Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054543.t1 | XP_013454536.1 | 80.2 | 182 | 12 | 2 | 1 | 181 | 1 | 159 | 1.40E-20 | 109.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054543.t1 | A0A072UFV8 | 80.2 | 182 | 12 | 2 | 1 | 181 | 1 | 159 | 9.9e-21 | 109.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051228 | MS.gene054543 | 0.821523 | 3.86E-53 | -1.69E-46 |
| MS.gene052379 | MS.gene054543 | 0.81706 | 4.01E-52 | -1.69E-46 |
| MS.gene053322 | MS.gene054543 | 0.80428 | 2.33E-49 | -1.69E-46 |
| MS.gene053916 | MS.gene054543 | 0.804898 | 1.73E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene054642 | 0.806561 | 7.75E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene055397 | 0.810871 | 9.29E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene05592 | 0.839103 | 1.94E-57 | -1.69E-46 |
| MS.gene054543 | MS.gene057129 | 0.81713 | 3.87E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene05735 | 0.804353 | 2.25E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene060804 | 0.801224 | 9.96E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene060818 | 0.836923 | 7.04E-57 | -1.69E-46 |
| MS.gene054543 | MS.gene061041 | 0.804594 | 2.00E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene061200 | 0.8073 | 5.41E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene06142 | 0.812594 | 3.92E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene061606 | 0.809577 | 1.77E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene062839 | 0.805697 | 1.18E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene062891 | 0.831855 | 1.32E-55 | -1.69E-46 |
| MS.gene054543 | MS.gene062892 | 0.815375 | 9.55E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene062897 | 0.800554 | 1.36E-48 | -1.69E-46 |
| MS.gene054543 | MS.gene062941 | 0.810687 | 1.02E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene062942 | 0.839078 | 1.96E-57 | -1.69E-46 |
| MS.gene054543 | MS.gene064481 | 0.800346 | 1.50E-48 | -1.69E-46 |
| MS.gene054543 | MS.gene065215 | 0.829112 | 6.18E-55 | -1.69E-46 |
| MS.gene054543 | MS.gene066053 | 0.809637 | 1.71E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene067524 | 0.806123 | 9.59E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene06893 | 0.818631 | 1.77E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene069302 | 0.805919 | 1.06E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene06973 | 0.803813 | 2.91E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene070206 | 0.810382 | 1.19E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene070666 | 0.819296 | 1.25E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene07114 | 0.809093 | 2.24E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene071527 | 0.809461 | 1.87E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene072048 | 0.806844 | 6.75E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene07418 | 0.800466 | 1.42E-48 | -1.69E-46 |
| MS.gene054543 | MS.gene074248 | 0.802729 | 4.89E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene074249 | 0.814663 | 1.37E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene074567 | 0.805887 | 1.07E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene074568 | 0.803088 | 4.12E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene07625 | 0.802341 | 5.87E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene07904 | 0.826655 | 2.41E-54 | -1.69E-46 |
| MS.gene054543 | MS.gene08215 | 0.810517 | 1.11E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene09357 | 0.805175 | 1.52E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene20374 | 0.823246 | 1.54E-53 | -1.69E-46 |
| MS.gene054543 | MS.gene21116 | 0.814079 | 1.85E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene22206 | 0.812797 | 3.54E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene22209 | 0.81277 | 3.59E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene23271 | 0.826805 | 2.22E-54 | -1.69E-46 |
| MS.gene054543 | MS.gene23369 | 0.818441 | 1.96E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene23417 | 0.824239 | 8.99E-54 | -1.69E-46 |
| MS.gene054543 | MS.gene23914 | 0.801695 | 7.97E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene25139 | 0.821717 | 3.48E-53 | -1.69E-46 |
| MS.gene054543 | MS.gene26917 | 0.809041 | 2.30E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene27498 | 0.810218 | 1.29E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene31724 | 0.807764 | 4.31E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene32234 | 0.8042 | 2.42E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene32425 | 0.804111 | 2.53E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene32635 | 0.801745 | 7.79E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene33187 | 0.839178 | 1.85E-57 | -1.69E-46 |
| MS.gene054543 | MS.gene33534 | 0.819812 | 9.54E-53 | -1.69E-46 |
| MS.gene054543 | MS.gene37159 | 0.802681 | 5.00E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene38586 | 0.811373 | 7.23E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene46942 | 0.813236 | 2.84E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene47784 | 0.822192 | 2.70E-53 | -1.69E-46 |
| MS.gene054543 | MS.gene48278 | 0.823219 | 1.56E-53 | -1.69E-46 |
| MS.gene054543 | MS.gene48355 | 0.828027 | 1.13E-54 | -1.69E-46 |
| MS.gene054543 | MS.gene49257 | 0.824316 | 8.62E-54 | -1.69E-46 |
| MS.gene054543 | MS.gene50731 | 0.830396 | 3.01E-55 | -1.69E-46 |
| MS.gene054543 | MS.gene51599 | 0.812595 | 3.92E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene54465 | 0.811346 | 7.33E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene55694 | 0.800685 | 1.28E-48 | -1.69E-46 |
| MS.gene054543 | MS.gene60296 | 0.836159 | 1.10E-56 | -1.69E-46 |
| MS.gene054543 | MS.gene62865 | 0.802557 | 5.30E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene64006 | 0.805318 | 1.41E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene64414 | 0.817746 | 2.81E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene64678 | 0.802416 | 5.67E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene66434 | 0.819976 | 8.75E-53 | -1.69E-46 |
| MS.gene054543 | MS.gene66438 | 0.811671 | 6.23E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene66460 | 0.819066 | 1.41E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene66826 | 0.802225 | 6.21E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene67606 | -0.802082 | 6.64E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene68130 | 0.806089 | 9.74E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene68944 | 0.80166 | 8.11E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene69489 | 0.801737 | 7.82E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene70417 | 0.809882 | 1.52E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene71907 | 0.80204 | 6.78E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene74225 | 0.826002 | 3.45E-54 | -1.69E-46 |
| MS.gene054543 | MS.gene76628 | 0.820984 | 5.14E-53 | -1.69E-46 |
| MS.gene054543 | MS.gene76905 | 0.824629 | 7.28E-54 | -1.69E-46 |
| MS.gene054543 | MS.gene76907 | 0.823699 | 1.20E-53 | -1.69E-46 |
| MS.gene054543 | MS.gene76908 | 0.819441 | 1.16E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene77868 | 0.802734 | 4.88E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene77928 | 0.815436 | 9.25E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene78724 | 0.810344 | 1.21E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene79026 | 0.816383 | 5.69E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene80141 | 0.810319 | 1.22E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene80968 | 0.817666 | 2.93E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene80969 | 0.829775 | 4.26E-55 | -1.69E-46 |
| MS.gene054543 | MS.gene80970 | 0.819685 | 1.02E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene83615 | 0.803691 | 3.09E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene84575 | 0.809342 | 1.98E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene85591 | 0.805128 | 1.55E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene85923 | 0.819085 | 1.40E-52 | -1.69E-46 |
| MS.gene054543 | MS.gene89545 | 0.823167 | 1.60E-53 | -1.69E-46 |
| MS.gene054543 | MS.gene90788 | 0.807517 | 4.86E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene92218 | 0.81217 | 4.85E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene92661 | 0.813393 | 2.62E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene95520 | 0.810932 | 9.01E-51 | -1.69E-46 |
| MS.gene054543 | MS.gene95570 | 0.822068 | 2.89E-53 | -1.69E-46 |
| MS.gene054543 | MS.gene95695 | 0.80034 | 1.51E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054543.t1 | MTR_4g007620 | 50.549 | 182 | 63 | 4 | 1 | 181 | 13 | 168 | 3.10e-23 | 90.9 |
| MS.gene054543.t1 | MTR_4g007560 | 62.500 | 80 | 23 | 1 | 1 | 73 | 1 | 80 | 2.19e-21 | 85.9 |
| MS.gene054543.t1 | MTR_4g007570 | 40.217 | 184 | 54 | 5 | 1 | 181 | 1 | 131 | 2.37e-21 | 85.1 |
| MS.gene054543.t1 | MTR_4g007590 | 53.488 | 86 | 30 | 2 | 1 | 76 | 1 | 86 | 3.61e-19 | 79.7 |
| MS.gene054543.t1 | MTR_4g007580 | 35.714 | 182 | 62 | 6 | 1 | 181 | 1 | 128 | 7.84e-13 | 62.8 |
| MS.gene054543.t1 | MTR_4g007640 | 45.304 | 181 | 64 | 2 | 1 | 181 | 1 | 146 | 1.10e-12 | 62.8 |
| MS.gene054543.t1 | MTR_4g007670 | 88.889 | 27 | 3 | 0 | 155 | 181 | 109 | 135 | 4.94e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATGGGAGGAGGTGGATT+TGG | 0.280190 | 4.1:+87808550 | MS.gene054543:CDS |
| GGAGGAGGTGGAAGGGGAGG+AGG | 0.294260 | 4.1:+87808496 | MS.gene054543:CDS |
| ACGATAATAGGAAATTTATA+TGG | 0.302449 | 4.1:+87808367 | MS.gene054543:intron |
| GGAGGTGGAAGGGGAGGAGG+TGG | 0.304793 | 4.1:+87808499 | MS.gene054543:CDS |
| GAACAAGCACATGAGCTTAA+TGG | 0.312160 | 4.1:+87808237 | MS.gene054543:CDS |
| GCCTTCATCTTCATTTGAAA+TGG | 0.326206 | 4.1:-87808193 | None:intergenic |
| AGGGGAGGAGGTGGATTTAG+TGG | 0.341806 | 4.1:+87808508 | MS.gene054543:CDS |
| GGTGGAGGAAAGGGAGGAGG+TGG | 0.346499 | 4.1:+87808574 | MS.gene054543:CDS |
| GGAAAGGGAGGAGGTGGAAT+GGG | 0.349740 | 4.1:+87808580 | MS.gene054543:CDS |
| GGATTTGGAGGAGGAGTAGC+AGG | 0.351628 | 4.1:+87808616 | MS.gene054543:CDS |
| AAGGGAGGAGGTGGAATGGG+AGG | 0.356510 | 4.1:+87808583 | MS.gene054543:CDS |
| GGAGGAGGTGGAATGGGAGG+AGG | 0.381242 | 4.1:+87808541 | MS.gene054543:CDS |
| GGATTTGGAGGTGGAGGAAA+GGG | 0.386379 | 4.1:+87808565 | MS.gene054543:CDS |
| GGAGGTGGAATGGGAGGAGG+TGG | 0.390133 | 4.1:+87808544 | MS.gene054543:CDS |
| TTTGGAGGTGGAGGAAAGGG+AGG | 0.396785 | 4.1:+87808568 | MS.gene054543:CDS |
| GGAGGAGGTGGAATGGGAGG+GGG | 0.398655 | 4.1:+87808586 | MS.gene054543:CDS |
| CATGTGCTTGTTCATTACTC+TGG | 0.404052 | 4.1:-87808227 | None:intergenic |
| TCGACGGGAGGAGGTGGAAG+GGG | 0.410147 | 4.1:+87808490 | MS.gene054543:CDS |
| ATAGGAAATTTATATGGAAA+TGG | 0.411309 | 4.1:+87808373 | MS.gene054543:intron |
| GAGCATTTGAGATGATCAAT+AGG | 0.414061 | 4.1:-87808167 | None:intergenic |
| GCAAGCGGAGGAGGTGGAAT+GGG | 0.415178 | 4.1:+87808535 | MS.gene054543:CDS |
| AGGAAAGGGAGGAGGTGGAA+TGG | 0.417507 | 4.1:+87808579 | MS.gene054543:CDS |
| GGAGCGGCCGGTGGAATTAT+CGG | 0.418438 | 4.1:+87808640 | MS.gene054543:CDS |
| GGAGGTGGAGGAAAGGGAGG+AGG | 0.423397 | 4.1:+87808571 | MS.gene054543:CDS |
| ACGGGAGGAGGTGGAAGGGG+AGG | 0.424441 | 4.1:+87808493 | MS.gene054543:CDS |
| TGGATTTGGAGGTGGAGGAA+AGG | 0.425116 | 4.1:+87808564 | MS.gene054543:CDS |
| GGTGGGAAGGGATTTGGAGG+AGG | 0.425225 | 4.1:+87808607 | MS.gene054543:CDS |
| GGAGTAGCAGGTGGAGCGGC+CGG | 0.432536 | 4.1:+87808628 | MS.gene054543:CDS |
| GGGAGGAGGTGGAATGGGAG+GGG | 0.432996 | 4.1:+87808585 | MS.gene054543:CDS |
| ATGGGAGGAGGTGGATTTGG+AGG | 0.433737 | 4.1:+87808553 | MS.gene054543:CDS |
| ATTATCGGTGGTGGAATTGT+AGG | 0.436864 | 4.1:+87808655 | MS.gene054543:CDS |
| TGAAGATAAACATGAATTGT+CGG | 0.447709 | 4.1:+87808453 | MS.gene054543:CDS |
| GGAGGTGGATTTGGAGGTGG+AGG | 0.460844 | 4.1:+87808559 | MS.gene054543:CDS |
| GGAGGAGGTGGATTTGGAGG+TGG | 0.476941 | 4.1:+87808556 | MS.gene054543:CDS |
| AGGGAGGAGGTGGAATGGGA+GGG | 0.484959 | 4.1:+87808584 | MS.gene054543:CDS |
| AGTGGAGGTGCAAGCGGAGG+AGG | 0.488977 | 4.1:+87808526 | MS.gene054543:CDS |
| GCCATTTCAAATGAAGATGA+AGG | 0.496545 | 4.1:+87808192 | MS.gene054543:CDS |
| GCCGGTGGAATTATCGGTGG+TGG | 0.507892 | 4.1:+87808646 | MS.gene054543:CDS |
| GGAGGTGCAAGCGGAGGAGG+TGG | 0.508022 | 4.1:+87808529 | MS.gene054543:CDS |
| TGCAAGCGGAGGAGGTGGAA+TGG | 0.508541 | 4.1:+87808534 | MS.gene054543:CDS |
| TTTCGACGGGAGGAGGTGGA+AGG | 0.517005 | 4.1:+87808488 | MS.gene054543:CDS |
| AGCGGAGGAGGTGGAATGGG+AGG | 0.541101 | 4.1:+87808538 | MS.gene054543:CDS |
| GCAAATCGCGGTCACAATGG+TGG | 0.544739 | 4.1:+87808688 | MS.gene054543:CDS |
| TTCGACGGGAGGAGGTGGAA+GGG | 0.547737 | 4.1:+87808489 | MS.gene054543:CDS |
| GTAGCAGGTGGAGCGGCCGG+TGG | 0.556374 | 4.1:+87808631 | MS.gene054543:CDS |
| AGGAGGAGTAGCAGGTGGAG+CGG | 0.582710 | 4.1:+87808624 | MS.gene054543:CDS |
| CAAATCGCGGTCACAATGGT+GGG | 0.586802 | 4.1:+87808689 | MS.gene054543:CDS |
| GGCGGCGCAGTTGCAAATCG+CGG | 0.603738 | 4.1:+87808676 | MS.gene054543:CDS |
| TCCTCCCGTCGAAAACCTCA+TGG | 0.608672 | 4.1:-87808479 | None:intergenic |
| GGAGGAGGTGGATTTAGTGG+AGG | 0.619290 | 4.1:+87808511 | MS.gene054543:CDS |
| GGATTTAGTGGAGGTGCAAG+CGG | 0.621029 | 4.1:+87808520 | MS.gene054543:CDS |
| TCCACCACCGATAATTCCAC+CGG | 0.625861 | 4.1:-87808647 | None:intergenic |
| GGTCACAATGGTGGGTACAA+TGG | 0.639906 | 4.1:+87808697 | MS.gene054543:CDS |
| TTTAGTGGAGGTGCAAGCGG+AGG | 0.644874 | 4.1:+87808523 | MS.gene054543:CDS |
| ATGAATTGTCGGTTGCCATG+AGG | 0.661511 | 4.1:+87808464 | MS.gene054543:CDS |
| TTTGGAGGAGGAGTAGCAGG+TGG | 0.662305 | 4.1:+87808619 | MS.gene054543:CDS |
| ATCGGTGGTGGAATTGTAGG+CGG | 0.663727 | 4.1:+87808658 | MS.gene054543:CDS |
| GTTGCAAATCGCGGTCACAA+TGG | 0.665083 | 4.1:+87808685 | MS.gene054543:CDS |
| GCGGCCGGTGGAATTATCGG+TGG | 0.683638 | 4.1:+87808643 | MS.gene054543:CDS |
| GTAACATAGAAGTCTCCACA+AGG | 0.724906 | 4.1:+87808395 | MS.gene054543:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTACTTGTTTAAAA+AGG | - | chr4.1:87808276-87808295 | None:intergenic | 15.0% |
| !! | ACGATAATAGGAAATTTATA+TGG | + | chr4.1:87808367-87808386 | MS.gene054543:intron | 20.0% |
| !! | ATAGGAAATTTATATGGAAA+TGG | + | chr4.1:87808373-87808392 | MS.gene054543:intron | 20.0% |
| !! | TTTACTTGTTTAAAAAGGTA+AGG | - | chr4.1:87808271-87808290 | None:intergenic | 20.0% |
| !!! | ACGTGTTTTTATTTTAATCT+TGG | + | chr4.1:87808324-87808343 | MS.gene054543:intron | 20.0% |
| ! | TGAAGATAAACATGAATTGT+CGG | + | chr4.1:87808453-87808472 | MS.gene054543:CDS | 25.0% |
| !! | TTGTGTTATTCAACGATAAT+AGG | + | chr4.1:87808355-87808374 | MS.gene054543:intron | 25.0% |
| AATGTTGAGACACAAAAATG+AGG | - | chr4.1:87808757-87808776 | None:intergenic | 30.0% | |
| GAACAACAAAAATGTGATTG+TGG | + | chr4.1:87808420-87808439 | MS.gene054543:CDS | 30.0% | |
| ! | TGATTTTATGTATGAGCTTC+TGG | + | chr4.1:87808776-87808795 | MS.gene054543:CDS | 30.0% |
| !!! | ATTTTTGTTGTTCAACCTTG+TGG | - | chr4.1:87808413-87808432 | None:intergenic | 30.0% |
| GCCATTTCAAATGAAGATGA+AGG | + | chr4.1:87808192-87808211 | MS.gene054543:CDS | 35.0% | |
| GCCTTCATCTTCATTTGAAA+TGG | - | chr4.1:87808196-87808215 | None:intergenic | 35.0% | |
| ! | GAGCATTTGAGATGATCAAT+AGG | - | chr4.1:87808170-87808189 | None:intergenic | 35.0% |
| CATGTGCTTGTTCATTACTC+TGG | - | chr4.1:87808230-87808249 | None:intergenic | 40.0% | |
| GAACAAGCACATGAGCTTAA+TGG | + | chr4.1:87808237-87808256 | MS.gene054543:CDS | 40.0% | |
| GTAACATAGAAGTCTCCACA+AGG | + | chr4.1:87808395-87808414 | MS.gene054543:CDS | 40.0% | |
| !! | ATTATCGGTGGTGGAATTGT+AGG | + | chr4.1:87808655-87808674 | MS.gene054543:CDS | 40.0% |
| ! | ATGAATTGTCGGTTGCCATG+AGG | + | chr4.1:87808464-87808483 | MS.gene054543:CDS | 45.0% |
| CAAATCGCGGTCACAATGGT+GGG | + | chr4.1:87808689-87808708 | MS.gene054543:CDS | 50.0% | |
| GGATTTGGAGGTGGAGGAAA+GGG | + | chr4.1:87808565-87808584 | MS.gene054543:CDS | 50.0% | |
| GTTGCAAATCGCGGTCACAA+TGG | + | chr4.1:87808685-87808704 | MS.gene054543:CDS | 50.0% | |
| TCCACCACCGATAATTCCAC+CGG | - | chr4.1:87808650-87808669 | None:intergenic | 50.0% | |
| TGGATTTGGAGGTGGAGGAA+AGG | + | chr4.1:87808564-87808583 | MS.gene054543:CDS | 50.0% | |
| ! | GGATTTAGTGGAGGTGCAAG+CGG | + | chr4.1:87808520-87808539 | MS.gene054543:CDS | 50.0% |
| ! | GGTTGCCATGAGGTTTTCGA+CGG | + | chr4.1:87808474-87808493 | MS.gene054543:CDS | 50.0% |
| ! | GTTGCCATGAGGTTTTCGAC+GGG | + | chr4.1:87808475-87808494 | MS.gene054543:CDS | 50.0% |
| !! | ATCGGTGGTGGAATTGTAGG+CGG | + | chr4.1:87808658-87808677 | MS.gene054543:CDS | 50.0% |
| !! | GGTCACAATGGTGGGTACAA+TGG | + | chr4.1:87808697-87808716 | MS.gene054543:CDS | 50.0% |
| AGGAAAGGGAGGAGGTGGAA+TGG | + | chr4.1:87808579-87808598 | MS.gene054543:CDS | 55.0% | |
| GCAAATCGCGGTCACAATGG+TGG | + | chr4.1:87808688-87808707 | MS.gene054543:CDS | 55.0% | |
| GGAAAGGGAGGAGGTGGAAT+GGG | + | chr4.1:87808580-87808599 | MS.gene054543:CDS | 55.0% | |
| GGATTTGGAGGAGGAGTAGC+AGG | + | chr4.1:87808616-87808635 | MS.gene054543:CDS | 55.0% | |
| TCCTCCCGTCGAAAACCTCA+TGG | - | chr4.1:87808482-87808501 | None:intergenic | 55.0% | |
| TTTGGAGGAGGAGTAGCAGG+TGG | + | chr4.1:87808619-87808638 | MS.gene054543:CDS | 55.0% | |
| TTTGGAGGTGGAGGAAAGGG+AGG | + | chr4.1:87808568-87808587 | MS.gene054543:CDS | 55.0% | |
| ! | AGGGGAGGAGGTGGATTTAG+TGG | + | chr4.1:87808508-87808527 | MS.gene054543:CDS | 55.0% |
| ! | ATGAGGTTTTCGACGGGAGG+AGG | + | chr4.1:87808481-87808500 | MS.gene054543:CDS | 55.0% |
| ! | ATGGGAGGAGGTGGATTTGG+AGG | + | chr4.1:87808553-87808572 | MS.gene054543:CDS | 55.0% |
| ! | GGAATGGGAGGAGGTGGATT+TGG | + | chr4.1:87808550-87808569 | MS.gene054543:CDS | 55.0% |
| ! | GGAGGAGGTGGATTTAGTGG+AGG | + | chr4.1:87808511-87808530 | MS.gene054543:CDS | 55.0% |
| ! | TTTAGTGGAGGTGCAAGCGG+AGG | + | chr4.1:87808523-87808542 | MS.gene054543:CDS | 55.0% |
| AAGGGAGGAGGTGGAATGGG+AGG | + | chr4.1:87808583-87808602 | MS.gene054543:CDS | 60.0% | |
| AGGAGGAGTAGCAGGTGGAG+CGG | + | chr4.1:87808624-87808643 | MS.gene054543:CDS | 60.0% | |
| AGGGAGGAGGTGGAATGGGA+GGG | + | chr4.1:87808584-87808603 | MS.gene054543:CDS | 60.0% | |
| GCAAGCGGAGGAGGTGGAAT+GGG | + | chr4.1:87808535-87808554 | MS.gene054543:CDS | 60.0% | |
| GCCGGTGGAATTATCGGTGG+TGG | + | chr4.1:87808646-87808665 | MS.gene054543:CDS | 60.0% | |
| GGAGCGGCCGGTGGAATTAT+CGG | + | chr4.1:87808640-87808659 | MS.gene054543:CDS | 60.0% | |
| GGTGGGAAGGGATTTGGAGG+AGG | + | chr4.1:87808607-87808626 | MS.gene054543:CDS | 60.0% | |
| TGCAAGCGGAGGAGGTGGAA+TGG | + | chr4.1:87808534-87808553 | MS.gene054543:CDS | 60.0% | |
| TTCGACGGGAGGAGGTGGAA+GGG | + | chr4.1:87808489-87808508 | MS.gene054543:CDS | 60.0% | |
| TTTCGACGGGAGGAGGTGGA+AGG | + | chr4.1:87808488-87808507 | MS.gene054543:CDS | 60.0% | |
| ! | AGGTTTTCGACGGGAGGAGG+TGG | + | chr4.1:87808484-87808503 | MS.gene054543:CDS | 60.0% |
| ! | GCCATGAGGTTTTCGACGGG+AGG | + | chr4.1:87808478-87808497 | MS.gene054543:CDS | 60.0% |
| ! | GGAGGAGGTGGATTTGGAGG+TGG | + | chr4.1:87808556-87808575 | MS.gene054543:CDS | 60.0% |
| ! | GGAGGTGGATTTGGAGGTGG+AGG | + | chr4.1:87808559-87808578 | MS.gene054543:CDS | 60.0% |
| AGCGGAGGAGGTGGAATGGG+AGG | + | chr4.1:87808538-87808557 | MS.gene054543:CDS | 65.0% | |
| GAGGTGGAATGGGAGGGGGT+GGG | + | chr4.1:87808590-87808609 | MS.gene054543:CDS | 65.0% | |
| GCGGCCGGTGGAATTATCGG+TGG | + | chr4.1:87808643-87808662 | MS.gene054543:CDS | 65.0% | |
| GGAATGGGAGGGGGTGGGAA+GGG | + | chr4.1:87808595-87808614 | MS.gene054543:CDS | 65.0% | |
| GGAGGAGGTGGAATGGGAGG+AGG | + | chr4.1:87808541-87808560 | MS.gene054543:CDS | 65.0% | |
| GGAGGAGGTGGAATGGGAGG+GGG | + | chr4.1:87808541-87808560 | MS.gene054543:CDS | 65.0% | |
| GGAGGGGGTGGGAAGGGATT+TGG | + | chr4.1:87808601-87808620 | MS.gene054543:CDS | 65.0% | |
| GGAGGTGGAATGGGAGGAGG+TGG | + | chr4.1:87808544-87808563 | MS.gene054543:CDS | 65.0% | |
| GGAGGTGGAGGAAAGGGAGG+AGG | + | chr4.1:87808571-87808590 | MS.gene054543:CDS | 65.0% | |
| GGCGGCGCAGTTGCAAATCG+CGG | + | chr4.1:87808676-87808695 | MS.gene054543:CDS | 65.0% | |
| GGGAGGAGGTGGAATGGGAG+GGG | + | chr4.1:87808585-87808604 | MS.gene054543:CDS | 65.0% | |
| GGGGGTGGGAAGGGATTTGG+AGG | + | chr4.1:87808604-87808623 | MS.gene054543:CDS | 65.0% | |
| GGTGGAGGAAAGGGAGGAGG+TGG | + | chr4.1:87808574-87808593 | MS.gene054543:CDS | 65.0% | |
| TCGACGGGAGGAGGTGGAAG+GGG | + | chr4.1:87808490-87808509 | MS.gene054543:CDS | 65.0% | |
| TGGAATGGGAGGGGGTGGGA+AGG | + | chr4.1:87808594-87808613 | MS.gene054543:CDS | 65.0% | |
| ! | AGTGGAGGTGCAAGCGGAGG+AGG | + | chr4.1:87808526-87808545 | MS.gene054543:CDS | 65.0% |
| ACGGGAGGAGGTGGAAGGGG+AGG | + | chr4.1:87808493-87808512 | MS.gene054543:CDS | 70.0% | |
| GGAGGAGGTGGAAGGGGAGG+AGG | + | chr4.1:87808496-87808515 | MS.gene054543:CDS | 70.0% | |
| GGAGGTGGAAGGGGAGGAGG+TGG | + | chr4.1:87808499-87808518 | MS.gene054543:CDS | 70.0% | |
| GGAGGTGGAATGGGAGGGGG+TGG | + | chr4.1:87808589-87808608 | MS.gene054543:CDS | 70.0% | |
| GGAGTAGCAGGTGGAGCGGC+CGG | + | chr4.1:87808628-87808647 | MS.gene054543:CDS | 70.0% | |
| ! | GGAGGTGCAAGCGGAGGAGG+TGG | + | chr4.1:87808529-87808548 | MS.gene054543:CDS | 70.0% |
| GTAGCAGGTGGAGCGGCCGG+TGG | + | chr4.1:87808631-87808650 | MS.gene054543:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 87808141 | 87808804 | 87808141 | ID=MS.gene054543 |
| chr4.1 | mRNA | 87808141 | 87808804 | 87808141 | ID=MS.gene054543.t1;Parent=MS.gene054543 |
| chr4.1 | exon | 87808141 | 87808258 | 87808141 | ID=MS.gene054543.t1.exon1;Parent=MS.gene054543.t1 |
| chr4.1 | CDS | 87808141 | 87808258 | 87808141 | ID=cds.MS.gene054543.t1;Parent=MS.gene054543.t1 |
| chr4.1 | exon | 87808377 | 87808804 | 87808377 | ID=MS.gene054543.t1.exon2;Parent=MS.gene054543.t1 |
| chr4.1 | CDS | 87808377 | 87808804 | 87808377 | ID=cds.MS.gene054543.t1;Parent=MS.gene054543.t1 |
| Gene Sequence |
| Protein sequence |
