AlfalfaGEDB | MS.gene80089

M. sativa cultivar XinJiangDaYe / MS.gene80089

KEGG: K11644
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02671.24

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80089.t1	RHN82063.1	78	177	26	2	13	188	2	166	5.70E-67	264.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80089.t1	Q9XIK6	32.3	161	106	2	1	158	70	230	4.3e-15	83.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80089.t1	A0A396K1D1	78.0	177	26	2	13	188	2	166	4.1e-67	264.6

TFs/TRs:

Gene ID	Type	Classification
MS.gene80089.t1	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene91421	MS.gene80089	PPI
MS.gene80089	MS.gene80088	PPI
MS.gene85574	MS.gene80089	PPI
MS.gene80089	MS.gene012752	PPI
MS.gene80089	MS.gene91422	PPI
MS.gene80089	MS.gene93862	PPI
MS.gene99644	MS.gene80089	PPI
MS.gene91330	MS.gene80089	PPI
MS.gene80089	MS.gene93864	PPI
MS.gene60770	MS.gene80089	PPI
MS.gene80089	MS.gene91421	PPI
MS.gene80089	MS.gene93863	PPI
MS.gene80087	MS.gene80089	PPI
MS.gene80089	MS.gene95089	PPI
MS.gene80088	MS.gene80089	PPI
MS.gene80089	MS.gene99643	PPI
MS.gene80089	MS.gene43439	PPI
MS.gene80089	MS.gene60770	PPI
MS.gene80089	MS.gene99644	PPI
MS.gene80089	MS.gene80087	PPI
MS.gene80089	MS.gene71600	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80089.t1	MTR_1g104980	78.212	179	26	2	15	192	1	167	3.44e-91	269
MS.gene80089.t1	MTR_1g104980	57.547	212	53	2	99	310	2	176	2.13e-69	213
MS.gene80089.t1	MTR_1g104960	61.081	185	45	2	1	170	1	173	1.96e-67	209
MS.gene80089.t1	MTR_1g104960	61.635	159	55	1	104	262	21	173	2.51e-60	190
MS.gene80089.t1	MTR_1g104960	51.807	83	40	0	185	267	10	92	7.12e-20	85.5
MS.gene80089.t1	MTR_4g133470	41.985	262	132	7	1	260	1	244	3.81e-47	159
MS.gene80089.t1	MTR_4g133470	42.683	164	79	4	113	275	26	175	8.28e-25	100
MS.gene80089.t1	MTR_4g133300	40.613	261	137	5	1	260	1	244	7.32e-47	158
MS.gene80089.t1	MTR_4g133300	39.877	163	85	2	113	275	26	175	8.36e-24	98.2
MS.gene80089.t1	MTR_7g013380	32.847	274	161	7	1	263	1	262	5.25e-32	121
MS.gene80089.t1	MTR_7g013380	33.702	181	106	4	100	276	17	187	4.06e-19	86.3
MS.gene80089.t1	MTR_1g105955	39.634	164	93	3	2	164	5	163	2.23e-29	110
MS.gene80089.t1	MTR_1g105955	37.342	158	86	1	99	256	19	163	2.91e-28	108
MS.gene80089.t1	MTR_1g104940	51.887	106	50	1	191	296	17	121	7.84e-28	105
MS.gene80089.t1	MTR_1g104940	61.250	80	29	1	5	82	4	83	5.67e-25	97.4
MS.gene80089.t1	MTR_1g104940	52.381	84	40	0	99	182	17	100	9.39e-23	91.7
MS.gene80089.t1	MTR_3g006125	40.828	169	91	3	11	170	87	255	1.26e-27	108
MS.gene80089.t1	MTR_3g006125	38.462	169	94	4	99	262	92	255	9.77e-23	95.1
MS.gene80089.t1	MTR_3g006185	40.476	168	92	3	11	170	6	173	3.23e-27	105
MS.gene80089.t1	MTR_3g006185	38.824	170	91	4	99	262	11	173	2.87e-20	86.7
MS.gene80089.t1	MTR_1g104937	59.740	77	31	0	6	82	5	81	2.40e-25	98.2
MS.gene80089.t1	MTR_1g104937	57.143	84	36	0	99	182	15	98	2.52e-24	95.5
MS.gene80089.t1	MTR_1g104937	55.172	87	38	1	191	277	15	100	5.22e-23	92.0
MS.gene80089.t1	MTR_3g006150	41.875	160	82	4	99	257	11	160	3.08e-25	99.4
MS.gene80089.t1	MTR_3g006150	40.994	161	81	4	12	165	7	160	4.35e-23	93.6
MS.gene80089.t1	MTR_3g006150	42.353	85	45	2	191	275	11	91	1.88e-13	67.4
MS.gene80089.t1	MTR_3g006105	40.588	170	83	5	11	167	6	170	9.11e-25	99.0
MS.gene80089.t1	MTR_3g006105	39.286	168	87	5	99	259	11	170	3.24e-21	89.4
MS.gene80089.t1	MTR_1g104950	60.465	86	25	2	36	117	1	81	3.82e-22	88.6
MS.gene80089.t1	MTR_1g104950	49.451	91	36	1	119	209	1	81	6.73e-20	82.8
MS.gene80089.t1	MTR_1g104950	47.945	73	36	1	211	281	1	73	3.06e-13	64.7
MS.gene80089.t1	MTR_3g006065	40.385	156	83	4	112	264	21	169	9.81e-22	90.9
MS.gene80089.t1	MTR_3g006065	39.412	170	87	5	12	172	7	169	6.31e-21	88.6
MS.gene80089.t1	MTR_5g036670	32.934	167	103	2	87	250	31	191	9.92e-19	87.4
MS.gene80089.t1	MTR_5g036670	35.484	155	89	4	11	158	41	191	1.14e-17	84.0
MS.gene80089.t1	MTR_5g036670	38.824	85	52	0	191	275	46	130	4.34e-12	67.4
MS.gene80089.t1	MTR_8g062700	37.500	152	89	2	99	250	45	190	7.88e-18	84.7
MS.gene80089.t1	MTR_8g062700	35.897	156	87	6	11	158	40	190	6.64e-16	79.0
MS.gene80089.t1	MTR_8g062700	50.000	74	36	1	191	264	45	117	2.78e-13	70.9
MS.gene80089.t1	MTR_8g062700	37.500	152	89	2	99	250	45	190	8.33e-18	84.7
MS.gene80089.t1	MTR_8g062700	35.897	156	87	6	11	158	40	190	7.02e-16	79.0
MS.gene80089.t1	MTR_8g062700	50.000	74	36	1	191	264	45	117	2.83e-13	70.9
MS.gene80089.t1	MTR_6g008995	34.868	152	91	3	99	250	40	183	3.82e-16	79.0
MS.gene80089.t1	MTR_6g008995	34.667	150	91	3	13	158	37	183	2.15e-15	76.6
MS.gene80089.t1	MTR_1g105960	44.872	78	43	0	191	268	4	81	6.78e-16	72.8
MS.gene80089.t1	MTR_1g105960	43.902	82	46	0	99	180	4	85	2.75e-15	71.2
MS.gene80089.t1	MTR_1g105960	37.288	118	51	2	14	131	2	96	1.98e-13	65.9
MS.gene80089.t1	MTR_1g109550	38.583	127	71	2	7	133	10	129	1.54e-15	72.8
MS.gene80089.t1	MTR_1g109550	39.167	120	57	3	104	223	24	127	1.19e-13	67.4
MS.gene80089.t1	MTR_6g008970	35.065	154	91	3	11	158	61	211	2.43e-15	77.0
MS.gene80089.t1	MTR_6g008970	32.237	152	97	1	99	250	66	211	5.72e-13	70.1
MS.gene80089.t1	MTR_1g105010	52.381	63	30	0	13	75	16	78	1.51e-14	69.3
MS.gene80089.t1	MTR_8g062350	44.286	70	39	0	13	82	14	83	3.38e-12	65.1
MS.gene80089.t1	MTR_7g013410	27.152	151	99	1	100	250	2	141	7.78e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80089.t1	AT1G27260	41.667	156	89	2	99	254	6	159	7.30e-28	108
MS.gene80089.t1	AT1G27260	37.017	181	102	3	11	182	1	178	3.27e-25	101
MS.gene80089.t1	AT1G27260	45.070	71	39	0	191	261	6	76	9.04e-11	61.2
MS.gene80089.t1	AT1G23810	33.659	205	130	4	99	299	17	219	4.22e-23	95.9
MS.gene80089.t1	AT1G23810	27.907	215	128	7	16	214	17	220	1.10e-14	72.8
MS.gene80089.t1	AT1G24230	29.084	251	149	7	11	254	12	240	1.82e-22	94.4
MS.gene80089.t1	AT1G24230	31.527	203	109	4	98	294	16	194	8.97e-21	89.7
MS.gene80089.t1	AT1G24250	31.019	216	132	4	99	299	17	230	4.87e-21	90.5
MS.gene80089.t1	AT1G24250	28.319	226	124	8	16	214	17	231	1.38e-14	72.8
MS.gene80089.t1	AT1G10450	33.939	165	98	4	1	158	19	179	1.31e-16	80.9
MS.gene80089.t1	AT1G10450	34.868	152	91	2	99	250	36	179	4.80e-14	73.2
MS.gene80089.t1	AT1G10450	33.939	165	98	4	1	158	19	179	1.31e-16	80.9
MS.gene80089.t1	AT1G10450	34.868	152	91	2	99	250	36	179	4.80e-14	73.2
MS.gene80089.t1	AT1G10450	33.939	165	98	4	1	158	70	230	1.60e-16	80.9
MS.gene80089.t1	AT1G10450	34.868	152	91	2	99	250	87	230	5.57e-14	73.2
MS.gene80089.t1	AT3G01320	34.286	175	99	6	11	178	55	220	3.16e-16	79.7
MS.gene80089.t1	AT3G01320	31.250	160	99	2	99	258	60	208	3.04e-13	70.9
MS.gene80089.t1	AT3G01320	34.286	175	99	6	11	178	55	220	3.37e-16	79.7
MS.gene80089.t1	AT3G01320	31.250	160	99	2	99	258	60	208	2.90e-13	70.9
MS.gene80089.t1	AT1G24190	33.702	181	104	6	11	181	12	186	7.91e-16	78.6
MS.gene80089.t1	AT1G24190	33.742	163	97	6	99	258	17	171	3.51e-14	73.6
MS.gene80089.t1	AT1G24190	43.956	91	43	3	174	261	3	88	9.17e-11	63.2
MS.gene80089.t1	AT1G24190	33.702	181	104	6	11	181	12	186	8.05e-16	78.6
MS.gene80089.t1	AT1G24190	33.742	163	97	6	99	258	17	171	3.74e-14	73.6
MS.gene80089.t1	AT1G24190	43.956	91	43	3	174	261	3	88	9.68e-11	63.2
MS.gene80089.t1	AT1G24190	34.940	166	92	6	11	166	12	171	8.07e-16	78.6
MS.gene80089.t1	AT1G24190	33.742	163	97	6	99	258	17	171	3.92e-14	73.6
MS.gene80089.t1	AT1G24190	43.956	91	43	3	174	261	3	88	9.35e-11	63.2
MS.gene80089.t1	AT5G15020	36.184	152	86	4	13	158	52	198	8.17e-16	78.6
MS.gene80089.t1	AT5G15020	30.636	173	109	3	99	268	55	219	2.95e-12	67.8
MS.gene80089.t1	AT5G15020	36.184	152	86	4	13	158	52	198	8.47e-16	78.6
MS.gene80089.t1	AT5G15020	30.636	173	109	3	99	268	55	219	2.81e-12	67.8
MS.gene80089.t1	AT1G24200	32.895	152	93	2	100	251	18	160	2.92e-15	73.6
MS.gene80089.t1	AT1G24200	33.129	163	85	6	9	159	10	160	2.33e-13	68.2
MS.gene80089.t1	AT1G24200	44.578	83	43	2	174	256	3	82	3.81e-12	64.7
MS.gene80089.t1	AT1G70060	35.185	162	95	4	4	158	5	163	5.95e-15	75.9
MS.gene80089.t1	AT1G70060	32.895	152	97	1	99	250	17	163	1.51e-14	74.7
MS.gene80089.t1	AT1G70060	35.185	162	95	4	4	158	5	163	5.95e-15	75.9
MS.gene80089.t1	AT1G70060	32.895	152	97	1	99	250	17	163	1.51e-14	74.7
MS.gene80089.t1	AT1G27280	32.099	162	106	2	107	268	4	161	1.60e-13	69.3
MS.gene80089.t1	AT1G27280	29.949	197	126	4	24	214	4	194	6.03e-13	67.4
MS.gene80089.t1	AT1G59890	34.416	154	86	4	13	158	45	191	2.66e-13	70.9
MS.gene80089.t1	AT1G59890	34.416	154	89	5	99	250	48	191	8.54e-11	63.5
MS.gene80089.t1	AT1G59890	34.416	154	86	4	13	158	45	191	2.87e-13	70.9
MS.gene80089.t1	AT1G59890	34.416	154	89	5	99	250	48	191	9.03e-11	63.2
MS.gene80089.t1	AT1G59890	34.416	154	86	4	13	158	45	191	2.89e-13	70.9
MS.gene80089.t1	AT1G59890	34.416	154	89	5	99	250	48	191	8.55e-11	63.5
MS.gene80089.t1	AT1G59890	34.416	154	86	4	13	158	45	191	2.94e-13	70.9
MS.gene80089.t1	AT1G59890	34.416	154	89	5	99	250	48	191	9.10e-11	63.2
MS.gene80089.t1	AT1G27220	40.260	77	46	0	5	81	6	82	1.92e-12	65.1
MS.gene80089.t1	AT5G15025	40.741	81	48	0	2	82	36	116	2.16e-12	63.5
MS.gene80089.t1	AT1G27270	36.129	155	90	4	103	249	21	174	2.87e-12	65.9
MS.gene80089.t1	AT5G15040	41.791	67	39	0	99	165	6	72	9.95e-12	60.8
MS.gene80089.t1	AT5G15040	37.681	69	43	0	189	257	4	72	4.85e-11	58.9
MS.gene80089.t1	AT5G15040	41.791	67	39	0	99	165	6	72	9.95e-12	60.8
MS.gene80089.t1	AT5G15040	37.681	69	43	0	189	257	4	72	4.85e-11	58.9
MS.gene80089.t1	AT5G15040	41.791	67	39	0	99	165	6	72	9.95e-12	60.8
MS.gene80089.t1	AT5G15040	37.681	69	43	0	189	257	4	72	4.85e-11	58.9

Find 46 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCGCTGTTGCAAACGAATT+TGG	0.102966	1.1:-75195450	None:intergenic
GTCCCAAAAGTAAATCTTTA+TGG	0.189829	1.1:-75195596	None:intergenic
TGAAACTCCTACATGATTTC+AGG	0.203193	1.1:+75195268	MS.gene80089:CDS
AACTCTAAAATCAATTCTTT+TGG	0.284021	1.1:-75195817	None:intergenic
AACTCTCATATCAATTCTTT+TGG	0.286653	1.1:-75195541	None:intergenic
CCGCTGTTGCAAACGAATTT+GGG	0.304866	1.1:-75195449	None:intergenic
AACTCTTCTATCAATTCTTT+TGG	0.305538	1.1:-75195292	None:intergenic
AGACCATAAAGATTTACTTT+TGG	0.338463	1.1:+75195593	MS.gene80089:CDS
TGAAGCAATGACGTTTATAA+AGG	0.363280	1.1:+75195197	MS.gene80089:CDS
CGTCATTGCTTCACCAATCA+AGG	0.390356	1.1:-75195187	None:intergenic
AGTTGCATTTCCAGATAAGA+TGG	0.401348	1.1:+75195476	MS.gene80089:CDS
AGTTGCATTTCAAGATAAGA+TGG	0.422713	1.1:+75195752	MS.gene80089:CDS
ACTTGTGTTTCAAGATAAGA+AGG	0.472355	1.1:+75195227	MS.gene80089:CDS
CCCAAATTCGTTTGCAACAG+CGG	0.472483	1.1:+75195449	MS.gene80089:CDS
AGTTGTCAAAGATGGAGTTA+TGG	0.472541	1.1:+75195311	MS.gene80089:CDS
TTCAACATCTTCTTGCCAGC+AGG	0.472583	1.1:+75195369	MS.gene80089:CDS
AGTAGAACTAATCCCTTGAT+TGG	0.477123	1.1:+75195174	MS.gene80089:CDS
CTTCTATTCTTCTTGCCACC+AGG	0.488485	1.1:+75195405	MS.gene80089:CDS
GATAGAAGAGTTGTCAAAGA+TGG	0.492886	1.1:+75195303	MS.gene80089:CDS
AATCAAGGGATTAGTTCTAC+TGG	0.506014	1.1:-75195172	None:intergenic
GAAACTCCTACATGATTTCA+GGG	0.508203	1.1:+75195269	MS.gene80089:CDS
ACACAAAATCTCACTTCCAT+TGG	0.512949	1.1:+75195917	MS.gene80089:CDS
ACACAAAATCTCACTTCCAT+TGG	0.514630	1.1:+75195641	MS.gene80089:CDS
GATGAACAACAAGGTGATGA+TGG	0.529706	1.1:+75195945	MS.gene80089:CDS
AACGAATTTGGGAATAGAAG+TGG	0.545086	1.1:-75195438	None:intergenic
CTCAACACTTGGTTGCCAGC+GGG	0.549872	1.1:+75195618	MS.gene80089:CDS
TGAACTTCAAGTTGATGAAG+TGG	0.554268	1.1:+75196031	MS.gene80089:CDS
CTCAACACTTGGTTGCCAGC+AGG	0.555626	1.1:+75195894	MS.gene80089:CDS
GATGCTGAACAACAAGGTGA+TGG	0.558029	1.1:+75195993	MS.gene80089:CDS
ACGAATTTGGGAATAGAAGT+GGG	0.571692	1.1:-75195437	None:intergenic
AGTGGGATTTCATCTCCTGC+TGG	0.573929	1.1:-75195384	None:intergenic
TGTTGTTCATCACCATCCAA+TGG	0.575143	1.1:-75195657	None:intergenic
TGTTGTTCATCACCATCCAA+TGG	0.575143	1.1:-75195933	None:intergenic
AGAAGTGGGAATTCATGTCC+TGG	0.583648	1.1:-75195423	None:intergenic
GTCATTGCTTCACCAATCAA+GGG	0.590508	1.1:-75195186	None:intergenic
AAAATCTCACTTCCATTGGA+TGG	0.592611	1.1:+75195645	MS.gene80089:CDS
AAAATCTCACTTCCATTGGA+TGG	0.592611	1.1:+75195921	MS.gene80089:CDS
GGTGATGAACAACAAGGTGA+TGG	0.600828	1.1:+75195666	MS.gene80089:CDS
ACTCAACACTTGGTTGCCAG+CGG	0.601418	1.1:+75195617	MS.gene80089:CDS
GGTGGCAAGAAGAATAGAAG+TGG	0.618772	1.1:-75195402	None:intergenic
TGAACAACAAGGTGATGGAT+CGG	0.624867	1.1:+75195671	MS.gene80089:CDS
CAGAAAGATGCTGAACAACA+AGG	0.627330	1.1:+75195987	MS.gene80089:CDS
GTGGCAAGAAGAATAGAAGT+GGG	0.680483	1.1:-75195401	None:intergenic
AGTGGGAATTCATGTCCTGG+TGG	0.708807	1.1:-75195420	None:intergenic
TTGGATGGTGATGAACAACA+AGG	0.791947	1.1:+75195660	MS.gene80089:CDS
TTGGATGGTGATGAACAACA+AGG	0.791947	1.1:+75195936	MS.gene80089:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AACTCTAAAATCAATTCTTT+TGG	-	chr1.1:75195820-75195839	None:intergenic	20.0%
!!!	AGACCATAAAAATTTACTTT+TGG	+	chr1.1:75195869-75195888	MS.gene80089:CDS	20.0%
!!!	GACCATAAAAATTTACTTTT+GGG	+	chr1.1:75195870-75195889	MS.gene80089:CDS	20.0%
!!	AACTCTCATATCAATTCTTT+TGG	-	chr1.1:75195544-75195563	None:intergenic	25.0%
!!	AACTCTTCTATCAATTCTTT+TGG	-	chr1.1:75195295-75195314	None:intergenic	25.0%
!!	AGACCATAAAGATTTACTTT+TGG	+	chr1.1:75195593-75195612	MS.gene80089:CDS	25.0%
!!	GTCCCAAAAGTAAATTTTTA+TGG	-	chr1.1:75195875-75195894	None:intergenic	25.0%
!!!	GACCATAAAGATTTACTTTT+GGG	+	chr1.1:75195594-75195613	MS.gene80089:CDS	25.0%
!!!	GATTTTAGAGTTTTCAAAGA+AGG	+	chr1.1:75195828-75195847	MS.gene80089:CDS	25.0%
	ACTTGTGTTTCAAGATAAGA+AGG	+	chr1.1:75195227-75195246	MS.gene80089:CDS	30.0%
	AGTTGCATTTCAAGATAAGA+TGG	+	chr1.1:75195752-75195771	MS.gene80089:CDS	30.0%
	GTCCCAAAAGTAAATCTTTA+TGG	-	chr1.1:75195599-75195618	None:intergenic	30.0%
	TGAAGCAATGACGTTTATAA+AGG	+	chr1.1:75195197-75195216	MS.gene80089:CDS	30.0%
!	AGTTTTCAAAGAAGGAATGA+TGG	+	chr1.1:75195560-75195579	MS.gene80089:CDS	30.0%
!	GATATGAGAGTTTTCAAAGA+AGG	+	chr1.1:75195552-75195571	MS.gene80089:CDS	30.0%
!	TAGAGTTTTCAAAGAAGGAA+TGG	+	chr1.1:75195833-75195852	MS.gene80089:CDS	30.0%
!	TCATACTTTTCCATCTTATC+TGG	-	chr1.1:75195489-75195508	None:intergenic	30.0%
	AAAATCTCACTTCCATTGGA+TGG	+	chr1.1:75195645-75195664	MS.gene80089:CDS	35.0%
	AACGAATTTGGGAATAGAAG+TGG	-	chr1.1:75195441-75195460	None:intergenic	35.0%
	ACACAAAATCTCACTTCCAT+TGG	+	chr1.1:75195641-75195660	MS.gene80089:CDS	35.0%
	ACGAATTTGGGAATAGAAGT+GGG	-	chr1.1:75195440-75195459	None:intergenic	35.0%
	AGTAGAACTAATCCCTTGAT+TGG	+	chr1.1:75195174-75195193	MS.gene80089:CDS	35.0%
	AGTTGCATTTCCAGATAAGA+TGG	+	chr1.1:75195476-75195495	MS.gene80089:CDS	35.0%
	AGTTGTCAAAGATGGAGTTA+TGG	+	chr1.1:75195311-75195330	MS.gene80089:CDS	35.0%
	GAAACTCCTACATGATTTCA+GGG	+	chr1.1:75195269-75195288	MS.gene80089:CDS	35.0%
	GATAGAAGAGTTGTCAAAGA+TGG	+	chr1.1:75195303-75195322	MS.gene80089:CDS	35.0%
	TGAAACTCCTACATGATTTC+AGG	+	chr1.1:75195268-75195287	MS.gene80089:CDS	35.0%
!	AGTTTTCAAAGAAGGAATGG+TGG	+	chr1.1:75195836-75195855	MS.gene80089:CDS	35.0%
!!	AATCAAGGGATTAGTTCTAC+TGG	-	chr1.1:75195175-75195194	None:intergenic	35.0%
!!	TGAACTTCAAGTTGATGAAG+TGG	+	chr1.1:75196031-75196050	MS.gene80089:CDS	35.0%
	CAGAAAGATGCTGAACAACA+AGG	+	chr1.1:75195987-75196006	MS.gene80089:CDS	40.0%
	GATGAACAACAAGGTGATGA+TGG	+	chr1.1:75195945-75195964	MS.gene80089:CDS	40.0%
	GTCATTGCTTCACCAATCAA+GGG	-	chr1.1:75195189-75195208	None:intergenic	40.0%
	GTGGCAAGAAGAATAGAAGT+GGG	-	chr1.1:75195404-75195423	None:intergenic	40.0%
	TGTTGTTCATCACCATCCAA+TGG	-	chr1.1:75195660-75195679	None:intergenic	40.0%
!	TTGGATGGTGATGAACAACA+AGG	+	chr1.1:75195660-75195679	MS.gene80089:CDS	40.0%
!	TTTTGGCCCTGAAATCATGT+AGG	-	chr1.1:75195278-75195297	None:intergenic	40.0%
!!	TGAACAACAAGGTGATGGAT+CGG	+	chr1.1:75195671-75195690	MS.gene80089:CDS	40.0%
!!!	TACTTTTGGGACTCAACACT+TGG	+	chr1.1:75195607-75195626	MS.gene80089:CDS	40.0%
	ACCGCTGTTGCAAACGAATT+TGG	-	chr1.1:75195453-75195472	None:intergenic	45.0%
	AGAAGTGGGAATTCATGTCC+TGG	-	chr1.1:75195426-75195445	None:intergenic	45.0%
	CCCAAATTCGTTTGCAACAG+CGG	+	chr1.1:75195449-75195468	MS.gene80089:CDS	45.0%
	CCGCTGTTGCAAACGAATTT+GGG	-	chr1.1:75195452-75195471	None:intergenic	45.0%
	CGTCATTGCTTCACCAATCA+AGG	-	chr1.1:75195190-75195209	None:intergenic	45.0%
	CTTCTATTCTTCTTGCCACC+AGG	+	chr1.1:75195405-75195424	MS.gene80089:CDS	45.0%
	GATGCTGAACAACAAGGTGA+TGG	+	chr1.1:75195993-75196012	MS.gene80089:CDS	45.0%
	GGTGATGAACAACAAGGTGA+TGG	+	chr1.1:75195666-75195685	MS.gene80089:CDS	45.0%
	GGTGGCAAGAAGAATAGAAG+TGG	-	chr1.1:75195405-75195424	None:intergenic	45.0%
	TTCAACATCTTCTTGCCAGC+AGG	+	chr1.1:75195369-75195388	MS.gene80089:CDS	45.0%
!	AGTGAGATTTTGTGTCCTGC+TGG	-	chr1.1:75195912-75195931	None:intergenic	45.0%
	ACTCAACACTTGGTTGCCAG+CGG	+	chr1.1:75195617-75195636	MS.gene80089:CDS	50.0%
	AGTGGGAATTCATGTCCTGG+TGG	-	chr1.1:75195423-75195442	None:intergenic	50.0%
	AGTGGGATTTCATCTCCTGC+TGG	-	chr1.1:75195387-75195406	None:intergenic	50.0%
!	AGTGAGATTTTGTGTCCCGC+TGG	-	chr1.1:75195636-75195655	None:intergenic	50.0%
	CTCAACACTTGGTTGCCAGC+AGG	+	chr1.1:75195618-75195637	MS.gene80089:CDS	55.0%
	CTCAACACTTGGTTGCCAGC+GGG	+	chr1.1:75195618-75195637	MS.gene80089:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	75195162	75196094	75195162	ID=MS.gene80089
chr1.1	mRNA	75195162	75196094	75195162	ID=MS.gene80089.t1;Parent=MS.gene80089
chr1.1	exon	75195162	75196094	75195162	ID=MS.gene80089.t1.exon1;Parent=MS.gene80089.t1
chr1.1	CDS	75195162	75196094	75195162	ID=cds.MS.gene80089.t1;Parent=MS.gene80089.t1

Gene Sequence

>MS.gene80089

ATGAACAGCTCCAGTAGAACTAATCCCTTGATTGGTGAAGCAATGACGTTTATAAAGGATGTAAAACTTGTGTTTCAAGATAAGAAGGAAAAGTTTAATGAATTCATGAAACTCCTACATGATTTCAGGGCCAAAAGAATTGATAGAAGAGTTGTCAAAGATGGAGTTATGGAGTTGTTGAAAGAACATCAAGATTTAATTTCAAGATTCAACATCTTCTTGCCAGCAGGAGATGAAATCCCACTTCTATTCTTCTTGCCACCAGGACATGAATTCCCACTTCTATTCCCAAATTCGTTTGCAACAGCGGTTAAAGTTGCATTTCCAGATAAGATGGAAAAGTATGATGAATTCTTGAAACTCGTAGTTGATTGCAATGCCAAAAGAATTGATATGAGAGTTTTCAAAGAAGGAATGATGGAGTTGTTTAAAGACCATAAAGATTTACTTTTGGGACTCAACACTTGGTTGCCAGCGGGACACAAAATCTCACTTCCATTGGATGGTGATGAACAACAAGGTGATGGATCGGCGCTCAAAGATGAATCAGCACTCGCAGATGCAACAAAGTCGTTTGCAACAGCAGTTAAAGTTGCATTTCAAGATAAGATGGATAAGTATGATGAATTCTTAAAACTCATAATTGATTGTCGTACCAAAAGAATTGATTTTAGAGTTTTCAAAGAAGGAATGGTGGAGTTGTTTAAAGACCATAAAAATTTACTTTTGGGACTCAACACTTGGTTGCCAGCAGGACACAAAATCTCACTTCCATTGGATGGTGATGAACAACAAGGTGATGATGGATTAGAGTTGAAAGATGCACAGAAAGATGCTGAACAACAAGGTGATGGATTAGAGTACAAAGATGAACTTCAAGTTGATGAAGTGGCACTCAAACTCAAAGATGAGCAGAAAGATGACGAACAATAA

Protein sequence

>MS.gene80089.t1

MNSSSRTNPLIGEAMTFIKDVKLVFQDKKEKFNEFMKLLHDFRAKRIDRRVVKDGVMELLKEHQDLISRFNIFLPAGDEIPLLFFLPPGHEFPLLFPNSFATAVKVAFPDKMEKYDEFLKLVVDCNAKRIDMRVFKEGMMELFKDHKDLLLGLNTWLPAGHKISLPLDGDEQQGDGSALKDESALADATKSFATAVKVAFQDKMDKYDEFLKLIIDCRTKRIDFRVFKEGMVELFKDHKNLLLGLNTWLPAGHKISLPLDGDEQQGDDGLELKDAQKDAEQQGDGLEYKDELQVDEVALKLKDEQKDDEQ