Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66828.t1 | XP_003603860.1 | 98.9 | 178 | 2 | 0 | 1 | 178 | 1 | 178 | 2.10E-98 | 368.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66828.t1 | Q9SM57 | 82.0 | 178 | 31 | 1 | 1 | 178 | 1 | 177 | 1.5e-81 | 303.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66828.t1 | G7J5Z3 | 98.9 | 178 | 2 | 0 | 1 | 178 | 1 | 178 | 1.5e-98 | 368.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene66828 | 0.818658 | 1.75E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene66828 | 0.819454 | 1.15E-52 | -1.69E-46 |
| MS.gene050099 | MS.gene66828 | 0.901099 | 3.77E-78 | -1.69E-46 |
| MS.gene050301 | MS.gene66828 | 0.847756 | 9.46E-60 | -1.69E-46 |
| MS.gene050397 | MS.gene66828 | 0.808606 | 2.85E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene66828 | 0.847863 | 8.83E-60 | -1.69E-46 |
| MS.gene051471 | MS.gene66828 | 0.822711 | 2.05E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene66828 | 0.803609 | 3.21E-49 | -1.69E-46 |
| MS.gene051663 | MS.gene66828 | 0.819966 | 8.80E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene66828 | 0.837026 | 6.63E-57 | -1.69E-46 |
| MS.gene052178 | MS.gene66828 | 0.821622 | 3.66E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene66828 | 0.823067 | 1.69E-53 | -1.69E-46 |
| MS.gene052326 | MS.gene66828 | 0.807966 | 3.90E-50 | -1.69E-46 |
| MS.gene052789 | MS.gene66828 | 0.843253 | 1.57E-58 | -1.69E-46 |
| MS.gene053557 | MS.gene66828 | 0.802551 | 5.32E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene66828 | 0.83056 | 2.74E-55 | -1.69E-46 |
| MS.gene05455 | MS.gene66828 | 0.85656 | 2.96E-62 | -1.69E-46 |
| MS.gene055277 | MS.gene66828 | 0.839945 | 1.17E-57 | -1.69E-46 |
| MS.gene055390 | MS.gene66828 | 0.823624 | 1.25E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene66828 | 0.845788 | 3.26E-59 | -1.69E-46 |
| MS.gene055428 | MS.gene66828 | 0.837581 | 4.78E-57 | -1.69E-46 |
| MS.gene05702 | MS.gene66828 | 0.810987 | 8.77E-51 | -1.69E-46 |
| MS.gene057121 | MS.gene66828 | 0.82575 | 3.95E-54 | -1.69E-46 |
| MS.gene057439 | MS.gene66828 | 0.816049 | 6.76E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene66828 | 0.83095 | 2.20E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene66828 | 0.872216 | 3.77E-67 | -1.69E-46 |
| MS.gene058660 | MS.gene66828 | 0.815646 | 8.31E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene66828 | 0.850878 | 1.28E-60 | -1.69E-46 |
| MS.gene059326 | MS.gene66828 | 0.861597 | 9.17E-64 | -1.69E-46 |
| MS.gene059518 | MS.gene66828 | 0.87218 | 3.88E-67 | -1.69E-46 |
| MS.gene05984 | MS.gene66828 | 0.825631 | 4.22E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene66828 | 0.802787 | 4.75E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene66828 | 0.816275 | 6.02E-52 | -1.69E-46 |
| MS.gene060476 | MS.gene66828 | 0.820805 | 5.65E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene66828 | 0.814082 | 1.85E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66828.t1 | MTR_3g115990 | 98.876 | 178 | 2 | 0 | 1 | 178 | 1 | 178 | 2.20e-130 | 363 |
| MS.gene66828.t1 | MTR_3g115990 | 86.275 | 204 | 2 | 1 | 1 | 178 | 1 | 204 | 1.24e-124 | 349 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66828.t1 | AT1G76405 | 51.685 | 178 | 75 | 1 | 1 | 178 | 1 | 167 | 4.98e-68 | 204 |
| MS.gene66828.t1 | AT1G20816 | 55.056 | 178 | 69 | 1 | 1 | 178 | 1 | 167 | 1.60e-67 | 203 |
| MS.gene66828.t1 | AT1G76405 | 50.000 | 56 | 28 | 0 | 1 | 56 | 1 | 56 | 4.28e-17 | 72.0 |
Find 29 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTTAACTTCAAAATTA+AGG | 0.130885 | 3.4:+98984020 | MS.gene66828:CDS |
| ACGAGGGCACGCAAAGAATT+AGG | 0.268380 | 3.4:-98983743 | None:intergenic |
| CTTGTTAACTTCAAAATTAA+GGG | 0.310936 | 3.4:+98984021 | MS.gene66828:CDS |
| AGGTTCCTTATGTGCAGATT+AGG | 0.316574 | 3.4:+98985574 | MS.gene66828:intron |
| TGCAGATTAGGGAGAATAAT+TGG | 0.319583 | 3.4:+98985586 | MS.gene66828:CDS |
| ATAGTACCTCCTTAAAATCT+TGG | 0.365451 | 3.4:-98984059 | None:intergenic |
| GGTTCCTTATGTGCAGATTA+GGG | 0.369973 | 3.4:+98985575 | MS.gene66828:intron |
| CGACACCAATACCTTCTTCC+AGG | 0.391747 | 3.4:+98983614 | MS.gene66828:CDS |
| ATGGAGACATCTCTGCGATA+TGG | 0.406246 | 3.4:+98983543 | MS.gene66828:CDS |
| GAAGTTAACAAGACCATCTT+CGG | 0.418600 | 3.4:-98984010 | None:intergenic |
| TGGCTATGAAGCTATTGAAC+AGG | 0.420836 | 3.4:+98984243 | MS.gene66828:CDS |
| ATGCAGACTACAAAGGTAGA+TGG | 0.424259 | 3.4:+98985616 | MS.gene66828:CDS |
| TTCTCCCTAATCTGCACATA+AGG | 0.440186 | 3.4:-98985579 | None:intergenic |
| TGAAAACTCAGCTCCTCCTC+TGG | 0.449354 | 3.4:-98984173 | None:intergenic |
| CAAGATGTTAGACTCAGAAT+TGG | 0.460040 | 3.4:+98984223 | MS.gene66828:CDS |
| TATGATAAACTTAACAATGT+TGG | 0.478350 | 3.4:+98983919 | MS.gene66828:CDS |
| CAATTCTGAGTCTAACATCT+TGG | 0.479633 | 3.4:-98984222 | None:intergenic |
| AAAATCTTGGTCAACATCAC+AGG | 0.522085 | 3.4:-98984046 | None:intergenic |
| AAATGTGATTACCTGGAAGA+AGG | 0.550658 | 3.4:-98983625 | None:intergenic |
| TTGTAGTTATCAGCCACGCT+TGG | 0.552067 | 3.4:+98983883 | MS.gene66828:intron |
| TTATCAGCCACGCTTGGTGT+AGG | 0.569861 | 3.4:+98983889 | MS.gene66828:CDS |
| TGTTATCCCAACAAGGTTCG+CGG | 0.581115 | 3.4:+98983695 | MS.gene66828:intron |
| GATTACCTGGAAGAAGGTAT+TGG | 0.592385 | 3.4:-98983619 | None:intergenic |
| GAGACATCTCTGCGATATGG+AGG | 0.610703 | 3.4:+98983546 | MS.gene66828:CDS |
| TTGTAGAGGAAATCCAGAGG+AGG | 0.623791 | 3.4:+98984160 | MS.gene66828:intron |
| CTGGATAGAAATGTCGAACG+AGG | 0.632953 | 3.4:-98983760 | None:intergenic |
| ACATTTAATGCAGACTACAA+AGG | 0.641965 | 3.4:+98985609 | MS.gene66828:CDS |
| TTGCACTCCTACACCAAGCG+TGG | 0.667569 | 3.4:-98983896 | None:intergenic |
| TGGATAGAAATGTCGAACGA+GGG | 0.694230 | 3.4:-98983759 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | - | chr3.4:98984310-98984329 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTTTTTGTAG+AGG | + | chr3.4:98984146-98984165 | MS.gene66828:intron | 10.0% |
| !! | AAAATAGTCAATAAAATGAT+TGG | - | chr3.4:98985426-98985445 | None:intergenic | 15.0% |
| !! | TAATTGATTAATACTTGTTT+GGG | + | chr3.4:98983843-98983862 | MS.gene66828:intron | 15.0% |
| !! | TTAAGTTCTTAAAAATACAA+TGG | - | chr3.4:98984577-98984596 | None:intergenic | 15.0% |
| !! | TTAATTGATTAATACTTGTT+TGG | + | chr3.4:98983842-98983861 | MS.gene66828:intron | 15.0% |
| !!! | TATTTATATTTCTGTAAAGT+AGG | + | chr3.4:98984666-98984685 | MS.gene66828:intron | 15.0% |
| !! | AAAGATAAAATGCATTACTA+AGG | - | chr3.4:98985511-98985530 | None:intergenic | 20.0% |
| !! | ACCATTAAAAATCAATTCTT+AGG | - | chr3.4:98984704-98984723 | None:intergenic | 20.0% |
| !! | ATTAAATTTCACAAAATGAG+TGG | - | chr3.4:98984100-98984119 | None:intergenic | 20.0% |
| !! | ATTGGATTATATAGATATCA+AGG | + | chr3.4:98984531-98984550 | MS.gene66828:intron | 20.0% |
| !! | CTTGTTAACTTCAAAATTAA+GGG | + | chr3.4:98984021-98984040 | MS.gene66828:CDS | 20.0% |
| !! | GAATTATACATAGAAAAGAT+TGG | - | chr3.4:98983653-98983672 | None:intergenic | 20.0% |
| !! | TATGATAAACTTAACAATGT+TGG | + | chr3.4:98983919-98983938 | MS.gene66828:CDS | 20.0% |
| !! | TCTTGTTAACTTCAAAATTA+AGG | + | chr3.4:98984020-98984039 | MS.gene66828:CDS | 20.0% |
| !! | TTCTATCATAAACCATATAT+AGG | + | chr3.4:98985033-98985052 | MS.gene66828:intron | 20.0% |
| !! | TTGGATTATATAGATATCAA+GGG | + | chr3.4:98984532-98984551 | MS.gene66828:intron | 20.0% |
| !!! | AAAAAAAGGTTTCTCAATTT+TGG | - | chr3.4:98984297-98984316 | None:intergenic | 20.0% |
| !!! | AAAAAAGGTTTCTCAATTTT+GGG | - | chr3.4:98984296-98984315 | None:intergenic | 20.0% |
| !!! | ACCTAAGAATTGATTTTTAA+TGG | + | chr3.4:98984700-98984719 | MS.gene66828:intron | 20.0% |
| !!! | ATAAGTATTGTATTTAATGG+AGG | + | chr3.4:98985178-98985197 | MS.gene66828:intron | 20.0% |
| !!! | GATTTTTAATGGTTAAGAAT+CGG | + | chr3.4:98984711-98984730 | MS.gene66828:intron | 20.0% |
| !!! | GGTTTTTAAAAGTTTAGAAT+TGG | - | chr3.4:98984799-98984818 | None:intergenic | 20.0% |
| ! | AACTGCTGTTAAAAAGAATT+TGG | + | chr3.4:98985322-98985341 | MS.gene66828:intron | 25.0% |
| ! | ATTGAAGGGATCAAATATAT+AGG | + | chr3.4:98984941-98984960 | MS.gene66828:intron | 25.0% |
| ! | GCTTTAGTCAAAGATTATAT+CGG | + | chr3.4:98984364-98984383 | MS.gene66828:intron | 25.0% |
| ! | TAAAAATACAATGGCATTGT+AGG | - | chr3.4:98984568-98984587 | None:intergenic | 25.0% |
| ! | TATATAGGAAAAAAAACCAC+TGG | + | chr3.4:98985048-98985067 | MS.gene66828:intron | 25.0% |
| ! | TATTACTAGATACATACATC+TGG | - | chr3.4:98983782-98983801 | None:intergenic | 25.0% |
| ! | TTTAACAGCAGTTAAATGTA+AGG | - | chr3.4:98985315-98985334 | None:intergenic | 25.0% |
| !! | AAAAAGGTTTCTCAATTTTG+GGG | - | chr3.4:98984295-98984314 | None:intergenic | 25.0% |
| !! | ATATTATTCTCATTTTCCAG+TGG | - | chr3.4:98985067-98985086 | None:intergenic | 25.0% |
| !! | CGCATAAGTATTGTATTTAA+TGG | + | chr3.4:98985175-98985194 | MS.gene66828:intron | 25.0% |
| !! | GAACATATTCAATTTTCAGA+AGG | + | chr3.4:98984198-98984217 | MS.gene66828:CDS | 25.0% |
| !! | GAACTAATTGCTATTATTCT+GGG | + | chr3.4:98984422-98984441 | MS.gene66828:intron | 25.0% |
| !! | TGAACTAATTGCTATTATTC+TGG | + | chr3.4:98984421-98984440 | MS.gene66828:intron | 25.0% |
| !!! | AAAACTTTAAGACCTTCAAA+TGG | + | chr3.4:98984626-98984645 | MS.gene66828:intron | 25.0% |
| !!! | AAACTTTTAAAAACCGTCAT+TGG | + | chr3.4:98984804-98984823 | MS.gene66828:intron | 25.0% |
| !!! | AGTATTTTGAGATTGAAAAC+TGG | + | chr3.4:98985203-98985222 | MS.gene66828:intron | 25.0% |
| !!! | GTGGTTTTTTTTCCTATATA+TGG | - | chr3.4:98985048-98985067 | None:intergenic | 25.0% |
| !!! | GTTTTAAGACAATGAAATCT+TGG | - | chr3.4:98985542-98985561 | None:intergenic | 25.0% |
| !!! | TACAAAGTTTTGTTAACTAG+CGG | + | chr3.4:98984464-98984483 | MS.gene66828:intron | 25.0% |
| AAGAATAACTCGGCAAAATT+AGG | - | chr3.4:98985474-98985493 | None:intergenic | 30.0% | |
| ACACCATGAAAAGAATAACT+CGG | - | chr3.4:98985484-98985503 | None:intergenic | 30.0% | |
| ACATTTAATGCAGACTACAA+AGG | + | chr3.4:98985609-98985628 | MS.gene66828:CDS | 30.0% | |
| AGAATAACTCGGCAAAATTA+GGG | - | chr3.4:98985473-98985492 | None:intergenic | 30.0% | |
| ATAGTACCTCCTTAAAATCT+TGG | - | chr3.4:98984062-98984081 | None:intergenic | 30.0% | |
| ATAGTACGCAGATAAATTGA+AGG | + | chr3.4:98984926-98984945 | MS.gene66828:intron | 30.0% | |
| ATCAATTCTTAGGTAACATG+TGG | - | chr3.4:98984694-98984713 | None:intergenic | 30.0% | |
| ATTGGAAAAATGTGATTACC+TGG | - | chr3.4:98983635-98983654 | None:intergenic | 30.0% | |
| ATTTCACAAAATGAGTGGAT+TGG | - | chr3.4:98984095-98984114 | None:intergenic | 30.0% | |
| CAGATTACTAAATGTTGCAA+GGG | + | chr3.4:98985122-98985141 | MS.gene66828:intron | 30.0% | |
| TAGTACGCAGATAAATTGAA+GGG | + | chr3.4:98984927-98984946 | MS.gene66828:intron | 30.0% | |
| TGATTAATACTTGTTTGGGT+TGG | + | chr3.4:98983847-98983866 | MS.gene66828:intron | 30.0% | |
| TTATCTGCGTACTATTAACA+AGG | - | chr3.4:98984921-98984940 | None:intergenic | 30.0% | |
| ! | AATCGGTTCTTATACAAGAA+TGG | + | chr3.4:98984728-98984747 | MS.gene66828:intron | 30.0% |
| ! | GATTAATACTTGTTTGGGTT+GGG | + | chr3.4:98983848-98983867 | MS.gene66828:intron | 30.0% |
| ! | TATTATTCTGGGAATTCGAT+AGG | + | chr3.4:98984433-98984452 | MS.gene66828:intron | 30.0% |
| ! | TGATGTTGACCAAGATTTTA+AGG | + | chr3.4:98984050-98984069 | MS.gene66828:CDS | 30.0% |
| !! | GTGATTTGTTTCAGATTCAT+CGG | + | chr3.4:98985256-98985275 | MS.gene66828:intron | 30.0% |
| !!! | ACAAAGTTTTGTTAACTAGC+GGG | + | chr3.4:98984465-98984484 | MS.gene66828:intron | 30.0% |
| !!! | GTTGTCGATTTTTCATTTGT+TGG | + | chr3.4:98985355-98985374 | MS.gene66828:intron | 30.0% |
| AAAATCTTGGTCAACATCAC+AGG | - | chr3.4:98984049-98984068 | None:intergenic | 35.0% | |
| AAATGTGATTACCTGGAAGA+AGG | - | chr3.4:98983628-98983647 | None:intergenic | 35.0% | |
| AACTTGTCAGATCCATTTGA+AGG | - | chr3.4:98984641-98984660 | None:intergenic | 35.0% | |
| AATTAGTTCAAATCCCCCTA+TGG | - | chr3.4:98984411-98984430 | None:intergenic | 35.0% | |
| AGGTACTTTCATTATCCTCT+TGG | + | chr3.4:98984761-98984780 | MS.gene66828:intron | 35.0% | |
| ATACAATGGCATTGTAGGAT+AGG | - | chr3.4:98984563-98984582 | None:intergenic | 35.0% | |
| CAAGATGTTAGACTCAGAAT+TGG | + | chr3.4:98984223-98984242 | MS.gene66828:CDS | 35.0% | |
| CAATTCTGAGTCTAACATCT+TGG | - | chr3.4:98984225-98984244 | None:intergenic | 35.0% | |
| CTGTCAATAGTAGTGAATCA+CGG | - | chr3.4:98984510-98984529 | None:intergenic | 35.0% | |
| CTTAAAACTACTCTTGTTCC+AGG | + | chr3.4:98985554-98985573 | MS.gene66828:intron | 35.0% | |
| GAAGTTAACAAGACCATCTT+CGG | - | chr3.4:98984013-98984032 | None:intergenic | 35.0% | |
| GCAGATTACTAAATGTTGCA+AGG | + | chr3.4:98985121-98985140 | MS.gene66828:intron | 35.0% | |
| GGTTCCTTGTGAAAATTTGA+TGG | + | chr3.4:98984857-98984876 | MS.gene66828:intron | 35.0% | |
| TGAAAACTGGAAATTGTTCG+TGG | + | chr3.4:98985216-98985235 | MS.gene66828:intron | 35.0% | |
| TGCAGATTAGGGAGAATAAT+TGG | + | chr3.4:98985586-98985605 | MS.gene66828:CDS | 35.0% | |
| TTCACTACTATTGACAGGAT+TGG | + | chr3.4:98984513-98984532 | MS.gene66828:intron | 35.0% | |
| ! | ATATCGGTGTTCAGAAATAG+CGG | + | chr3.4:98984380-98984399 | MS.gene66828:intron | 35.0% |
| ! | CTGCTTCGCATGAATTTTTA+AGG | - | chr3.4:98983583-98983602 | None:intergenic | 35.0% |
| ! | GACACCATCAAATTTTCACA+AGG | - | chr3.4:98984864-98984883 | None:intergenic | 35.0% |
| ! | TTGCCGAGTTATTCTTTTCA+TGG | + | chr3.4:98985478-98985497 | MS.gene66828:intron | 35.0% |
| ! | TTTTTGTAGAGGAAATCCAG+AGG | + | chr3.4:98984157-98984176 | MS.gene66828:intron | 35.0% |
| !! | TGTGAAAATTTGATGGTGTC+AGG | + | chr3.4:98984864-98984883 | MS.gene66828:intron | 35.0% |
| !! | TGTTGACCAAGATTTTAAGG+AGG | + | chr3.4:98984053-98984072 | MS.gene66828:CDS | 35.0% |
| !!! | ATTTTGGGGCATTCATTCAT+TGG | - | chr3.4:98984281-98984300 | None:intergenic | 35.0% |
| !!! | CAAAGTTTTGTTAACTAGCG+GGG | + | chr3.4:98984466-98984485 | MS.gene66828:intron | 35.0% |
| !!! | CGCATGAATTTTTAAGGCTT+TGG | - | chr3.4:98983577-98983596 | None:intergenic | 35.0% |
| !!! | TTTTGGGGCATTCATTCATT+GGG | - | chr3.4:98984280-98984299 | None:intergenic | 35.0% |
| ACAAGAATGGTTCTTACACG+AGG | + | chr3.4:98984741-98984760 | MS.gene66828:intron | 40.0% | |
| AGGTTCCTTATGTGCAGATT+AGG | + | chr3.4:98985574-98985593 | MS.gene66828:intron | 40.0% | |
| ATGCAGACTACAAAGGTAGA+TGG | + | chr3.4:98985616-98985635 | MS.gene66828:CDS | 40.0% | |
| CAGCAGTTAAATGTAAGGCT+TGG | - | chr3.4:98985310-98985329 | None:intergenic | 40.0% | |
| CGTGATTCACTACTATTGAC+AGG | + | chr3.4:98984508-98984527 | MS.gene66828:intron | 40.0% | |
| CTGCGTACTATTAACAAGGA+CGG | - | chr3.4:98984917-98984936 | None:intergenic | 40.0% | |
| GCAACATTTAGTAATCTGCC+AGG | - | chr3.4:98985120-98985139 | None:intergenic | 40.0% | |
| GGTTCCTTATGTGCAGATTA+GGG | + | chr3.4:98985575-98985594 | MS.gene66828:intron | 40.0% | |
| TAATCTGCACATAAGGAACC+TGG | - | chr3.4:98985575-98985594 | None:intergenic | 40.0% | |
| TGATGTTCTGTTGATGCTCA+TGG | + | chr3.4:98985151-98985170 | MS.gene66828:intron | 40.0% | |
| TGCGTACTATTAACAAGGAC+GGG | - | chr3.4:98984916-98984935 | None:intergenic | 40.0% | |
| TGGATAGAAATGTCGAACGA+GGG | - | chr3.4:98983762-98983781 | None:intergenic | 40.0% | |
| TGGCTATGAAGCTATTGAAC+AGG | + | chr3.4:98984243-98984262 | MS.gene66828:CDS | 40.0% | |
| TGGTTCTTACAAGTACCAAG+AGG | - | chr3.4:98984779-98984798 | None:intergenic | 40.0% | |
| TTCTCCCTAATCTGCACATA+AGG | - | chr3.4:98985582-98985601 | None:intergenic | 40.0% | |
| ! | AAGCCTTATCCTACTAAGTG+GGG | + | chr3.4:98984981-98985000 | MS.gene66828:intron | 40.0% |
| ! | CAAGCCTTATCCTACTAAGT+GGG | + | chr3.4:98984980-98984999 | MS.gene66828:intron | 40.0% |
| ! | GATTACCTGGAAGAAGGTAT+TGG | - | chr3.4:98983622-98983641 | None:intergenic | 40.0% |
| ! | GGTGACACGAAAAGTTTTCT+TGG | - | chr3.4:98983992-98984011 | None:intergenic | 40.0% |
| ! | TTTGGGGCATTCATTCATTG+GGG | - | chr3.4:98984279-98984298 | None:intergenic | 40.0% |
| !! | AGTTTGTTTTTCGCTCAAGC+GGG | + | chr3.4:98984836-98984855 | MS.gene66828:intron | 40.0% |
| !! | CAGTTTGTTTTTCGCTCAAG+CGG | + | chr3.4:98984835-98984854 | MS.gene66828:intron | 40.0% |
| ATGGAGACATCTCTGCGATA+TGG | + | chr3.4:98983543-98983562 | MS.gene66828:CDS | 45.0% | |
| CAAGTCGTGTTATCCCAACA+AGG | + | chr3.4:98983688-98983707 | MS.gene66828:intron | 45.0% | |
| CCACTTAGTAGGATAAGGCT+TGG | - | chr3.4:98984982-98985001 | None:intergenic | 45.0% | |
| CTGGATAGAAATGTCGAACG+AGG | - | chr3.4:98983763-98983782 | None:intergenic | 45.0% | |
| CTTATCCTACTAAGTGGGGT+CGG | + | chr3.4:98984985-98985004 | MS.gene66828:intron | 45.0% | |
| GGAGAGCTTGACACGAAAAA+TGG | + | chr3.4:98983716-98983735 | MS.gene66828:CDS | 45.0% | |
| GTCAGGACTCACAATAGCTT+AGG | + | chr3.4:98984881-98984900 | MS.gene66828:intron | 45.0% | |
| TAGTAATCTGCCAGGCTTTG+TGG | - | chr3.4:98985112-98985131 | None:intergenic | 45.0% | |
| TAGTTCAAATCCCCCTATGG+TGG | - | chr3.4:98984408-98984427 | None:intergenic | 45.0% | |
| TCAGATTCATCGGTGCAGTT+AGG | + | chr3.4:98985266-98985285 | MS.gene66828:intron | 45.0% | |
| TGTTATCCCAACAAGGTTCG+CGG | + | chr3.4:98983695-98983714 | MS.gene66828:intron | 45.0% | |
| TTGTAGAGGAAATCCAGAGG+AGG | + | chr3.4:98984160-98984179 | MS.gene66828:intron | 45.0% | |
| TTGTAGTTATCAGCCACGCT+TGG | + | chr3.4:98983883-98983902 | MS.gene66828:intron | 45.0% | |
| ! | ACTTTTCGTGTCACCGAAGA+TGG | + | chr3.4:98983997-98984016 | MS.gene66828:CDS | 45.0% |
| ! | AGTAATCTGCCAGGCTTTGT+GGG | - | chr3.4:98985111-98985130 | None:intergenic | 45.0% |
| ! | CCAAGCCTTATCCTACTAAG+TGG | + | chr3.4:98984979-98984998 | MS.gene66828:intron | 45.0% |
| !! | AAAAAAAAAAAAAAAAATTC+AGG | - | chr3.4:98984140-98984159 | None:intergenic | 5.0% |
| AACTGACGCGTCTCCAATGA+CGG | - | chr3.4:98984820-98984839 | None:intergenic | 50.0% | |
| ACAGCGAGAGGTAGCTTAAG+TGG | - | chr3.4:98984341-98984360 | None:intergenic | 50.0% | |
| CGACACCAATACCTTCTTCC+AGG | + | chr3.4:98983614-98983633 | MS.gene66828:CDS | 50.0% | |
| CGACCCCACTTAGTAGGATA+AGG | - | chr3.4:98984987-98985006 | None:intergenic | 50.0% | |
| GACTAAAGCTGTACAGCGAG+AGG | - | chr3.4:98984353-98984372 | None:intergenic | 50.0% | |
| GAGACATCTCTGCGATATGG+AGG | + | chr3.4:98983546-98983565 | MS.gene66828:CDS | 50.0% | |
| GTTAACTAGCGGGGCTATAG+TGG | + | chr3.4:98984475-98984494 | MS.gene66828:intron | 50.0% | |
| TGAAAACTCAGCTCCTCCTC+TGG | - | chr3.4:98984176-98984195 | None:intergenic | 50.0% | |
| ! | ACGAGGGCACGCAAAGAATT+AGG | - | chr3.4:98983746-98983765 | None:intergenic | 50.0% |
| ! | AGGCTTTGTGGGACAACAAG+AGG | - | chr3.4:98985100-98985119 | None:intergenic | 50.0% |
| ! | GAGGAGGAGCTGAGTTTTCA+TGG | + | chr3.4:98984176-98984195 | MS.gene66828:CDS | 50.0% |
| ! | TCTTGTTGTCCCACAAAGCC+TGG | + | chr3.4:98985099-98985118 | MS.gene66828:intron | 50.0% |
| !! | AAATAGCGGTGCCACCATAG+GGG | + | chr3.4:98984394-98984413 | MS.gene66828:intron | 50.0% |
| !! | AGAAATAGCGGTGCCACCAT+AGG | + | chr3.4:98984392-98984411 | MS.gene66828:intron | 50.0% |
| !! | GAAATAGCGGTGCCACCATA+GGG | + | chr3.4:98984393-98984412 | MS.gene66828:intron | 50.0% |
| !! | TTATCAGCCACGCTTGGTGT+AGG | + | chr3.4:98983889-98983908 | MS.gene66828:CDS | 50.0% |
| AAGCTCTCCGCGAACCTTGT+TGG | - | chr3.4:98983705-98983724 | None:intergenic | 55.0% | |
| AGCTCTCCGCGAACCTTGTT+GGG | - | chr3.4:98983704-98983723 | None:intergenic | 55.0% | |
| TTGCACTCCTACACCAAGCG+TGG | - | chr3.4:98983899-98983918 | None:intergenic | 55.0% | |
| !! | AATAGCGGTGCCACCATAGG+GGG | + | chr3.4:98984395-98984414 | MS.gene66828:intron | 55.0% |
| ACTAAGTGGGGTCGGCTGCA+TGG | + | chr3.4:98984993-98985012 | MS.gene66828:intron | 60.0% | |
| TGCAGCCGACCCCACTTAGT+AGG | - | chr3.4:98984993-98985012 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 98983543 | 98985659 | 98983543 | ID=MS.gene66828 |
| chr3.4 | mRNA | 98983543 | 98985659 | 98983543 | ID=MS.gene66828.t1;Parent=MS.gene66828 |
| chr3.4 | exon | 98983543 | 98983635 | 98983543 | ID=MS.gene66828.t1.exon1;Parent=MS.gene66828.t1 |
| chr3.4 | CDS | 98983543 | 98983635 | 98983543 | ID=cds.MS.gene66828.t1;Parent=MS.gene66828.t1 |
| chr3.4 | exon | 98983710 | 98983784 | 98983710 | ID=MS.gene66828.t1.exon2;Parent=MS.gene66828.t1 |
| chr3.4 | CDS | 98983710 | 98983784 | 98983710 | ID=cds.MS.gene66828.t1;Parent=MS.gene66828.t1 |
| chr3.4 | exon | 98983889 | 98984074 | 98983889 | ID=MS.gene66828.t1.exon3;Parent=MS.gene66828.t1 |
| chr3.4 | CDS | 98983889 | 98984074 | 98983889 | ID=cds.MS.gene66828.t1;Parent=MS.gene66828.t1 |
| chr3.4 | exon | 98984166 | 98984264 | 98984166 | ID=MS.gene66828.t1.exon4;Parent=MS.gene66828.t1 |
| chr3.4 | CDS | 98984166 | 98984264 | 98984166 | ID=cds.MS.gene66828.t1;Parent=MS.gene66828.t1 |
| chr3.4 | exon | 98985576 | 98985659 | 98985576 | ID=MS.gene66828.t1.exon5;Parent=MS.gene66828.t1 |
| chr3.4 | CDS | 98985576 | 98985659 | 98985576 | ID=cds.MS.gene66828.t1;Parent=MS.gene66828.t1 |
| Gene Sequence |
| Protein sequence |
