Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65129.t1 | XP_003622990.1 | 98.8 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 7.10E-121 | 443.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65129.t1 | Q9SAI5 | 47.8 | 245 | 126 | 2 | 4 | 246 | 3 | 247 | 3.1e-56 | 219.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65129.t1 | G7L2C7 | 98.8 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 5.1e-121 | 443.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene65129 | 0.821286 | 4.38E-53 | -1.69E-46 |
| MS.gene04920 | MS.gene65129 | 0.810724 | 1.00E-50 | -1.69E-46 |
| MS.gene053195 | MS.gene65129 | 0.81631 | 5.91E-52 | -1.69E-46 |
| MS.gene055694 | MS.gene65129 | 0.827645 | 1.40E-54 | -1.69E-46 |
| MS.gene056215 | MS.gene65129 | 0.818451 | 1.95E-52 | -1.69E-46 |
| MS.gene05689 | MS.gene65129 | 0.828662 | 7.94E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene65129 | 0.817685 | 2.90E-52 | -1.69E-46 |
| MS.gene057598 | MS.gene65129 | 0.807287 | 5.44E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene65129 | -0.835169 | 1.96E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene037074 | MS.gene65129 | PPI |
| MS.gene26979 | MS.gene65129 | PPI |
| MS.gene034156 | MS.gene65129 | PPI |
| MS.gene034157 | MS.gene65129 | PPI |
| MS.gene65129 | MS.gene24260 | PPI |
| MS.gene053148 | MS.gene65129 | PPI |
| MS.gene65129 | MS.gene054580 | PPI |
| MS.gene55098 | MS.gene65129 | PPI |
| MS.gene56166 | MS.gene65129 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65129.t1 | MTR_7g059170 | 98.780 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 0.0 | 496 |
| MS.gene65129.t1 | MTR_4g008160 | 47.234 | 235 | 123 | 1 | 13 | 246 | 9 | 243 | 8.74e-74 | 224 |
| MS.gene65129.t1 | MTR_1g022385 | 46.383 | 235 | 125 | 1 | 13 | 246 | 41 | 275 | 3.08e-72 | 222 |
| MS.gene65129.t1 | MTR_2g038250 | 45.344 | 247 | 131 | 2 | 1 | 246 | 1 | 244 | 1.34e-71 | 219 |
| MS.gene65129.t1 | MTR_3g029930 | 83.784 | 74 | 11 | 1 | 1 | 74 | 1 | 73 | 4.56e-34 | 117 |
| MS.gene65129.t1 | MTR_1g022375 | 48.684 | 76 | 39 | 0 | 161 | 236 | 81 | 156 | 7.79e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65129.t1 | AT1G80750 | 51.613 | 248 | 117 | 3 | 1 | 246 | 1 | 247 | 2.23e-79 | 239 |
| MS.gene65129.t1 | AT2G01250 | 48.101 | 237 | 118 | 2 | 13 | 246 | 8 | 242 | 1.61e-73 | 224 |
| MS.gene65129.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene65129.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene65129.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene65129.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene65129.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene65129.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene65129.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene65129.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene65129.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene65129.t1 | AT2G44120 | 47.257 | 237 | 120 | 2 | 13 | 246 | 13 | 247 | 2.43e-73 | 224 |
| MS.gene65129.t1 | AT2G44120 | 47.257 | 237 | 120 | 2 | 13 | 246 | 8 | 242 | 2.50e-73 | 223 |
| MS.gene65129.t1 | AT2G01250 | 43.605 | 172 | 92 | 2 | 13 | 181 | 8 | 177 | 2.44e-38 | 132 |
Find 57 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACTGAACAAGTGCTTTC+TGG | 0.154170 | 7.1:-42422916 | None:intergenic |
| CTGAATACGAATGACTATTA+TGG | 0.199323 | 7.1:-42422781 | None:intergenic |
| CTTGTAAATCAGCTCCTTTA+TGG | 0.209662 | 7.1:-42423939 | None:intergenic |
| TACAAGGATGGTGGAGATTC+AGG | 0.234481 | 7.1:+42424263 | MS.gene65129:CDS |
| CATAATAGTCATTCGTATTC+AGG | 0.240399 | 7.1:+42422782 | MS.gene65129:CDS |
| ACTATTATGGGCTTGTTCTT+TGG | 0.268791 | 7.1:-42422768 | None:intergenic |
| CAGAAAGCACTTGTTCAGTT+TGG | 0.281077 | 7.1:+42422917 | MS.gene65129:CDS |
| AAGCCAGCAGATGGATTAAA+AGG | 0.288400 | 7.1:+42424227 | MS.gene65129:CDS |
| CCCTTCGTTTCATTCTAATA+AGG | 0.310268 | 7.1:-42422716 | None:intergenic |
| TTGTAGGAATTGGGAAAGTT+TGG | 0.312133 | 7.1:+42424110 | MS.gene65129:intron |
| GGAATATAGTTGAGATCCTT+TGG | 0.341292 | 7.1:-42422390 | None:intergenic |
| AGAAAGCACTTGTTCAGTTT+GGG | 0.363335 | 7.1:+42422918 | MS.gene65129:CDS |
| TGCTGGCTTGTTCAGTTCAA+AGG | 0.380601 | 7.1:-42424213 | None:intergenic |
| TGAATACGAATGACTATTAT+GGG | 0.384437 | 7.1:-42422780 | None:intergenic |
| CTCTTCTTCAATATAACCTC+AGG | 0.413339 | 7.1:-42422411 | None:intergenic |
| TGCAAATCTTAAAACCATAA+AGG | 0.425498 | 7.1:+42423925 | MS.gene65129:CDS |
| GTTCAAAGGGCCACATAAAT+CGG | 0.432282 | 7.1:-42424199 | None:intergenic |
| AGCATGGGCCTTGAGTAAAA+AGG | 0.451851 | 7.1:+42422446 | MS.gene65129:CDS |
| GTTGAACCATATGTCACCTA+TGG | 0.470090 | 7.1:+42423008 | MS.gene65129:CDS |
| CAATGTTGGTCCACACTTCA+AGG | 0.470139 | 7.1:+42424169 | MS.gene65129:CDS |
| TTGGCCATTACTCCATCAGT+TGG | 0.471363 | 7.1:-42422975 | None:intergenic |
| GCTGGCTTGTTCAGTTCAAA+GGG | 0.484099 | 7.1:-42424212 | None:intergenic |
| ATAATAGTCATTCGTATTCA+GGG | 0.488242 | 7.1:+42422783 | MS.gene65129:CDS |
| GCTTACCCATAGGTGACATA+TGG | 0.491527 | 7.1:-42423014 | None:intergenic |
| ACGAAGGGTCAAGTGGAGAC+GGG | 0.493528 | 7.1:+42422731 | MS.gene65129:CDS |
| GTCTTTGTGAAGCCAACTGA+TGG | 0.503340 | 7.1:+42422963 | MS.gene65129:CDS |
| AGAGGAAACACAGCGAAGCA+TGG | 0.507603 | 7.1:+42422430 | MS.gene65129:CDS |
| TGATGGAGTAATGGCCAAGC+TGG | 0.512004 | 7.1:+42422980 | MS.gene65129:CDS |
| ACAAGGATGGTGGAGATTCA+GGG | 0.513757 | 7.1:+42424264 | MS.gene65129:CDS |
| AGACAATAATCTTATTGAGC+AGG | 0.517657 | 7.1:+42424003 | MS.gene65129:CDS |
| CTGAGGTTATATTGAAGAAG+AGG | 0.519905 | 7.1:+42422412 | MS.gene65129:CDS |
| AGGAAGTTGTCCGATTTATG+TGG | 0.520802 | 7.1:+42424189 | MS.gene65129:CDS |
| AAAGGAGCTGATTTACAAGA+AGG | 0.528892 | 7.1:+42423943 | MS.gene65129:CDS |
| ACTTGAAAAGATGGCTGAAG+AGG | 0.529766 | 7.1:+42422362 | None:intergenic |
| AACGAAGGGTCAAGTGGAGA+CGG | 0.529927 | 7.1:+42422730 | MS.gene65129:CDS |
| AATCTCCACCATCCTTGTAT+CGG | 0.534716 | 7.1:-42424259 | None:intergenic |
| AGTCCTTGGACTTCCTGAGC+TGG | 0.543154 | 7.1:-42422491 | None:intergenic |
| GAGGAAACACAGCGAAGCAT+GGG | 0.549509 | 7.1:+42422431 | MS.gene65129:CDS |
| ATAAGATTATTGTCTGTCAA+AGG | 0.552916 | 7.1:-42423995 | None:intergenic |
| GAACTGAACAAGCCAGCAGA+TGG | 0.558045 | 7.1:+42424218 | MS.gene65129:CDS |
| GTGCATCAAATTGACAATGT+TGG | 0.571611 | 7.1:+42424155 | MS.gene65129:CDS |
| CGAAGGGTCAAGTGGAGACG+GGG | 0.582255 | 7.1:+42422732 | MS.gene65129:CDS |
| TGGTTCAACTCTCGCCAGCT+TGG | 0.586026 | 7.1:-42422994 | None:intergenic |
| GGCTGAAGAGGAACAACCAA+AGG | 0.590481 | 7.1:+42422374 | MS.gene65129:CDS |
| TTGAACCATATGTCACCTAT+GGG | 0.596680 | 7.1:+42423009 | MS.gene65129:CDS |
| AAGGAGCTGATTTACAAGAA+GGG | 0.608163 | 7.1:+42423944 | MS.gene65129:CDS |
| GAATGAAACGAAGGGTCAAG+TGG | 0.608473 | 7.1:+42422724 | MS.gene65129:CDS |
| CGGACAACTTCCTTGAAGTG+TGG | 0.624573 | 7.1:-42424179 | None:intergenic |
| ACCTTATTAGAATGAAACGA+AGG | 0.629621 | 7.1:+42422715 | MS.gene65129:CDS |
| TTTCCAGCTCAGGAAGTCCA+AGG | 0.632786 | 7.1:+42422488 | MS.gene65129:CDS |
| CAAGGATGGTGGAGATTCAG+GGG | 0.643297 | 7.1:+42424265 | MS.gene65129:CDS |
| CCTTATTAGAATGAAACGAA+GGG | 0.647440 | 7.1:+42422716 | MS.gene65129:CDS |
| GAAGCCAACTGATGGAGTAA+TGG | 0.648805 | 7.1:+42422971 | MS.gene65129:CDS |
| TAATAGTCATTCGTATTCAG+GGG | 0.663363 | 7.1:+42422784 | MS.gene65129:CDS |
| GGATCTCAACTATATTCCTG+AGG | 0.677649 | 7.1:+42422395 | MS.gene65129:CDS |
| GCTCATTGATGAGATCCTCA+CGG | 0.701499 | 7.1:-42424289 | None:intergenic |
| TGGAGATTCAGGGGACCGTG+AGG | 0.708623 | 7.1:+42424274 | MS.gene65129:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAACAAAATAAAAGGA+GGG | - | chr7.1:42422583-42422602 | None:intergenic | 15.0% |
| !! | AGTGAATATAACAAAATAAA+AGG | - | chr7.1:42422587-42422606 | None:intergenic | 15.0% |
| !! | TTTATGTTATGATATGTAAT+TGG | + | chr7.1:42423097-42423116 | MS.gene65129:intron | 15.0% |
| !!! | TACTATCTATAAATACTTTT+TGG | + | chr7.1:42423516-42423535 | MS.gene65129:intron | 15.0% |
| !!! | TTTATGAAGTTTTTTTGAAA+AGG | - | chr7.1:42423473-42423492 | None:intergenic | 15.0% |
| !! | AAAACTTCATAAATTGTTTG+TGG | + | chr7.1:42423480-42423499 | MS.gene65129:intron | 20.0% |
| !! | ATATTCAAAAATGAAATCCT+CGG | - | chr7.1:42422529-42422548 | None:intergenic | 20.0% |
| !! | GAATATAACAAAATAAAAGG+AGG | - | chr7.1:42422584-42422603 | None:intergenic | 20.0% |
| !!! | AAACACTATTTTTAGGTTAA+AGG | + | chr7.1:42423319-42423338 | MS.gene65129:intron | 20.0% |
| !!! | AAACAGATTTTCACAAAATT+AGG | - | chr7.1:42423893-42423912 | None:intergenic | 20.0% |
| !!! | AACACTATTTTTAGGTTAAA+GGG | + | chr7.1:42423320-42423339 | MS.gene65129:intron | 20.0% |
| !!! | AACCAGTTTTTATAATAAAG+TGG | - | chr7.1:42423797-42423816 | None:intergenic | 20.0% |
| !!! | ATTTTATGAAGTTAACTTTC+TGG | - | chr7.1:42423447-42423466 | None:intergenic | 20.0% |
| !!! | TTGAACTTTCATATAGTTTT+AGG | + | chr7.1:42423133-42423152 | MS.gene65129:intron | 20.0% |
| !!! | TTTTTGGTTTAGAATATTCA+CGG | + | chr7.1:42423532-42423551 | MS.gene65129:intron | 20.0% |
| ! | ATAAGATTATTGTCTGTCAA+AGG | - | chr7.1:42423998-42424017 | None:intergenic | 25.0% |
| ! | ATAATAGTCATTCGTATTCA+GGG | + | chr7.1:42422783-42422802 | MS.gene65129:CDS | 25.0% |
| ! | CACCACTTTATTATAAAAAC+TGG | + | chr7.1:42423792-42423811 | MS.gene65129:intron | 25.0% |
| ! | CTCTATTATTAGTACACATA+AGG | - | chr7.1:42423706-42423725 | None:intergenic | 25.0% |
| ! | GACAAAAAATCAAAACATCA+AGG | - | chr7.1:42422828-42422847 | None:intergenic | 25.0% |
| ! | GTTATGATATGTAATTGGAA+GGG | + | chr7.1:42423102-42423121 | MS.gene65129:intron | 25.0% |
| ! | TATTCAAAAATGAAATCCTC+GGG | - | chr7.1:42422528-42422547 | None:intergenic | 25.0% |
| ! | TGAATACGAATGACTATTAT+GGG | - | chr7.1:42422783-42422802 | None:intergenic | 25.0% |
| ! | TGCAAATCTTAAAACCATAA+AGG | + | chr7.1:42423925-42423944 | MS.gene65129:CDS | 25.0% |
| ! | TGTTATGATATGTAATTGGA+AGG | + | chr7.1:42423101-42423120 | MS.gene65129:intron | 25.0% |
| !!! | CTTTTGCTCTATTTGTTTTT+AGG | + | chr7.1:42422871-42422890 | MS.gene65129:intron | 25.0% |
| !!! | GATTGACAAACACTATTTTT+AGG | + | chr7.1:42423312-42423331 | MS.gene65129:intron | 25.0% |
| AAAATAGTGTTTGTCAATCG+AGG | - | chr7.1:42423311-42423330 | None:intergenic | 30.0% | |
| AATTCCTACAAGTCAAAAAG+TGG | - | chr7.1:42424101-42424120 | None:intergenic | 30.0% | |
| ACAAAAACAATTCAGTGAGT+GGG | - | chr7.1:42424071-42424090 | None:intergenic | 30.0% | |
| ACACTATTTAGTACAGATAG+AGG | + | chr7.1:42423240-42423259 | MS.gene65129:intron | 30.0% | |
| ACCTTATTAGAATGAAACGA+AGG | + | chr7.1:42422715-42422734 | MS.gene65129:CDS | 30.0% | |
| AGACAATAATCTTATTGAGC+AGG | + | chr7.1:42424003-42424022 | MS.gene65129:CDS | 30.0% | |
| ATTGGAAGAACTTTAGTTAC+AGG | - | chr7.1:42423393-42423412 | None:intergenic | 30.0% | |
| CATAATAGTCATTCGTATTC+AGG | + | chr7.1:42422782-42422801 | MS.gene65129:CDS | 30.0% | |
| CCTTATTAGAATGAAACGAA+GGG | + | chr7.1:42422716-42422735 | MS.gene65129:CDS | 30.0% | |
| CTCTACTATTAGTACACATA+AGG | - | chr7.1:42423638-42423657 | None:intergenic | 30.0% | |
| CTGAATACGAATGACTATTA+TGG | - | chr7.1:42422784-42422803 | None:intergenic | 30.0% | |
| TAATAGTCATTCGTATTCAG+GGG | + | chr7.1:42422784-42422803 | MS.gene65129:CDS | 30.0% | |
| TACAAAAACAATTCAGTGAG+TGG | - | chr7.1:42424072-42424091 | None:intergenic | 30.0% | |
| TAGAATATTCACGGAAGATT+GGG | + | chr7.1:42423541-42423560 | MS.gene65129:intron | 30.0% | |
| TATGTAAAGTAGTGCACATA+TGG | + | chr7.1:42423762-42423781 | MS.gene65129:intron | 30.0% | |
| TGTCAATCGAGGAATATATT+GGG | - | chr7.1:42423300-42423319 | None:intergenic | 30.0% | |
| TTAGAATATTCACGGAAGAT+TGG | + | chr7.1:42423540-42423559 | MS.gene65129:intron | 30.0% | |
| TTGTCAATCGAGGAATATAT+TGG | - | chr7.1:42423301-42423320 | None:intergenic | 30.0% | |
| ! | CATTTTTGAATATCGCAACA+GGG | + | chr7.1:42422536-42422555 | MS.gene65129:CDS | 30.0% |
| !! | TCATTTTTGAATATCGCAAC+AGG | + | chr7.1:42422535-42422554 | MS.gene65129:CDS | 30.0% |
| !!! | ACTTTTTGACTTGTAGGAAT+TGG | + | chr7.1:42424100-42424119 | MS.gene65129:intron | 30.0% |
| !!! | CTTTTTGACTTGTAGGAATT+GGG | + | chr7.1:42424101-42424120 | MS.gene65129:intron | 30.0% |
| AGAAAAAAAGTTTCCAGCTC+AGG | + | chr7.1:42422478-42422497 | MS.gene65129:CDS | 35.0% | |
| AGGATTGAAAAACCGATACA+AGG | + | chr7.1:42424247-42424266 | MS.gene65129:CDS | 35.0% | |
| ATCCTCAGCAAACTGAAATT+TGG | - | chr7.1:42423866-42423885 | None:intergenic | 35.0% | |
| CAAAGGAAAACTAGGAATCT+AGG | - | chr7.1:42424047-42424066 | None:intergenic | 35.0% | |
| CCCTTCGTTTCATTCTAATA+AGG | - | chr7.1:42422719-42422738 | None:intergenic | 35.0% | |
| CTCTTCTTCAATATAACCTC+AGG | - | chr7.1:42422414-42422433 | None:intergenic | 35.0% | |
| CTGAGGTTATATTGAAGAAG+AGG | + | chr7.1:42422412-42422431 | MS.gene65129:CDS | 35.0% | |
| CTTGTAAATCAGCTCCTTTA+TGG | - | chr7.1:42423942-42423961 | None:intergenic | 35.0% | |
| GGAATATAGTTGAGATCCTT+TGG | - | chr7.1:42422393-42422412 | None:intergenic | 35.0% | |
| GTGCATCAAATTGACAATGT+TGG | + | chr7.1:42424155-42424174 | MS.gene65129:CDS | 35.0% | |
| TCCTCAGCAAACTGAAATTT+GGG | - | chr7.1:42423865-42423884 | None:intergenic | 35.0% | |
| TTAACTTTCTGGACAGAAGA+AGG | - | chr7.1:42423436-42423455 | None:intergenic | 35.0% | |
| TTGAAAAACCGATACAAGGA+TGG | + | chr7.1:42424251-42424270 | MS.gene65129:CDS | 35.0% | |
| TTGAACCATATGTCACCTAT+GGG | + | chr7.1:42423009-42423028 | MS.gene65129:CDS | 35.0% | |
| TTGAGCAGGTAATACATACA+TGG | + | chr7.1:42424017-42424036 | MS.gene65129:intron | 35.0% | |
| TTGTAGGAATTGGGAAAGTT+TGG | + | chr7.1:42424110-42424129 | MS.gene65129:intron | 35.0% | |
| ! | AAAGGAGCTGATTTACAAGA+AGG | + | chr7.1:42423943-42423962 | MS.gene65129:CDS | 35.0% |
| ! | AAGGAGCTGATTTACAAGAA+GGG | + | chr7.1:42423944-42423963 | MS.gene65129:CDS | 35.0% |
| ! | AATCCTTTTAATCCATCTGC+TGG | - | chr7.1:42424233-42424252 | None:intergenic | 35.0% |
| ! | ACTATTATGGGCTTGTTCTT+TGG | - | chr7.1:42422771-42422790 | None:intergenic | 35.0% |
| !! | AGAAAGCACTTGTTCAGTTT+GGG | + | chr7.1:42422918-42422937 | MS.gene65129:CDS | 35.0% |
| !!! | TGAGCTGGAAACTTTTTTTC+TGG | - | chr7.1:42422479-42422498 | None:intergenic | 35.0% |
| !!! | TGTTCCACTTTTTGACTTGT+AGG | + | chr7.1:42424094-42424113 | MS.gene65129:intron | 35.0% |
| AAAAACCGATACAAGGATGG+TGG | + | chr7.1:42424254-42424273 | MS.gene65129:CDS | 40.0% | |
| AATCTCCACCATCCTTGTAT+CGG | - | chr7.1:42424262-42424281 | None:intergenic | 40.0% | |
| ACTATTGTGCTATAGCGTAG+AGG | + | chr7.1:42423187-42423206 | MS.gene65129:intron | 40.0% | |
| AGGAAGTTGTCCGATTTATG+TGG | + | chr7.1:42424189-42424208 | MS.gene65129:CDS | 40.0% | |
| ATGACTTCTATCACTTGTGC+AGG | + | chr7.1:42422686-42422705 | MS.gene65129:intron | 40.0% | |
| ATTGGGTTACTTGGAGATCA+AGG | + | chr7.1:42423558-42423577 | MS.gene65129:intron | 40.0% | |
| CAAACTGAACAAGTGCTTTC+TGG | - | chr7.1:42422919-42422938 | None:intergenic | 40.0% | |
| CACAGGAAAGTAAAGATGCA+AGG | - | chr7.1:42423829-42423848 | None:intergenic | 40.0% | |
| CAGATGCTTGCAACTATGTT+AGG | + | chr7.1:42423596-42423615 | MS.gene65129:intron | 40.0% | |
| CCTCAGCAAACTGAAATTTG+GGG | - | chr7.1:42423864-42423883 | None:intergenic | 40.0% | |
| GCTTGCAACTATGTTAGGAA+AGG | + | chr7.1:42423601-42423620 | MS.gene65129:intron | 40.0% | |
| GGATCTCAACTATATTCCTG+AGG | + | chr7.1:42422395-42422414 | MS.gene65129:CDS | 40.0% | |
| GTTCAAAGGGCCACATAAAT+CGG | - | chr7.1:42424202-42424221 | None:intergenic | 40.0% | |
| GTTGAACCATATGTCACCTA+TGG | + | chr7.1:42423008-42423027 | MS.gene65129:CDS | 40.0% | |
| TCAATCTATCGCTTACCCAT+AGG | - | chr7.1:42423027-42423046 | None:intergenic | 40.0% | |
| TGGGGATAATGCATATACAC+AGG | - | chr7.1:42423846-42423865 | None:intergenic | 40.0% | |
| !! | AAGCCAGCAGATGGATTAAA+AGG | + | chr7.1:42424227-42424246 | MS.gene65129:CDS | 40.0% |
| !! | CAGAAAGCACTTGTTCAGTT+TGG | + | chr7.1:42422917-42422936 | MS.gene65129:CDS | 40.0% |
| !!! | GGGCTTTTTTATGAAGTCCT+TGG | - | chr7.1:42422508-42422527 | None:intergenic | 40.0% |
| AGCATGGGCCTTGAGTAAAA+AGG | + | chr7.1:42422446-42422465 | MS.gene65129:CDS | 45.0% | |
| CAATGTTGGTCCACACTTCA+AGG | + | chr7.1:42424169-42424188 | MS.gene65129:CDS | 45.0% | |
| CAATTCAGTGAGTGGGTCAA+AGG | - | chr7.1:42424064-42424083 | None:intergenic | 45.0% | |
| GAAGCCAACTGATGGAGTAA+TGG | + | chr7.1:42422971-42422990 | MS.gene65129:CDS | 45.0% | |
| GAATGAAACGAAGGGTCAAG+TGG | + | chr7.1:42422724-42422743 | MS.gene65129:CDS | 45.0% | |
| GAGTGGGTCAAAGGAAAACT+AGG | - | chr7.1:42424055-42424074 | None:intergenic | 45.0% | |
| GCATCATGTGTGACATGCAT+AGG | - | chr7.1:42423665-42423684 | None:intergenic | 45.0% | |
| GCTCATTGATGAGATCCTCA+CGG | - | chr7.1:42424292-42424311 | None:intergenic | 45.0% | |
| GCTTACCCATAGGTGACATA+TGG | - | chr7.1:42423017-42423036 | None:intergenic | 45.0% | |
| GGACAGAAGAAGGATATGAG+AGG | - | chr7.1:42423426-42423445 | None:intergenic | 45.0% | |
| GGACTTCATAAAAAAGCCCG+AGG | + | chr7.1:42422509-42422528 | MS.gene65129:CDS | 45.0% | |
| GTCTTTGTGAAGCCAACTGA+TGG | + | chr7.1:42422963-42422982 | MS.gene65129:CDS | 45.0% | |
| TCACGGAAGATTGGGTTACT+TGG | + | chr7.1:42423549-42423568 | MS.gene65129:intron | 45.0% | |
| TTCAAATTCCGCTACCCACA+CGG | - | chr7.1:42423274-42423293 | None:intergenic | 45.0% | |
| TTGGCCATTACTCCATCAGT+TGG | - | chr7.1:42422978-42422997 | None:intergenic | 45.0% | |
| ! | ATGAGAGGCAGCTAGTCTAT+TGG | - | chr7.1:42423411-42423430 | None:intergenic | 45.0% |
| ! | GAGTTGCGCCTTTTTACTCA+AGG | - | chr7.1:42422457-42422476 | None:intergenic | 45.0% |
| !! | ACAAGGATGGTGGAGATTCA+GGG | + | chr7.1:42424264-42424283 | MS.gene65129:CDS | 45.0% |
| !! | ATAGAGGCACTATATCCGTG+TGG | + | chr7.1:42423256-42423275 | MS.gene65129:intron | 45.0% |
| !! | CCCCAAATTTCAGTTTGCTG+AGG | + | chr7.1:42423861-42423880 | MS.gene65129:intron | 45.0% |
| !! | GCTGGCTTGTTCAGTTCAAA+GGG | - | chr7.1:42424215-42424234 | None:intergenic | 45.0% |
| !! | TACAAGGATGGTGGAGATTC+AGG | + | chr7.1:42424263-42424282 | MS.gene65129:CDS | 45.0% |
| !! | TAGAGGCACTATATCCGTGT+GGG | + | chr7.1:42423257-42423276 | MS.gene65129:intron | 45.0% |
| !! | TGCTGGCTTGTTCAGTTCAA+AGG | - | chr7.1:42424216-42424235 | None:intergenic | 45.0% |
| AACGAAGGGTCAAGTGGAGA+CGG | + | chr7.1:42422730-42422749 | MS.gene65129:CDS | 50.0% | |
| AGAGGAAACACAGCGAAGCA+TGG | + | chr7.1:42422430-42422449 | MS.gene65129:CDS | 50.0% | |
| CACTATATCCGTGTGGGTAG+CGG | + | chr7.1:42423263-42423282 | MS.gene65129:intron | 50.0% | |
| CGGACAACTTCCTTGAAGTG+TGG | - | chr7.1:42424182-42424201 | None:intergenic | 50.0% | |
| GAACTGAACAAGCCAGCAGA+TGG | + | chr7.1:42424218-42424237 | MS.gene65129:CDS | 50.0% | |
| GAGGAAACACAGCGAAGCAT+GGG | + | chr7.1:42422431-42422450 | MS.gene65129:CDS | 50.0% | |
| GGCTGAAGAGGAACAACCAA+AGG | + | chr7.1:42422374-42422393 | MS.gene65129:CDS | 50.0% | |
| TGATGGAGTAATGGCCAAGC+TGG | + | chr7.1:42422980-42422999 | MS.gene65129:CDS | 50.0% | |
| TTTCCAGCTCAGGAAGTCCA+AGG | + | chr7.1:42422488-42422507 | MS.gene65129:CDS | 50.0% | |
| !! | CAAGGATGGTGGAGATTCAG+GGG | + | chr7.1:42424265-42424284 | MS.gene65129:CDS | 50.0% |
| ACGAAGGGTCAAGTGGAGAC+GGG | + | chr7.1:42422731-42422750 | MS.gene65129:CDS | 55.0% | |
| AGTCCTTGGACTTCCTGAGC+TGG | - | chr7.1:42422494-42422513 | None:intergenic | 55.0% | |
| TGGTTCAACTCTCGCCAGCT+TGG | - | chr7.1:42422997-42423016 | None:intergenic | 55.0% | |
| CGAAGGGTCAAGTGGAGACG+GGG | + | chr7.1:42422732-42422751 | MS.gene65129:CDS | 60.0% | |
| TGGAGATTCAGGGGACCGTG+AGG | + | chr7.1:42424274-42424293 | MS.gene65129:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 42422372 | 42424331 | 42422372 | ID=MS.gene65129 |
| chr7.1 | mRNA | 42422372 | 42424331 | 42422372 | ID=MS.gene65129.t1;Parent=MS.gene65129 |
| chr7.1 | exon | 42422372 | 42422557 | 42422372 | ID=MS.gene65129.t1.exon1;Parent=MS.gene65129.t1 |
| chr7.1 | CDS | 42422372 | 42422557 | 42422372 | ID=cds.MS.gene65129.t1;Parent=MS.gene65129.t1 |
| chr7.1 | exon | 42422708 | 42422805 | 42422708 | ID=MS.gene65129.t1.exon2;Parent=MS.gene65129.t1 |
| chr7.1 | CDS | 42422708 | 42422805 | 42422708 | ID=cds.MS.gene65129.t1;Parent=MS.gene65129.t1 |
| chr7.1 | exon | 42422893 | 42423030 | 42422893 | ID=MS.gene65129.t1.exon3;Parent=MS.gene65129.t1 |
| chr7.1 | CDS | 42422893 | 42423030 | 42422893 | ID=cds.MS.gene65129.t1;Parent=MS.gene65129.t1 |
| chr7.1 | exon | 42423922 | 42424024 | 42423922 | ID=MS.gene65129.t1.exon4;Parent=MS.gene65129.t1 |
| chr7.1 | CDS | 42423922 | 42424024 | 42423922 | ID=cds.MS.gene65129.t1;Parent=MS.gene65129.t1 |
| chr7.1 | exon | 42424116 | 42424331 | 42424116 | ID=MS.gene65129.t1.exon5;Parent=MS.gene65129.t1 |
| chr7.1 | CDS | 42424116 | 42424331 | 42424116 | ID=cds.MS.gene65129.t1;Parent=MS.gene65129.t1 |
| Gene Sequence |
| Protein sequence |
