Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62430.t1 | RHN63924.1 | 96.9 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 1.10E-105 | 392.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62430.t1 | A0A396IHY1 | 96.9 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 8.2e-106 | 392.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049983 | MS.gene62430 | 0.817885 | 2.61E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene62430 | 0.803373 | 3.60E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene62430 | 0.808352 | 3.23E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene62430 | 0.800708 | 1.27E-48 | -1.69E-46 |
| MS.gene051003 | MS.gene62430 | 0.83006 | 3.63E-55 | -1.69E-46 |
| MS.gene051363 | MS.gene62430 | 0.814503 | 1.49E-51 | -1.69E-46 |
| MS.gene051365 | MS.gene62430 | 0.803338 | 3.66E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene62430 | 0.803585 | 3.25E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene62430 | 0.814561 | 1.45E-51 | -1.69E-46 |
| MS.gene053058 | MS.gene62430 | 0.80064 | 1.31E-48 | -1.69E-46 |
| MS.gene054004 | MS.gene62430 | 0.815589 | 8.56E-52 | -1.69E-46 |
| MS.gene05517 | MS.gene62430 | 0.821045 | 4.97E-53 | -1.69E-46 |
| MS.gene055841 | MS.gene62430 | 0.80705 | 6.11E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene62430 | 0.809019 | 2.33E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene62430 | 0.825492 | 4.55E-54 | -1.69E-46 |
| MS.gene057392 | MS.gene62430 | 0.806958 | 6.39E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene62430 | 0.804015 | 2.65E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene62430 | 0.806994 | 6.28E-50 | -1.69E-46 |
| MS.gene058781 | MS.gene62430 | 0.806667 | 7.36E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene62430 | 0.830232 | 3.30E-55 | -1.69E-46 |
| MS.gene058976 | MS.gene62430 | 0.815648 | 8.30E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene62430 | 0.806526 | 7.88E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene62430 | 0.813828 | 2.10E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene62430 | 0.801002 | 1.11E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62430.t1 | MTR_4g114105 | 96.703 | 182 | 6 | 0 | 13 | 194 | 1 | 182 | 2.71e-131 | 366 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62430.t1 | AT5G20120 | 63.736 | 182 | 60 | 2 | 13 | 194 | 13 | 188 | 3.51e-70 | 211 |
| MS.gene62430.t1 | AT5G20120 | 63.736 | 182 | 60 | 2 | 13 | 194 | 13 | 188 | 3.51e-70 | 211 |
Find 45 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGCTTTGTGGCCAATT+TGG | 0.157438 | 8.2:-14297357 | MS.gene62430:CDS |
| TTTCTTGACGATTCCTCTTC+TGG | 0.249847 | 8.2:-14297332 | MS.gene62430:intron |
| CTAGGTTCACCTTTGCTTTG+TGG | 0.328652 | 8.2:-14297366 | MS.gene62430:intron |
| GCACAGGAGATATATGAAAT+TGG | 0.329409 | 8.2:+14298657 | None:intergenic |
| TGCCTCCGAGTCCTCCTAAA+AGG | 0.336735 | 8.2:-14298756 | MS.gene62430:CDS |
| TGTGCAGTTTACACTATTCA+TGG | 0.346494 | 8.2:-14297208 | MS.gene62430:intron |
| CCTCTATATCTTGGGATGAT+AGG | 0.347964 | 8.2:-14297632 | MS.gene62430:CDS |
| ATCAGCTGCATTGCAATGTC+TGG | 0.355250 | 8.2:-14298889 | None:intergenic |
| TGCAGACTGCCTCTATATCT+TGG | 0.356363 | 8.2:-14297641 | MS.gene62430:intron |
| TTGCCATTCGCCACTGGATT+CGG | 0.365198 | 8.2:-14297497 | MS.gene62430:CDS |
| GGAACACCGGTTGGGGCAGG+TGG | 0.367107 | 8.2:-14298865 | MS.gene62430:CDS |
| TTTCATTTATACAAGTATCT+TGG | 0.379944 | 8.2:-14297588 | MS.gene62430:CDS |
| TATCTTGGGATGATAGGTAT+TGG | 0.427837 | 8.2:-14297626 | MS.gene62430:CDS |
| AATGAGGCAGAGACATAGCC+AGG | 0.433939 | 8.2:-14298839 | MS.gene62430:CDS |
| GTTTGTTTCTTACAAGCAAA+AGG | 0.450655 | 8.2:+14297466 | None:intergenic |
| ATCGTCAAGAAACTCCAAAT+TGG | 0.465863 | 8.2:+14297343 | None:intergenic |
| TTTATACAAGTATCTTGGCT+TGG | 0.469511 | 8.2:-14297583 | MS.gene62430:CDS |
| GCAGACTGCCTCTATATCTT+GGG | 0.469604 | 8.2:-14297640 | MS.gene62430:intron |
| AAAATGGGGATTAAAGAAAT+GGG | 0.471320 | 8.2:-14297540 | MS.gene62430:CDS |
| ATTAAACCACCTGCCCCAAC+CGG | 0.474646 | 8.2:+14298859 | None:intergenic |
| CCTATCATCCCAAGATATAG+AGG | 0.476285 | 8.2:+14297632 | None:intergenic |
| TGCTAGTAGTGGTGATGACT+TGG | 0.501772 | 8.2:-14298812 | MS.gene62430:CDS |
| GCCATGACGATCGTATTAGA+AGG | 0.509433 | 8.2:-14298636 | MS.gene62430:intron |
| ACAGTGTTGCCATTCGCCAC+TGG | 0.512752 | 8.2:-14297503 | MS.gene62430:CDS |
| TCAGCTGCATTGCAATGTCT+GGG | 0.515671 | 8.2:-14298888 | None:intergenic |
| TTGGGGCAGGTGGTTTAATG+AGG | 0.517419 | 8.2:-14298855 | MS.gene62430:CDS |
| CGAGTCCTCCTAAAAGGACA+TGG | 0.538660 | 8.2:-14298750 | MS.gene62430:CDS |
| TCTTGGCTTGGAGCGTTCGA+AGG | 0.539897 | 8.2:-14297571 | MS.gene62430:CDS |
| TAATACGATCGTCATGGCAC+AGG | 0.555324 | 8.2:+14298641 | None:intergenic |
| GGAATTCATCATTCTGAGGC+CGG | 0.559074 | 8.2:+14297142 | None:intergenic |
| TACACTATTCATGGCATGCA+TGG | 0.561683 | 8.2:-14297199 | MS.gene62430:CDS |
| TTGTTGATACATACCAGAAG+AGG | 0.562376 | 8.2:+14297319 | None:intergenic |
| TGGAAGACGATGCATGTTCG+AGG | 0.564813 | 8.2:-14298792 | MS.gene62430:CDS |
| ATTCCGAATCCAGTGGCGAA+TGG | 0.603263 | 8.2:+14297494 | None:intergenic |
| CCAAATTGGCCACAAAGCAA+AGG | 0.609872 | 8.2:+14297357 | None:intergenic |
| CAGCTGCATTGCAATGTCTG+GGG | 0.611161 | 8.2:-14298887 | None:intergenic |
| AGCTGCATTGCAATGTCTGG+GGG | 0.611848 | 8.2:-14298886 | None:intergenic |
| AGCCAGGGTTATGCTAGTAG+TGG | 0.628875 | 8.2:-14298823 | MS.gene62430:CDS |
| CACCACTACTAGCATAACCC+TGG | 0.638272 | 8.2:+14298821 | None:intergenic |
| ACCTTCTAATACGATCGTCA+TGG | 0.649054 | 8.2:+14298635 | None:intergenic |
| GTACGGAATTCATCATTCTG+AGG | 0.654930 | 8.2:+14297138 | None:intergenic |
| TGTTTCTTACAAGCAAAAGG+AGG | 0.657267 | 8.2:+14297469 | None:intergenic |
| ACTATTCATGGCATGCATGG+TGG | 0.676070 | 8.2:-14297196 | MS.gene62430:CDS |
| GGAGGTGATTCCGAATCCAG+TGG | 0.689356 | 8.2:+14297487 | None:intergenic |
| ATGAGGCAGAGACATAGCCA+GGG | 0.708201 | 8.2:-14298838 | MS.gene62430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAGTTGTATTTATAAA+CGG | - | chr8.2:14297429-14297448 | MS.gene62430:intron | 10.0% |
| !! | AAATTTAGAGGAAAAATAAC+AGG | + | chr8.2:14297883-14297902 | None:intergenic | 20.0% |
| !! | AAGTAATAAAACATAGTAAG+CGG | + | chr8.2:14298722-14298741 | None:intergenic | 20.0% |
| !! | AATTTAGAGGAAAAATAACA+GGG | + | chr8.2:14297882-14297901 | None:intergenic | 20.0% |
| !! | CACGACAAAAAAAAATTAAA+AGG | - | chr8.2:14297710-14297729 | MS.gene62430:intron | 20.0% |
| !! | TACTTATATAATAGGAAAGA+GGG | + | chr8.2:14298178-14298197 | None:intergenic | 20.0% |
| !! | TTTCATTTATACAAGTATCT+TGG | - | chr8.2:14298417-14298436 | MS.gene62430:intron | 20.0% |
| !!! | GTTATCACAATTTCAATTTT+TGG | + | chr8.2:14298758-14298777 | None:intergenic | 20.0% |
| !!! | TATGAACTGATTTTATGTTT+AGG | + | chr8.2:14298023-14298042 | None:intergenic | 20.0% |
| !!! | TGTTATTTTTCCTCTAAATT+TGG | - | chr8.2:14297882-14297901 | MS.gene62430:intron | 20.0% |
| !!! | TGTTTAAAATCCAAATTTAG+AGG | + | chr8.2:14297895-14297914 | None:intergenic | 20.0% |
| ! | AAAAATGGGGATTAAAGAAA+TGG | - | chr8.2:14298464-14298483 | MS.gene62430:intron | 25.0% |
| ! | AAAATGGGGATTAAAGAAAT+GGG | - | chr8.2:14298465-14298484 | MS.gene62430:intron | 25.0% |
| ! | AAGTTCACTTTAATGTGTAA+CGG | - | chr8.2:14297404-14297423 | MS.gene62430:intron | 25.0% |
| ! | ATCTTAAATTTCATCAAACC+GGG | + | chr8.2:14298201-14298220 | None:intergenic | 25.0% |
| ! | CATCATATTTGAAAAGCAAA+TGG | + | chr8.2:14297834-14297853 | None:intergenic | 25.0% |
| ! | CATCTTAAATTTCATCAAAC+CGG | + | chr8.2:14298202-14298221 | None:intergenic | 25.0% |
| ! | GATTATGAAAATTCCGATAT+TGG | + | chr8.2:14298328-14298347 | None:intergenic | 25.0% |
| ! | GTACTTATATAATAGGAAAG+AGG | + | chr8.2:14298179-14298198 | None:intergenic | 25.0% |
| ! | TTAAGATAAACAGTATCCAA+CGG | - | chr8.2:14298117-14298136 | MS.gene62430:intron | 25.0% |
| ! | TTTCCTATTATATAAGTACC+CGG | - | chr8.2:14298180-14298199 | MS.gene62430:intron | 25.0% |
| !!! | GCTGCTTTTATTTTATACTT+TGG | - | chr8.2:14297314-14297333 | MS.gene62430:intron | 25.0% |
| !!! | TAATCCCTTATCTCATTTTT+GGG | - | chr8.2:14298832-14298851 | MS.gene62430:CDS | 25.0% |
| AAACCGGGTACTTATATAAT+AGG | + | chr8.2:14298186-14298205 | None:intergenic | 30.0% | |
| AAATTTCGATATCGTCAAAC+AGG | + | chr8.2:14298237-14298256 | None:intergenic | 30.0% | |
| AACTCATATCTGATTAAACC+AGG | + | chr8.2:14298067-14298086 | None:intergenic | 30.0% | |
| ACTTGACTTCATACCAATAT+CGG | - | chr8.2:14298312-14298331 | MS.gene62430:intron | 30.0% | |
| AGAATCCCAAAAATGAGATA+AGG | + | chr8.2:14298840-14298859 | None:intergenic | 30.0% | |
| ATAACTCGACAAAAAACATC+AGG | - | chr8.2:14297770-14297789 | MS.gene62430:intron | 30.0% | |
| CAATTGGATGTGGAAATTAT+GGG | - | chr8.2:14297937-14297956 | MS.gene62430:intron | 30.0% | |
| CATATTTGAAAAGCAAATGG+TGG | + | chr8.2:14297831-14297850 | None:intergenic | 30.0% | |
| GAATCCCAAAAATGAGATAA+GGG | + | chr8.2:14298839-14298858 | None:intergenic | 30.0% | |
| GTTACACATTAAAGTGAACT+TGG | + | chr8.2:14297405-14297424 | None:intergenic | 30.0% | |
| TATATAATAGGAAAGAGGGA+AGG | + | chr8.2:14298174-14298193 | None:intergenic | 30.0% | |
| TCAATTGGATGTGGAAATTA+TGG | - | chr8.2:14297936-14297955 | MS.gene62430:intron | 30.0% | |
| TCGAAGGTTTGATGAAAAAT+GGG | - | chr8.2:14298450-14298469 | MS.gene62430:intron | 30.0% | |
| TCTCGATGTTCATTTATTGA+TGG | - | chr8.2:14297470-14297489 | MS.gene62430:intron | 30.0% | |
| TTCGAAGGTTTGATGAAAAA+TGG | - | chr8.2:14298449-14298468 | MS.gene62430:intron | 30.0% | |
| TTTATACAAGTATCTTGGCT+TGG | - | chr8.2:14298422-14298441 | MS.gene62430:intron | 30.0% | |
| TTTCTTTATTGTGCCAAAGA+TGG | - | chr8.2:14297495-14297514 | MS.gene62430:CDS | 30.0% | |
| ! | ATTTGTTTGTTGAGGTGTTT+AGG | - | chr8.2:14297526-14297545 | MS.gene62430:CDS | 30.0% |
| ! | GTAATCCCTTATCTCATTTT+TGG | - | chr8.2:14298831-14298850 | MS.gene62430:CDS | 30.0% |
| ! | GTTTGTTTCTTACAAGCAAA+AGG | + | chr8.2:14298542-14298561 | None:intergenic | 30.0% |
| !!! | TATCTCATTTTTGGGATTCT+TGG | - | chr8.2:14298840-14298859 | MS.gene62430:CDS | 30.0% |
| ATCGTCAAGAAACTCCAAAT+TGG | + | chr8.2:14298665-14298684 | None:intergenic | 35.0% | |
| ATTCACTTCAAAACATCCGT+TGG | + | chr8.2:14298136-14298155 | None:intergenic | 35.0% | |
| ATTTCCACATCCAATTGACA+AGG | + | chr8.2:14297934-14297953 | None:intergenic | 35.0% | |
| CGAAGGTTTGATGAAAAATG+GGG | - | chr8.2:14298451-14298470 | MS.gene62430:intron | 35.0% | |
| GCACAGGAGATATATGAAAT+TGG | + | chr8.2:14297351-14297370 | None:intergenic | 35.0% | |
| TATCTTGGGATGATAGGTAT+TGG | - | chr8.2:14298379-14298398 | MS.gene62430:intron | 35.0% | |
| TGTAAACTGCACAACATAAG+AGG | + | chr8.2:14298790-14298809 | None:intergenic | 35.0% | |
| TGTGCAGTTTACACTATTCA+TGG | - | chr8.2:14298797-14298816 | MS.gene62430:CDS | 35.0% | |
| TGTTTCTTACAAGCAAAAGG+AGG | + | chr8.2:14298539-14298558 | None:intergenic | 35.0% | |
| TTGTATTTATAAACGGCTGC+TGG | - | chr8.2:14297436-14297455 | MS.gene62430:intron | 35.0% | |
| TTGTTGATACATACCAGAAG+AGG | + | chr8.2:14298689-14298708 | None:intergenic | 35.0% | |
| TTTCCACATCCAATTGACAA+GGG | + | chr8.2:14297933-14297952 | None:intergenic | 35.0% | |
| ! | AGATGCTCGAGAATTTTCTT+TGG | - | chr8.2:14297282-14297301 | MS.gene62430:intron | 35.0% |
| ! | TAGCAGGAATTTGTTTGTTG+AGG | - | chr8.2:14297518-14297537 | MS.gene62430:CDS | 35.0% |
| ! | TTTTGCTTACTCCCTATCTT+TGG | - | chr8.2:14298611-14298630 | MS.gene62430:intron | 35.0% |
| !!! | ACGGATGTTTTGAAGTGAAT+CGG | - | chr8.2:14298136-14298155 | MS.gene62430:intron | 35.0% |
| AACCTAGAGATGCCAAAGAT+AGG | + | chr8.2:14298626-14298645 | None:intergenic | 40.0% | |
| ACCTAGAGATGCCAAAGATA+GGG | + | chr8.2:14298625-14298644 | None:intergenic | 40.0% | |
| ACCTTCTAATACGATCGTCA+TGG | + | chr8.2:14297373-14297392 | None:intergenic | 40.0% | |
| AGATAGGGAGTAAGCAAAAC+AGG | + | chr8.2:14298610-14298629 | None:intergenic | 40.0% | |
| CAAAACATGATGTCAGTTCC+TGG | - | chr8.2:14298046-14298065 | MS.gene62430:intron | 40.0% | |
| CAAATTCCTGCTACCATCTT+TGG | + | chr8.2:14297511-14297530 | None:intergenic | 40.0% | |
| CCTATCATCCCAAGATATAG+AGG | + | chr8.2:14298376-14298395 | None:intergenic | 40.0% | |
| CCTCTATATCTTGGGATGAT+AGG | - | chr8.2:14298373-14298392 | MS.gene62430:intron | 40.0% | |
| GATAGGGAGTAAGCAAAACA+GGG | + | chr8.2:14298609-14298628 | None:intergenic | 40.0% | |
| GTACGGAATTCATCATTCTG+AGG | + | chr8.2:14298870-14298889 | None:intergenic | 40.0% | |
| TACACTATTCATGGCATGCA+TGG | - | chr8.2:14298806-14298825 | MS.gene62430:CDS | 40.0% | |
| TGATTGATGCCCTTGTCAAT+TGG | - | chr8.2:14297921-14297940 | MS.gene62430:intron | 40.0% | |
| TTTCTTGACGATTCCTCTTC+TGG | - | chr8.2:14298673-14298692 | MS.gene62430:CDS | 40.0% | |
| ! | ATCTCGATCCATGTCCTTTT+AGG | + | chr8.2:14297266-14297285 | None:intergenic | 40.0% |
| !!! | TCATTTTTGGGATTCTTGGC+CGG | - | chr8.2:14298844-14298863 | MS.gene62430:CDS | 40.0% |
| ACTATTCATGGCATGCATGG+TGG | - | chr8.2:14298809-14298828 | MS.gene62430:CDS | 45.0% | |
| ATGCCCTTGTCAATTGGATG+TGG | - | chr8.2:14297927-14297946 | MS.gene62430:intron | 45.0% | |
| ATTGTGCCAAAGATGGTAGC+AGG | - | chr8.2:14297502-14297521 | MS.gene62430:CDS | 45.0% | |
| CCAAATTGGCCACAAAGCAA+AGG | + | chr8.2:14298651-14298670 | None:intergenic | 45.0% | |
| CCTTTGCTTTGTGGCCAATT+TGG | - | chr8.2:14298648-14298667 | MS.gene62430:CDS | 45.0% | |
| CTAGGTTCACCTTTGCTTTG+TGG | - | chr8.2:14298639-14298658 | MS.gene62430:CDS | 45.0% | |
| CTCACCCTCTCCTTCATAAA+AGG | + | chr8.2:14297800-14297819 | None:intergenic | 45.0% | |
| GACTTGCGAGTTATCAACGT+TGG | - | chr8.2:14297650-14297669 | MS.gene62430:intron | 45.0% | |
| GCAGACTGCCTCTATATCTT+GGG | - | chr8.2:14298365-14298384 | MS.gene62430:intron | 45.0% | |
| GCCATGACGATCGTATTAGA+AGG | - | chr8.2:14297369-14297388 | MS.gene62430:intron | 45.0% | |
| GGCAGTCTGCAATAGAACTA+AGG | + | chr8.2:14298355-14298374 | None:intergenic | 45.0% | |
| TAATACGATCGTCATGGCAC+AGG | + | chr8.2:14297367-14297386 | None:intergenic | 45.0% | |
| TCCCTATCTTTGGCATCTCT+AGG | - | chr8.2:14298621-14298640 | MS.gene62430:intron | 45.0% | |
| TCGATATCGTCAAACAGGTG+CGG | + | chr8.2:14298232-14298251 | None:intergenic | 45.0% | |
| TGCAGACTGCCTCTATATCT+TGG | - | chr8.2:14298364-14298383 | MS.gene62430:intron | 45.0% | |
| TTGCGAGTTATCAACGTTGG+CGG | - | chr8.2:14297653-14297672 | MS.gene62430:intron | 45.0% | |
| ! | ATCAGGCCAGCCTTTTATGA+AGG | - | chr8.2:14297787-14297806 | MS.gene62430:intron | 45.0% |
| ! | CCAGCCTTTTATGAAGGAGA+GGG | - | chr8.2:14297793-14297812 | MS.gene62430:intron | 45.0% |
| ! | TCGATCCATGTCCTTTTAGG+AGG | + | chr8.2:14297263-14297282 | None:intergenic | 45.0% |
| ! | TGCTAGTAGTGGTGATGACT+TGG | - | chr8.2:14297193-14297212 | MS.gene62430:CDS | 45.0% |
| !! | CATGTCCTTTTAGGAGGACT+CGG | + | chr8.2:14297257-14297276 | None:intergenic | 45.0% |
| !! | GGAATTCATCATTCTGAGGC+CGG | + | chr8.2:14298866-14298885 | None:intergenic | 45.0% |
| AACTCGCAAGTCGCAATGCT+GGG | + | chr8.2:14297642-14297661 | None:intergenic | 50.0% | |
| AATGAGGCAGAGACATAGCC+AGG | - | chr8.2:14297166-14297185 | MS.gene62430:CDS | 50.0% | |
| AATGCTGGGAGCTTCACAGT+TGG | + | chr8.2:14297628-14297647 | None:intergenic | 50.0% | |
| AGCCAGGGTTATGCTAGTAG+TGG | - | chr8.2:14297182-14297201 | MS.gene62430:CDS | 50.0% | |
| ATAAGACCAGACCATGAGGC+AGG | - | chr8.2:14297962-14297981 | MS.gene62430:intron | 50.0% | |
| ATGAGGCAGAGACATAGCCA+GGG | - | chr8.2:14297167-14297186 | MS.gene62430:CDS | 50.0% | |
| ATTAAACCACCTGCCCCAAC+CGG | + | chr8.2:14297149-14297168 | None:intergenic | 50.0% | |
| ATTCCGAATCCAGTGGCGAA+TGG | + | chr8.2:14298514-14298533 | None:intergenic | 50.0% | |
| CACCACTACTAGCATAACCC+TGG | + | chr8.2:14297187-14297206 | None:intergenic | 50.0% | |
| CCCTCTCCTTCATAAAAGGC+TGG | + | chr8.2:14297796-14297815 | None:intergenic | 50.0% | |
| CGAGTCCTCCTAAAAGGACA+TGG | - | chr8.2:14297255-14297274 | MS.gene62430:intron | 50.0% | |
| GGTCATAAGACCAGACCATG+AGG | - | chr8.2:14297958-14297977 | MS.gene62430:intron | 50.0% | |
| TAACTCGCAAGTCGCAATGC+TGG | + | chr8.2:14297643-14297662 | None:intergenic | 50.0% | |
| TAAGACCAGACCATGAGGCA+GGG | - | chr8.2:14297963-14297982 | MS.gene62430:intron | 50.0% | |
| TGGAAGACGATGCATGTTCG+AGG | - | chr8.2:14297213-14297232 | MS.gene62430:intron | 50.0% | |
| TTGCCATTCGCCACTGGATT+CGG | - | chr8.2:14298508-14298527 | MS.gene62430:intron | 50.0% | |
| TTGGGGCAGGTGGTTTAATG+AGG | - | chr8.2:14297150-14297169 | MS.gene62430:CDS | 50.0% | |
| ! | GCCAGCCTTTTATGAAGGAG+AGG | - | chr8.2:14297792-14297811 | MS.gene62430:intron | 50.0% |
| ACAGTGTTGCCATTCGCCAC+TGG | - | chr8.2:14298502-14298521 | MS.gene62430:intron | 55.0% | |
| GGAGGTGATTCCGAATCCAG+TGG | + | chr8.2:14298521-14298540 | None:intergenic | 55.0% | |
| TGCCTCCGAGTCCTCCTAAA+AGG | - | chr8.2:14297249-14297268 | MS.gene62430:intron | 55.0% | |
| !! | GTCCTTTTAGGAGGACTCGG+AGG | + | chr8.2:14297254-14297273 | None:intergenic | 55.0% |
| !! | TCTTGGCTTGGAGCGTTCGA+AGG | - | chr8.2:14298434-14298453 | MS.gene62430:intron | 55.0% |
| ATGTCTGGGGGAACACCGGT+TGG | - | chr8.2:14297131-14297150 | MS.gene62430:CDS | 60.0% | |
| ! | TGTCTGGGGGAACACCGGTT+GGG | - | chr8.2:14297132-14297151 | MS.gene62430:CDS | 60.0% |
| ACGTGCCCTGCCTCATGGTC+TGG | + | chr8.2:14297971-14297990 | None:intergenic | 65.0% | |
| TGCACACGTGCCCTGCCTCA+TGG | + | chr8.2:14297976-14297995 | None:intergenic | 65.0% | |
| ! | GTCTGGGGGAACACCGGTTG+GGG | - | chr8.2:14297133-14297152 | MS.gene62430:CDS | 65.0% |
| ! | GGAACACCGGTTGGGGCAGG+TGG | - | chr8.2:14297140-14297159 | MS.gene62430:CDS | 70.0% |
| ! | GGGGGAACACCGGTTGGGGC+AGG | - | chr8.2:14297137-14297156 | MS.gene62430:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 14297131 | 14298896 | 14297131 | ID=MS.gene62430 |
| chr8.2 | mRNA | 14297131 | 14298896 | 14297131 | ID=MS.gene62430.t1;Parent=MS.gene62430 |
| chr8.2 | exon | 14298637 | 14298896 | 14298637 | ID=MS.gene62430.t1.exon1;Parent=MS.gene62430.t1 |
| chr8.2 | CDS | 14298637 | 14298896 | 14298637 | ID=cds.MS.gene62430.t1;Parent=MS.gene62430.t1 |
| chr8.2 | exon | 14297479 | 14297658 | 14297479 | ID=MS.gene62430.t1.exon2;Parent=MS.gene62430.t1 |
| chr8.2 | CDS | 14297479 | 14297658 | 14297479 | ID=cds.MS.gene62430.t1;Parent=MS.gene62430.t1 |
| chr8.2 | exon | 14297333 | 14297384 | 14297333 | ID=MS.gene62430.t1.exon3;Parent=MS.gene62430.t1 |
| chr8.2 | CDS | 14297333 | 14297384 | 14297333 | ID=cds.MS.gene62430.t1;Parent=MS.gene62430.t1 |
| chr8.2 | exon | 14297131 | 14297223 | 14297131 | ID=MS.gene62430.t1.exon4;Parent=MS.gene62430.t1 |
| chr8.2 | CDS | 14297131 | 14297223 | 14297131 | ID=cds.MS.gene62430.t1;Parent=MS.gene62430.t1 |
| Gene Sequence |
| Protein sequence |
