AlfalfaGEDB | MS.gene68028

M. sativa cultivar XinJiangDaYe / MS.gene68028

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF02213.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68028.t1	XP_003612115.1	93.5	709	44	1	1	709	1	707	0.00E+00	1354.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68028.t1	Q9SD34	42.6	230	118	5	10	229	44	269	2.3e-43	178.7
MS.gene68028.t1	Q9SD34	26.1	257	144	8	234	484	636	852	2.6e-10	68.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68028.t1	G7KGD1	93.5	709	44	1	1	709	1	707	0.0e+00	1354.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene68028	0.813731	2.21E-51	-1.69E-46
MS.gene049983	MS.gene68028	0.816424	5.57E-52	-1.69E-46
MS.gene050213	MS.gene68028	0.821122	4.78E-53	-1.69E-46
MS.gene050414	MS.gene68028	0.836865	7.28E-57	-1.69E-46
MS.gene050646	MS.gene68028	0.814753	1.31E-51	-1.69E-46
MS.gene050654	MS.gene68028	0.820446	6.83E-53	-1.69E-46
MS.gene050669	MS.gene68028	0.821127	4.76E-53	-1.69E-46
MS.gene050759	MS.gene68028	0.808103	3.65E-50	-1.69E-46
MS.gene050962	MS.gene68028	0.80522	1.48E-49	-1.69E-46
MS.gene051226	MS.gene68028	0.822504	2.29E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68028.t1	MTR_5g021450	95.910	709	27	1	1	709	1	707	0.0	1369
MS.gene68028.t1	MTR_5g021450	91.961	709	28	2	1	709	1	680	0.0	1296
MS.gene68028.t1	MTR_5g021500	65.236	233	73	5	33	262	60	287	1.65e-91	311
MS.gene68028.t1	MTR_5g021500	41.667	504	192	11	251	696	650	1109	1.14e-83	288
MS.gene68028.t1	MTR_3g117490	58.696	184	74	2	63	245	220	402	1.10e-67	243
MS.gene68028.t1	MTR_3g117490	59.649	57	23	0	336	392	917	973	2.34e-14	77.8
MS.gene68028.t1	MTR_3g064280	36.184	152	90	3	71	218	15	163	4.93e-23	105
MS.gene68028.t1	MTR_3g064270	35.526	152	91	3	71	218	15	163	7.19e-23	104
MS.gene68028.t1	MTR_3g064250	34.839	155	94	3	65	215	9	160	9.92e-23	104
MS.gene68028.t1	MTR_3g064300	42.857	112	61	2	65	174	7	117	2.94e-22	97.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68028.t1	AT2G18090	60.000	175	67	2	62	234	70	243	7.08e-72	249
MS.gene68028.t1	AT2G18090	40.777	103	47	3	336	433	458	551	1.21e-11	68.6
MS.gene68028.t1	AT2G18090	60.000	175	67	2	62	234	70	243	1.10e-71	249
MS.gene68028.t1	AT2G18090	55.769	52	23	0	336	387	458	509	2.46e-11	67.8
MS.gene68028.t1	AT3G51120	51.515	231	96	6	10	229	44	269	2.57e-67	241
MS.gene68028.t1	AT3G51120	47.436	78	38	1	324	398	716	793	2.95e-14	77.4
MS.gene68028.t1	AT2G16485	53.631	179	80	3	70	247	598	774	3.28e-57	212
MS.gene68028.t1	AT2G16485	50.909	55	27	0	334	388	1292	1346	1.77e-11	68.6
MS.gene68028.t1	AT2G16485	53.631	179	80	3	70	247	598	774	3.58e-57	211
MS.gene68028.t1	AT2G16485	50.909	55	27	0	334	388	1307	1361	1.76e-11	68.6

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Find 192 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGTCATTAGTGAAGA+AGG	0.484940	5.3:+12319472	None:intergenic
AAACGCGGTCGTCCGCCGAA+AGG	0.620370	5.3:-12323026	MS.gene68028:CDS
AAATAGTCCTATAAACAAGA+AGG	0.573367	5.3:-12321007	MS.gene68028:CDS
AAATGTGAAATTTCTTGTCA+TGG	0.555258	5.3:-12320280	MS.gene68028:CDS
AAATGTTTGGGACAGTGTCT+TGG	0.472814	5.3:-12320977	MS.gene68028:CDS
AACTGTGAACAACAGTCTTT+GGG	0.383075	5.3:-12320565	MS.gene68028:CDS
AACTTACGAGGTGGACCCCA+TGG	0.535838	5.3:+12319504	None:intergenic
AATAAAGAAAATAGTCAGGA+TGG	0.574172	5.3:-12320523	MS.gene68028:CDS
AATATCAGTGATGGGCAAAG+TGG	0.641070	5.3:-12320331	MS.gene68028:CDS
AATCTGTTAAGAGCAACGGA+GGG	0.752755	5.3:-12320393	MS.gene68028:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATGTGGATAAATGTCT+TGG	-	chr5.3:12320890-12320909	MS.gene68028:CDS	30.0%
ACTAAATTCATGCCTAATGA+AGG	+	chr5.3:12320485-12320504	None:intergenic	30.0%
ATAAATGTCTTGGATTATGC+AGG	-	chr5.3:12320900-12320919	MS.gene68028:CDS	30.0%
ATCTACTATACAGGAATTCT+CGG	+	chr5.3:12321620-12321639	None:intergenic	30.0%
ATGGAAATTGTTGAAGATCA+AGG	-	chr5.3:12320515-12320534	MS.gene68028:CDS	30.0%
ATTGGAAGTGAATGGAAATT+TGG	-	chr5.3:12322494-12322513	MS.gene68028:intron	30.0%
ATTTCCATTTCTCAGCTAAA+CGG	+	chr5.3:12319923-12319942	None:intergenic	30.0%
CAAAGATGTACTAATTTGGA+AGG	-	chr5.3:12320772-12320791	MS.gene68028:CDS	30.0%
CATAATCAGCAAACTATATC+TGG	-	chr5.3:12322900-12322919	MS.gene68028:intron	30.0%
CTAAATTCATGCCTAATGAA+GGG	+	chr5.3:12320484-12320503	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	12319482	12323189	12319482	ID=MS.gene68028
chr5.3	mRNA	12319482	12323189	12319482	ID=MS.gene68028.t1;Parent=MS.gene68028
chr5.3	exon	12322924	12323189	12322924	ID=MS.gene68028.t1.exon1;Parent=MS.gene68028.t1
chr5.3	CDS	12322924	12323189	12322924	ID=cds.MS.gene68028.t1;Parent=MS.gene68028.t1
chr5.3	exon	12322726	12322805	12322726	ID=MS.gene68028.t1.exon2;Parent=MS.gene68028.t1
chr5.3	CDS	12322726	12322805	12322726	ID=cds.MS.gene68028.t1;Parent=MS.gene68028.t1
chr5.3	exon	12321374	12321558	12321374	ID=MS.gene68028.t1.exon3;Parent=MS.gene68028.t1
chr5.3	CDS	12321374	12321558	12321374	ID=cds.MS.gene68028.t1;Parent=MS.gene68028.t1
chr5.3	exon	12319718	12321253	12319718	ID=MS.gene68028.t1.exon4;Parent=MS.gene68028.t1
chr5.3	CDS	12319718	12321253	12319718	ID=cds.MS.gene68028.t1;Parent=MS.gene68028.t1
chr5.3	exon	12319482	12319568	12319482	ID=MS.gene68028.t1.exon5;Parent=MS.gene68028.t1
chr5.3	CDS	12319482	12319568	12319482	ID=cds.MS.gene68028.t1;Parent=MS.gene68028.t1

Gene Sequence

>MS.gene68028

ATGGAACAAAATCACCACCCACCGATTCAGAAACCGGTAATTCCACCTCCAATTCCGGTCACCGGAGGTGAATTTACGGTTTCTGAACATACTCCGATGATCGGAGTCAACGCTACCGACGCTGACGTGGCGGTGAGTAAGAAACGCGGTCGTCCGCCGAAAGGTACTGTTCATGTTCATGCTCCGGTTGTGAAGAAGCCGAAGGATGAAGAAGATGTATGCTTCATTTGCTTTGATGGTGGTTCACTTGTTCTATGTGATCATCGGTTAGTTCAAAAAAAAAATCTAGTTTTTTTTTTATGTGAATTAAGATGTAATTGATTTTTTTTTTGTACGCCGATAAAATCGTTTATTTAATTATTAATGTTATTCTTTCTATTTTAGGGGTTGTCCTAAGGCGTATCATCCGGCGTGTGTTAAACGAGATGAAGAGTTTTTCCGTTTAGCTGAGAAATGGAAATGTGGTATGTTATTTTTGTGTTTATTGTGGTAATTGTTGACATGCAGAAATTAAATTGTTGTTTAATGCAGTGATTAAGATGTTTTAATTGAACTTAATTATGAGTTGGATAGTGTTTTCATGTTTGTTTTTGTTTGCTAAAATCTGATAAAGAATTCTTCTACTGATGATTAGAATTTGGGTTTTTCCGAAACGTCATTTAAAATAAGTTTTATTTTGTGCAAAGTGGATGAGATATGTTTTATCATTTGAATGAAATTTGATCTTTTTTTTTTTGTATGAAATGTGATCATTTTTTTTAAGAGCATGAAATGTGATTGTTTTTCTTTTATGGGTATGAAATCTGATCTTTTTTTTAACAGTTTGAAAAATCTGATTACTTACAAATGAATTTGAATTCTCTATATTTGAAAGTAAAATGGTTCGTGTCTTTGTTCTGGGGGCTGAACTGAACCGGCGAAATTGTTGCTGGTTGAGAAGATGGTCATTTCTGTGATTTTCATTTTGCTTGTGTATTTGATGTCTGGGGGGCTTGGTTTCCCTTCATTAGGCATGAATTTAGTGTCTTTGTTTATGGAAATTGTTGAAGATCAAGGAGTGGCGCTTGTAACTGGGGGAGTGGGGGCTGTATCCCTAATTCTCTCTCTTTCCTTGATCTATATGATATTGGTATGTTACTTCATGTTTGGTGAGGGTCCGGCCAAGTATTGGGAATTTGGGATCCTTGGGGGTACAAAAACAGGAATGAAAATGTAGGGTTCATTACACGTCCAGAATCACAAAAACGTGAATGAAAAATTAGGGTTGATGAATTGATTATACAATTGTGTCAAAGATGTACTAATTTGGAAGGAAAAAGATGAATGTGCAAGTGACATTAGATCCCTTGCATAGATCATGTTTTATACAATAGATTTCTCATGCATGGCTTATTTGTGTTTTTGCTTGAAACATGTGGATAAATGTCTTGGATTATGCAGGATCAATTCAATATTTATCAATGCTATTCATTTATTATCTCTTGTCGTAGTCTATCGCAATTATTACGTTTTCTAATTAGTGCACCTTCCCTATTTTTGACAAGCTGATCACTTCTTTTTGTTGTAGATTTTTATTTGAGTGTCTAATGGCATAACTAAGTTTTTTTTTTTTTTTTTTTTGCATTGCCTAGGTTGGCATCTATGTAGCGATTGTGGCAAATCGTGCCACTACATGTGCTATACCTGTCCATATTCCTTGTGCAAGGGATGTACAAAACAAGAGTCTGATTTTGTTAGTGTCAGAGCAAACAAAGGTTTGTGCGGAGCATGCTTGAGGACTATAATGCTGATCGAGAACAGTGCCCAAGGAATTAAGGTAATGGTCTGTTAAACTTTCTTATGAGTGCACATTTGTATTTTCCCCTCCCTCCCTTTATACATGAAAAGCTTAATGGTCTAATTTTTATTGTTTTATTTCCTTGTGCTATTTTTTTAGTGCGAAGTGGATTTTGATGATAGAAGCAGCTGGGAGTATCTTTTCAAGGTGTACTGGTTGTACTTGAAAGGAAAACTATCTCTAAATTTTGATGAGATCCTTCGAGCTAAAAATCCTTGGAAAGGTGCTGTTCGTGCGAGTTGCAAGGTTCAAACTCCCCGGAAGCGTCATCATCTTAAAGTTGACACTGGTTGTGGTTCCGAGAATTCCTGTATAGTAGATTCAAATAGTCCTATAAACAAGAAGGCTAAGGGAAATGTTTGGGACAGTGTCTTGGACGGTGTTGGAGGCAATGCACAAGAACTTTCCACTACCTGTGAGCTAAATGTGAATACATGTACAATAAAGAACGAAATGAATACTAATGAATCGGCAATCAATGATGGCACTGATGCAGGGGTTTCAAGACTAGGAGAGTCTGGTGTTGCAGAAGACATTTCATCGTTGCTTCACTCTACAGGGATGGAACAGCCAGTTTGGCATTATCAGGATCCAACTGGGAAGGTTCATGGTCCTTTTAGTATGTCGTTGCTGTGCAAGTTGAAAGGAACTGAATATTTCTCTCCAGATCTCAGAATATGGAGGGTAGATGAGAAACAAGAGAACTCTATATTGTTATCTGATGCACTGAGTCTGAAGTGTTCCCAAAATGTATCATTGCCGCTCAACTGTGAACAACAGTCTTTGGGAGCCAATGTTACATTGGAAAATAAAGAAAATAGTCAGGATGGTCTTAGCAATGCAACAAGGAGTGAAATTTGTGCTAACAACCAGATTGTCAAGCAGAGCGAGGAAGAAAAGGTGGGTGATACTTGTACCCCCCCTAATGGTACAGATGAATCTGTTAAGAGCAACGGAGGGTACACTCCGTCTCCTAGTGTGACTACACAAGCAGATGGGAATATCAGTGATGGGCAAAGTGGTTATTTTGAACGAAGGGAAGAGTCACCTAAATGTGAAATTTCTTGTCATGGTGGTCCCGACGTACACCTTGCACTACCTTCAACTGCCTTTGATGAGAATTTGAATGACAAACCTTCTGATGAAGTGGTGGAAGGTCATGGGAATGATAAAAAATTGGAAGTGAATGGAAATTTGGGTTCCAATGGGTCTTCTGAGGGTCCGAGTAATAGTGGGCAAAGTGATCAGAAACAATCCGACATTGAAGAGAATCCGGGGCAATCTTCTGGTCAGAACTGGATGATGGCAGCACTCTTTGGCGATGATTTCCTAGTTGATGATTCAGTTTCAAATCTTTTGGATGCAGTAGCGGCGGAGGAGAAACACAGTGTCACGGAACCTTCCGCCGAAGAGTGGGATATTGATGTGTTCACTGATGGTGCTATAACTGATTGTTTACAAGGTATAATACTACCAGATTTTGATGCAGGTAAAGGTGATGCTCTGAGCTCCTCAGGTGATTTACATTTACCCTCTCAATCCACTGTAGCAAATGAGCAACCGTTTCAGCAAGCAGATGTGCATAATCAGCAAACTATATCTGGGGAACAATCTTCAAAAACTCCTGAAGTTGAGGTGCGTAAAATGAATATAATTGTATGTAATCAATGGGAGTCTGAAAACCATCCCACCCGTTGGTCTTGTGTAAAATATATCTTAAAAATTTAGTTTAAATTTAGATTTGCTAGGCTTAAAGTAGAAACTAATCAATCAATTATGTGCAGGCTCCTTTCCCAGGTATTTGCTGGAACCAAACTCATCAATTTCCATGGGGTCCACCTCGTAAGTTGTTTCTCTACCTTCTTCACTAA

Protein sequence

>MS.gene68028.t1

MEQNHHPPIQKPVIPPPIPVTGGEFTVSEHTPMIGVNATDADVAVSKKRGRPPKGTVHVHAPVVKKPKDEEDVCFICFDGGSLVLCDHRGCPKAYHPACVKRDEEFFRLAEKWKCGWHLCSDCGKSCHYMCYTCPYSLCKGCTKQESDFVSVRANKGLCGACLRTIMLIENSAQGIKCEVDFDDRSSWEYLFKVYWLYLKGKLSLNFDEILRAKNPWKGAVRASCKVQTPRKRHHLKVDTGCGSENSCIVDSNSPINKKAKGNVWDSVLDGVGGNAQELSTTCELNVNTCTIKNEMNTNESAINDGTDAGVSRLGESGVAEDISSLLHSTGMEQPVWHYQDPTGKVHGPFSMSLLCKLKGTEYFSPDLRIWRVDEKQENSILLSDALSLKCSQNVSLPLNCEQQSLGANVTLENKENSQDGLSNATRSEICANNQIVKQSEEEKVGDTCTPPNGTDESVKSNGGYTPSPSVTTQADGNISDGQSGYFERREESPKCEISCHGGPDVHLALPSTAFDENLNDKPSDEVVEGHGNDKKLEVNGNLGSNGSSEGPSNSGQSDQKQSDIEENPGQSSGQNWMMAALFGDDFLVDDSVSNLLDAVAAEEKHSVTEPSAEEWDIDVFTDGAITDCLQGIILPDFDAGKGDALSSSGDLHLPSQSTVANEQPFQQADVHNQQTISGEQSSKTPEVEAPFPGICWNQTHQFPWGPPRKLFLYLLH