Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61075.t1 | AET02443.1 | 100 | 189 | 0 | 0 | 1 | 189 | 29 | 217 | 5.60E-104 | 387.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61075.t1 | Q9VKV8 | 81.4 | 188 | 35 | 0 | 2 | 189 | 1 | 188 | 1.2e-91 | 337.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61075.t1 | G7LHL8 | 100.0 | 189 | 0 | 0 | 1 | 189 | 29 | 217 | 4.0e-104 | 387.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene61075 | -0.837401 | 5.31E-57 | -1.69E-46 |
| MS.gene050029 | MS.gene61075 | -0.805647 | 1.21E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene61075 | -0.802938 | 4.42E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene61075 | -0.826225 | 3.05E-54 | -1.69E-46 |
| MS.gene052037 | MS.gene61075 | -0.801484 | 8.81E-49 | -1.69E-46 |
| MS.gene052239 | MS.gene61075 | 0.801736 | 7.82E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene61075 | -0.827462 | 1.54E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene61075 | -0.82616 | 3.16E-54 | -1.69E-46 |
| MS.gene052582 | MS.gene61075 | -0.846841 | 1.69E-59 | -1.69E-46 |
| MS.gene052584 | MS.gene61075 | -0.857856 | 1.23E-62 | -1.69E-46 |
| MS.gene052586 | MS.gene61075 | -0.836698 | 8.04E-57 | -1.69E-46 |
| MS.gene052673 | MS.gene61075 | 0.804347 | 2.26E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene61075 | -0.812422 | 4.27E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene61075 | -0.814669 | 1.37E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene61075 | 0.876485 | 1.35E-68 | -1.69E-46 |
| MS.gene054576 | MS.gene61075 | -0.817171 | 3.79E-52 | -1.69E-46 |
| MS.gene055166 | MS.gene61075 | -0.80878 | 2.62E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene61075 | -0.800153 | 1.65E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene61075 | -0.816381 | 5.69E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene61075 | -0.80119 | 1.01E-48 | -1.69E-46 |
| MS.gene057012 | MS.gene61075 | -0.801615 | 8.28E-49 | -1.69E-46 |
| MS.gene057314 | MS.gene61075 | -0.816992 | 4.15E-52 | -1.69E-46 |
| MS.gene058294 | MS.gene61075 | -0.803346 | 3.64E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene61075 | -0.806434 | 8.24E-50 | -1.69E-46 |
| MS.gene059584 | MS.gene61075 | -0.810823 | 9.52E-51 | -1.69E-46 |
| MS.gene060373 | MS.gene61075 | -0.807306 | 5.39E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene61075 | -0.809522 | 1.82E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene61075 | 0.870653 | 1.24E-66 | -1.69E-46 |
| MS.gene061040 | MS.gene61075 | 0.803118 | 4.06E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61075.t1 | MTR_8g040630 | 100.000 | 189 | 0 | 0 | 1 | 189 | 29 | 217 | 1.54e-142 | 397 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61075.t1 | AT3G12300 | 87.766 | 188 | 23 | 0 | 2 | 189 | 1 | 188 | 4.50e-129 | 362 |
Find 55 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTTGAGATTCAAGTTT+TGG | 0.209840 | 8.2:-60002174 | MS.gene61075:CDS |
| ATTAGTCCCATATGCTTTCT+TGG | 0.233780 | 8.2:+60001750 | None:intergenic |
| TCTAATGTACTGGAAATAAT+TGG | 0.268445 | 8.2:-60002305 | MS.gene61075:CDS |
| ATACCCAAGGCTGTATAATA+TGG | 0.289391 | 8.2:+60004593 | None:intergenic |
| TGGTATAAAACTTCCATTCT+TGG | 0.289803 | 8.2:-60002228 | MS.gene61075:CDS |
| CATCTTGTGGTCGCTTAATA+TGG | 0.311001 | 8.2:+60002339 | None:intergenic |
| GGAGCAAACCTTTGCAGATA+TGG | 0.317310 | 8.2:-60004469 | MS.gene61075:CDS |
| TAAAGTCAGCCAGGTTAAAC+TGG | 0.353864 | 8.2:+60001773 | None:intergenic |
| TGTGGAGACGCTACGAGTTC+AGG | 0.369293 | 8.2:-60001725 | MS.gene61075:CDS |
| TTTCCATATTATACAGCCTT+GGG | 0.401172 | 8.2:-60004596 | MS.gene61075:intron |
| GACTTTACCAAGAAAGCATA+TGG | 0.429193 | 8.2:-60001757 | MS.gene61075:CDS |
| TTCACAATCATAACCAAGAA+TGG | 0.450408 | 8.2:+60002215 | None:intergenic |
| AGTGTGGCAGCTGGGTCAGC+CGG | 0.451970 | 8.2:+60002251 | None:intergenic |
| CTTTCCATATTATACAGCCT+TGG | 0.463889 | 8.2:-60004597 | MS.gene61075:CDS |
| AGAAATAATGAAAATGTCAT+TGG | 0.467147 | 8.2:-60001513 | MS.gene61075:CDS |
| TTTATACCAAGTGTGGCAGC+TGG | 0.471135 | 8.2:+60002242 | None:intergenic |
| CAAGTTGTACCTTCCAATGC+AGG | 0.471690 | 8.2:-60001626 | MS.gene61075:intron |
| TTCAAGAACACATTCCAGTC+TGG | 0.472331 | 8.2:-60004624 | MS.gene61075:CDS |
| TTGCACTATGCCACTGAGAA+TGG | 0.489210 | 8.2:-60001815 | MS.gene61075:CDS |
| AGACATACAATCTAATGTAC+TGG | 0.495892 | 8.2:-60002315 | MS.gene61075:CDS |
| GATTGTATGTCTTCATCTTG+TGG | 0.496368 | 8.2:+60002326 | None:intergenic |
| CTTTCTTGGTAAAGTCAGCC+AGG | 0.501342 | 8.2:+60001764 | None:intergenic |
| TGGAGGATGGAATTGATGCC+AGG | 0.511205 | 8.2:-60001493 | MS.gene61075:CDS |
| GCTGACCCAGCTGCCACACT+TGG | 0.511732 | 8.2:-60002248 | MS.gene61075:CDS |
| ATGAAAATGTCATTGGAGGA+TGG | 0.513519 | 8.2:-60001506 | MS.gene61075:CDS |
| GAGCAAACCTTTGCAGATAT+GGG | 0.519182 | 8.2:-60004468 | MS.gene61075:CDS |
| TTCTCAAGCGACAGTTTGCA+TGG | 0.520738 | 8.2:+60001701 | None:intergenic |
| GTGTGGCAGCTGGGTCAGCC+GGG | 0.525412 | 8.2:+60002252 | None:intergenic |
| CAGACATCTCATACCTGCAT+TGG | 0.527544 | 8.2:+60001613 | None:intergenic |
| GGAAGGTACAACTTGAACTC+TGG | 0.537228 | 8.2:+60001634 | None:intergenic |
| AATAATGAAAATGTCATTGG+AGG | 0.544133 | 8.2:-60001510 | MS.gene61075:CDS |
| CTTCTCTGATCGTCTCTACT+CGG | 0.546100 | 8.2:-60001671 | MS.gene61075:CDS |
| GTCCACATACATTACGTGCC+CGG | 0.551642 | 8.2:-60002270 | MS.gene61075:CDS |
| TATGCCACTGAGAATGGATG+AGG | 0.552706 | 8.2:-60001809 | MS.gene61075:CDS |
| CATAACATTCAACCATCTCC+TGG | 0.552872 | 8.2:+60001475 | None:intergenic |
| TCTTTGTCCCATATCTGCAA+AGG | 0.557834 | 8.2:+60004461 | None:intergenic |
| TGATCGTCTCTACTCGGAAG+AGG | 0.559398 | 8.2:-60001665 | MS.gene61075:CDS |
| AGCATATGGGACTAATTATG+TGG | 0.561284 | 8.2:-60001743 | MS.gene61075:CDS |
| AGCCGGGCACGTAATGTATG+TGG | 0.564997 | 8.2:+60002268 | None:intergenic |
| CATCTCATACCTGCATTGGA+AGG | 0.576069 | 8.2:+60001617 | None:intergenic |
| ATGCAAACTGTCGCTTGAGA+AGG | 0.579025 | 8.2:-60001699 | MS.gene61075:CDS |
| AGGTACAACTTGAACTCTGG+TGG | 0.579778 | 8.2:+60001637 | None:intergenic |
| GAATCAAATCCAGTTTAACC+TGG | 0.582198 | 8.2:-60001782 | MS.gene61075:CDS |
| AGTGGCATAGTGCAAATGTA+CGG | 0.583812 | 8.2:+60001823 | None:intergenic |
| CACTGAGAATGGATGAGGGT+TGG | 0.589041 | 8.2:-60001804 | MS.gene61075:CDS |
| TTGCAGATATGGGACAAAGA+AGG | 0.596515 | 8.2:-60004458 | MS.gene61075:intron |
| ATATGGAAAGAAATCCAGAC+TGG | 0.597297 | 8.2:+60004610 | None:intergenic |
| TCTGCATGATGAACAATACA+AGG | 0.597722 | 8.2:+60001533 | None:intergenic |
| ACTTTACCAAGAAAGCATAT+GGG | 0.601556 | 8.2:-60001756 | MS.gene61075:CDS |
| TGTTATGTGTAGTTGTGCGT+CGG | 0.611862 | 8.2:-60001459 | MS.gene61075:CDS |
| ATGGAATTGATGCCAGGAGA+TGG | 0.612954 | 8.2:-60001487 | MS.gene61075:CDS |
| TTATACCAAGTGTGGCAGCT+GGG | 0.613588 | 8.2:+60002243 | None:intergenic |
| GGTACAACTTGAACTCTGGT+GGG | 0.629720 | 8.2:+60001638 | None:intergenic |
| CAACCCTCATCCATTCTCAG+TGG | 0.706213 | 8.2:+60001805 | None:intergenic |
| ATGCCACTGAGAATGGATGA+GGG | 0.727443 | 8.2:-60001808 | MS.gene61075:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCGTAAAAAAAATT+CGG | + | chr8.2:60002153-60002172 | None:intergenic | 10.0% |
| !!! | TCAATTTTTTTTATTATTGT+AGG | - | chr8.2:60001585-60001604 | MS.gene61075:intron | 10.0% |
| !!! | TTTTATTATTTTTATGTCAT+AGG | - | chr8.2:60004212-60004231 | MS.gene61075:intron | 10.0% |
| !! | AAAAATCGTAAAAAAAATTC+GGG | + | chr8.2:60002152-60002171 | None:intergenic | 15.0% |
| !! | TAATCAAAGTAAAATGATTT+CGG | + | chr8.2:60001723-60001742 | None:intergenic | 15.0% |
| !!! | TTAAATTGAACCTAATATTT+TGG | - | chr8.2:60002969-60002988 | MS.gene61075:intron | 15.0% |
| !! | AAAACAAAAAAAAATAAGCC+AGG | + | chr8.2:60001940-60001959 | None:intergenic | 20.0% |
| !! | AAACAAAAAAAAATAAGCCA+GGG | + | chr8.2:60001939-60001958 | None:intergenic | 20.0% |
| !! | AAGGAAAAAAAAATAAGTCA+GGG | - | chr8.2:60002294-60002313 | MS.gene61075:CDS | 20.0% |
| !! | AAGTTCTCCATATAATTAAA+TGG | + | chr8.2:60004065-60004084 | None:intergenic | 20.0% |
| !! | ACTTAAGTTAATTGCATAAA+GGG | + | chr8.2:60002693-60002712 | None:intergenic | 20.0% |
| !! | AGAAATAATGAAAATGTCAT+TGG | - | chr8.2:60004562-60004581 | MS.gene61075:intron | 20.0% |
| !! | ATACTAAATGGAAATTTATG+TGG | - | chr8.2:60002811-60002830 | MS.gene61075:intron | 20.0% |
| !! | ATATTAGGTTCAATTTAATC+CGG | + | chr8.2:60002967-60002986 | None:intergenic | 20.0% |
| !! | CTTTCTTCCATTTAATTATA+TGG | - | chr8.2:60004055-60004074 | MS.gene61075:intron | 20.0% |
| !! | TAAGGAAAAAAAAATAAGTC+AGG | - | chr8.2:60002293-60002312 | MS.gene61075:CDS | 20.0% |
| !! | TACTTAAGTTAATTGCATAA+AGG | + | chr8.2:60002694-60002713 | None:intergenic | 20.0% |
| !!! | ACCTAATATTTTGGTTTAAA+AGG | - | chr8.2:60002978-60002997 | MS.gene61075:intron | 20.0% |
| !!! | CCTAATATTTTGGTTTAAAA+GGG | - | chr8.2:60002979-60002998 | MS.gene61075:intron | 20.0% |
| !!! | CTGAAAAAACTGAAATTTTT+AGG | + | chr8.2:60002021-60002040 | None:intergenic | 20.0% |
| !!! | TGATTATTTTATTCTCGTTT+GGG | - | chr8.2:60001737-60001756 | MS.gene61075:CDS | 20.0% |
| !!! | TTGATTATTTTATTCTCGTT+TGG | - | chr8.2:60001736-60001755 | MS.gene61075:CDS | 20.0% |
| ! | AAAAAAATTAGGGAAAAAGC+TGG | + | chr8.2:60001984-60002003 | None:intergenic | 25.0% |
| ! | AAAAAAATTCGGGAAAAAAC+TGG | + | chr8.2:60002142-60002161 | None:intergenic | 25.0% |
| ! | AAAAAATTAGGGAAAAAGCT+GGG | + | chr8.2:60001983-60002002 | None:intergenic | 25.0% |
| ! | AAAAAATTCGGGAAAAAACT+GGG | + | chr8.2:60002141-60002160 | None:intergenic | 25.0% |
| ! | AAATTAAACATCTGCAAGAT+TGG | + | chr8.2:60004011-60004030 | None:intergenic | 25.0% |
| ! | AACAAAAAAAAATAAGCCAG+GGG | + | chr8.2:60001938-60001957 | None:intergenic | 25.0% |
| ! | AAGAAAGACAAGAAAACTTA+TGG | - | chr8.2:60003008-60003027 | MS.gene61075:intron | 25.0% |
| ! | AATAATGAAAATGTCATTGG+AGG | - | chr8.2:60004565-60004584 | MS.gene61075:intron | 25.0% |
| ! | AGGAAAAAAAAATAAGTCAG+GGG | - | chr8.2:60002295-60002314 | MS.gene61075:CDS | 25.0% |
| ! | AGTTGGAATAAAACTTATAG+AGG | - | chr8.2:60002883-60002902 | MS.gene61075:intron | 25.0% |
| ! | CAAAAGAATAAACCAGTTAA+TGG | + | chr8.2:60003569-60003588 | None:intergenic | 25.0% |
| ! | CTACTAGAAAGTCAATTAAA+TGG | + | chr8.2:60003114-60003133 | None:intergenic | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | + | chr8.2:60003467-60003486 | None:intergenic | 25.0% |
| ! | TACTGAAACAGTAATATAGA+TGG | + | chr8.2:60002754-60002773 | None:intergenic | 25.0% |
| ! | TCTAATGTACTGGAAATAAT+TGG | - | chr8.2:60003770-60003789 | MS.gene61075:intron | 25.0% |
| !! | CATTTAATTGACTTTCTAGT+AGG | - | chr8.2:60003112-60003131 | MS.gene61075:intron | 25.0% |
| !! | CCCTTTTAAACCAAAATATT+AGG | + | chr8.2:60002982-60003001 | None:intergenic | 25.0% |
| !! | TAAACTTACGATTTTGTCTT+GGG | - | chr8.2:60003689-60003708 | MS.gene61075:intron | 25.0% |
| !! | TCAAGTGATTAACTTTTACA+GGG | - | chr8.2:60002393-60002412 | MS.gene61075:intron | 25.0% |
| !! | TCAAGTGATTAACTTTTACA+GGG | + | chr8.2:60002412-60002393 | None:intergenic | 25.0% |
| !! | TTAAACTTACGATTTTGTCT+TGG | - | chr8.2:60003688-60003707 | MS.gene61075:intron | 25.0% |
| !! | TTCAAGTGATTAACTTTTAC+AGG | - | chr8.2:60002392-60002411 | MS.gene61075:intron | 25.0% |
| !! | TTCAAGTGATTAACTTTTAC+AGG | + | chr8.2:60002411-60002392 | None:intergenic | 25.0% |
| !! | TTTGAAAAGTTAGTTCTTGA+TGG | - | chr8.2:60003067-60003086 | MS.gene61075:intron | 25.0% |
| !!! | TATTCTTTTGTTTCGTTTCT+TGG | - | chr8.2:60003579-60003598 | MS.gene61075:intron | 25.0% |
| !!! | TCATATGTTTGTTGTGATTA+AGG | - | chr8.2:60001539-60001558 | MS.gene61075:CDS | 25.0% |
| AAAAATTAGGGAAAAAGCTG+GGG | + | chr8.2:60001982-60002001 | None:intergenic | 30.0% | |
| AAAGAAATATCCTAGAGACA+AGG | + | chr8.2:60003195-60003214 | None:intergenic | 30.0% | |
| ACTCCAATGACAAAATAAAC+CGG | - | chr8.2:60002945-60002964 | MS.gene61075:intron | 30.0% | |
| AGACATACAATCTAATGTAC+TGG | - | chr8.2:60003760-60003779 | MS.gene61075:intron | 30.0% | |
| AGAGCAACTTATATTAGGAA+TGG | - | chr8.2:60002845-60002864 | MS.gene61075:intron | 30.0% | |
| CATTAGAGAAACCATTAGAA+AGG | - | chr8.2:60003418-60003437 | MS.gene61075:intron | 30.0% | |
| CTTTCTAATGGTTTCTCTAA+TGG | + | chr8.2:60003420-60003439 | None:intergenic | 30.0% | |
| GACTACATTAGAGAAATGAT+AGG | - | chr8.2:60003263-60003282 | MS.gene61075:intron | 30.0% | |
| GGAAAAGAGCAACTTATATT+AGG | - | chr8.2:60002840-60002859 | MS.gene61075:intron | 30.0% | |
| GGATACATTTATGAGAAAGT+TGG | - | chr8.2:60002866-60002885 | MS.gene61075:intron | 30.0% | |
| TCAAATGGCCTATAATTACA+GGG | - | chr8.2:60002453-60002472 | MS.gene61075:intron | 30.0% | |
| TCAAATGGCCTATAATTACA+GGG | + | chr8.2:60002472-60002453 | None:intergenic | 30.0% | |
| TCACAATGAGTTATTCTTAG+TGG | + | chr8.2:60003039-60003058 | None:intergenic | 30.0% | |
| TGGAAATTTATGTGGATGAA+TGG | - | chr8.2:60002819-60002838 | MS.gene61075:intron | 30.0% | |
| TGGTATAAAACTTCCATTCT+TGG | - | chr8.2:60003847-60003866 | MS.gene61075:intron | 30.0% | |
| TTCAAATGGCCTATAATTAC+AGG | - | chr8.2:60002452-60002471 | MS.gene61075:intron | 30.0% | |
| TTCAAATGGCCTATAATTAC+AGG | + | chr8.2:60002471-60002452 | None:intergenic | 30.0% | |
| TTCACAATCATAACCAAGAA+TGG | + | chr8.2:60003863-60003882 | None:intergenic | 30.0% | |
| TTGGTGTAGTTCATACTAAA+TGG | - | chr8.2:60002799-60002818 | MS.gene61075:intron | 30.0% | |
| TTTCCATATTATACAGCCTT+GGG | - | chr8.2:60001479-60001498 | MS.gene61075:CDS | 30.0% | |
| TTTGATCTGATTCCATTAAC+TGG | - | chr8.2:60003554-60003573 | MS.gene61075:intron | 30.0% | |
| ! | AAACTTACGATTTTGTCTTG+GGG | - | chr8.2:60003690-60003709 | MS.gene61075:intron | 30.0% |
| ! | AATTGACTTTCTAGTAGGAT+AGG | - | chr8.2:60003117-60003136 | MS.gene61075:intron | 30.0% |
| ! | ACTCTTTTTATAGTTGTGGA+TGG | - | chr8.2:60003713-60003732 | MS.gene61075:intron | 30.0% |
| ! | ACTTTACCAAGAAAGCATAT+GGG | - | chr8.2:60004319-60004338 | MS.gene61075:intron | 30.0% |
| ! | AGAAGCACAACTAAACAAAA+GGG | + | chr8.2:60002496-60002515 | None:intergenic | 30.0% |
| ! | TCTACCAACTTTTCTACTAT+AGG | + | chr8.2:60003342-60003361 | None:intergenic | 30.0% |
| ! | TTTTTCGTCCCTGTAATTAT+AGG | - | chr8.2:60001769-60001788 | MS.gene61075:CDS | 30.0% |
| !! | AACCATTAGAAAGGTTTTAG+AGG | - | chr8.2:60003427-60003446 | MS.gene61075:intron | 30.0% |
| !! | AGTTGGTAGAAAATAGACAT+TGG | - | chr8.2:60003352-60003371 | MS.gene61075:intron | 30.0% |
| !! | CACATTTGAGATTCAAGTTT+TGG | - | chr8.2:60003901-60003920 | MS.gene61075:intron | 30.0% |
| !! | GAAACTTGTTATATGTCATG+TGG | - | chr8.2:60002917-60002936 | MS.gene61075:intron | 30.0% |
| !!! | AATCCGGTTTATTTTGTCAT+TGG | + | chr8.2:60002951-60002970 | None:intergenic | 30.0% |
| AATATGTTGAAGAGTGACTG+AGG | - | chr8.2:60002585-60002604 | MS.gene61075:intron | 35.0% | |
| AATGGATCAACTGATGCAAT+AGG | + | chr8.2:60003096-60003115 | None:intergenic | 35.0% | |
| ACGTCAGCAAATTACCAAAA+TGG | - | chr8.2:60001892-60001911 | MS.gene61075:intron | 35.0% | |
| ACGTCAGCAAATTACCAAAA+TGG | + | chr8.2:60001911-60001892 | None:intergenic | 35.0% | |
| AGCAAATTACCAAAATGGCA+TGG | - | chr8.2:60001897-60001916 | MS.gene61075:intron | 35.0% | |
| AGCAAATTACCAAAATGGCA+TGG | + | chr8.2:60001916-60001897 | None:intergenic | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | - | chr8.2:60003335-60003354 | MS.gene61075:intron | 35.0% | |
| AGCATATGGGACTAATTATG+TGG | - | chr8.2:60004332-60004351 | MS.gene61075:intron | 35.0% | |
| AGTCAAGTTAAAAGAGGTAG+AGG | - | chr8.2:60003380-60003399 | MS.gene61075:intron | 35.0% | |
| AGTTTGTGTGATATGTGTAC+TGG | - | chr8.2:60003229-60003248 | MS.gene61075:intron | 35.0% | |
| ATACCCAAGGCTGTATAATA+TGG | + | chr8.2:60001485-60001504 | None:intergenic | 35.0% | |
| ATATGGAAAGAAATCCAGAC+TGG | + | chr8.2:60001468-60001487 | None:intergenic | 35.0% | |
| ATATGTTGAAGAGTGACTGA+GGG | - | chr8.2:60002586-60002605 | MS.gene61075:intron | 35.0% | |
| ATGAAAATGTCATTGGAGGA+TGG | - | chr8.2:60004569-60004588 | MS.gene61075:intron | 35.0% | |
| ATGGATCAACTGATGCAATA+GGG | + | chr8.2:60003095-60003114 | None:intergenic | 35.0% | |
| ATTAGTCCCATATGCTTTCT+TGG | + | chr8.2:60004328-60004347 | None:intergenic | 35.0% | |
| ATTCCATTAGAAAGAGAGTG+GGG | - | chr8.2:60003310-60003329 | MS.gene61075:intron | 35.0% | |
| CAAAGCACAACATTTCTCAA+CGG | + | chr8.2:60002727-60002746 | None:intergenic | 35.0% | |
| CCTATAAGACACACAAACAT+GGG | + | chr8.2:60003984-60004003 | None:intergenic | 35.0% | |
| CTTTCCATATTATACAGCCT+TGG | - | chr8.2:60001478-60001497 | MS.gene61075:CDS | 35.0% | |
| GAATCAAATCCAGTTTAACC+TGG | - | chr8.2:60004293-60004312 | MS.gene61075:intron | 35.0% | |
| GATTCCATTAGAAAGAGAGT+GGG | - | chr8.2:60003309-60003328 | MS.gene61075:intron | 35.0% | |
| GATTGTATGTCTTCATCTTG+TGG | + | chr8.2:60003752-60003771 | None:intergenic | 35.0% | |
| GCAAATTACCAAAATGGCAT+GGG | - | chr8.2:60001898-60001917 | MS.gene61075:intron | 35.0% | |
| GCAAATTACCAAAATGGCAT+GGG | + | chr8.2:60001917-60001898 | None:intergenic | 35.0% | |
| GTTTCTCTAATGGCTTTCTT+AGG | + | chr8.2:60003410-60003429 | None:intergenic | 35.0% | |
| GTTTGTGTGATATGTGTACT+GGG | - | chr8.2:60003230-60003249 | MS.gene61075:intron | 35.0% | |
| TCCTATAAGACACACAAACA+TGG | + | chr8.2:60003985-60004004 | None:intergenic | 35.0% | |
| TCTGCATGATGAACAATACA+AGG | + | chr8.2:60004545-60004564 | None:intergenic | 35.0% | |
| TGATTCCATTAGAAAGAGAG+TGG | - | chr8.2:60003308-60003327 | MS.gene61075:intron | 35.0% | |
| TGGTAGAAAATAGACATTGG+TGG | - | chr8.2:60003355-60003374 | MS.gene61075:intron | 35.0% | |
| TTGTTAGCAGTGACATTAGA+TGG | - | chr8.2:60001651-60001670 | MS.gene61075:CDS | 35.0% | |
| TTTCATCTCAATTGCATGTC+AGG | - | chr8.2:60004514-60004533 | MS.gene61075:intron | 35.0% | |
| ! | AACTTTTACAGGGACGAAAT+GGG | - | chr8.2:60002403-60002422 | MS.gene61075:intron | 35.0% |
| ! | AACTTTTACAGGGACGAAAT+GGG | + | chr8.2:60002422-60002403 | None:intergenic | 35.0% |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr8.2:60003451-60003470 | MS.gene61075:intron | 35.0% |
| ! | CAGAAGCACAACTAAACAAA+AGG | + | chr8.2:60002497-60002516 | None:intergenic | 35.0% |
| ! | CTTTTCGTCCCTGTAATTAT+AGG | + | chr8.2:60002464-60002483 | None:intergenic | 35.0% |
| ! | GACTTTACCAAGAAAGCATA+TGG | - | chr8.2:60004318-60004337 | MS.gene61075:intron | 35.0% |
| ! | GCTGGGGAAAAAATTTTTGA+AGG | + | chr8.2:60001966-60001985 | None:intergenic | 35.0% |
| ! | GTTTAGTTGTGCTTCTGAAA+TGG | - | chr8.2:60002500-60002519 | MS.gene61075:intron | 35.0% |
| ! | TAACTTTTACAGGGACGAAA+TGG | - | chr8.2:60002402-60002421 | MS.gene61075:intron | 35.0% |
| ! | TAACTTTTACAGGGACGAAA+TGG | + | chr8.2:60002421-60002402 | None:intergenic | 35.0% |
| !! | GACCTCTAAAACCTTTCTAA+TGG | + | chr8.2:60003432-60003451 | None:intergenic | 35.0% |
| !! | TGGAAGTTTTATACCAAGTG+TGG | + | chr8.2:60003843-60003862 | None:intergenic | 35.0% |
| !!! | ATTTTGGTAATTTGCTGACG+TGG | - | chr8.2:60002340-60002359 | MS.gene61075:CDS | 35.0% |
| !!! | ATTTTGGTAATTTGCTGACG+TGG | + | chr8.2:60002359-60002340 | None:intergenic | 35.0% |
| AATGGACAGCACAACACATA+AGG | + | chr8.2:60002537-60002556 | None:intergenic | 40.0% | |
| AGTGACTGAGGGATGAAATA+TGG | - | chr8.2:60002597-60002616 | MS.gene61075:intron | 40.0% | |
| AGTGGCATAGTGCAAATGTA+CGG | + | chr8.2:60004255-60004274 | None:intergenic | 40.0% | |
| CACATCAGCCTTTCATAACA+TGG | + | chr8.2:60002563-60002582 | None:intergenic | 40.0% | |
| CATAACATTCAACCATCTCC+TGG | + | chr8.2:60004603-60004622 | None:intergenic | 40.0% | |
| CATCTTGTGGTCGCTTAATA+TGG | + | chr8.2:60003739-60003758 | None:intergenic | 40.0% | |
| CCATTTGGCCATGTTATGAA+AGG | - | chr8.2:60002552-60002571 | MS.gene61075:intron | 40.0% | |
| CCCATGTTTGTGTGTCTTAT+AGG | - | chr8.2:60003981-60004000 | MS.gene61075:intron | 40.0% | |
| CCTTTCATAACATGGCCAAA+TGG | + | chr8.2:60002555-60002574 | None:intergenic | 40.0% | |
| CTCAGGGACGAAAATTCAAA+TGG | - | chr8.2:60002438-60002457 | MS.gene61075:intron | 40.0% | |
| CTCAGGGACGAAAATTCAAA+TGG | + | chr8.2:60002457-60002438 | None:intergenic | 40.0% | |
| CTCTTTCGCAACACAAATGA+GGG | + | chr8.2:60002631-60002650 | None:intergenic | 40.0% | |
| GAGCAAACCTTTGCAGATAT+GGG | - | chr8.2:60001607-60001626 | MS.gene61075:intron | 40.0% | |
| GTGGAGAGTCAAGTTAAAAG+AGG | - | chr8.2:60003374-60003393 | MS.gene61075:intron | 40.0% | |
| TAAAGTCAGCCAGGTTAAAC+TGG | + | chr8.2:60004305-60004324 | None:intergenic | 40.0% | |
| TATGAACTACACCAAGAGCA+TGG | + | chr8.2:60002794-60002813 | None:intergenic | 40.0% | |
| TATGTGTTGTGCTGTCCATT+TGG | - | chr8.2:60002537-60002556 | MS.gene61075:intron | 40.0% | |
| TCTCTTTCGCAACACAAATG+AGG | + | chr8.2:60002632-60002651 | None:intergenic | 40.0% | |
| TCTTTGTCCCATATCTGCAA+AGG | + | chr8.2:60001617-60001636 | None:intergenic | 40.0% | |
| TGACGTGGCAGTGATTAAAA+GGG | - | chr8.2:60002355-60002374 | MS.gene61075:intron | 40.0% | |
| TGACGTGGCAGTGATTAAAA+GGG | + | chr8.2:60002374-60002355 | None:intergenic | 40.0% | |
| TGTTATGTGTAGTTGTGCGT+CGG | - | chr8.2:60004616-60004635 | MS.gene61075:CDS | 40.0% | |
| TTCAAGAACACATTCCAGTC+TGG | - | chr8.2:60001451-60001470 | MS.gene61075:CDS | 40.0% | |
| TTCCATTAGAAAGAGAGTGG+GGG | - | chr8.2:60003311-60003330 | MS.gene61075:intron | 40.0% | |
| TTGCAGATATGGGACAAAGA+AGG | - | chr8.2:60001617-60001636 | MS.gene61075:intron | 40.0% | |
| ! | GACACATTTTCCTTGTCTCT+AGG | - | chr8.2:60003182-60003201 | MS.gene61075:intron | 40.0% |
| ! | GGGGACTCTTTTTATAGTTG+TGG | - | chr8.2:60003709-60003728 | MS.gene61075:intron | 40.0% |
| !! | GTTGTGCTTCTGAAATGGTT+AGG | - | chr8.2:60002505-60002524 | MS.gene61075:intron | 40.0% |
| !!! | GGTTTTAGAGGTCAATGAGT+TGG | - | chr8.2:60003439-60003458 | MS.gene61075:intron | 40.0% |
| AGGTACAACTTGAACTCTGG+TGG | + | chr8.2:60004441-60004460 | None:intergenic | 45.0% | |
| ATACAGCCTTGGGTATGATG+TGG | - | chr8.2:60001489-60001508 | MS.gene61075:CDS | 45.0% | |
| ATGCCACTGAGAATGGATGA+GGG | - | chr8.2:60004267-60004286 | MS.gene61075:intron | 45.0% | |
| ATGGAATTGATGCCAGGAGA+TGG | - | chr8.2:60004588-60004607 | MS.gene61075:intron | 45.0% | |
| CAAGTTGTACCTTCCAATGC+AGG | - | chr8.2:60004449-60004468 | MS.gene61075:intron | 45.0% | |
| CAGACATCTCATACCTGCAT+TGG | + | chr8.2:60004465-60004484 | None:intergenic | 45.0% | |
| CATCTCATACCTGCATTGGA+AGG | + | chr8.2:60004461-60004480 | None:intergenic | 45.0% | |
| CTGACGTGGCAGTGATTAAA+AGG | - | chr8.2:60002354-60002373 | MS.gene61075:intron | 45.0% | |
| CTGACGTGGCAGTGATTAAA+AGG | + | chr8.2:60002373-60002354 | None:intergenic | 45.0% | |
| CTTCTCTGATCGTCTCTACT+CGG | - | chr8.2:60004404-60004423 | MS.gene61075:intron | 45.0% | |
| CTTTCTTGGTAAAGTCAGCC+AGG | + | chr8.2:60004314-60004333 | None:intergenic | 45.0% | |
| GACGTGGCAGTGATTAAAAG+GGG | - | chr8.2:60002356-60002375 | MS.gene61075:intron | 45.0% | |
| GACGTGGCAGTGATTAAAAG+GGG | + | chr8.2:60002375-60002356 | None:intergenic | 45.0% | |
| GATAGGTCGTGGTTGTTTGA+AGG | - | chr8.2:60003134-60003153 | MS.gene61075:intron | 45.0% | |
| GCACAACATTTCTCAACGGA+TGG | + | chr8.2:60002723-60002742 | None:intergenic | 45.0% | |
| GGAAATGACGAAAATACCCC+TGG | - | chr8.2:60001919-60001938 | MS.gene61075:intron | 45.0% | |
| GGAGCAAACCTTTGCAGATA+TGG | - | chr8.2:60001606-60001625 | MS.gene61075:intron | 45.0% | |
| GGTACAACTTGAACTCTGGT+GGG | + | chr8.2:60004440-60004459 | None:intergenic | 45.0% | |
| TACCCCCACTCTCTTTCTAA+TGG | + | chr8.2:60003316-60003335 | None:intergenic | 45.0% | |
| TATGCCACTGAGAATGGATG+AGG | - | chr8.2:60004266-60004285 | MS.gene61075:intron | 45.0% | |
| TCACAATACCACCATGCTCT+TGG | - | chr8.2:60002780-60002799 | MS.gene61075:intron | 45.0% | |
| TTATACCAAGTGTGGCAGCT+GGG | + | chr8.2:60003835-60003854 | None:intergenic | 45.0% | |
| TTCTCAAGCGACAGTTTGCA+TGG | + | chr8.2:60004377-60004396 | None:intergenic | 45.0% | |
| TTGCACTATGCCACTGAGAA+TGG | - | chr8.2:60004260-60004279 | MS.gene61075:intron | 45.0% | |
| TTTATACCAAGTGTGGCAGC+TGG | + | chr8.2:60003836-60003855 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr8.2:60003520-60003539 | None:intergenic | 45.0% |
| ! | ACGTGCATCGACAGCAATTT+AGG | + | chr8.2:60004179-60004198 | None:intergenic | 45.0% |
| ! | ATGCAAACTGTCGCTTGAGA+AGG | - | chr8.2:60004376-60004395 | MS.gene61075:intron | 45.0% |
| ! | ATGGGAGGATTAGTAAGCTC+AGG | - | chr8.2:60002421-60002440 | MS.gene61075:intron | 45.0% |
| ! | ATGGGAGGATTAGTAAGCTC+AGG | + | chr8.2:60002440-60002421 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr8.2:60003521-60003540 | None:intergenic | 45.0% |
| ! | CTTTCTAGTAGGATAGGTCG+TGG | - | chr8.2:60003123-60003142 | MS.gene61075:intron | 45.0% |
| ! | GGAAGGTACAACTTGAACTC+TGG | + | chr8.2:60004444-60004463 | None:intergenic | 45.0% |
| ! | TGGGAGGATTAGTAAGCTCA+GGG | - | chr8.2:60002422-60002441 | MS.gene61075:intron | 45.0% |
| ! | TGGGAGGATTAGTAAGCTCA+GGG | + | chr8.2:60002441-60002422 | None:intergenic | 45.0% |
| ! | TTTTACAGGGACGAAATGGG+AGG | - | chr8.2:60002406-60002425 | MS.gene61075:intron | 45.0% |
| ! | TTTTACAGGGACGAAATGGG+AGG | + | chr8.2:60002425-60002406 | None:intergenic | 45.0% |
| !! | CGTCATTTCCCATGCCATTT+TGG | - | chr8.2:60002324-60002343 | MS.gene61075:CDS | 45.0% |
| !! | CGTCATTTCCCATGCCATTT+TGG | + | chr8.2:60002343-60002324 | None:intergenic | 45.0% |
| !! | AAAAATTGTAAAAAAAAATT+AGG | + | chr8.2:60001995-60002014 | None:intergenic | 5.0% |
| !! | AAAATTGTAAAAAAAAATTA+GGG | + | chr8.2:60001994-60002013 | None:intergenic | 5.0% |
| !! | TTAAAAATCATAAAAAATTT+CGG | + | chr8.2:60002065-60002084 | None:intergenic | 5.0% |
| !!! | AAATTTTGAAATTTTTTTTA+AGG | - | chr8.2:60002275-60002294 | MS.gene61075:CDS | 5.0% |
| AGCCAACCACATCATACCCA+AGG | + | chr8.2:60001498-60001517 | None:intergenic | 50.0% | |
| AGCCTTGGGTATGATGTGGT+TGG | - | chr8.2:60001493-60001512 | MS.gene61075:CDS | 50.0% | |
| CAACCCTCATCCATTCTCAG+TGG | + | chr8.2:60004273-60004292 | None:intergenic | 50.0% | |
| CACTGAGAATGGATGAGGGT+TGG | - | chr8.2:60004271-60004290 | MS.gene61075:intron | 50.0% | |
| CATGGGCAGACTTACACACT+TGG | + | chr8.2:60003967-60003986 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr8.2:60003519-60003538 | MS.gene61075:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr8.2:60003516-60003535 | None:intergenic | 50.0% | |
| GCAGTGATTAAAAGGGGCGA+GGG | - | chr8.2:60002362-60002381 | MS.gene61075:intron | 50.0% | |
| GCAGTGATTAAAAGGGGCGA+GGG | + | chr8.2:60002381-60002362 | None:intergenic | 50.0% | |
| GTCCACATACATTACGTGCC+CGG | - | chr8.2:60003805-60003824 | MS.gene61075:intron | 50.0% | |
| TGATCGTCTCTACTCGGAAG+AGG | - | chr8.2:60004410-60004429 | MS.gene61075:intron | 50.0% | |
| TGGAGGATGGAATTGATGCC+AGG | - | chr8.2:60004582-60004601 | MS.gene61075:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr8.2:60003522-60003541 | None:intergenic | 50.0% |
| ! | GAACTACACCAAGAGCATGG+TGG | + | chr8.2:60002791-60002810 | None:intergenic | 50.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr8.2:60003508-60003527 | None:intergenic | 55.0% | |
| AGCCGGGCACGTAATGTATG+TGG | + | chr8.2:60003810-60003829 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr8.2:60003507-60003526 | MS.gene61075:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr8.2:60003514-60003533 | MS.gene61075:intron | 55.0% | |
| GGCAGTGATTAAAAGGGGCG+AGG | - | chr8.2:60002361-60002380 | MS.gene61075:intron | 55.0% | |
| GGCAGTGATTAAAAGGGGCG+AGG | + | chr8.2:60002380-60002361 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr8.2:60003508-60003527 | MS.gene61075:intron | 55.0% | |
| TGTGGAGACGCTACGAGTTC+AGG | - | chr8.2:60004350-60004369 | MS.gene61075:intron | 55.0% | |
| AGTGTGGCAGCTGGGTCAGC+CGG | + | chr8.2:60003827-60003846 | None:intergenic | 65.0% | |
| GCTGACCCAGCTGCCACACT+TGG | - | chr8.2:60003827-60003846 | MS.gene61075:intron | 65.0% | |
| GTGTGGCAGCTGGGTCAGCC+GGG | + | chr8.2:60003826-60003845 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 60001445 | 60004652 | 60001445 | ID=MS.gene61075 |
| chr8.2 | mRNA | 60001445 | 60004652 | 60001445 | ID=MS.gene61075.t1;Parent=MS.gene61075 |
| chr8.2 | exon | 60004597 | 60004652 | 60004597 | ID=MS.gene61075.t1.exon1;Parent=MS.gene61075.t1 |
| chr8.2 | CDS | 60004597 | 60004652 | 60004597 | ID=cds.MS.gene61075.t1;Parent=MS.gene61075.t1 |
| chr8.2 | exon | 60004459 | 60004490 | 60004459 | ID=MS.gene61075.t1.exon2;Parent=MS.gene61075.t1 |
| chr8.2 | CDS | 60004459 | 60004490 | 60004459 | ID=cds.MS.gene61075.t1;Parent=MS.gene61075.t1 |
| chr8.2 | exon | 60002130 | 60002371 | 60002130 | ID=MS.gene61075.t1.exon3;Parent=MS.gene61075.t1 |
| chr8.2 | CDS | 60002130 | 60002371 | 60002130 | ID=cds.MS.gene61075.t1;Parent=MS.gene61075.t1 |
| chr8.2 | exon | 60001627 | 60001863 | 60001627 | ID=MS.gene61075.t1.exon4;Parent=MS.gene61075.t1 |
| chr8.2 | CDS | 60001627 | 60001863 | 60001627 | ID=cds.MS.gene61075.t1;Parent=MS.gene61075.t1 |
| chr8.2 | exon | 60001445 | 60001561 | 60001445 | ID=MS.gene61075.t1.exon5;Parent=MS.gene61075.t1 |
| chr8.2 | CDS | 60001445 | 60001561 | 60001445 | ID=cds.MS.gene61075.t1;Parent=MS.gene61075.t1 |
| Gene Sequence |
| Protein sequence |
