AlfalfaGEDB | MS.gene99644

M. sativa cultivar XinJiangDaYe / MS.gene99644

KEGG: K11644
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02671.24

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99644.t1	RHN82063.1	49.8	289	32	3	13	299	2	179	5.50E-59	238

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99644.t1	Q9LFQ3	27.3	183	132	1	13	194	52	234	4.8e-11	70.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99644.t1	A0A396K1D1	49.8	289	32	3	13	299	2	179	4.0e-59	238.0

TFs/TRs:

Gene ID	Type	Classification
MS.gene99644.t1	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene99644	MS.gene80088	PPI
MS.gene80088	MS.gene99644	PPI
MS.gene91421	MS.gene99644	PPI
MS.gene99644	MS.gene93863	PPI
MS.gene99644	MS.gene93862	PPI
MS.gene99644	MS.gene95089	PPI
MS.gene99644	MS.gene80089	PPI
MS.gene99644	MS.gene93864	PPI
MS.gene85574	MS.gene99644	PPI
MS.gene99644	MS.gene91421	PPI
MS.gene99644	MS.gene80087	PPI
MS.gene91330	MS.gene99644	PPI
MS.gene99644	MS.gene71600	PPI
MS.gene99644	MS.gene99643	PPI
MS.gene99644	MS.gene43439	PPI
MS.gene60770	MS.gene99644	PPI
MS.gene80087	MS.gene99644	PPI
MS.gene99644	MS.gene60770	PPI
MS.gene80089	MS.gene99644	PPI
MS.gene99644	MS.gene012752	PPI
MS.gene99644	MS.gene91422	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99644.t1	MTR_1g104980	72.067	179	28	3	15	183	1	167	9.62e-80	239
MS.gene99644.t1	MTR_1g104980	60.591	203	50	4	99	299	2	176	1.80e-67	208
MS.gene99644.t1	MTR_1g104960	63.580	162	56	2	1	159	1	162	1.07e-58	186
MS.gene99644.t1	MTR_1g104960	58.170	153	61	1	104	253	21	173	1.69e-51	167
MS.gene99644.t1	MTR_1g104960	60.870	69	27	0	14	82	100	168	9.19e-22	90.5
MS.gene99644.t1	MTR_1g104960	51.807	83	40	0	176	258	10	92	5.87e-20	85.5
MS.gene99644.t1	MTR_4g133470	40.230	261	129	7	1	251	1	244	1.65e-42	147
MS.gene99644.t1	MTR_4g133470	45.161	155	79	4	113	266	26	175	1.23e-24	100
MS.gene99644.t1	MTR_4g133300	38.846	260	134	5	1	251	1	244	2.11e-41	144
MS.gene99644.t1	MTR_4g133300	42.208	154	85	2	113	266	26	175	1.39e-23	97.1
MS.gene99644.t1	MTR_7g013380	32.234	273	155	8	1	254	1	262	7.41e-29	112
MS.gene99644.t1	MTR_1g104940	50.000	118	47	2	182	299	17	122	1.13e-28	107
MS.gene99644.t1	MTR_1g104940	60.000	80	30	1	5	82	4	83	3.06e-25	97.8
MS.gene99644.t1	MTR_1g104940	44.048	84	38	1	99	173	17	100	8.62e-14	67.4
MS.gene99644.t1	MTR_1g105955	40.268	149	85	1	99	247	19	163	1.25e-28	108
MS.gene99644.t1	MTR_1g105955	39.873	158	91	2	2	159	5	158	6.66e-28	106
MS.gene99644.t1	MTR_3g006125	42.405	158	82	3	11	159	87	244	1.14e-26	105
MS.gene99644.t1	MTR_3g006125	35.503	169	90	4	99	253	92	255	2.09e-19	85.9
MS.gene99644.t1	MTR_3g006185	41.401	157	84	3	11	159	6	162	1.14e-25	100
MS.gene99644.t1	MTR_3g006185	35.882	170	87	4	99	253	11	173	1.13e-16	76.6
MS.gene99644.t1	MTR_1g104937	58.442	77	32	0	6	82	5	81	1.23e-25	98.6
MS.gene99644.t1	MTR_1g104937	55.172	87	38	1	182	268	15	100	4.31e-23	92.0
MS.gene99644.t1	MTR_1g104937	50.000	84	33	1	99	173	15	98	5.61e-17	75.5
MS.gene99644.t1	MTR_3g006105	42.405	158	82	4	11	159	6	163	6.32e-24	96.3
MS.gene99644.t1	MTR_3g006105	35.714	168	84	5	99	250	11	170	6.93e-16	74.7
MS.gene99644.t1	MTR_3g006150	41.935	155	76	4	12	159	7	154	2.51e-23	94.0
MS.gene99644.t1	MTR_3g006150	40.909	154	83	4	99	248	11	160	1.38e-20	86.7
MS.gene99644.t1	MTR_3g006150	42.353	85	45	2	182	266	11	91	1.83e-13	67.4
MS.gene99644.t1	MTR_1g104950	60.465	86	25	2	36	117	1	81	2.23e-22	89.4
MS.gene99644.t1	MTR_1g104950	47.945	73	36	1	202	272	1	73	2.96e-13	64.7
MS.gene99644.t1	MTR_1g104950	43.333	90	34	2	119	200	1	81	1.09e-12	63.2
MS.gene99644.t1	MTR_3g006065	41.290	155	77	4	12	159	7	154	2.04e-21	89.7
MS.gene99644.t1	MTR_3g006065	40.000	150	83	4	112	255	21	169	2.18e-18	81.6
MS.gene99644.t1	MTR_5g036670	31.795	195	113	7	11	194	41	226	1.39e-17	83.6
MS.gene99644.t1	MTR_5g036670	32.877	146	95	1	99	241	46	191	1.98e-15	77.0
MS.gene99644.t1	MTR_5g036670	38.824	85	52	0	182	266	46	130	4.40e-12	67.0
MS.gene99644.t1	MTR_8g062700	35.897	156	87	6	11	158	40	190	3.02e-16	79.7
MS.gene99644.t1	MTR_8g062700	35.762	151	84	2	99	241	45	190	2.03e-14	74.3
MS.gene99644.t1	MTR_8g062700	50.000	74	36	1	182	255	45	117	2.62e-13	70.9
MS.gene99644.t1	MTR_8g062700	35.897	156	87	6	11	158	40	190	3.02e-16	79.7
MS.gene99644.t1	MTR_8g062700	35.762	151	84	2	99	241	45	190	2.04e-14	74.3
MS.gene99644.t1	MTR_8g062700	50.000	74	36	1	182	255	45	117	2.62e-13	70.9
MS.gene99644.t1	MTR_1g105960	44.872	78	43	0	182	259	4	81	6.49e-16	72.8
MS.gene99644.t1	MTR_1g105960	36.441	118	52	2	14	131	2	96	2.60e-13	65.5
MS.gene99644.t1	MTR_1g105960	36.207	116	51	2	99	214	4	96	3.72e-12	62.4
MS.gene99644.t1	MTR_1g109550	39.231	130	69	3	4	133	10	129	2.05e-15	72.4
MS.gene99644.t1	MTR_1g109550	41.964	112	56	3	104	214	24	127	5.24e-14	68.6
MS.gene99644.t1	MTR_6g008995	34.000	150	92	3	13	158	37	183	3.18e-15	75.9
MS.gene99644.t1	MTR_6g008995	33.793	145	93	2	99	241	40	183	2.69e-14	73.2
MS.gene99644.t1	MTR_1g105010	50.794	63	31	0	13	75	16	78	2.24e-14	68.9
MS.gene99644.t1	MTR_6g008970	33.766	154	93	3	11	158	61	211	5.94e-14	72.8
MS.gene99644.t1	MTR_8g062350	42.857	70	40	0	13	82	14	83	4.84e-12	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99644.t1	AT1G27260	40.000	155	84	2	99	245	6	159	1.56e-25	101
MS.gene99644.t1	AT1G27260	34.807	181	97	3	11	173	1	178	6.35e-24	97.4
MS.gene99644.t1	AT1G27260	45.070	71	39	0	182	252	6	76	7.71e-11	61.2
MS.gene99644.t1	AT1G24230	32.487	197	112	5	98	288	16	197	9.59e-22	92.0
MS.gene99644.t1	AT1G24230	29.752	242	150	7	11	245	12	240	1.15e-21	92.0
MS.gene99644.t1	AT1G23810	35.359	181	101	5	99	266	17	194	4.18e-20	87.4
MS.gene99644.t1	AT1G23810	26.210	248	124	8	16	237	17	231	1.54e-13	69.3
MS.gene99644.t1	AT1G24250	29.630	216	126	4	99	290	17	230	1.15e-16	78.2
MS.gene99644.t1	AT1G24190	33.166	199	101	8	11	197	12	190	2.88e-16	79.7
MS.gene99644.t1	AT1G24190	34.395	157	95	6	99	249	17	171	8.09e-13	69.3
MS.gene99644.t1	AT1G24190	43.956	91	43	3	165	252	3	88	6.54e-11	63.5
MS.gene99644.t1	AT1G24190	33.166	199	101	8	11	197	12	190	3.43e-16	79.3
MS.gene99644.t1	AT1G24190	34.395	157	95	6	99	249	17	171	9.54e-13	69.3
MS.gene99644.t1	AT1G24190	43.956	91	43	3	165	252	3	88	7.23e-11	63.5
MS.gene99644.t1	AT1G24190	33.166	199	101	8	11	197	12	190	3.57e-16	79.3
MS.gene99644.t1	AT1G24190	34.395	157	95	6	99	249	17	171	1.13e-12	68.9
MS.gene99644.t1	AT1G24190	43.956	91	43	3	165	252	3	88	7.64e-11	63.5
MS.gene99644.t1	AT5G15020	31.720	186	120	3	13	194	52	234	4.73e-16	79.0
MS.gene99644.t1	AT5G15020	30.588	170	104	3	99	259	55	219	1.72e-11	65.5
MS.gene99644.t1	AT5G15020	31.720	186	120	3	13	194	52	234	5.47e-16	79.0
MS.gene99644.t1	AT5G15020	30.588	170	104	3	99	259	55	219	1.87e-11	65.1
MS.gene99644.t1	AT1G70060	31.937	191	103	5	11	194	12	182	3.81e-15	76.3
MS.gene99644.t1	AT1G70060	31.937	191	103	5	11	194	12	182	3.81e-15	76.3
MS.gene99644.t1	AT1G10450	32.704	159	98	3	9	162	80	234	5.00e-15	75.9
MS.gene99644.t1	AT1G10450	32.450	151	87	2	99	241	87	230	6.34e-11	63.5
MS.gene99644.t1	AT3G01320	34.194	155	90	5	11	158	55	204	5.15e-15	75.9
MS.gene99644.t1	AT3G01320	31.847	157	93	3	99	249	60	208	4.25e-11	64.3
MS.gene99644.t1	AT1G10450	32.704	159	98	3	9	162	29	183	5.28e-15	75.9
MS.gene99644.t1	AT1G10450	32.450	151	87	2	99	241	36	179	7.01e-11	63.5
MS.gene99644.t1	AT1G10450	32.704	159	98	3	9	162	29	183	5.28e-15	75.9
MS.gene99644.t1	AT1G10450	32.450	151	87	2	99	241	36	179	7.01e-11	63.5
MS.gene99644.t1	AT3G01320	34.194	155	90	5	11	158	55	204	5.64e-15	75.9
MS.gene99644.t1	AT3G01320	31.847	157	93	3	99	249	60	208	3.91e-11	64.3
MS.gene99644.t1	AT1G27280	31.606	193	119	5	24	205	4	194	1.07e-13	69.3
MS.gene99644.t1	AT1G27280	31.447	159	102	2	107	259	4	161	1.80e-13	68.9
MS.gene99644.t1	AT1G24200	33.333	144	94	2	100	242	18	160	1.16e-13	68.9
MS.gene99644.t1	AT1G24200	32.099	162	86	6	9	158	10	159	7.43e-13	66.6
MS.gene99644.t1	AT1G24200	36.296	135	75	4	165	294	3	131	8.61e-13	66.2
MS.gene99644.t1	AT5G15025	47.143	70	37	0	13	82	47	116	1.84e-12	63.5
MS.gene99644.t1	AT1G59890	33.987	153	88	5	13	158	45	191	2.16e-12	68.2
MS.gene99644.t1	AT1G59890	33.987	153	88	5	13	158	45	191	2.44e-12	67.8
MS.gene99644.t1	AT1G59890	33.987	153	88	5	13	158	45	191	2.48e-12	67.8
MS.gene99644.t1	AT1G59890	33.987	153	88	5	13	158	45	191	2.64e-12	67.8
MS.gene99644.t1	AT1G27220	38.961	77	47	0	5	81	6	82	4.55e-12	63.9
MS.gene99644.t1	AT5G15040	37.681	69	43	0	180	248	4	72	4.29e-11	58.9
MS.gene99644.t1	AT5G15040	37.681	69	43	0	180	248	4	72	4.29e-11	58.9
MS.gene99644.t1	AT5G15040	37.681	69	43	0	180	248	4	72	4.29e-11	58.9

Find 39 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTGCTGTTGCAAACGAATT+TGG	0.114157	1.4:-80786530	None:intergenic
GTCCCAAAAGTAAATCTTTA+TGG	0.189829	1.4:-80786676	None:intergenic
TGAAACTCCTACATGATTTC+AGG	0.203193	1.4:+80786348	MS.gene99644:CDS
AACTCTAAAATCAATTCTTT+TGG	0.284021	1.4:-80786948	None:intergenic
AACTCTCATATCAATTCTTT+TGG	0.286653	1.4:-80786621	None:intergenic
CTGCTGTTGCAAACGAATTT+GGG	0.300087	1.4:-80786529	None:intergenic
AACTCTTCTATCAATTCTTT+TGG	0.305538	1.4:-80786372	None:intergenic
AGACCATAAAGATTTACTTT+TGG	0.338463	1.4:+80786673	MS.gene99644:CDS
TGAAGCAATGACGTTTATAA+AGG	0.363280	1.4:+80786277	MS.gene99644:CDS
CTTCTATTCTTCTTGCCATC+AGG	0.382673	1.4:+80786485	MS.gene99644:CDS
AGTAGAATTAATCCCTTGAT+TGG	0.383598	1.4:+80786254	MS.gene99644:CDS
CGTCATTGCTTCACCAATCA+AGG	0.390356	1.4:-80786267	None:intergenic
AGTTGCATTTCCAGATAAGA+TGG	0.401348	1.4:+80786556	MS.gene99644:CDS
TGAACTTCAAGTTGATGAAA+TGG	0.408715	1.4:+80787162	MS.gene99644:CDS
AGTTGCATTTCAAGATAAGA+TGG	0.422713	1.4:+80786883	MS.gene99644:CDS
ACTTGTGTTTCAAGATAAGA+AGG	0.472355	1.4:+80786307	MS.gene99644:CDS
AGTTGTCAAAGATGGAGTTA+TGG	0.472541	1.4:+80786391	MS.gene99644:CDS
TTCAACATCTTCTTGCCAGC+AGG	0.472583	1.4:+80786449	MS.gene99644:CDS
GATAGAAGAGTTGTCAAAGA+TGG	0.492886	1.4:+80786383	MS.gene99644:CDS
AATCAAGGGATTAATTCTAC+TGG	0.502349	1.4:-80786252	None:intergenic
GAAACTCCTACATGATTTCA+GGG	0.508203	1.4:+80786349	MS.gene99644:CDS
ACACAAAATCTCGCTTCCAT+TGG	0.511090	1.4:+80787048	MS.gene99644:CDS
GATGAACAACAAGGTGATGA+TGG	0.529706	1.4:+80787076	MS.gene99644:CDS
GATGATGAACAACAAGGTGA+TGG	0.541884	1.4:+80786797	MS.gene99644:CDS
AACGAATTTGGGAATAGAAG+TGG	0.545086	1.4:-80786518	None:intergenic
CTCAACACTTGGTTGCCAGC+AGG	0.555626	1.4:+80787025	MS.gene99644:CDS
AAAATCTCGCTTCCATTGGA+TGG	0.557864	1.4:+80787052	MS.gene99644:CDS
GATGCTGAACAACAAGGTGA+TGG	0.558029	1.4:+80787124	MS.gene99644:CDS
ACGAATTTGGGAATAGAAGT+GGG	0.571692	1.4:-80786517	None:intergenic
AGTGGGATTTCATCTCCTGC+TGG	0.573929	1.4:-80786464	None:intergenic
TGTTGTTCATCACCATCCAA+TGG	0.575143	1.4:-80787064	None:intergenic
GTCATTGCTTCACCAATCAA+GGG	0.590508	1.4:-80786266	None:intergenic
AGTGGGAATTCATGTCCTGA+TGG	0.611682	1.4:-80786500	None:intergenic
GATGGCAAGAAGAATAGAAG+TGG	0.618772	1.4:-80786482	None:intergenic
TGAACAACAAGGTGATGGAT+CGG	0.624867	1.4:+80786802	MS.gene99644:CDS
CAGAAAGATGCTGAACAACA+AGG	0.627330	1.4:+80787118	MS.gene99644:CDS
ATGGCAAGAAGAATAGAAGT+GGG	0.663090	1.4:-80786481	None:intergenic
CAGAAAGATGATGAACAACA+AGG	0.695192	1.4:+80786791	MS.gene99644:intron
TTGGATGGTGATGAACAACA+AGG	0.791947	1.4:+80787067	MS.gene99644:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AACTCTAAAATCAATTCTTT+TGG	-	chr1.4:80786951-80786970	None:intergenic	20.0%
!!!	AGACCATAAAAATTTACTTT+TGG	+	chr1.4:80787000-80787019	MS.gene99644:CDS	20.0%
!!!	GACCATAAAAATTTACTTTT+GGG	+	chr1.4:80787001-80787020	MS.gene99644:CDS	20.0%
!!	AACTCTCATATCAATTCTTT+TGG	-	chr1.4:80786624-80786643	None:intergenic	25.0%
!!	AACTCTTCTATCAATTCTTT+TGG	-	chr1.4:80786375-80786394	None:intergenic	25.0%
!!	AGACCATAAAGATTTACTTT+TGG	+	chr1.4:80786673-80786692	MS.gene99644:CDS	25.0%
!!	GTCCCAAAAGTAAATTTTTA+TGG	-	chr1.4:80787006-80787025	None:intergenic	25.0%
!!!	GACCATAAAGATTTACTTTT+GGG	+	chr1.4:80786674-80786693	MS.gene99644:CDS	25.0%
!!!	GATTTTAGAGTTTTCAAAGA+AGG	+	chr1.4:80786959-80786978	MS.gene99644:CDS	25.0%
	AAAATCTAACTTCCATTGGA+TGG	+	chr1.4:80786725-80786744	MS.gene99644:intron	30.0%
	AATCAAGGGATTAATTCTAC+TGG	-	chr1.4:80786255-80786274	None:intergenic	30.0%
	ACACAAAATCTAACTTCCAT+TGG	+	chr1.4:80786721-80786740	MS.gene99644:intron	30.0%
	ACTTGTGTTTCAAGATAAGA+AGG	+	chr1.4:80786307-80786326	MS.gene99644:CDS	30.0%
	AGTAGAATTAATCCCTTGAT+TGG	+	chr1.4:80786254-80786273	MS.gene99644:CDS	30.0%
	AGTTGCATTTCAAGATAAGA+TGG	+	chr1.4:80786883-80786902	MS.gene99644:CDS	30.0%
	GTCCCAAAAGTAAATCTTTA+TGG	-	chr1.4:80786679-80786698	None:intergenic	30.0%
	TGAAGCAATGACGTTTATAA+AGG	+	chr1.4:80786277-80786296	MS.gene99644:CDS	30.0%
!	AGTTTTCAAAGAAGGAATGA+TGG	+	chr1.4:80786640-80786659	MS.gene99644:CDS	30.0%
!	GATATGAGAGTTTTCAAAGA+AGG	+	chr1.4:80786632-80786651	MS.gene99644:CDS	30.0%
!	TAGAGTTTTCAAAGAAGGAA+TGG	+	chr1.4:80786964-80786983	MS.gene99644:CDS	30.0%
!	TCATACTTTTCCATCTTATC+TGG	-	chr1.4:80786569-80786588	None:intergenic	30.0%
!!	TGAACTTCAAGTTGATGAAA+TGG	+	chr1.4:80787162-80787181	MS.gene99644:CDS	30.0%
	AACGAATTTGGGAATAGAAG+TGG	-	chr1.4:80786521-80786540	None:intergenic	35.0%
	ACGAATTTGGGAATAGAAGT+GGG	-	chr1.4:80786520-80786539	None:intergenic	35.0%
	AGTTGCATTTCCAGATAAGA+TGG	+	chr1.4:80786556-80786575	MS.gene99644:CDS	35.0%
	AGTTGTCAAAGATGGAGTTA+TGG	+	chr1.4:80786391-80786410	MS.gene99644:CDS	35.0%
	ATGGCAAGAAGAATAGAAGT+GGG	-	chr1.4:80786484-80786503	None:intergenic	35.0%
	CAGAAAGATGATGAACAACA+AGG	+	chr1.4:80786791-80786810	MS.gene99644:intron	35.0%
	GAAACTCCTACATGATTTCA+GGG	+	chr1.4:80786349-80786368	MS.gene99644:CDS	35.0%
	GATAGAAGAGTTGTCAAAGA+TGG	+	chr1.4:80786383-80786402	MS.gene99644:CDS	35.0%
	TGAAACTCCTACATGATTTC+AGG	+	chr1.4:80786348-80786367	MS.gene99644:CDS	35.0%
!	AGTTTTCAAAGAAGGAATGG+TGG	+	chr1.4:80786967-80786986	MS.gene99644:CDS	35.0%
	AAAATCTCGCTTCCATTGGA+TGG	+	chr1.4:80787052-80787071	MS.gene99644:CDS	40.0%
	ACACAAAATCTCGCTTCCAT+TGG	+	chr1.4:80787048-80787067	MS.gene99644:CDS	40.0%
	ACTGCTGTTGCAAACGAATT+TGG	-	chr1.4:80786533-80786552	None:intergenic	40.0%
	CAGAAAGATGCTGAACAACA+AGG	+	chr1.4:80787118-80787137	MS.gene99644:CDS	40.0%
	CTGCTGTTGCAAACGAATTT+GGG	-	chr1.4:80786532-80786551	None:intergenic	40.0%
	CTTCTATTCTTCTTGCCATC+AGG	+	chr1.4:80786485-80786504	MS.gene99644:CDS	40.0%
	GATGAACAACAAGGTGATGA+TGG	+	chr1.4:80787076-80787095	MS.gene99644:CDS	40.0%
	GATGATGAACAACAAGGTGA+TGG	+	chr1.4:80786797-80786816	MS.gene99644:CDS	40.0%
	GATGGCAAGAAGAATAGAAG+TGG	-	chr1.4:80786485-80786504	None:intergenic	40.0%
	GTCATTGCTTCACCAATCAA+GGG	-	chr1.4:80786269-80786288	None:intergenic	40.0%
	TGTTGTTCATCACCATCCAA+TGG	-	chr1.4:80786740-80786759	None:intergenic	40.0%
!	AGTTAGATTTTGTGTCCCAC+TGG	-	chr1.4:80786716-80786735	None:intergenic	40.0%
!	TTGGATGGTGATGAACAACA+AGG	+	chr1.4:80786740-80786759	MS.gene99644:intron	40.0%
!	TTTTGGCCCTGAAATCATGT+AGG	-	chr1.4:80786358-80786377	None:intergenic	40.0%
!!	TGAACAACAAGGTGATGGAT+CGG	+	chr1.4:80786802-80786821	MS.gene99644:CDS	40.0%
!!!	TACTTTTGGGACTCAACACT+TGG	+	chr1.4:80786687-80786706	MS.gene99644:CDS	40.0%
	AGTGGGAATTCATGTCCTGA+TGG	-	chr1.4:80786503-80786522	None:intergenic	45.0%
	CGTCATTGCTTCACCAATCA+AGG	-	chr1.4:80786270-80786289	None:intergenic	45.0%
	GATGAACAACAAGGTGGAGA+TGG	+	chr1.4:80786749-80786768	MS.gene99644:intron	45.0%
	GATGCTGAACAACAAGGTGA+TGG	+	chr1.4:80787124-80787143	MS.gene99644:CDS	45.0%
	TTCAACATCTTCTTGCCAGC+AGG	+	chr1.4:80786449-80786468	MS.gene99644:CDS	45.0%
!	GATGGTGATGAACAACAAGG+TGG	+	chr1.4:80786743-80786762	MS.gene99644:intron	45.0%
	ACTCAACACTTGGTTGCCAG+TGG	+	chr1.4:80786697-80786716	MS.gene99644:intron	50.0%
	AGTGGGATTTCATCTCCTGC+TGG	-	chr1.4:80786467-80786486	None:intergenic	50.0%
	CTCAACACTTGGTTGCCAGT+GGG	+	chr1.4:80786698-80786717	MS.gene99644:intron	50.0%
!	AGCGAGATTTTGTGTCCTGC+TGG	-	chr1.4:80787043-80787062	None:intergenic	50.0%
	CTCAACACTTGGTTGCCAGC+AGG	+	chr1.4:80787025-80787044	MS.gene99644:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	80786242	80787219	80786242	ID=MS.gene99644
chr1.4	mRNA	80786242	80787219	80786242	ID=MS.gene99644.t1;Parent=MS.gene99644
chr1.4	exon	80786242	80786715	80786242	ID=MS.gene99644.t1.exon1;Parent=MS.gene99644.t1
chr1.4	CDS	80786242	80786715	80786242	ID=cds.MS.gene99644.t1;Parent=MS.gene99644.t1
chr1.4	exon	80786794	80787219	80786794	ID=MS.gene99644.t1.exon2;Parent=MS.gene99644.t1
chr1.4	CDS	80786794	80787219	80786794	ID=cds.MS.gene99644.t1;Parent=MS.gene99644.t1

Gene Sequence

>MS.gene99644

ATGAACAGCTCCAGTAGAATTAATCCCTTGATTGGTGAAGCAATGACGTTTATAAAGGATATAAAACTTGTGTTTCAAGATAAGAAGGAAAAGTTTAATGAATTCATGAAACTCCTACATGATTTCAGGGCCAAAAGAATTGATAGAAGAGTTGTCAAAGATGGAGTTATGGAGTTGTTGAAAGAACATCAAGATTTAATTTCAAGATTCAACATCTTCTTGCCAGCAGGAGATGAAATCCCACTTCTATTCTTCTTGCCATCAGGACATGAATTCCCACTTCTATTCCCAAATTCGTTTGCAACAGCAGTTAAAGTTGCATTTCCAGATAAGATGGAAAAGTATGATGAATTCTTGAAACTCGTAGTTGATTGCAATGCCAAAAGAATTGATATGAGAGTTTTCAAAGAAGGAATGATGGAGTTGTTTAAAGACCATAAAGATTTACTTTTGGGACTCAACACTTGGTTGCCAGTGGGACACAAAATCTAACTTCCATTGGATGGTGATGAACAACAAGGTGGAGATGGATTAGAGTTGAAAGATGCACAGAAAGATGATGAACAACAAGGTGATGGATCGGCGCTCAAAGATGAATCAGCACTCGCAGATGCAACAAAGTCGTTTGCAACAGCAGTTAAAGTTGCATTTCAAGATAAGATGGATAAGTATGATGAATTCTTAAAACTCATAATTGATTGTCGTACCAAAAGAATTGATTTTAGAGTTTTCAAAGAAGGAATGGTGGAGTTGTTTAAAGACCATAAAAATTTACTTTTGGGACTCAACACTTGGTTGCCAGCAGGACACAAAATCTCGCTTCCATTGGATGGTGATGAACAACAAGGTGATGATGGATTAGAGTTGAAAGATGCACAGAAAGATGCTGAACAACAAGGTGATGGATTAGAGTACAAAGATGAACTTCAAGTTGATGAAATGGCACTCAAAGATGAGCAGAAAGATGACGAACAATAA

Protein sequence

>MS.gene99644.t1

MNSSSRINPLIGEAMTFIKDIKLVFQDKKEKFNEFMKLLHDFRAKRIDRRVVKDGVMELLKEHQDLISRFNIFLPAGDEIPLLFFLPSGHEFPLLFPNSFATAVKVAFPDKMEKYDEFLKLVVDCNAKRIDMRVFKEGMMELFKDHKDLLLGLNTWLPKDDEQQGDGSALKDESALADATKSFATAVKVAFQDKMDKYDEFLKLIIDCRTKRIDFRVFKEGMVELFKDHKNLLLGLNTWLPAGHKISLPLDGDEQQGDDGLELKDAQKDAEQQGDGLEYKDELQVDEMALKDEQKDDEQ