Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67606.t1 | XP_003612265.1 | 97 | 233 | 7 | 0 | 1 | 233 | 94 | 326 | 2.60E-125 | 458 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67606.t1 | Q93VH2 | 38.5 | 182 | 105 | 4 | 47 | 223 | 137 | 316 | 4.8e-27 | 122.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67606.t1 | G7JYS6 | 97.0 | 233 | 7 | 0 | 1 | 233 | 94 | 326 | 1.9e-125 | 458.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene67606 | -0.816951 | 4.24E-52 | -1.69E-46 |
| MS.gene049222 | MS.gene67606 | -0.815684 | 8.15E-52 | -1.69E-46 |
| MS.gene049805 | MS.gene67606 | -0.809094 | 2.24E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene67606 | -0.802643 | 5.09E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene67606 | -0.808505 | 3.00E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene67606 | -0.801813 | 7.54E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene67606 | -0.80666 | 7.39E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene67606 | -0.825107 | 5.61E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene67606 | -0.800662 | 1.30E-48 | -1.69E-46 |
| MS.gene051874 | MS.gene67606 | -0.825638 | 4.20E-54 | -1.69E-46 |
| MS.gene052870 | MS.gene67606 | -0.802618 | 5.15E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene67606 | -0.802826 | 4.67E-49 | -1.69E-46 |
| MS.gene053104 | MS.gene67606 | -0.816122 | 6.51E-52 | -1.69E-46 |
| MS.gene053322 | MS.gene67606 | -0.804275 | 2.34E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene67606 | -0.805703 | 1.17E-49 | -1.69E-46 |
| MS.gene054003 | MS.gene67606 | -0.833914 | 4.06E-56 | -1.69E-46 |
| MS.gene054543 | MS.gene67606 | -0.802082 | 6.64E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene67606 | -0.801995 | 6.92E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene67606 | -0.811742 | 6.01E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene67606 | -0.803641 | 3.16E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene67606 | -0.806403 | 8.37E-50 | -1.69E-46 |
| MS.gene056422 | MS.gene67606 | -0.812368 | 4.39E-51 | -1.69E-46 |
| MS.gene056448 | MS.gene67606 | -0.801047 | 1.08E-48 | -1.69E-46 |
| MS.gene056511 | MS.gene67606 | -0.818319 | 2.09E-52 | -1.69E-46 |
| MS.gene057146 | MS.gene67606 | -0.829913 | 3.94E-55 | -1.69E-46 |
| MS.gene057734 | MS.gene67606 | -0.813912 | 2.01E-51 | -1.69E-46 |
| MS.gene057926 | MS.gene67606 | -0.824156 | 9.40E-54 | -1.69E-46 |
| MS.gene059305 | MS.gene67606 | -0.804858 | 1.77E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene67606 | -0.80517 | 1.52E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene67606 | -0.809486 | 1.85E-50 | -1.69E-46 |
| MS.gene059699 | MS.gene67606 | 0.807632 | 4.60E-50 | -1.69E-46 |
| MS.gene059703 | MS.gene67606 | 0.805659 | 1.20E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene67606 | -0.81573 | 7.96E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene67606 | -0.834204 | 3.43E-56 | -1.69E-46 |
| MS.gene060818 | MS.gene67606 | -0.859682 | 3.49E-63 | -1.69E-46 |
| MS.gene060837 | MS.gene67606 | -0.824634 | 7.26E-54 | -1.69E-46 |
| MS.gene061041 | MS.gene67606 | -0.812156 | 4.89E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTATTTGCAACATTAA+TGG | 0.190657 | 5.3:-13538304 | None:intergenic |
| ATTTCTTTACTTACATATAT+TGG | 0.231030 | 5.3:-13538488 | None:intergenic |
| TTTACTCTTTCAGGTGATAA+TGG | 0.294692 | 5.3:+13538093 | MS.gene67606:intron |
| AGTTCTTGAGCTACCGAATC+TGG | 0.317594 | 5.3:-13538737 | None:intergenic |
| CAACTAGGTTATTCACAAAC+TGG | 0.340562 | 5.3:-13537406 | None:intergenic |
| TACCGAATCTGGACCATCTA+TGG | 0.358074 | 5.3:-13538726 | None:intergenic |
| TATGTTCTGCCCATTGTTGT+AGG | 0.358421 | 5.3:+13537142 | MS.gene67606:CDS |
| GGGCAGAGTGCATAATAAAA+AGG | 0.382577 | 5.3:+13538547 | MS.gene67606:CDS |
| TTTATGATGTATTGCTTGAC+AGG | 0.409824 | 5.3:+13538573 | MS.gene67606:CDS |
| GGTTATTCACAAACTGGAAC+TGG | 0.445405 | 5.3:-13537400 | None:intergenic |
| GTTTGTTACAGTGCCATAGA+TGG | 0.457604 | 5.3:+13538713 | MS.gene67606:intron |
| TGCCATAGATGGTCCAGATT+CGG | 0.469346 | 5.3:+13538724 | MS.gene67606:CDS |
| TGCCATATTGCAGGATTGGC+CGG | 0.472759 | 5.3:+13537376 | MS.gene67606:intron |
| CATGATCTAGTCTTTCAACT+AGG | 0.480955 | 5.3:-13537421 | None:intergenic |
| ATAAGACTCGGCTATGGAAT+GGG | 0.490306 | 5.3:+13538527 | MS.gene67606:CDS |
| TATAAGACTCGGCTATGGAA+TGG | 0.494787 | 5.3:+13538526 | MS.gene67606:CDS |
| GCATACATACCTACAACAAT+GGG | 0.495198 | 5.3:-13537151 | None:intergenic |
| TGCAACATTAATGGCATCTG+AGG | 0.495726 | 5.3:-13538295 | None:intergenic |
| AGCATACATACCTACAACAA+TGG | 0.501223 | 5.3:-13537152 | None:intergenic |
| TTCACAAACTGGAACTGGTC+CGG | 0.513315 | 5.3:-13537395 | None:intergenic |
| TTTCTCAAGATTTCTTGTGA+TGG | 0.525235 | 5.3:+13537115 | MS.gene67606:CDS |
| AAATCTTCGTAAATCATCTC+AGG | 0.525481 | 5.3:+13538985 | MS.gene67606:CDS |
| GAAAAGTGATATTATTAGTG+TGG | 0.530123 | 5.3:+13538263 | MS.gene67606:CDS |
| GCAGAAACAATAGCACACTA+TGG | 0.532405 | 5.3:+13536959 | None:intergenic |
| TACCTGGCTGAGGTACAATC+TGG | 0.538203 | 5.3:-13538152 | None:intergenic |
| TGCCAGATTGTACCTCAGCC+AGG | 0.542240 | 5.3:+13538150 | MS.gene67606:CDS |
| GACGCTATAAGACTCGGCTA+TGG | 0.548905 | 5.3:+13538521 | MS.gene67606:CDS |
| GCAACATTAATGGCATCTGA+GGG | 0.557171 | 5.3:-13538294 | None:intergenic |
| TCCAGAAAATAGCTCGAGAA+GGG | 0.576030 | 5.3:+13537039 | MS.gene67606:CDS |
| TATGCATTTAGCTATCAAGC+AGG | 0.596160 | 5.3:+13538775 | MS.gene67606:CDS |
| ATAGTAGTTTATTCAGACAA+GGG | 0.597464 | 5.3:+13537062 | MS.gene67606:CDS |
| TTCACAGACGCTATAAGACT+CGG | 0.599122 | 5.3:+13538515 | MS.gene67606:CDS |
| TAATGTTGCAAATAAATGCA+AGG | 0.602512 | 5.3:+13538308 | MS.gene67606:CDS |
| TTCCAGAAAATAGCTCGAGA+AGG | 0.604172 | 5.3:+13537038 | MS.gene67606:CDS |
| CAATAGCACACTATGGAATG+TGG | 0.604628 | 5.3:+13536966 | MS.gene67606:CDS |
| GATAGTAGTTTATTCAGACA+AGG | 0.606215 | 5.3:+13537061 | MS.gene67606:CDS |
| CAGGAAAGATTTAATGACGC+AGG | 0.608205 | 5.3:+13538794 | MS.gene67606:CDS |
| AAGTTGCCAATACCTGGCTG+AGG | 0.635842 | 5.3:-13538162 | None:intergenic |
| CAACATTAATGGCATCTGAG+GGG | 0.647803 | 5.3:-13538293 | None:intergenic |
| TGAAGTGGAACAAGAGATCG+AGG | 0.688028 | 5.3:+13537283 | MS.gene67606:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAATTTTGATTTTTTAA+AGG | + | chr5.3:13538355-13538374 | MS.gene67606:intron | 10.0% |
| !!! | AGAAATTTTGATTTTTTAAA+GGG | + | chr5.3:13538356-13538375 | MS.gene67606:intron | 10.0% |
| !! | ATTTCTTTACTTACATATAT+TGG | - | chr5.3:13538491-13538510 | None:intergenic | 15.0% |
| !! | CAAATATAAAAATCATAAAG+AGG | - | chr5.3:13538455-13538474 | None:intergenic | 15.0% |
| !!! | GAAATTTTGATTTTTTAAAG+GGG | + | chr5.3:13538357-13538376 | MS.gene67606:intron | 15.0% |
| !! | AAAAATCAAAATTTCTTGAC+AGG | - | chr5.3:13538352-13538371 | None:intergenic | 20.0% |
| !! | AAAATCAAAATTTCTTGACA+GGG | - | chr5.3:13538351-13538370 | None:intergenic | 20.0% |
| !! | ACTAAAACAGAAAGAATTAT+TGG | + | chr5.3:13537911-13537930 | MS.gene67606:intron | 20.0% |
| !! | CAATTTGAATAAAGTTAAAC+AGG | + | chr5.3:13537948-13537967 | MS.gene67606:intron | 20.0% |
| !! | TTATATGTTAGGTATAGTTT+AGG | + | chr5.3:13537547-13537566 | MS.gene67606:intron | 20.0% |
| !!! | AATAAAAAAGCATAACAAGA+AGG | - | chr5.3:13538202-13538221 | None:intergenic | 20.0% |
| !!! | TAAATTCGTGTTTTATTGAA+CGG | + | chr5.3:13537212-13537231 | MS.gene67606:intron | 20.0% |
| !!! | TAATTCTTTCTGTTTTAGTA+TGG | - | chr5.3:13537910-13537929 | None:intergenic | 20.0% |
| !!! | TTGTTTTATTTTACTCTTTC+AGG | + | chr5.3:13538084-13538103 | MS.gene67606:intron | 20.0% |
| !!! | TTTTTATATTTGATTTGTGC+AGG | + | chr5.3:13538463-13538482 | MS.gene67606:intron | 20.0% |
| ! | AAAACATTAGAACAAGGATA+AGG | - | chr5.3:13538016-13538035 | None:intergenic | 25.0% |
| ! | AATCAAAATTTCCAAGAAGA+TGG | - | chr5.3:13537632-13537651 | None:intergenic | 25.0% |
| ! | AGAAATCTTGAGAAAAATTG+TGG | - | chr5.3:13537110-13537129 | None:intergenic | 25.0% |
| ! | ATAGTAGTTTATTCAGACAA+GGG | + | chr5.3:13537062-13537081 | MS.gene67606:CDS | 25.0% |
| ! | ATTACATTATACCATCTTCT+TGG | + | chr5.3:13537618-13537637 | MS.gene67606:intron | 25.0% |
| ! | GAAAAGTGATATTATTAGTG+TGG | + | chr5.3:13538263-13538282 | MS.gene67606:CDS | 25.0% |
| ! | GAAATCTTGAGAAAAATTGT+GGG | - | chr5.3:13537109-13537128 | None:intergenic | 25.0% |
| ! | GATGCAATTAGACTAAATAA+AGG | - | chr5.3:13537816-13537835 | None:intergenic | 25.0% |
| ! | GCATTTATTTGCAACATTAA+TGG | - | chr5.3:13538307-13538326 | None:intergenic | 25.0% |
| ! | TAATGTTGCAAATAAATGCA+AGG | + | chr5.3:13538308-13538327 | MS.gene67606:CDS | 25.0% |
| ! | TGAAATTATTTGCATGTAAG+AGG | - | chr5.3:13537975-13537994 | None:intergenic | 25.0% |
| ! | TGATTCTAAGCTTATATGTT+AGG | + | chr5.3:13537536-13537555 | MS.gene67606:intron | 25.0% |
| !! | ATATGGCATTTTATAAGGAT+CGG | - | chr5.3:13537364-13537383 | None:intergenic | 25.0% |
| !!! | ATGAGAGATTATAGCTTTTT+TGG | - | chr5.3:13537704-13537723 | None:intergenic | 25.0% |
| !!! | TGAGAGATTATAGCTTTTTT+GGG | - | chr5.3:13537703-13537722 | None:intergenic | 25.0% |
| !!! | TTTTTTGACCTGTATCTTAA+TGG | + | chr5.3:13537309-13537328 | MS.gene67606:intron | 25.0% |
| AAAAGTCAACAAACAAGCTT+AGG | - | chr5.3:13538939-13538958 | None:intergenic | 30.0% | |
| AAAGACTAGATCATGAAGTA+TGG | + | chr5.3:13537429-13537448 | MS.gene67606:intron | 30.0% | |
| AAATCTTCGTAAATCATCTC+AGG | + | chr5.3:13538985-13539004 | MS.gene67606:CDS | 30.0% | |
| ACGATATAGCATGAATGTAA+AGG | - | chr5.3:13538674-13538693 | None:intergenic | 30.0% | |
| ACGCAGGTAAAATATTGTTT+GGG | + | chr5.3:13538810-13538829 | MS.gene67606:intron | 30.0% | |
| ATATAGCATGAATGTAAAGG+AGG | - | chr5.3:13538671-13538690 | None:intergenic | 30.0% | |
| ATTAGAACAAGGATAAGGAT+GGG | - | chr5.3:13538011-13538030 | None:intergenic | 30.0% | |
| ATTTAAAAGTTGCCAATACC+TGG | - | chr5.3:13538171-13538190 | None:intergenic | 30.0% | |
| CTTATAAAATGCCATATTGC+AGG | + | chr5.3:13537367-13537386 | MS.gene67606:intron | 30.0% | |
| GATAGTAGTTTATTCAGACA+AGG | + | chr5.3:13537061-13537080 | MS.gene67606:CDS | 30.0% | |
| TGAAGCAATAGCAATGTATT+GGG | + | chr5.3:13538035-13538054 | MS.gene67606:intron | 30.0% | |
| TGATTTATTCTATGACCTAG+TGG | - | chr5.3:13537768-13537787 | None:intergenic | 30.0% | |
| TGCTTCAAAACATTAGAACA+AGG | - | chr5.3:13538022-13538041 | None:intergenic | 30.0% | |
| TTACACATCTGCAAGTATTA+TGG | + | chr5.3:13538853-13538872 | MS.gene67606:intron | 30.0% | |
| TTGAAGCAATAGCAATGTAT+TGG | + | chr5.3:13538034-13538053 | MS.gene67606:intron | 30.0% | |
| TTTATGATGTATTGCTTGAC+AGG | + | chr5.3:13538573-13538592 | MS.gene67606:CDS | 30.0% | |
| TTTCTCAAGATTTCTTGTGA+TGG | + | chr5.3:13537115-13537134 | MS.gene67606:CDS | 30.0% | |
| ! | CTGCAATATGGCATTTTATA+AGG | - | chr5.3:13537369-13537388 | None:intergenic | 30.0% |
| ! | GTTTTCAATCTGAGTTACAA+CGG | + | chr5.3:13536996-13537015 | MS.gene67606:CDS | 30.0% |
| ! | TTTACTCTTTCAGGTGATAA+TGG | + | chr5.3:13538093-13538112 | MS.gene67606:intron | 30.0% |
| !! | CTAATAATATCACTTTTCCC+TGG | - | chr5.3:13538261-13538280 | None:intergenic | 30.0% |
| AAAATGCCATATTGCAGGAT+TGG | + | chr5.3:13537372-13537391 | MS.gene67606:intron | 35.0% | |
| AAACTTGCACACAGAATCTA+TGG | - | chr5.3:13538648-13538667 | None:intergenic | 35.0% | |
| AAGCTTGAATACCCAAATCT+TGG | + | chr5.3:13538897-13538916 | MS.gene67606:intron | 35.0% | |
| AGCATACATACCTACAACAA+TGG | - | chr5.3:13537155-13537174 | None:intergenic | 35.0% | |
| AGTTTATAATTCCTTCAGCC+AGG | + | chr5.3:13538240-13538259 | MS.gene67606:intron | 35.0% | |
| CAACTAGGTTATTCACAAAC+TGG | - | chr5.3:13537409-13537428 | None:intergenic | 35.0% | |
| CATTAGAACAAGGATAAGGA+TGG | - | chr5.3:13538012-13538031 | None:intergenic | 35.0% | |
| CCATGAAAATGCCAAGATTT+GGG | - | chr5.3:13538911-13538930 | None:intergenic | 35.0% | |
| GACGCAGGTAAAATATTGTT+TGG | + | chr5.3:13538809-13538828 | MS.gene67606:intron | 35.0% | |
| GCATACATACCTACAACAAT+GGG | - | chr5.3:13537154-13537173 | None:intergenic | 35.0% | |
| GTTTATAATTCCTTCAGCCA+GGG | + | chr5.3:13538241-13538260 | MS.gene67606:intron | 35.0% | |
| TATGCATTTAGCTATCAAGC+AGG | + | chr5.3:13538775-13538794 | MS.gene67606:CDS | 35.0% | |
| TCCATGAAAATGCCAAGATT+TGG | - | chr5.3:13538912-13538931 | None:intergenic | 35.0% | |
| TTATTCTATGACCTAGTGGA+TGG | - | chr5.3:13537764-13537783 | None:intergenic | 35.0% | |
| ! | AAAGCTTTTAGATGCTGAAG+TGG | + | chr5.3:13537268-13537287 | MS.gene67606:CDS | 35.0% |
| ! | CATGATCTAGTCTTTCAACT+AGG | - | chr5.3:13537424-13537443 | None:intergenic | 35.0% |
| ! | TATTCTATGACCTAGTGGAT+GGG | - | chr5.3:13537763-13537782 | None:intergenic | 35.0% |
| !! | AGAGGTTTTGTCTAACTTCT+TGG | - | chr5.3:13538437-13538456 | None:intergenic | 35.0% |
| !! | ATTTTCTGGAAATGGTGACA+CGG | - | chr5.3:13537029-13537048 | None:intergenic | 35.0% |
| ATAAGACTCGGCTATGGAAT+GGG | + | chr5.3:13538527-13538546 | MS.gene67606:CDS | 40.0% | |
| CAACATTAATGGCATCTGAG+GGG | - | chr5.3:13538296-13538315 | None:intergenic | 40.0% | |
| CAATAGCACACTATGGAATG+TGG | + | chr5.3:13536966-13536985 | MS.gene67606:CDS | 40.0% | |
| CAGGAAAGATTTAATGACGC+AGG | + | chr5.3:13538794-13538813 | MS.gene67606:CDS | 40.0% | |
| CATCGATGCATATCCTATCA+CGG | - | chr5.3:13537181-13537200 | None:intergenic | 40.0% | |
| CTTCTTGGCACAAAATGCTT+AGG | - | chr5.3:13538422-13538441 | None:intergenic | 40.0% | |
| GCAACATTAATGGCATCTGA+GGG | - | chr5.3:13538297-13538316 | None:intergenic | 40.0% | |
| GCCAATGAACATTCAAGCAT+TGG | + | chr5.3:13537480-13537499 | MS.gene67606:intron | 40.0% | |
| GCCAATGCTTGAATGTTCAT+TGG | - | chr5.3:13537484-13537503 | None:intergenic | 40.0% | |
| GGGCAGAGTGCATAATAAAA+AGG | + | chr5.3:13538547-13538566 | MS.gene67606:CDS | 40.0% | |
| GGTTATTCACAAACTGGAAC+TGG | - | chr5.3:13537403-13537422 | None:intergenic | 40.0% | |
| TATAAGACTCGGCTATGGAA+TGG | + | chr5.3:13538526-13538545 | MS.gene67606:CDS | 40.0% | |
| TATGTATGCTATGCCGTGAT+AGG | + | chr5.3:13537165-13537184 | MS.gene67606:intron | 40.0% | |
| TATGTTCTGCCCATTGTTGT+AGG | + | chr5.3:13537142-13537161 | MS.gene67606:CDS | 40.0% | |
| TCCAGAAAATAGCTCGAGAA+GGG | + | chr5.3:13537039-13537058 | MS.gene67606:CDS | 40.0% | |
| TGCAACATTAATGGCATCTG+AGG | - | chr5.3:13538298-13538317 | None:intergenic | 40.0% | |
| TGCATCATTAGTCCTTCTCA+AGG | + | chr5.3:13537830-13537849 | MS.gene67606:intron | 40.0% | |
| TGGATGGGTACAGTATGATT+TGG | - | chr5.3:13537748-13537767 | None:intergenic | 40.0% | |
| TTCACAGACGCTATAAGACT+CGG | + | chr5.3:13538515-13538534 | MS.gene67606:CDS | 40.0% | |
| TTCCAGAAAATAGCTCGAGA+AGG | + | chr5.3:13537038-13537057 | MS.gene67606:CDS | 40.0% | |
| ! | AACGGTTCTTTTGTTGATGC+AGG | + | chr5.3:13537230-13537249 | MS.gene67606:intron | 40.0% |
| ! | CCCAAATCTTGGCATTTTCA+TGG | + | chr5.3:13538908-13538927 | MS.gene67606:intron | 40.0% |
| ! | GTTTGTTACAGTGCCATAGA+TGG | + | chr5.3:13538713-13538732 | MS.gene67606:intron | 40.0% |
| !! | CTCGAGCTATTTTCTGGAAA+TGG | - | chr5.3:13537037-13537056 | None:intergenic | 40.0% |
| !! | TTTTCTGGAAATGGTGACAC+GGG | - | chr5.3:13537028-13537047 | None:intergenic | 40.0% |
| !!! | AGCTTTTTTGGGAGTTCTCA+TGG | - | chr5.3:13537692-13537711 | None:intergenic | 40.0% |
| !!! | TGTTGACTTTTGCAGCTACA+TGG | + | chr5.3:13538948-13538967 | MS.gene67606:intron | 40.0% |
| ACACAGAATCTATGGTGGCA+AGG | - | chr5.3:13538640-13538659 | None:intergenic | 45.0% | |
| AGTTCTTGAGCTACCGAATC+TGG | - | chr5.3:13538740-13538759 | None:intergenic | 45.0% | |
| ATTGTACCTCAGCCAGGTAT+TGG | + | chr5.3:13538156-13538175 | MS.gene67606:intron | 45.0% | |
| CTCACACAATGTCCTTGAGA+AGG | - | chr5.3:13537845-13537864 | None:intergenic | 45.0% | |
| CTTGCACACAGAATCTATGG+TGG | - | chr5.3:13538645-13538664 | None:intergenic | 45.0% | |
| GTGCACAGCCATTAAGATAC+AGG | - | chr5.3:13537320-13537339 | None:intergenic | 45.0% | |
| TACCGAATCTGGACCATCTA+TGG | - | chr5.3:13538729-13538748 | None:intergenic | 45.0% | |
| TCATACTGTACCCATCCACT+AGG | + | chr5.3:13537750-13537769 | MS.gene67606:intron | 45.0% | |
| TGAAGTGGAACAAGAGATCG+AGG | + | chr5.3:13537283-13537302 | MS.gene67606:CDS | 45.0% | |
| TGCCATAGATGGTCCAGATT+CGG | + | chr5.3:13538724-13538743 | MS.gene67606:CDS | 45.0% | |
| TGGGTATTCAAGCTTGCAGA+AGG | - | chr5.3:13538892-13538911 | None:intergenic | 45.0% | |
| TTCACAAACTGGAACTGGTC+CGG | - | chr5.3:13537398-13537417 | None:intergenic | 45.0% | |
| !! | TATCACTTTTCCCTGGCTGA+AGG | - | chr5.3:13538254-13538273 | None:intergenic | 45.0% |
| !! | TCCCTTCTCGAGCTATTTTC+TGG | - | chr5.3:13537043-13537062 | None:intergenic | 45.0% |
| AAGTTGCCAATACCTGGCTG+AGG | - | chr5.3:13538165-13538184 | None:intergenic | 50.0% | |
| CAAGGATGCTACAGGTGACA+CGG | - | chr5.3:13538622-13538641 | None:intergenic | 50.0% | |
| GACGCTATAAGACTCGGCTA+TGG | + | chr5.3:13538521-13538540 | MS.gene67606:CDS | 50.0% | |
| TACCTGGCTGAGGTACAATC+TGG | - | chr5.3:13538155-13538174 | None:intergenic | 50.0% | |
| TATGGTGGCAAGGATGCTAC+AGG | - | chr5.3:13538630-13538649 | None:intergenic | 50.0% | |
| ! | TGCCATATTGCAGGATTGGC+CGG | + | chr5.3:13537376-13537395 | MS.gene67606:intron | 50.0% |
| GTCCGGCCAATCCTGCAATA+TGG | - | chr5.3:13537381-13537400 | None:intergenic | 55.0% | |
| TGCCAGATTGTACCTCAGCC+AGG | + | chr5.3:13538150-13538169 | MS.gene67606:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 13536963 | 13539015 | 13536963 | ID=MS.gene67606 |
| chr5.3 | mRNA | 13536963 | 13539015 | 13536963 | ID=MS.gene67606.t1;Parent=MS.gene67606 |
| chr5.3 | exon | 13536963 | 13537163 | 13536963 | ID=MS.gene67606.t1.exon1;Parent=MS.gene67606.t1 |
| chr5.3 | CDS | 13536963 | 13537163 | 13536963 | ID=cds.MS.gene67606.t1;Parent=MS.gene67606.t1 |
| chr5.3 | exon | 13537252 | 13537304 | 13537252 | ID=MS.gene67606.t1.exon2;Parent=MS.gene67606.t1 |
| chr5.3 | CDS | 13537252 | 13537304 | 13537252 | ID=cds.MS.gene67606.t1;Parent=MS.gene67606.t1 |
| chr5.3 | exon | 13537389 | 13537445 | 13537389 | ID=MS.gene67606.t1.exon3;Parent=MS.gene67606.t1 |
| chr5.3 | CDS | 13537389 | 13537445 | 13537389 | ID=cds.MS.gene67606.t1;Parent=MS.gene67606.t1 |
| chr5.3 | exon | 13538106 | 13538171 | 13538106 | ID=MS.gene67606.t1.exon4;Parent=MS.gene67606.t1 |
| chr5.3 | CDS | 13538106 | 13538171 | 13538106 | ID=cds.MS.gene67606.t1;Parent=MS.gene67606.t1 |
| chr5.3 | exon | 13538258 | 13538329 | 13538258 | ID=MS.gene67606.t1.exon5;Parent=MS.gene67606.t1 |
| chr5.3 | CDS | 13538258 | 13538329 | 13538258 | ID=cds.MS.gene67606.t1;Parent=MS.gene67606.t1 |
| chr5.3 | exon | 13538485 | 13538594 | 13538485 | ID=MS.gene67606.t1.exon6;Parent=MS.gene67606.t1 |
| chr5.3 | CDS | 13538485 | 13538594 | 13538485 | ID=cds.MS.gene67606.t1;Parent=MS.gene67606.t1 |
| chr5.3 | exon | 13538724 | 13538815 | 13538724 | ID=MS.gene67606.t1.exon7;Parent=MS.gene67606.t1 |
| chr5.3 | CDS | 13538724 | 13538815 | 13538724 | ID=cds.MS.gene67606.t1;Parent=MS.gene67606.t1 |
| chr5.3 | exon | 13538963 | 13539015 | 13538963 | ID=MS.gene67606.t1.exon8;Parent=MS.gene67606.t1 |
| chr5.3 | CDS | 13538963 | 13539015 | 13538963 | ID=cds.MS.gene67606.t1;Parent=MS.gene67606.t1 |
| Gene Sequence |
| Protein sequence |
