122 |
MS.gene91422.t1 | MTR_3g006185 | 45.562 | 169 | 85 | 4 | 11 | 173 | 6 | 173 | 1.67e-34 | 119 |
MS.gene91422.t1 | MTR_1g105955 | 39.759 | 166 | 93 | 1 | 2 | 167 | 5 | 163 | 2.93e-34 | 119 |
MS.gene91422.t1 | MTR_1g105955 | 43.243 | 74 | 42 | 0 | 98 | 171 | 15 | 88 | 3.29e-15 | 70.1 |
MS.gene91422.t1 | MTR_1g104937 | 63.441 | 93 | 34 | 0 | 6 | 98 | 5 | 97 | 5.13e-33 | 114 |
MS.gene91422.t1 | MTR_1g104937 | 57.895 | 76 | 32 | 0 | 100 | 175 | 13 | 88 | 5.92e-24 | 90.9 |
MS.gene91422.t1 | MTR_3g006065 | 46.104 | 154 | 79 | 3 | 23 | 173 | 15 | 167 | 1.18e-32 | 115 |
MS.gene91422.t1 | MTR_1g104950 | 67.059 | 85 | 24 | 2 | 36 | 120 | 1 | 81 | 1.42e-32 | 112 |
MS.gene91422.t1 | MTR_1g104950 | 61.111 | 54 | 21 | 0 | 122 | 175 | 1 | 54 | 3.23e-16 | 70.1 |
MS.gene91422.t1 | MTR_5g036670 | 39.216 | 153 | 93 | 0 | 11 | 163 | 41 | 193 | 1.19e-30 | 117 |
MS.gene91422.t1 | MTR_5g036670 | 50.000 | 76 | 37 | 1 | 100 | 175 | 44 | 118 | 4.86e-18 | 81.3 |
MS.gene91422.t1 | MTR_1g104940 | 65.000 | 80 | 28 | 0 | 13 | 92 | 14 | 93 | 7.46e-30 | 106 |
MS.gene91422.t1 | MTR_1g104940 | 55.696 | 79 | 35 | 0 | 97 | 175 | 12 | 90 | 1.45e-25 | 95.5 |
MS.gene91422.t1 | MTR_8g062700 | 38.816 | 152 | 93 | 0 | 11 | 162 | 40 | 191 | 4.55e-26 | 104 |
MS.gene91422.t1 | MTR_8g062700 | 51.316 | 76 | 36 | 1 | 100 | 175 | 43 | 117 | 1.09e-18 | 82.8 |
MS.gene91422.t1 | MTR_8g062700 | 38.816 | 152 | 93 | 0 | 11 | 162 | 40 | 191 | 4.55e-26 | 104 |
MS.gene91422.t1 | MTR_8g062700 | 51.316 | 76 | 36 | 1 | 100 | 175 | 43 | 117 | 1.07e-18 | 83.2 |
MS.gene91422.t1 | MTR_6g008995 | 37.086 | 151 | 93 | 2 | 13 | 163 | 37 | 185 | 2.21e-24 | 98.6 |
MS.gene91422.t1 | MTR_6g008995 | 44.444 | 72 | 40 | 0 | 100 | 171 | 38 | 109 | 4.38e-15 | 72.4 |
MS.gene91422.t1 | MTR_7g013380 | 33.526 | 173 | 109 | 3 | 1 | 169 | 1 | 171 | 3.05e-24 | 96.3 |
MS.gene91422.t1 | MTR_7g013380 | 35.119 | 168 | 99 | 4 | 13 | 174 | 99 | 262 | 9.61e-24 | 95.1 |
MS.gene91422.t1 | MTR_6g008970 | 35.948 | 153 | 98 | 0 | 11 | 163 | 61 | 213 | 2.34e-23 | 96.3 |
MS.gene91422.t1 | MTR_6g008970 | 44.000 | 75 | 42 | 0 | 100 | 174 | 64 | 138 | 6.98e-15 | 72.0 |
MS.gene91422.t1 | MTR_1g105960 | 48.684 | 76 | 39 | 0 | 100 | 175 | 2 | 77 | 3.30e-20 | 81.3 |
MS.gene91422.t1 | MTR_1g105960 | 37.190 | 121 | 50 | 1 | 14 | 134 | 2 | 96 | 3.44e-17 | 73.6 |
MS.gene91422.t1 | MTR_1g109550 | 38.806 | 134 | 68 | 4 | 3 | 136 | 10 | 129 | 6.10e-18 | 76.3 |
MS.gene91422.t1 | MTR_1g109550 | 44.615 | 65 | 35 | 1 | 102 | 166 | 19 | 82 | 7.66e-12 | 60.5 |
MS.gene91422.t1 | MTR_6g008995 | 35.659 | 129 | 81 | 2 | 35 | 163 | 2 | 128 | 1.68e-17 | 79.0 |
MS.gene91422.t1 | MTR_1g105010 | 51.429 | 70 | 34 | 0 | 98 | 167 | 15 | 84 | 3.40e-17 | 73.6 |
MS.gene91422.t1 | MTR_1g105010 | 49.231 | 65 | 33 | 0 | 11 | 75 | 14 | 78 | 8.70e-13 | 62.0 |
MS.gene91422.t1 | MTR_2g097830 | 41.525 | 118 | 59 | 3 | 1 | 118 | 59 | 166 | 6.85e-16 | 71.6 |
MS.gene91422.t1 | MTR_2g097830 | 35.659 | 129 | 71 | 2 | 50 | 169 | 12 | 137 | 1.29e-12 | 62.8 |
MS.gene91422.t1 | MTR_7g013410 | 26.027 | 146 | 103 | 1 | 16 | 161 | 1 | 141 | 3.90e-15 | 68.9 |
MS.gene91422.t1 | MTR_7g013410 | 44.776 | 67 | 37 | 0 | 103 | 169 | 2 | 68 | 1.50e-11 | 59.3 |
MS.gene91422.t1 | MTR_8g062350 | 45.833 | 72 | 39 | 0 | 97 | 168 | 12 | 83 | 1.88e-14 | 68.6 |
MS.gene91422.t1 | MTR_8g062350 | 46.479 | 71 | 38 | 0 | 12 | 82 | 13 | 83 | 2.70e-14 | 68.2 |
MS.gene91422.t1 | MTR_7g089490 | 40.541 | 74 | 43 | 1 | 90 | 163 | 8 | 80 | 7.97e-13 | 62.4 |
MS.gene91422.t1 | MTR_7g089490 | 47.761 | 67 | 35 | 0 | 11 | 77 | 14 | 80 | 1.47e-11 | 58.9 |
MS.gene91422.t1 | MTR_3g006010 | 55.172 | 58 | 26 | 0 | 27 | 84 | 23 | 80 | 9.43e-13 | 65.5 |
MS.gene91422.t1 | MTR_1g093310 | 41.026 | 78 | 38 | 2 | 94 | 170 | 4 | 74 | 2.89e-12 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91422.t1 | AT5G15020 | 37.662 | 154 | 92 | 2 | 11 | 163 | 50 | 200 | 6.50e-25 | 100 |
MS.gene91422.t1 | AT5G15020 | 42.105 | 76 | 44 | 0 | 93 | 168 | 46 | 121 | 5.63e-14 | 69.3 |
MS.gene91422.t1 | AT5G15020 | 37.662 | 154 | 92 | 2 | 11 | 163 | 50 | 200 | 7.22e-25 | 100 |
MS.gene91422.t1 | AT5G15020 | 42.105 | 76 | 44 | 0 | 93 | 168 | 46 | 121 | 5.96e-14 | 69.3 |
MS.gene91422.t1 | AT3G01320 | 36.905 | 168 | 99 | 3 | 4 | 169 | 46 | 208 | 6.21e-24 | 98.2 |
MS.gene91422.t1 | AT3G01320 | 36.905 | 168 | 99 | 3 | 4 | 169 | 46 | 208 | 6.40e-24 | 98.2 |
MS.gene91422.t1 | AT1G24230 | 34.146 | 164 | 92 | 3 | 11 | 173 | 12 | 160 | 1.75e-23 | 93.2 |
MS.gene91422.t1 | AT1G70060 | 37.908 | 153 | 94 | 1 | 11 | 162 | 12 | 164 | 2.37e-23 | 96.3 |
MS.gene91422.t1 | AT1G70060 | 47.826 | 69 | 36 | 0 | 100 | 168 | 15 | 83 | 6.56e-15 | 72.0 |
MS.gene91422.t1 | AT1G70060 | 37.908 | 153 | 94 | 1 | 11 | 162 | 12 | 164 | 2.37e-23 | 96.3 |
MS.gene91422.t1 | AT1G70060 | 47.826 | 69 | 36 | 0 | 100 | 168 | 15 | 83 | 6.56e-15 | 72.0 |
MS.gene91422.t1 | AT1G24190 | 35.625 | 160 | 102 | 1 | 11 | 169 | 12 | 171 | 4.98e-23 | 95.5 |
MS.gene91422.t1 | AT1G24190 | 45.946 | 74 | 39 | 1 | 100 | 172 | 15 | 88 | 5.01e-15 | 72.4 |
MS.gene91422.t1 | AT1G24190 | 36.184 | 152 | 97 | 0 | 11 | 162 | 12 | 163 | 5.28e-23 | 95.5 |
MS.gene91422.t1 | AT1G24190 | 45.946 | 74 | 39 | 1 | 100 | 172 | 15 | 88 | 5.11e-15 | 72.4 |
MS.gene91422.t1 | AT1G24190 | 35.625 | 160 | 102 | 1 | 11 | 169 | 12 | 171 | 5.48e-23 | 95.5 |
MS.gene91422.t1 | AT1G24190 | 45.946 | 74 | 39 | 1 | 100 | 172 | 15 | 88 | 5.36e-15 | 72.4 |
MS.gene91422.t1 | AT1G27260 | 37.419 | 155 | 91 | 4 | 11 | 160 | 1 | 154 | 5.54e-23 | 91.7 |
MS.gene91422.t1 | AT1G27260 | 42.667 | 75 | 43 | 0 | 98 | 172 | 2 | 76 | 3.68e-12 | 62.8 |
MS.gene91422.t1 | AT1G27260 | 32.203 | 118 | 79 | 1 | 11 | 128 | 91 | 207 | 6.59e-11 | 59.3 |
MS.gene91422.t1 | AT1G24200 | 35.443 | 158 | 89 | 2 | 9 | 161 | 10 | 159 | 3.18e-22 | 89.0 |
MS.gene91422.t1 | AT1G24200 | 45.588 | 68 | 37 | 0 | 100 | 167 | 15 | 82 | 1.94e-14 | 68.6 |
MS.gene91422.t1 | AT1G10450 | 35.948 | 153 | 96 | 2 | 9 | 161 | 80 | 230 | 8.70e-22 | 92.0 |
MS.gene91422.t1 | AT1G10450 | 47.826 | 69 | 36 | 0 | 100 | 168 | 85 | 153 | 3.78e-14 | 70.1 |
MS.gene91422.t1 | AT1G10450 | 35.948 | 153 | 96 | 2 | 9 | 161 | 29 | 179 | 1.09e-21 | 91.7 |
MS.gene91422.t1 | AT1G10450 | 47.826 | 69 | 36 | 0 | 100 | 168 | 34 | 102 | 3.66e-14 | 70.1 |
MS.gene91422.t1 | AT1G10450 | 35.948 | 153 | 96 | 2 | 9 | 161 | 29 | 179 | 1.09e-21 | 91.7 |
MS.gene91422.t1 | AT1G10450 | 47.826 | 69 | 36 | 0 | 100 | 168 | 34 | 102 | 3.66e-14 | 70.1 |
MS.gene91422.t1 | AT1G24250 | 30.994 | 171 | 96 | 3 | 11 | 160 | 12 | 181 | 2.10e-21 | 87.8 |
MS.gene91422.t1 | AT1G23810 | 29.586 | 169 | 108 | 3 | 2 | 160 | 3 | 170 | 5.49e-20 | 84.0 |
MS.gene91422.t1 | AT1G70030 | 36.242 | 149 | 93 | 2 | 13 | 161 | 11 | 157 | 5.49e-20 | 82.0 |
MS.gene91422.t1 | AT1G70030 | 43.056 | 72 | 41 | 0 | 100 | 171 | 12 | 83 | 5.36e-11 | 58.5 |
MS.gene91422.t1 | AT1G59890 | 34.641 | 153 | 92 | 2 | 13 | 162 | 45 | 192 | 4.96e-19 | 84.0 |
MS.gene91422.t1 | AT1G59890 | 46.377 | 69 | 37 | 0 | 100 | 168 | 46 | 114 | 3.24e-14 | 70.1 |
MS.gene91422.t1 | AT1G59890 | 34.641 | 153 | 92 | 2 | 13 | 162 | 45 | 192 | 5.10e-19 | 84.0 |
MS.gene91422.t1 | AT1G59890 | 46.377 | 69 | 37 | 0 | 100 | 168 | 46 | 114 | 3.40e-14 | 70.1 |
MS.gene91422.t1 | AT1G59890 | 34.641 | 153 | 92 | 2 | 13 | 162 | 45 | 192 | 5.11e-19 | 84.0 |
MS.gene91422.t1 | AT1G59890 | 46.377 | 69 | 37 | 0 | 100 | 168 | 46 | 114 | 3.43e-14 | 70.1 |
MS.gene91422.t1 | AT1G59890 | 34.641 | 153 | 92 | 2 | 13 | 162 | 45 | 192 | 5.11e-19 | 84.0 |
MS.gene91422.t1 | AT1G59890 | 46.377 | 69 | 37 | 0 | 100 | 168 | 46 | 114 | 3.40e-14 | 70.1 |
MS.gene91422.t1 | AT1G27280 | 33.566 | 143 | 93 | 1 | 21 | 161 | 1 | 143 | 1.08e-16 | 75.1 |
MS.gene91422.t1 | AT1G27220 | 45.070 | 71 | 39 | 0 | 11 | 81 | 12 | 82 | 9.55e-16 | 71.6 |
MS.gene91422.t1 | AT1G27220 | 36.986 | 73 | 46 | 0 | 95 | 167 | 10 | 82 | 3.24e-11 | 59.3 |
MS.gene91422.t1 | AT5G15040 | 46.269 | 67 | 36 | 0 | 102 | 168 | 6 | 72 | 2.02e-14 | 65.5 |
MS.gene91422.t1 | AT5G15040 | 42.857 | 77 | 42 | 1 | 13 | 89 | 3 | 77 | 1.85e-13 | 63.2 |
MS.gene91422.t1 | AT5G15040 | 46.269 | 67 | 36 | 0 | 102 | 168 | 6 | 72 | 2.02e-14 | 65.5 |
MS.gene91422.t1 | AT5G15040 | 42.857 | 77 | 42 | 1 | 13 | 89 | 3 | 77 | 1.85e-13 | 63.2 |
MS.gene91422.t1 | AT5G15040 | 46.269 | 67 | 36 | 0 | 102 | 168 | 6 | 72 | 2.02e-14 | 65.5 |
MS.gene91422.t1 | AT5G15040 | 42.857 | 77 | 42 | 1 | 13 | 89 | 3 | 77 | 1.85e-13 | 63.2 |
MS.gene91422.t1 | AT1G27250 | 47.826 | 69 | 36 | 0 | 12 | 80 | 20 | 88 | 1.37e-13 | 64.7 |
MS.gene91422.t1 | AT5G15025 | 41.975 | 81 | 47 | 0 | 2 | 82 | 36 | 116 | 2.40e-13 | 63.9 |
MS.gene91422.t1 | AT5G15025 | 40.845 | 71 | 42 | 0 | 98 | 168 | 46 | 116 | 1.43e-12 | 61.6 |
MS.gene91422.t1 | AT1G70030 | 38.261 | 115 | 65 | 2 | 13 | 122 | 22 | 135 | 4.70e-13 | 63.5 |
MS.gene91422.t1 | AT1G70030 | 43.056 | 72 | 41 | 0 | 100 | 171 | 23 | 94 | 4.74e-11 | 58.2 |
MS.gene91422.t1 | AT1G27270 | 32.716 | 162 | 96 | 2 | 12 | 160 | 13 | 174 | 5.09e-13 | 65.5 |
MS.gene91422.t1 | AT1G70030 | 40.206 | 97 | 57 | 1 | 13 | 109 | 22 | 117 | 1.32e-12 | 62.0 |
MS.gene91422.t1 | AT1G70030 | 43.056 | 72 | 41 | 0 | 100 | 171 | 23 | 94 | 2.22e-11 | 58.5 |
MS.gene91422.t1 | AT1G24210 | 42.667 | 75 | 41 | 1 | 4 | 76 | 3 | 77 | 1.55e-12 | 62.4 |
MS.gene91422.t1 | AT5G35610 | 40.230 | 87 | 49 | 1 | 1 | 87 | 1 | 84 | 3.59e-11 | 58.9 |
Find 30 sgRNAs with CRISPR-Local
Find 38 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGAAACTCCTACAAGATTT+TGG | 0.194654 | 1.3:+71691550 | MS.gene91422:CDS |
AACTCTTACATCAATTCTTT+TGG | 0.285232 | 1.3:-71691833 | None:intergenic |
GACTCTTCTATCAATTCTTT+TGG | 0.310378 | 1.3:-71691575 | None:intergenic |
GGTTACATTTGAAGATAAGA+TGG | 0.406022 | 1.3:+71691768 | MS.gene91422:CDS |
AAGCTGTGTTTCAAGATAAG+AGG | 0.447897 | 1.3:+71691509 | MS.gene91422:CDS |
CACCCTTGCATCGTCAATCA+AGG | 0.459246 | 1.3:-71691470 | None:intergenic |
ATGAACAGCTCAAGAAGAAC+AGG | 0.465556 | 1.3:+71691445 | MS.gene91422:CDS |
AGTCGTCAAAGAAGGAGTTA+TGG | 0.477577 | 1.3:+71691594 | MS.gene91422:CDS |
AGTTGTCAAAGAAGGAATGA+TGG | 0.479247 | 1.3:+71691852 | MS.gene91422:CDS |
ACATGAAATCCCACTTCCAT+TGG | 0.486277 | 1.3:+71691675 | MS.gene91422:CDS |
GATAGAAGAGTCGTCAAAGA+AGG | 0.515587 | 1.3:+71691586 | MS.gene91422:CDS |
AAATCATCATCCAATGGAAG+TGG | 0.515740 | 1.3:-71691685 | None:intergenic |
TTCAACATCTTCTTGCCACC+AGG | 0.516818 | 1.3:+71691652 | MS.gene91422:CDS |
ACACAAAATCTCACTTCCAT+TGG | 0.521284 | 1.3:+71691933 | MS.gene91422:CDS |
GTCCCTTGATTGACGATGCA+AGG | 0.537025 | 1.3:+71691467 | MS.gene91422:CDS |
AGCTGTGTTTCAAGATAAGA+GGG | 0.537554 | 1.3:+71691510 | MS.gene91422:CDS |
GATGTAAGAGTTGTCAAAGA+AGG | 0.540360 | 1.3:+71691844 | MS.gene91422:CDS |
CGATGCAAGGGTGTTTGTAA+AGG | 0.542038 | 1.3:+71691480 | MS.gene91422:CDS |
TTTGTGTCCCTCTGGCAAGA+AGG | 0.563533 | 1.3:-71691917 | None:intergenic |
TATTGTTCATCACCATCCAA+TGG | 0.573399 | 1.3:-71691949 | None:intergenic |
GGAAGTGGGATTTCATGTCC+TGG | 0.588837 | 1.3:-71691670 | None:intergenic |
TTCAACACCTTCTTGCCAGA+GGG | 0.592249 | 1.3:+71691910 | MS.gene91422:CDS |
AAAATCTCACTTCCATTGGA+TGG | 0.592611 | 1.3:+71691937 | MS.gene91422:CDS |
TCCCTTGATTGACGATGCAA+GGG | 0.593982 | 1.3:+71691468 | MS.gene91422:CDS |
TGTTGTAAATCATCATCCAA+TGG | 0.600709 | 1.3:-71691691 | None:intergenic |
AATCATCATCCAATGGAAGT+GGG | 0.616288 | 1.3:-71691684 | None:intergenic |
ACCCTTGCATCGTCAATCAA+GGG | 0.616892 | 1.3:-71691469 | None:intergenic |
ATTCAACACCTTCTTGCCAG+AGG | 0.655191 | 1.3:+71691909 | MS.gene91422:CDS |
AGCGCTCGAAGATCGAGCAA+TGG | 0.658283 | 1.3:+71691726 | MS.gene91422:CDS |
AGTGGGATTTCATGTCCTGG+TGG | 0.734772 | 1.3:-71691667 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGACCATAAAAATTTACTTT+TGG | + | chr1.3:71691885-71691904 | MS.gene91422:CDS | 20.0% |
!!! | ATCCCAAAAGTAAATTTTTA+TGG | - | chr1.3:71691891-71691910 | None:intergenic | 20.0% |
!!! | GACCATAAAAATTTACTTTT+GGG | + | chr1.3:71691886-71691905 | MS.gene91422:CDS | 20.0% |
!! | AACTCTTACATCAATTCTTT+TGG | - | chr1.3:71691836-71691855 | None:intergenic | 25.0% |
GGTTACATTTGAAGATAAGA+TGG | + | chr1.3:71691768-71691787 | MS.gene91422:CDS | 30.0% | |
TGTTGTAAATCATCATCCAA+TGG | - | chr1.3:71691694-71691713 | None:intergenic | 30.0% | |
! | GACTCTTCTATCAATTCTTT+TGG | - | chr1.3:71691578-71691597 | None:intergenic | 30.0% |
! | GGCATTTTTAACAACAGTTA+AGG | + | chr1.3:71691747-71691766 | MS.gene91422:CDS | 30.0% |
! | TTACATCAATTCTTTTGGCA+CGG | - | chr1.3:71691831-71691850 | None:intergenic | 30.0% |
AAAATCTCACTTCCATTGGA+TGG | + | chr1.3:71691937-71691956 | MS.gene91422:CDS | 35.0% | |
AAATCATCATCCAATGGAAG+TGG | - | chr1.3:71691688-71691707 | None:intergenic | 35.0% | |
AAGCTGTGTTTCAAGATAAG+AGG | + | chr1.3:71691509-71691528 | MS.gene91422:CDS | 35.0% | |
AATCATCATCCAATGGAAGT+GGG | - | chr1.3:71691687-71691706 | None:intergenic | 35.0% | |
ACACAAAATCTCACTTCCAT+TGG | + | chr1.3:71691933-71691952 | MS.gene91422:CDS | 35.0% | |
AGCTGTGTTTCAAGATAAGA+GGG | + | chr1.3:71691510-71691529 | MS.gene91422:CDS | 35.0% | |
AGTTGTCAAAGAAGGAATGA+TGG | + | chr1.3:71691852-71691871 | MS.gene91422:CDS | 35.0% | |
GATGTAAGAGTTGTCAAAGA+AGG | + | chr1.3:71691844-71691863 | MS.gene91422:CDS | 35.0% | |
TATTGTTCATCACCATCCAA+TGG | - | chr1.3:71691952-71691971 | None:intergenic | 35.0% | |
! | GTGAAACTCCTACAAGATTT+TGG | + | chr1.3:71691550-71691569 | MS.gene91422:CDS | 35.0% |
ACATGAAATCCCACTTCCAT+TGG | + | chr1.3:71691675-71691694 | MS.gene91422:CDS | 40.0% | |
AGTCGTCAAAGAAGGAGTTA+TGG | + | chr1.3:71691594-71691613 | MS.gene91422:CDS | 40.0% | |
ATGAACAGCTCAAGAAGAAC+AGG | + | chr1.3:71691445-71691464 | MS.gene91422:CDS | 40.0% | |
GATAGAAGAGTCGTCAAAGA+AGG | + | chr1.3:71691586-71691605 | MS.gene91422:CDS | 40.0% | |
! | TTTTGGCGCCAAAATCTTGT+AGG | - | chr1.3:71691561-71691580 | None:intergenic | 40.0% |
ACCCTTGCATCGTCAATCAA+GGG | - | chr1.3:71691472-71691491 | None:intergenic | 45.0% | |
ATTCAACACCTTCTTGCCAG+AGG | + | chr1.3:71691909-71691928 | MS.gene91422:CDS | 45.0% | |
TCCCTTGATTGACGATGCAA+GGG | + | chr1.3:71691468-71691487 | MS.gene91422:CDS | 45.0% | |
TTCAACACCTTCTTGCCAGA+GGG | + | chr1.3:71691910-71691929 | MS.gene91422:CDS | 45.0% | |
TTCAACATCTTCTTGCCACC+AGG | + | chr1.3:71691652-71691671 | MS.gene91422:CDS | 45.0% | |
! | AGTGAGATTTTGTGTCCCTC+TGG | - | chr1.3:71691928-71691947 | None:intergenic | 45.0% |
! | TTTTGGCACGGTAATCAGCT+AGG | - | chr1.3:71691819-71691838 | None:intergenic | 45.0% |
!! | CGATGCAAGGGTGTTTGTAA+AGG | + | chr1.3:71691480-71691499 | MS.gene91422:CDS | 45.0% |
AGTGGGATTTCATGTCCTGG+TGG | - | chr1.3:71691670-71691689 | None:intergenic | 50.0% | |
CACCCTTGCATCGTCAATCA+AGG | - | chr1.3:71691473-71691492 | None:intergenic | 50.0% | |
GGAAGTGGGATTTCATGTCC+TGG | - | chr1.3:71691673-71691692 | None:intergenic | 50.0% | |
GTCCCTTGATTGACGATGCA+AGG | + | chr1.3:71691467-71691486 | MS.gene91422:CDS | 50.0% | |
TTTGTGTCCCTCTGGCAAGA+AGG | - | chr1.3:71691920-71691939 | None:intergenic | 50.0% | |
AGCGCTCGAAGATCGAGCAA+TGG | + | chr1.3:71691726-71691745 | MS.gene91422:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 71691445 | 71691972 | 71691445 | ID=MS.gene91422 |
chr1.3 | mRNA | 71691445 | 71691972 | 71691445 | ID=MS.gene91422.t1;Parent=MS.gene91422 |
chr1.3 | exon | 71691445 | 71691972 | 71691445 | ID=MS.gene91422.t1.exon1;Parent=MS.gene91422.t1 |
chr1.3 | CDS | 71691445 | 71691972 | 71691445 | ID=cds.MS.gene91422.t1;Parent=MS.gene91422.t1 |
Gene Sequence |
Protein sequence |