Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69355.t1 | XP_003603845.1 | 87.2 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 2.30E-215 | 758.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69355.t1 | P50134 | 57.9 | 413 | 173 | 1 | 11 | 423 | 19 | 430 | 4.4e-135 | 482.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69355.t1 | G7J5X8 | 87.2 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 1.6e-215 | 758.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene69355 | 0.819582 | 1.08E-52 | -1.69E-46 |
| MS.gene049549 | MS.gene69355 | 0.820812 | 5.63E-53 | -1.69E-46 |
| MS.gene050720 | MS.gene69355 | 0.808285 | 3.34E-50 | -1.69E-46 |
| MS.gene051439 | MS.gene69355 | 0.809053 | 2.29E-50 | -1.69E-46 |
| MS.gene051996 | MS.gene69355 | 0.803824 | 2.90E-49 | -1.69E-46 |
| MS.gene052223 | MS.gene69355 | 0.812298 | 4.55E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene69355 | 0.850756 | 1.38E-60 | -1.69E-46 |
| MS.gene052702 | MS.gene69355 | 0.802511 | 5.42E-49 | -1.69E-46 |
| MS.gene052705 | MS.gene69355 | 0.842416 | 2.62E-58 | -1.69E-46 |
| MS.gene052706 | MS.gene69355 | 0.810741 | 9.91E-51 | -1.69E-46 |
| MS.gene053406 | MS.gene69355 | 0.811781 | 5.90E-51 | -1.69E-46 |
| MS.gene054181 | MS.gene69355 | 0.800235 | 1.59E-48 | -1.69E-46 |
| MS.gene054277 | MS.gene69355 | 0.864837 | 9.12E-65 | -1.69E-46 |
| MS.gene054742 | MS.gene69355 | 0.875143 | 3.89E-68 | -1.69E-46 |
| MS.gene054884 | MS.gene69355 | 0.800802 | 1.21E-48 | -1.69E-46 |
| MS.gene055240 | MS.gene69355 | 0.820431 | 6.88E-53 | -1.69E-46 |
| MS.gene056218 | MS.gene69355 | 0.801481 | 8.82E-49 | -1.69E-46 |
| MS.gene056330 | MS.gene69355 | 0.829055 | 6.38E-55 | -1.69E-46 |
| MS.gene056590 | MS.gene69355 | 0.818332 | 2.07E-52 | -1.69E-46 |
| MS.gene056591 | MS.gene69355 | 0.819436 | 1.16E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene69355 | 0.819498 | 1.13E-52 | -1.69E-46 |
| MS.gene056920 | MS.gene69355 | 0.871793 | 5.21E-67 | -1.69E-46 |
| MS.gene056922 | MS.gene69355 | 0.819218 | 1.30E-52 | -1.69E-46 |
| MS.gene056923 | MS.gene69355 | 0.810066 | 1.39E-50 | -1.69E-46 |
| MS.gene057261 | MS.gene69355 | 0.808188 | 3.50E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene69355 | 0.819651 | 1.04E-52 | -1.69E-46 |
| MS.gene058603 | MS.gene69355 | 0.806811 | 6.86E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene69355 | 0.814699 | 1.35E-51 | -1.69E-46 |
| MS.gene059891 | MS.gene69355 | 0.809291 | 2.03E-50 | -1.69E-46 |
| MS.gene059953 | MS.gene69355 | 0.822555 | 2.22E-53 | -1.69E-46 |
| MS.gene059955 | MS.gene69355 | 0.831817 | 1.35E-55 | -1.69E-46 |
| MS.gene060087 | MS.gene69355 | 0.866012 | 3.89E-65 | -1.69E-46 |
| MS.gene061038 | MS.gene69355 | 0.805095 | 1.58E-49 | -1.69E-46 |
| MS.gene061094 | MS.gene69355 | 0.808413 | 3.13E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69355.t1 | MTR_3g114870 | 87.234 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 0.0 | 767 |
| MS.gene69355.t1 | MTR_3g114890 | 81.034 | 406 | 51 | 3 | 22 | 427 | 54 | 433 | 0.0 | 648 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 97 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGCAGCTTCATCAAATT+TGG | 0.134844 | 3.3:+93730551 | None:intergenic |
| TGGGCTTCAGGTTGGCAATT+TGG | 0.174820 | 3.3:+93731303 | None:intergenic |
| TTGGCTTGTGTTTCCAAATA+TGG | 0.194285 | 3.3:-93730172 | MS.gene69355:CDS |
| CATTTAGCGTCCTTGATTTA+AGG | 0.195088 | 3.3:-93731166 | MS.gene69355:CDS |
| AACTTCTTTAGCTGATAATA+TGG | 0.239934 | 3.3:+93730647 | None:intergenic |
| GTTGTATATGCACCCATATT+TGG | 0.244783 | 3.3:+93730159 | None:intergenic |
| CGGAGGAGGAGCTCACATTT+TGG | 0.255015 | 3.3:+93730843 | None:intergenic |
| GGGCTTCAGGTTGGCAATTT+GGG | 0.261179 | 3.3:+93731304 | None:intergenic |
| GACAAGGATCTTGTTGTTAT+TGG | 0.275664 | 3.3:-93730492 | MS.gene69355:CDS |
| AAAATGAAAATTCTTGATAT+TGG | 0.275753 | 3.3:-93730594 | MS.gene69355:CDS |
| GGAGCAAAACCCATTGAAAT+TGG | 0.277439 | 3.3:+93730125 | None:intergenic |
| TTACACTTAACAGCGTAAAA+AGG | 0.288780 | 3.3:+93731092 | None:intergenic |
| ATTGGTGGTGGATTCACTTC+TGG | 0.295664 | 3.3:-93730576 | MS.gene69355:CDS |
| CTTAAATCAAGGACGCTAAA+TGG | 0.304128 | 3.3:+93731167 | None:intergenic |
| GGTGCATATACAACTTCTTC+TGG | 0.309142 | 3.3:-93730150 | MS.gene69355:CDS |
| GCGGCTGGCGCAGTCGAAAT+TGG | 0.315367 | 3.3:+93731028 | None:intergenic |
| TGGATCAATGATGGAATTTA+CGG | 0.338014 | 3.3:-93730381 | MS.gene69355:CDS |
| ATTTAGCGTCCTTGATTTAA+GGG | 0.347065 | 3.3:-93731165 | MS.gene69355:CDS |
| GCATCTTTGAGTGTCAAATA+TGG | 0.350668 | 3.3:-93730789 | MS.gene69355:CDS |
| CAATCGTTCACCTCAAGTTC+AGG | 0.366769 | 3.3:+93730192 | None:intergenic |
| AATCCAAACATTTCACTTGT+AGG | 0.370462 | 3.3:-93731071 | MS.gene69355:CDS |
| TAACCACCTTTGACTCTGTT+GGG | 0.375313 | 3.3:-93730893 | MS.gene69355:CDS |
| TCTTCTGGAACCAATTTCAA+TGG | 0.383904 | 3.3:-93730135 | MS.gene69355:CDS |
| TCTTTGTATGTAACATTCTC+AGG | 0.402388 | 3.3:+93730291 | None:intergenic |
| ACATGCACCCCACTTAGGTT+TGG | 0.403271 | 3.3:-93730321 | MS.gene69355:CDS |
| GGATAAAACAGATTCAATTT+CGG | 0.407398 | 3.3:+93731004 | None:intergenic |
| ATCAGCAGCTTTGAGAAGCT+TGG | 0.407701 | 3.3:+93730746 | None:intergenic |
| AATTTGGGATAGGGATTCTT+CGG | 0.416647 | 3.3:+93731319 | None:intergenic |
| CTTGTTGTTATTGGTGAACC+TGG | 0.425304 | 3.3:-93730483 | MS.gene69355:CDS |
| AGATTCAATTTCGGTGCGGC+TGG | 0.435147 | 3.3:+93731013 | None:intergenic |
| GTGGCGGGACTTAAAGTAAC+TGG | 0.439278 | 3.3:-93730723 | MS.gene69355:CDS |
| CTTCTGGAACCAATTTCAAT+GGG | 0.439459 | 3.3:-93730134 | MS.gene69355:CDS |
| ATAATTTATTCTTGCCCGAC+AGG | 0.443813 | 3.3:+93730069 | None:intergenic |
| TCAGGTTGGCAATTTGGGAT+AGG | 0.448215 | 3.3:+93731309 | None:intergenic |
| CAGGTTGGCAATTTGGGATA+GGG | 0.452166 | 3.3:+93731310 | None:intergenic |
| GTGCCTACAAGTGAAATGTT+TGG | 0.453016 | 3.3:+93731068 | None:intergenic |
| TGGCTTGTGTTTCCAAATAT+GGG | 0.454466 | 3.3:-93730171 | MS.gene69355:CDS |
| TAATTGATCTTATGAACAAA+TGG | 0.458554 | 3.3:-93731139 | MS.gene69355:CDS |
| TCAGCAGCTTTGAGAAGCTT+GGG | 0.462319 | 3.3:+93730747 | None:intergenic |
| TTAACCACCTTTGACTCTGT+TGG | 0.464020 | 3.3:-93730894 | MS.gene69355:CDS |
| CTCTTTGAGAACCGTATCAA+TGG | 0.466778 | 3.3:+93730224 | None:intergenic |
| AAAATTCTTGATATTGGTGG+TGG | 0.474122 | 3.3:-93730588 | MS.gene69355:CDS |
| TACCTTCCTCCGTCTTAATA+CGG | 0.482251 | 3.3:+93730823 | None:intergenic |
| CGGCTCCTCCACTGCCTATG+TGG | 0.490949 | 3.3:+93730691 | None:intergenic |
| CTCAAAGCTGCTGATGTGGC+GGG | 0.492245 | 3.3:-93730738 | MS.gene69355:CDS |
| TTTGAAACAGCTACACGGCT+TGG | 0.493170 | 3.3:-93730624 | MS.gene69355:CDS |
| CACCTTTGACTCTGTTGGGG+AGG | 0.495065 | 3.3:-93730889 | MS.gene69355:CDS |
| AGAGAGTATTGGATCAATGA+TGG | 0.520184 | 3.3:-93730390 | MS.gene69355:CDS |
| ATGAAAATTCTTGATATTGG+TGG | 0.524512 | 3.3:-93730591 | MS.gene69355:CDS |
| ATTAAGACGGAGGAAGGTAG+TGG | 0.527699 | 3.3:-93730819 | MS.gene69355:CDS |
| TTTGGTGCTTCAGGAGTGAA+AGG | 0.530590 | 3.3:-93731278 | MS.gene69355:CDS |
| AACTTGTGATGCCATTGATA+CGG | 0.532310 | 3.3:-93730235 | MS.gene69355:CDS |
| TTCTGTCGGGTGAAACGCCA+AGG | 0.534531 | 3.3:+93730982 | None:intergenic |
| TTGCATGTTCAAGTCCTGTC+GGG | 0.538581 | 3.3:-93730083 | MS.gene69355:CDS |
| TCACCTCAAGTTCAGGTAGC+AGG | 0.539377 | 3.3:+93730199 | None:intergenic |
| CAATTATAACCCTTAAATCA+AGG | 0.543347 | 3.3:+93731156 | None:intergenic |
| AGTTACAAATTTGTCATCAG+AGG | 0.545344 | 3.3:-93731249 | MS.gene69355:CDS |
| GCTTCTCAAAGCTGCTGATG+TGG | 0.545870 | 3.3:-93730742 | MS.gene69355:CDS |
| TTCTCACATGCACCCCACTT+AGG | 0.546355 | 3.3:-93730326 | MS.gene69355:CDS |
| TAACTCTGATTTACACGGGT+TGG | 0.547050 | 3.3:+93730950 | None:intergenic |
| CTCCGTATTAAGACGGAGGA+AGG | 0.550571 | 3.3:-93730825 | MS.gene69355:CDS |
| CTTGCATGTTCAAGTCCTGT+CGG | 0.550768 | 3.3:-93730084 | MS.gene69355:CDS |
| GTAGGCACATTAGCTTCACT+TGG | 0.550820 | 3.3:-93731053 | MS.gene69355:CDS |
| TCTCAAAGCTGCTGATGTGG+CGG | 0.552805 | 3.3:-93730739 | MS.gene69355:CDS |
| ATGTGTAACTCTGATTTACA+CGG | 0.553353 | 3.3:+93730945 | None:intergenic |
| ATTAAATATGCTGCAAGTGT+CGG | 0.554694 | 3.3:-93730924 | MS.gene69355:CDS |
| AACCACCTTTGACTCTGTTG+GGG | 0.557898 | 3.3:-93730892 | MS.gene69355:CDS |
| GTTTCCGAAAAGTAACGGCC+AGG | 0.558733 | 3.3:+93730465 | None:intergenic |
| TCCTAAAACTTACCCATCAA+CGG | 0.560643 | 3.3:-93730268 | MS.gene69355:CDS |
| AACCTCCCCAACAGAGTCAA+AGG | 0.562889 | 3.3:+93730887 | None:intergenic |
| CTGAACTTGAGGTGAACGAT+TGG | 0.567508 | 3.3:-93730191 | MS.gene69355:CDS |
| AGGTTGAAAAGATAAAGAAA+TGG | 0.568856 | 3.3:-93730869 | MS.gene69355:CDS |
| TTGGCATAGATGATTCTGTC+GGG | 0.569299 | 3.3:+93730969 | None:intergenic |
| GATTCTTCGGCTACTAGTGT+AGG | 0.578341 | 3.3:+93731332 | None:intergenic |
| CCTCCGTCTTAATACGGAGG+AGG | 0.581352 | 3.3:+93730829 | None:intergenic |
| GGGATGAGCTGAGAGAGTAT+TGG | 0.583313 | 3.3:-93730401 | MS.gene69355:CDS |
| TGTGTAACTCTGATTTACAC+GGG | 0.588484 | 3.3:+93730946 | None:intergenic |
| AATTATTGGAAAACGTGTGA+GGG | 0.589559 | 3.3:-93730421 | MS.gene69355:CDS |
| GTACCTGCTACCTGAACTTG+AGG | 0.601377 | 3.3:-93730202 | MS.gene69355:CDS |
| AAATTATTGGAAAACGTGTG+AGG | 0.602326 | 3.3:-93730422 | MS.gene69355:CDS |
| CGACAGGACTTGAACATGCA+AGG | 0.611121 | 3.3:+93730085 | None:intergenic |
| AACTCATTTCGGAAATGACA+AGG | 0.614579 | 3.3:-93730508 | MS.gene69355:CDS |
| GTATCGTTCCACATAGGCAG+TGG | 0.616728 | 3.3:-93730699 | MS.gene69355:CDS |
| ATGTCGTTTCCGAAAAGTAA+CGG | 0.625854 | 3.3:+93730460 | None:intergenic |
| GTATCAATGGCATCACAAGT+TGG | 0.627608 | 3.3:+93730237 | None:intergenic |
| TCGTTCCACATAGGCAGTGG+AGG | 0.632211 | 3.3:-93730696 | MS.gene69355:CDS |
| GCTCCTCCTCCGTATTAAGA+CGG | 0.645011 | 3.3:-93730832 | MS.gene69355:CDS |
| GTTGGCATAGATGATTCTGT+CGG | 0.646092 | 3.3:+93730968 | None:intergenic |
| AAGGTAAATGTCCTTAGCTG+TGG | 0.650676 | 3.3:+93730104 | None:intergenic |
| GCCGATGCAAAAGCTTACCA+CGG | 0.668156 | 3.3:-93730672 | MS.gene69355:CDS |
| TCTGTCGGGTGAAACGCCAA+GGG | 0.670155 | 3.3:+93730983 | None:intergenic |
| ACTGGCGTATCGTTCCACAT+AGG | 0.686836 | 3.3:-93730705 | MS.gene69355:CDS |
| CCTCCTCCGTATTAAGACGG+AGG | 0.688874 | 3.3:-93730829 | MS.gene69355:CDS |
| AAACAGATTCAATTTCGGTG+CGG | 0.697986 | 3.3:+93731009 | None:intergenic |
| CTTCCTCCGTCTTAATACGG+AGG | 0.698108 | 3.3:+93730826 | None:intergenic |
| CTCCCCAACAGAGTCAAAGG+TGG | 0.708675 | 3.3:+93730890 | None:intergenic |
| TAGCTGATAATATGGCTCCG+TGG | 0.725730 | 3.3:+93730655 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAAATTCTTGATAT+TGG | - | chr3.3:93730815-93730834 | MS.gene69355:CDS | 15.0% |
| !!! | ATATCAAGAATTTTCATTTT+TGG | + | chr3.3:93730815-93730834 | None:intergenic | 15.0% |
| !! | ACATTAGCAACAAAAATTAT+TGG | - | chr3.3:93730974-93730993 | MS.gene69355:CDS | 20.0% |
| !! | TAATTGATCTTATGAACAAA+TGG | - | chr3.3:93730270-93730289 | MS.gene69355:CDS | 20.0% |
| ! | AACTTCTTTAGCTGATAATA+TGG | + | chr3.3:93730765-93730784 | None:intergenic | 25.0% |
| ! | AGGTTGAAAAGATAAAGAAA+TGG | - | chr3.3:93730540-93730559 | MS.gene69355:CDS | 25.0% |
| ! | ATGAAAATTCTTGATATTGG+TGG | - | chr3.3:93730818-93730837 | MS.gene69355:CDS | 25.0% |
| ! | CAATTATAACCCTTAAATCA+AGG | + | chr3.3:93730256-93730275 | None:intergenic | 25.0% |
| ! | GATGCAATAAAAACTCATTT+CGG | - | chr3.3:93730890-93730909 | MS.gene69355:CDS | 25.0% |
| ! | GGATAAAACAGATTCAATTT+CGG | + | chr3.3:93730408-93730427 | None:intergenic | 25.0% |
| !!! | AGCTGGTTTGTTTTTAATAA+CGG | + | chr3.3:93730210-93730229 | None:intergenic | 25.0% |
| AAAATTCTTGATATTGGTGG+TGG | - | chr3.3:93730821-93730840 | MS.gene69355:CDS | 30.0% | |
| AAATTATTGGAAAACGTGTG+AGG | - | chr3.3:93730987-93731006 | MS.gene69355:CDS | 30.0% | |
| AATCCAAACATTTCACTTGT+AGG | - | chr3.3:93730338-93730357 | MS.gene69355:CDS | 30.0% | |
| AATTATTGGAAAACGTGTGA+GGG | - | chr3.3:93730988-93731007 | MS.gene69355:CDS | 30.0% | |
| AGTTACAAATTTGTCATCAG+AGG | - | chr3.3:93730160-93730179 | MS.gene69355:CDS | 30.0% | |
| ATGTGTAACTCTGATTTACA+CGG | + | chr3.3:93730467-93730486 | None:intergenic | 30.0% | |
| ATTAAATATGCTGCAAGTGT+CGG | - | chr3.3:93730485-93730504 | MS.gene69355:CDS | 30.0% | |
| ATTTAGCGTCCTTGATTTAA+GGG | - | chr3.3:93730244-93730263 | MS.gene69355:CDS | 30.0% | |
| TCTTTGTATGTAACATTCTC+AGG | + | chr3.3:93731121-93731140 | None:intergenic | 30.0% | |
| TTACACTTAACAGCGTAAAA+AGG | + | chr3.3:93730320-93730339 | None:intergenic | 30.0% | |
| ! | ATTGAATCTGTTTTATCCCT+TGG | - | chr3.3:93730410-93730429 | MS.gene69355:CDS | 30.0% |
| ! | CTTAACAGTTGGAAGTTTTA+TGG | + | chr3.3:93730297-93730316 | None:intergenic | 30.0% |
| ! | TGGATCAATGATGGAATTTA+CGG | - | chr3.3:93731028-93731047 | MS.gene69355:CDS | 30.0% |
| !!! | AAGTTTTTGAAACAGCTACA+CGG | - | chr3.3:93730780-93730799 | MS.gene69355:CDS | 30.0% |
| AAACAGATTCAATTTCGGTG+CGG | + | chr3.3:93730403-93730422 | None:intergenic | 35.0% | |
| AACTCATTTCGGAAATGACA+AGG | - | chr3.3:93730901-93730920 | MS.gene69355:CDS | 35.0% | |
| AACTTGTGATGCCATTGATA+CGG | - | chr3.3:93731174-93731193 | MS.gene69355:CDS | 35.0% | |
| CAATGCAGCTTCATCAAATT+TGG | + | chr3.3:93730861-93730880 | None:intergenic | 35.0% | |
| CATTTAGCGTCCTTGATTTA+AGG | - | chr3.3:93730243-93730262 | MS.gene69355:CDS | 35.0% | |
| CTTAAATCAAGGACGCTAAA+TGG | + | chr3.3:93730245-93730264 | None:intergenic | 35.0% | |
| GCATCTTTGAGTGTCAAATA+TGG | - | chr3.3:93730620-93730639 | MS.gene69355:CDS | 35.0% | |
| GTTGTATATGCACCCATATT+TGG | + | chr3.3:93731253-93731272 | None:intergenic | 35.0% | |
| TCCTAAAACTTACCCATCAA+CGG | - | chr3.3:93731141-93731160 | MS.gene69355:CDS | 35.0% | |
| TGTGTAACTCTGATTTACAC+GGG | + | chr3.3:93730466-93730485 | None:intergenic | 35.0% | |
| ! | AATTTGGGATAGGGATTCTT+CGG | + | chr3.3:93730093-93730112 | None:intergenic | 35.0% |
| ! | ATGTCGTTTCCGAAAAGTAA+CGG | + | chr3.3:93730952-93730971 | None:intergenic | 35.0% |
| ! | TGGCTTGTGTTTCCAAATAT+GGG | - | chr3.3:93731238-93731257 | MS.gene69355:CDS | 35.0% |
| ! | TTTTGAACCAAACCTAAGTG+GGG | + | chr3.3:93731098-93731117 | None:intergenic | 35.0% |
| !! | AGAGAGTATTGGATCAATGA+TGG | - | chr3.3:93731019-93731038 | MS.gene69355:CDS | 35.0% |
| !! | CTTCTGGAACCAATTTCAAT+GGG | - | chr3.3:93731275-93731294 | MS.gene69355:CDS | 35.0% |
| !! | GACAAGGATCTTGTTGTTAT+TGG | - | chr3.3:93730917-93730936 | MS.gene69355:CDS | 35.0% |
| !! | GTTTTGAACCAAACCTAAGT+GGG | + | chr3.3:93731099-93731118 | None:intergenic | 35.0% |
| !! | TCTTCTGGAACCAATTTCAA+TGG | - | chr3.3:93731274-93731293 | MS.gene69355:CDS | 35.0% |
| !! | TTGGCTTGTGTTTCCAAATA+TGG | - | chr3.3:93731237-93731256 | MS.gene69355:CDS | 35.0% |
| AAGGTAAATGTCCTTAGCTG+TGG | + | chr3.3:93731308-93731327 | None:intergenic | 40.0% | |
| GCGTAAAAAGGCTTAACAGT+TGG | + | chr3.3:93730308-93730327 | None:intergenic | 40.0% | |
| GGAGCAAAACCCATTGAAAT+TGG | + | chr3.3:93731287-93731306 | None:intergenic | 40.0% | |
| GGTGCATATACAACTTCTTC+TGG | - | chr3.3:93731259-93731278 | MS.gene69355:CDS | 40.0% | |
| GTATCAATGGCATCACAAGT+TGG | + | chr3.3:93731175-93731194 | None:intergenic | 40.0% | |
| GTGCCTACAAGTGAAATGTT+TGG | + | chr3.3:93730344-93730363 | None:intergenic | 40.0% | |
| GTTGGCATAGATGATTCTGT+CGG | + | chr3.3:93730444-93730463 | None:intergenic | 40.0% | |
| TAACCACCTTTGACTCTGTT+GGG | - | chr3.3:93730516-93730535 | MS.gene69355:CDS | 40.0% | |
| TAACTCTGATTTACACGGGT+TGG | + | chr3.3:93730462-93730481 | None:intergenic | 40.0% | |
| TACCTTCCTCCGTCTTAATA+CGG | + | chr3.3:93730589-93730608 | None:intergenic | 40.0% | |
| TTAACCACCTTTGACTCTGT+TGG | - | chr3.3:93730515-93730534 | MS.gene69355:CDS | 40.0% | |
| TTGGCATAGATGATTCTGTC+GGG | + | chr3.3:93730443-93730462 | None:intergenic | 40.0% | |
| TTGGTCCAAAAACCGTTGAT+GGG | + | chr3.3:93731156-93731175 | None:intergenic | 40.0% | |
| ! | ACTCCTGAAGCACCAAAAAT+GGG | + | chr3.3:93730128-93730147 | None:intergenic | 40.0% |
| ! | ACTTACCCATCAACGGTTTT+TGG | - | chr3.3:93731148-93731167 | MS.gene69355:CDS | 40.0% |
| ! | CTCTTTGAGAACCGTATCAA+TGG | + | chr3.3:93731188-93731207 | None:intergenic | 40.0% |
| !! | AATGGTGAGTCATTTTCAGC+TGG | + | chr3.3:93730227-93730246 | None:intergenic | 40.0% |
| !! | ACCGTTGATGGGTAAGTTTT+AGG | + | chr3.3:93731145-93731164 | None:intergenic | 40.0% |
| !! | CTTGTTGTTATTGGTGAACC+TGG | - | chr3.3:93730926-93730945 | MS.gene69355:CDS | 40.0% |
| !!! | GGTTTTGAACCAAACCTAAG+TGG | + | chr3.3:93731100-93731119 | None:intergenic | 40.0% |
| AACCACCTTTGACTCTGTTG+GGG | - | chr3.3:93730517-93730536 | MS.gene69355:CDS | 45.0% | |
| ATTAAGACGGAGGAAGGTAG+TGG | - | chr3.3:93730590-93730609 | MS.gene69355:CDS | 45.0% | |
| CAATCGTTCACCTCAAGTTC+AGG | + | chr3.3:93731220-93731239 | None:intergenic | 45.0% | |
| CTGAACTTGAGGTGAACGAT+TGG | - | chr3.3:93731218-93731237 | MS.gene69355:CDS | 45.0% | |
| CTTGCATGTTCAAGTCCTGT+CGG | - | chr3.3:93731325-93731344 | MS.gene69355:CDS | 45.0% | |
| GATTCTTCGGCTACTAGTGT+AGG | + | chr3.3:93730080-93730099 | None:intergenic | 45.0% | |
| GTTGGTCCAAAAACCGTTGA+TGG | + | chr3.3:93731157-93731176 | None:intergenic | 45.0% | |
| TAGCTGATAATATGGCTCCG+TGG | + | chr3.3:93730757-93730776 | None:intergenic | 45.0% | |
| TTGCATGTTCAAGTCCTGTC+GGG | - | chr3.3:93731326-93731345 | MS.gene69355:CDS | 45.0% | |
| ! | AAGCACCAAAAATGGGCTTC+AGG | + | chr3.3:93730121-93730140 | None:intergenic | 45.0% |
| ! | ACCAAAAATGGGCTTCAGGT+TGG | + | chr3.3:93730117-93730136 | None:intergenic | 45.0% |
| ! | CACTCCTGAAGCACCAAAAA+TGG | + | chr3.3:93730129-93730148 | None:intergenic | 45.0% |
| ! | CAGGTTGGCAATTTGGGATA+GGG | + | chr3.3:93730102-93730121 | None:intergenic | 45.0% |
| ! | GTAGGCACATTAGCTTCACT+TGG | - | chr3.3:93730356-93730375 | MS.gene69355:CDS | 45.0% |
| ! | TCCGTGGTAAGCTTTTGCAT+CGG | + | chr3.3:93730741-93730760 | None:intergenic | 45.0% |
| ! | TTTGAAACAGCTACACGGCT+TGG | - | chr3.3:93730785-93730804 | MS.gene69355:CDS | 45.0% |
| !! | ATCAGCAGCTTTGAGAAGCT+TGG | + | chr3.3:93730666-93730685 | None:intergenic | 45.0% |
| !! | ATTGGTGGTGGATTCACTTC+TGG | - | chr3.3:93730833-93730852 | MS.gene69355:CDS | 45.0% |
| !! | TCAGCAGCTTTGAGAAGCTT+GGG | + | chr3.3:93730665-93730684 | None:intergenic | 45.0% |
| !! | TCAGGTTGGCAATTTGGGAT+AGG | + | chr3.3:93730103-93730122 | None:intergenic | 45.0% |
| !! | TTTGGTGCTTCAGGAGTGAA+AGG | - | chr3.3:93730131-93730150 | MS.gene69355:CDS | 45.0% |
| !!! | AAGCCCATTTTTGGTGCTTC+AGG | - | chr3.3:93730122-93730141 | MS.gene69355:CDS | 45.0% |
| !!! | TGAACCTGGCCGTTACTTTT+CGG | - | chr3.3:93730940-93730959 | MS.gene69355:CDS | 45.0% |
| AACCTCCCCAACAGAGTCAA+AGG | + | chr3.3:93730525-93730544 | None:intergenic | 50.0% | |
| ACATGCACCCCACTTAGGTT+TGG | - | chr3.3:93731088-93731107 | MS.gene69355:CDS | 50.0% | |
| ACTGGCGTATCGTTCCACAT+AGG | - | chr3.3:93730704-93730723 | MS.gene69355:CDS | 50.0% | |
| CGACAGGACTTGAACATGCA+AGG | + | chr3.3:93731327-93731346 | None:intergenic | 50.0% | |
| CTCCGTATTAAGACGGAGGA+AGG | - | chr3.3:93730584-93730603 | MS.gene69355:CDS | 50.0% | |
| CTTCCTCCGTCTTAATACGG+AGG | + | chr3.3:93730586-93730605 | None:intergenic | 50.0% | |
| GCCGATGCAAAAGCTTACCA+CGG | - | chr3.3:93730737-93730756 | MS.gene69355:CDS | 50.0% | |
| GCTCCTCCTCCGTATTAAGA+CGG | - | chr3.3:93730577-93730596 | MS.gene69355:CDS | 50.0% | |
| GCTTCTCAAAGCTGCTGATG+TGG | - | chr3.3:93730667-93730686 | MS.gene69355:CDS | 50.0% | |
| GTACCTGCTACCTGAACTTG+AGG | - | chr3.3:93731207-93731226 | MS.gene69355:CDS | 50.0% | |
| GTATCGTTCCACATAGGCAG+TGG | - | chr3.3:93730710-93730729 | MS.gene69355:CDS | 50.0% | |
| GTTTCCGAAAAGTAACGGCC+AGG | + | chr3.3:93730947-93730966 | None:intergenic | 50.0% | |
| TCACCTCAAGTTCAGGTAGC+AGG | + | chr3.3:93731213-93731232 | None:intergenic | 50.0% | |
| TCTCAAAGCTGCTGATGTGG+CGG | - | chr3.3:93730670-93730689 | MS.gene69355:CDS | 50.0% | |
| TTCTCACATGCACCCCACTT+AGG | - | chr3.3:93731083-93731102 | MS.gene69355:CDS | 50.0% | |
| ! | AGATTCAATTTCGGTGCGGC+TGG | + | chr3.3:93730399-93730418 | None:intergenic | 50.0% |
| ! | GCCAACCTGAAGCCCATTTT+TGG | - | chr3.3:93730113-93730132 | MS.gene69355:CDS | 50.0% |
| ! | GGGATGAGCTGAGAGAGTAT+TGG | - | chr3.3:93731008-93731027 | MS.gene69355:CDS | 50.0% |
| ! | GTGGCGGGACTTAAAGTAAC+TGG | - | chr3.3:93730686-93730705 | MS.gene69355:CDS | 50.0% |
| ! | TGGGTTTTGCTCCACAGCTA+AGG | - | chr3.3:93731294-93731313 | MS.gene69355:CDS | 50.0% |
| !! | GGGCTTCAGGTTGGCAATTT+GGG | + | chr3.3:93730108-93730127 | None:intergenic | 50.0% |
| !! | TGGGCTTCAGGTTGGCAATT+TGG | + | chr3.3:93730109-93730128 | None:intergenic | 50.0% |
| CACCTTTGACTCTGTTGGGG+AGG | - | chr3.3:93730520-93730539 | MS.gene69355:CDS | 55.0% | |
| CCTCCGTCTTAATACGGAGG+AGG | + | chr3.3:93730583-93730602 | None:intergenic | 55.0% | |
| CCTCCTCCGTATTAAGACGG+AGG | - | chr3.3:93730580-93730599 | MS.gene69355:CDS | 55.0% | |
| CTCAAAGCTGCTGATGTGGC+GGG | - | chr3.3:93730671-93730690 | MS.gene69355:CDS | 55.0% | |
| CTCCCCAACAGAGTCAAAGG+TGG | + | chr3.3:93730522-93730541 | None:intergenic | 55.0% | |
| TCGTTCCACATAGGCAGTGG+AGG | - | chr3.3:93730713-93730732 | MS.gene69355:CDS | 55.0% | |
| TCTGTCGGGTGAAACGCCAA+GGG | + | chr3.3:93730429-93730448 | None:intergenic | 55.0% | |
| TTCTGTCGGGTGAAACGCCA+AGG | + | chr3.3:93730430-93730449 | None:intergenic | 55.0% | |
| ! | CGGAGGAGGAGCTCACATTT+TGG | + | chr3.3:93730569-93730588 | None:intergenic | 55.0% |
| CGGCTCCTCCACTGCCTATG+TGG | + | chr3.3:93730721-93730740 | None:intergenic | 65.0% | |
| GCGGCTGGCGCAGTCGAAAT+TGG | + | chr3.3:93730384-93730403 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 93730074 | 93731357 | 93730074 | ID=MS.gene69355 |
| chr3.3 | mRNA | 93730074 | 93731357 | 93730074 | ID=MS.gene69355.t1;Parent=MS.gene69355 |
| chr3.3 | exon | 93730074 | 93731357 | 93730074 | ID=MS.gene69355.t1.exon1;Parent=MS.gene69355.t1 |
| chr3.3 | CDS | 93730074 | 93731357 | 93730074 | ID=cds.MS.gene69355.t1;Parent=MS.gene69355.t1 |
| Gene Sequence |
| Protein sequence |
