Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69388.t1 | XP_003603775.1 | 90.4 | 323 | 21 | 3 | 1 | 314 | 1 | 322 | 1.50E-160 | 575.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69388.t1 | Q7ZUC7 | 43.5 | 301 | 121 | 8 | 59 | 310 | 77 | 377 | 1.9e-58 | 227.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69388.t1 | G7J598 | 90.4 | 323 | 21 | 3 | 1 | 314 | 1 | 322 | 1.1e-160 | 575.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene69388 | 0.808194 | 3.49E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene69388 | 0.822241 | 2.63E-53 | -1.69E-46 |
| MS.gene049873 | MS.gene69388 | 0.810714 | 1.00E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene69388 | 0.838206 | 3.30E-57 | -1.69E-46 |
| MS.gene050303 | MS.gene69388 | 0.827178 | 1.81E-54 | -1.69E-46 |
| MS.gene051633 | MS.gene69388 | 0.805549 | 1.27E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene69388 | 0.81083 | 9.48E-51 | -1.69E-46 |
| MS.gene051748 | MS.gene69388 | 0.810536 | 1.10E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene69388 | 0.808953 | 2.40E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene69388 | 0.82215 | 2.76E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene69388 | 0.824836 | 6.50E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene69388 | 0.808777 | 2.62E-50 | -1.69E-46 |
| MS.gene053294 | MS.gene69388 | 0.828146 | 1.06E-54 | -1.69E-46 |
| MS.gene05548 | MS.gene69388 | 0.822514 | 2.27E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene69388 | 0.863089 | 3.19E-64 | -1.69E-46 |
| MS.gene056091 | MS.gene69388 | 0.864486 | 1.17E-64 | -1.69E-46 |
| MS.gene056403 | MS.gene69388 | 0.834662 | 2.63E-56 | -1.69E-46 |
| MS.gene056605 | MS.gene69388 | 0.85063 | 1.50E-60 | -1.69E-46 |
| MS.gene056631 | MS.gene69388 | 0.832684 | 8.21E-56 | -1.69E-46 |
| MS.gene05689 | MS.gene69388 | 0.805101 | 1.57E-49 | -1.69E-46 |
| MS.gene057079 | MS.gene69388 | 0.836434 | 9.38E-57 | -1.69E-46 |
| MS.gene057555 | MS.gene69388 | 0.810164 | 1.32E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene69388 | 0.803992 | 2.67E-49 | -1.69E-46 |
| MS.gene05795 | MS.gene69388 | 0.80129 | 9.65E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene69388 | 0.801138 | 1.04E-48 | -1.69E-46 |
| MS.gene058238 | MS.gene69388 | 0.80946 | 1.87E-50 | -1.69E-46 |
| MS.gene059317 | MS.gene69388 | 0.812213 | 4.75E-51 | -1.69E-46 |
| MS.gene05953 | MS.gene69388 | 0.828766 | 7.49E-55 | -1.69E-46 |
| MS.gene05954 | MS.gene69388 | 0.828051 | 1.11E-54 | -1.69E-46 |
| MS.gene059830 | MS.gene69388 | 0.834426 | 3.02E-56 | -1.69E-46 |
| MS.gene059935 | MS.gene69388 | 0.824961 | 6.08E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene69388 | 0.829104 | 6.20E-55 | -1.69E-46 |
| MS.gene060586 | MS.gene69388 | 0.835981 | 1.22E-56 | -1.69E-46 |
| MS.gene060830 | MS.gene69388 | 0.845306 | 4.41E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69388.t1 | MTR_3g114070 | 90.402 | 323 | 21 | 3 | 1 | 314 | 1 | 322 | 0.0 | 596 |
| MS.gene69388.t1 | MTR_6g069420 | 65.637 | 259 | 83 | 1 | 62 | 314 | 67 | 325 | 1.15e-122 | 355 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69388.t1 | AT5G42150 | 70.238 | 252 | 73 | 2 | 62 | 312 | 63 | 313 | 3.48e-129 | 371 |
Find 75 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTACTTATGCACTCATTC+TGG | 0.244607 | 3.3:-93355302 | None:intergenic |
| TTAGCAGATCTTGCTGTCTT+TGG | 0.282368 | 3.3:+93355175 | MS.gene69388:CDS |
| CTCACTCTGTCATCGGATTT+AGG | 0.282816 | 3.3:+93352504 | MS.gene69388:CDS |
| ACAGCAAGATCTGCTAAATT+AGG | 0.304403 | 3.3:-93355169 | None:intergenic |
| GAACAATTGGTTGATTCTTC+AGG | 0.311379 | 3.3:+93352890 | MS.gene69388:CDS |
| CGCAGTGGAGTTGGCTCTTA+AGG | 0.323747 | 3.3:-93352393 | None:intergenic |
| TGAACAAGAAAGAGATTAAT+TGG | 0.326433 | 3.3:+93352828 | MS.gene69388:CDS |
| GGGTTAGTTGAAGTCAAATA+TGG | 0.327626 | 3.3:-93352449 | None:intergenic |
| TTGAAGGGCCGAAAATTTCT+TGG | 0.349657 | 3.3:+93355021 | MS.gene69388:CDS |
| GTTCTGATCCTCTTGCTTTG+AGG | 0.358054 | 3.3:-93352571 | None:intergenic |
| GTCATCGGATTTAGGTATTA+CGG | 0.369439 | 3.3:+93352512 | MS.gene69388:CDS |
| AAAACAGTTCGATATATGTT+TGG | 0.371801 | 3.3:-93353592 | None:intergenic |
| GAGAGGTTAGTGGCTAAGTA+TGG | 0.381448 | 3.3:+93354892 | MS.gene69388:CDS |
| ACCTTTAACCTTGTTGCAAA+AGG | 0.384952 | 3.3:-93352645 | None:intergenic |
| AGCACACAAGGATTGGGAAT+TGG | 0.394438 | 3.3:+93355245 | MS.gene69388:CDS |
| CACTGTTGATGGTGAACAAT+TGG | 0.398212 | 3.3:+93352877 | MS.gene69388:CDS |
| GTTAGACATAATTGATAAGT+TGG | 0.398968 | 3.3:+93353005 | MS.gene69388:intron |
| TCTGCATTCAAGTCATAATC+TGG | 0.405560 | 3.3:-93353042 | None:intergenic |
| CCTCAAGTCAGGTCAAGATA+TGG | 0.432018 | 3.3:+93355219 | MS.gene69388:CDS |
| ATGGTAGAGCACACAAGGAT+TGG | 0.432114 | 3.3:+93355238 | MS.gene69388:CDS |
| CCCATTCGCCACCTCAAGTC+AGG | 0.439804 | 3.3:+93355208 | MS.gene69388:CDS |
| TTAATCTCTTTCTTGTTCAT+CGG | 0.452851 | 3.3:-93352824 | None:intergenic |
| ACAGTGGGTTGAAGCTTTGA+AGG | 0.454177 | 3.3:+93355005 | MS.gene69388:CDS |
| TGGTAGAGCACACAAGGATT+GGG | 0.466759 | 3.3:+93355239 | MS.gene69388:CDS |
| GTGCCTATTGTCACTGTTGA+TGG | 0.471196 | 3.3:+93352866 | MS.gene69388:CDS |
| CAGTTTATATGAGAGGTTAG+TGG | 0.472448 | 3.3:+93354882 | MS.gene69388:CDS |
| TTCGATTATATCACTACTAA+AGG | 0.473403 | 3.3:+93353631 | MS.gene69388:CDS |
| ACCTGACTTGAGGTGGCGAA+TGG | 0.476175 | 3.3:-93355209 | None:intergenic |
| TCACCATCAACAGTGACAAT+AGG | 0.477717 | 3.3:-93352869 | None:intergenic |
| TGCCGCCACTGCCACATCTC+CGG | 0.480271 | 3.3:+93352538 | MS.gene69388:CDS |
| GGAGTTGGCTCTTAAGGCTC+TGG | 0.486808 | 3.3:-93352387 | None:intergenic |
| GGTGGAAGCCGCAGTGGAGT+TGG | 0.487473 | 3.3:-93352402 | None:intergenic |
| GATGAGCGTGAGGCTTTGTA+TGG | 0.488987 | 3.3:+93354973 | MS.gene69388:CDS |
| CCTTTAACCTTGTTGCAAAA+GGG | 0.489446 | 3.3:-93352644 | None:intergenic |
| TGCTCGAGGCGGTCGGAGGA+AGG | 0.495234 | 3.3:-93352423 | None:intergenic |
| CGCCGGAGATGTGGCAGTGG+CGG | 0.501678 | 3.3:-93352540 | None:intergenic |
| CCAGCGTTTCTAGATTATCA+TGG | 0.503632 | 3.3:+93352773 | MS.gene69388:intron |
| TAATTGATAAGTTGGTCAAA+AGG | 0.506338 | 3.3:+93353013 | MS.gene69388:CDS |
| CCTGACTTGAGGTGGCGAAT+GGG | 0.516805 | 3.3:-93355208 | None:intergenic |
| TCTGAGATGGAAAATGCAGT+TGG | 0.518885 | 3.3:+93355271 | MS.gene69388:CDS |
| GATGGAAAATGCAGTTGGAC+AGG | 0.523361 | 3.3:+93355276 | MS.gene69388:CDS |
| GCTTTGAGGTCTTGTTGCGC+CGG | 0.525634 | 3.3:-93352557 | None:intergenic |
| GGCTCTTAAGGCTCTGGCAA+TGG | 0.525688 | 3.3:-93352381 | None:intergenic |
| GTATGGAGCTGCTGAACAGT+GGG | 0.539220 | 3.3:+93354990 | MS.gene69388:CDS |
| CAATCAACTCACTCTGTCAT+CGG | 0.539289 | 3.3:+93352497 | MS.gene69388:CDS |
| GTCTTGTTGCGCCGGAGATG+TGG | 0.543499 | 3.3:-93352549 | None:intergenic |
| GCAATTTCAGTTTATATGAG+AGG | 0.544710 | 3.3:+93354875 | MS.gene69388:CDS |
| CGATGACAGAGTGAGTTGAT+TGG | 0.548204 | 3.3:-93352496 | None:intergenic |
| GGTTAGTGGCTAAGTATGGT+GGG | 0.551859 | 3.3:+93354896 | MS.gene69388:CDS |
| TGTATGGAGCTGCTGAACAG+TGG | 0.557881 | 3.3:+93354989 | MS.gene69388:CDS |
| GACAGAGTGAGTTGATTGGT+TGG | 0.560405 | 3.3:-93352492 | None:intergenic |
| GAGCTGCTCGAGGCGGTCGG+AGG | 0.571364 | 3.3:-93352427 | None:intergenic |
| AGGTTAGTGGCTAAGTATGG+TGG | 0.582553 | 3.3:+93354895 | MS.gene69388:CDS |
| TAATTGGTCTCATTACAAGA+AGG | 0.583029 | 3.3:+93352844 | MS.gene69388:CDS |
| CCATATCTTGACCTGACTTG+AGG | 0.583256 | 3.3:-93355219 | None:intergenic |
| TCTCTTAGACACGAAATACA+TGG | 0.584697 | 3.3:-93354926 | None:intergenic |
| ATGGAGCTGCTCGAGGCGGT+CGG | 0.588493 | 3.3:-93352430 | None:intergenic |
| TCGAGGCGGTCGGAGGAAGG+TGG | 0.590975 | 3.3:-93352420 | None:intergenic |
| GTCAAATATGGAGCTGCTCG+AGG | 0.596084 | 3.3:-93352437 | None:intergenic |
| CAGTGGGTTGAAGCTTTGAA+GGG | 0.598125 | 3.3:+93355006 | MS.gene69388:CDS |
| GAGGAAGGTGGAAGCCGCAG+TGG | 0.599666 | 3.3:-93352408 | None:intergenic |
| AAGATATGGTAGAGCACACA+AGG | 0.602564 | 3.3:+93355233 | MS.gene69388:CDS |
| ATGCAGATGAAGAAAAGAAG+TGG | 0.611944 | 3.3:+93353058 | MS.gene69388:CDS |
| CAACAAGACCTCAAAGCAAG+AGG | 0.620653 | 3.3:+93352563 | MS.gene69388:CDS |
| TGGTATTCAGTACAAAGTGG+TGG | 0.629118 | 3.3:+93352793 | MS.gene69388:CDS |
| TTGCGCCGGAGATGTGGCAG+TGG | 0.629506 | 3.3:-93352543 | None:intergenic |
| ACTGAGCTAGCAAGAATGAG+AGG | 0.632041 | 3.3:+93352341 | None:intergenic |
| GTTAGTGGCTAAGTATGGTG+GGG | 0.646752 | 3.3:+93354897 | MS.gene69388:CDS |
| CAATATCACTGATGAGCGTG+AGG | 0.652789 | 3.3:+93354963 | MS.gene69388:CDS |
| TATCTTGACCTGACTTGAGG+TGG | 0.659112 | 3.3:-93355216 | None:intergenic |
| GCAAGAATGAGAGGACTCAA+CGG | 0.662333 | 3.3:+93352350 | None:intergenic |
| TCATGGTATTCAGTACAAAG+TGG | 0.680108 | 3.3:+93352790 | MS.gene69388:CDS |
| TAGGTGGGTAGATAATCACT+TGG | 0.683522 | 3.3:+93353555 | MS.gene69388:intron |
| AAATATGGAGCTGCTCGAGG+CGG | 0.687546 | 3.3:-93352434 | None:intergenic |
| CTTAAGAGCCAACTCCACTG+CGG | 0.786495 | 3.3:+93352394 | MS.gene69388:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAGTAAATTTTTTTTTGT+AGG | - | chr3.3:93354232-93354251 | None:intergenic | 10.0% |
| !!! | TAAGTAAATTTTTTTTTGTA+GGG | - | chr3.3:93354231-93354250 | None:intergenic | 10.0% |
| !!! | TATCTTTTTTAGTTAAAATA+CGG | + | chr3.3:93353147-93353166 | MS.gene69388:intron | 10.0% |
| !!! | TTAAAAAATTTAAGAGTATA+AGG | - | chr3.3:93354293-93354312 | None:intergenic | 10.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | - | chr3.3:93354202-93354221 | None:intergenic | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | + | chr3.3:93354543-93354562 | MS.gene69388:intron | 15.0% |
| !! | AATAATCATTTGATAAATCA+AGG | - | chr3.3:93353517-93353536 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr3.3:93354615-93354634 | MS.gene69388:intron | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | + | chr3.3:93354424-93354443 | MS.gene69388:intron | 15.0% |
| !! | TTTGTTGATATTATAACAAT+GGG | + | chr3.3:93353833-93353852 | MS.gene69388:intron | 15.0% |
| !!! | AAACAAAATTTATTTTAGCA+GGG | - | chr3.3:93354264-93354283 | None:intergenic | 15.0% |
| !!! | AAGTTATCAGATTTTTTTTT+TGG | - | chr3.3:93353788-93353807 | None:intergenic | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | + | chr3.3:93354459-93354478 | MS.gene69388:intron | 15.0% |
| !!! | AGATTAATTACATATGATTT+TGG | + | chr3.3:93353491-93353510 | MS.gene69388:intron | 15.0% |
| !!! | ATTTGTTGATATTATAACAA+TGG | + | chr3.3:93353832-93353851 | MS.gene69388:intron | 15.0% |
| !!! | TAAACAAAATTTATTTTAGC+AGG | - | chr3.3:93354265-93354284 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTCCTTTTTATAT+TGG | + | chr3.3:93353463-93353482 | MS.gene69388:intron | 15.0% |
| !! | AAGTTATCAGATCTTAAAAA+AGG | - | chr3.3:93353759-93353778 | None:intergenic | 20.0% |
| !! | AATATACAATAAACCACAAA+TGG | - | chr3.3:93352940-93352959 | None:intergenic | 20.0% |
| !! | AATATTTATCAACCATTACA+AGG | + | chr3.3:93354760-93354779 | MS.gene69388:intron | 20.0% |
| !! | ATATTTATCAACCATTACAA+GGG | + | chr3.3:93354761-93354780 | MS.gene69388:intron | 20.0% |
| !! | ATCAATTATGTCTAACAAAA+GGG | - | chr3.3:93353001-93353020 | None:intergenic | 20.0% |
| !! | GATAAATATTGCTTCATAAA+AGG | - | chr3.3:93354750-93354769 | None:intergenic | 20.0% |
| !! | GTGTTAAAAACGTTATTAAA+AGG | - | chr3.3:93354489-93354508 | None:intergenic | 20.0% |
| !! | TATCAATTATGTCTAACAAA+AGG | - | chr3.3:93353002-93353021 | None:intergenic | 20.0% |
| !!! | AATAACTCTACATTAGTTTT+AGG | + | chr3.3:93354127-93354146 | MS.gene69388:intron | 20.0% |
| !!! | ATAACTCTACATTAGTTTTA+GGG | + | chr3.3:93354128-93354147 | MS.gene69388:intron | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | - | chr3.3:93354513-93354532 | None:intergenic | 20.0% |
| !!! | TGTTACATTCAGTTATTTTA+TGG | + | chr3.3:93353807-93353826 | MS.gene69388:intron | 20.0% |
| !!! | TTTAGGGTTAAATATGTTTT+TGG | + | chr3.3:93354144-93354163 | MS.gene69388:intron | 20.0% |
| ! | AAAACAGTTCGATATATGTT+TGG | - | chr3.3:93353595-93353614 | None:intergenic | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | + | chr3.3:93354554-93354573 | MS.gene69388:intron | 25.0% |
| ! | ACTACTAAAAATTCTCTACT+TGG | - | chr3.3:93353355-93353374 | None:intergenic | 25.0% |
| ! | AGCTTAATATTTGATGAATC+AGG | - | chr3.3:93353903-93353922 | None:intergenic | 25.0% |
| ! | ATAAAGAGCAGAAATAGAAA+AGG | - | chr3.3:93354826-93354845 | None:intergenic | 25.0% |
| ! | ATCTTGCATCCAATATAAAA+AGG | - | chr3.3:93353475-93353494 | None:intergenic | 25.0% |
| ! | GGAAAAAATGCAAAAACAAT+AGG | - | chr3.3:93352752-93352771 | None:intergenic | 25.0% |
| ! | GTATCATATCTCAGTTATTA+TGG | - | chr3.3:93355065-93355084 | None:intergenic | 25.0% |
| ! | GTTAGACATAATTGATAAGT+TGG | + | chr3.3:93353005-93353024 | MS.gene69388:intron | 25.0% |
| ! | GTTCAAATAAACAAGAAGAA+AGG | - | chr3.3:93353109-93353128 | None:intergenic | 25.0% |
| ! | TAACTAAAAAAGATAGCTAG+AGG | - | chr3.3:93353142-93353161 | None:intergenic | 25.0% |
| ! | TCAATTATGTCTAACAAAAG+GGG | - | chr3.3:93353000-93353019 | None:intergenic | 25.0% |
| ! | TCACAAATATAAGCACTTAA+GGG | - | chr3.3:93355128-93355147 | None:intergenic | 25.0% |
| ! | TGAAAAAGAACAACTTCTTT+GGG | - | chr3.3:93352611-93352630 | None:intergenic | 25.0% |
| ! | TGAACAAGAAAGAGATTAAT+TGG | + | chr3.3:93352828-93352847 | MS.gene69388:CDS | 25.0% |
| ! | TTAATATTTGATGAATCAGG+AGG | - | chr3.3:93353900-93353919 | None:intergenic | 25.0% |
| ! | TTAATCTCTTTCTTGTTCAT+CGG | - | chr3.3:93352827-93352846 | None:intergenic | 25.0% |
| ! | TTATATCACTACTAAAGGTA+AGG | + | chr3.3:93353636-93353655 | MS.gene69388:intron | 25.0% |
| ! | TTCACAAATATAAGCACTTA+AGG | - | chr3.3:93355129-93355148 | None:intergenic | 25.0% |
| ! | TTCGATTATATCACTACTAA+AGG | + | chr3.3:93353631-93353650 | MS.gene69388:CDS | 25.0% |
| ! | TTGAAAAAGAACAACTTCTT+TGG | - | chr3.3:93352612-93352631 | None:intergenic | 25.0% |
| ! | TTTGTAATCGATCTCTAAAT+CGG | - | chr3.3:93353297-93353316 | None:intergenic | 25.0% |
| !! | CTAAGGGTTAATTATGTTTT+TGG | - | chr3.3:93354673-93354692 | None:intergenic | 25.0% |
| !! | GTGCTTATATTTGTGAATTT+TGG | + | chr3.3:93355132-93355151 | MS.gene69388:intron | 25.0% |
| !! | TGAACATACCAAGAAATTTT+CGG | - | chr3.3:93355032-93355051 | None:intergenic | 25.0% |
| !!! | AACATACAGCTTTAAAAACA+TGG | - | chr3.3:93353970-93353989 | None:intergenic | 25.0% |
| !!! | TAATTGATAAGTTGGTCAAA+AGG | + | chr3.3:93353013-93353032 | MS.gene69388:CDS | 25.0% |
| !!! | TAGAGTTATTTTTCAAACTG+AGG | - | chr3.3:93354117-93354136 | None:intergenic | 25.0% |
| !!! | TTAAAGCTGTATGTTTTGAA+AGG | + | chr3.3:93353975-93353994 | MS.gene69388:intron | 25.0% |
| !!! | TTATATTTGTGAATTTTGGC+AGG | + | chr3.3:93355136-93355155 | MS.gene69388:intron | 25.0% |
| AAAAGTAATCACCCTTGTAA+TGG | - | chr3.3:93354775-93354794 | None:intergenic | 30.0% | |
| AAAGGAATTATCTTCGCATT+TGG | - | chr3.3:93353741-93353760 | None:intergenic | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | + | chr3.3:93354630-93354649 | MS.gene69388:intron | 30.0% | |
| AAGTAAGGACTAAACTTAGA+AGG | - | chr3.3:93354187-93354206 | None:intergenic | 30.0% | |
| AATAATCTCATAAATGCCCA+TGG | - | chr3.3:93353416-93353435 | None:intergenic | 30.0% | |
| AGTAACGTTTAATCGTGTTA+AGG | - | chr3.3:93352694-93352713 | None:intergenic | 30.0% | |
| CAATTATGTCTAACAAAAGG+GGG | - | chr3.3:93352999-93353018 | None:intergenic | 30.0% | |
| CATCAAATATTAAGCTGTCT+TGG | + | chr3.3:93353907-93353926 | MS.gene69388:intron | 30.0% | |
| CTACATAGACTGAAATATTC+CGG | + | chr3.3:93353326-93353345 | MS.gene69388:intron | 30.0% | |
| CTTGTTCATATTTCCATTTG+TGG | + | chr3.3:93352924-93352943 | MS.gene69388:intron | 30.0% | |
| GAAAATACTTCTCTCTCTAA+AGG | - | chr3.3:93354041-93354060 | None:intergenic | 30.0% | |
| GCAATTTCAGTTTATATGAG+AGG | + | chr3.3:93354875-93354894 | MS.gene69388:CDS | 30.0% | |
| TGGGCATTTATGAGATTATT+AGG | + | chr3.3:93353416-93353435 | MS.gene69388:intron | 30.0% | |
| TTATGAGATTATTAGGAGTC+TGG | + | chr3.3:93353423-93353442 | MS.gene69388:intron | 30.0% | |
| ! | CAAGTTTAGAACACTTTGAA+AGG | + | chr3.3:93354327-93354346 | MS.gene69388:intron | 30.0% |
| ! | CAATTGCAATCTAAAACCAT+GGG | + | chr3.3:93353397-93353416 | MS.gene69388:intron | 30.0% |
| ! | TAATTGGTCTCATTACAAGA+AGG | + | chr3.3:93352844-93352863 | MS.gene69388:CDS | 30.0% |
| !! | TTTGCTGTGACTTGTTATAT+AGG | + | chr3.3:93353536-93353555 | MS.gene69388:intron | 30.0% |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | + | chr3.3:93354586-93354605 | MS.gene69388:intron | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | + | chr3.3:93354585-93354604 | MS.gene69388:intron | 30.0% |
| !!! | TGTTTTTGGTCCCTATAAAA+TGG | + | chr3.3:93354158-93354177 | MS.gene69388:intron | 30.0% |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | + | chr3.3:93354462-93354481 | MS.gene69388:intron | 30.0% |
| AAACATGGCTCAGTTGAATA+TGG | - | chr3.3:93353955-93353974 | None:intergenic | 35.0% | |
| ACAGCAAGATCTGCTAAATT+AGG | - | chr3.3:93355172-93355191 | None:intergenic | 35.0% | |
| ACCTTTAACCTTGTTGCAAA+AGG | - | chr3.3:93352648-93352667 | None:intergenic | 35.0% | |
| AGAGCAGAAATAGAAAAGGA+AGG | - | chr3.3:93354822-93354841 | None:intergenic | 35.0% | |
| ATGCAGATGAAGAAAAGAAG+TGG | + | chr3.3:93353058-93353077 | MS.gene69388:CDS | 35.0% | |
| CAGTTTATATGAGAGGTTAG+TGG | + | chr3.3:93354882-93354901 | MS.gene69388:CDS | 35.0% | |
| CCTTTAACCTTGTTGCAAAA+GGG | - | chr3.3:93352647-93352666 | None:intergenic | 35.0% | |
| GTCATCGGATTTAGGTATTA+CGG | + | chr3.3:93352512-93352531 | MS.gene69388:CDS | 35.0% | |
| TATAAGCACTTAAGGGTTAC+AGG | - | chr3.3:93355121-93355140 | None:intergenic | 35.0% | |
| TCATGGTATTCAGTACAAAG+TGG | + | chr3.3:93352790-93352809 | MS.gene69388:CDS | 35.0% | |
| TCTCTTAGACACGAAATACA+TGG | - | chr3.3:93354929-93354948 | None:intergenic | 35.0% | |
| TCTGCATTCAAGTCATAATC+TGG | - | chr3.3:93353045-93353064 | None:intergenic | 35.0% | |
| TGTATATTAAGCTGTCTCTG+TGG | + | chr3.3:93353857-93353876 | MS.gene69388:intron | 35.0% | |
| TTAAAACCTTAGAAGAGCAG+TGG | - | chr3.3:93353184-93353203 | None:intergenic | 35.0% | |
| TTTGATGTTGTAGAGAGTTG+TGG | + | chr3.3:93353210-93353229 | MS.gene69388:intron | 35.0% | |
| ! | AAAATTCTCTACTTGGTGAC+CGG | - | chr3.3:93353348-93353367 | None:intergenic | 35.0% |
| ! | AAGCAAGAGGCATAAAACTA+AGG | - | chr3.3:93354690-93354709 | None:intergenic | 35.0% |
| ! | AGCAAGAGGCATAAAACTAA+GGG | - | chr3.3:93354689-93354708 | None:intergenic | 35.0% |
| ! | GAACAATTGGTTGATTCTTC+AGG | + | chr3.3:93352890-93352909 | MS.gene69388:CDS | 35.0% |
| ! | GCAATTGCAATCTAAAACCA+TGG | + | chr3.3:93353396-93353415 | MS.gene69388:intron | 35.0% |
| ! | TACAAGGTCGCAATTTTGTA+GGG | + | chr3.3:93354646-93354665 | MS.gene69388:intron | 35.0% |
| ! | TTACAAGGTCGCAATTTTGT+AGG | + | chr3.3:93354645-93354664 | MS.gene69388:intron | 35.0% |
| !! | CTGTGACTTGTTATATAGGT+GGG | + | chr3.3:93353540-93353559 | MS.gene69388:intron | 35.0% |
| !! | GGGTTAGTTGAAGTCAAATA+TGG | - | chr3.3:93352452-93352471 | None:intergenic | 35.0% |
| !! | TAGAAGGTCGCCATTTTATA+GGG | - | chr3.3:93354171-93354190 | None:intergenic | 35.0% |
| !! | TTAGAAGGTCGCCATTTTAT+AGG | - | chr3.3:93354172-93354191 | None:intergenic | 35.0% |
| AAAAGCAAGAACTTGGAGTG+AGG | - | chr3.3:93354091-93354110 | None:intergenic | 40.0% | |
| AACTGAGTACGAAAAGCAAG+AGG | - | chr3.3:93354703-93354722 | None:intergenic | 40.0% | |
| AAGATATGGTAGAGCACACA+AGG | + | chr3.3:93355233-93355252 | MS.gene69388:CDS | 40.0% | |
| CAATCAACTCACTCTGTCAT+CGG | + | chr3.3:93352497-93352516 | MS.gene69388:CDS | 40.0% | |
| CCATGATAATCTAGAAACGC+TGG | - | chr3.3:93352776-93352795 | None:intergenic | 40.0% | |
| GAGGATGAAAAGCAAGAACT+TGG | - | chr3.3:93354098-93354117 | None:intergenic | 40.0% | |
| TAGGTGGGTAGATAATCACT+TGG | + | chr3.3:93353555-93353574 | MS.gene69388:intron | 40.0% | |
| TCACCATCAACAGTGACAAT+AGG | - | chr3.3:93352872-93352891 | None:intergenic | 40.0% | |
| TCCATAGCATGATAGACTTC+AGG | - | chr3.3:93354849-93354868 | None:intergenic | 40.0% | |
| TCCTGAAGTCTATCATGCTA+TGG | + | chr3.3:93354845-93354864 | MS.gene69388:intron | 40.0% | |
| TCGCATTTGGAAAATGACAG+AGG | - | chr3.3:93353728-93353747 | None:intergenic | 40.0% | |
| TCTATCATGCTATGGAGTGT+AGG | + | chr3.3:93354853-93354872 | MS.gene69388:intron | 40.0% | |
| TGATAATCTAGAAACGCTGG+AGG | - | chr3.3:93352773-93352792 | None:intergenic | 40.0% | |
| TGGTATTCAGTACAAAGTGG+TGG | + | chr3.3:93352793-93352812 | MS.gene69388:CDS | 40.0% | |
| TTGAAGGGCCGAAAATTTCT+TGG | + | chr3.3:93355021-93355040 | MS.gene69388:CDS | 40.0% | |
| TTTGAAAGGATACCAGTCGA+GGG | + | chr3.3:93353989-93354008 | MS.gene69388:intron | 40.0% | |
| ! | AGCGATCAACGAGATTTTGA+GGG | - | chr3.3:93352472-93352491 | None:intergenic | 40.0% |
| ! | CCAGCGTTTCTAGATTATCA+TGG | + | chr3.3:93352773-93352792 | MS.gene69388:intron | 40.0% |
| ! | CCCTTTTGCAACAAGGTTAA+AGG | + | chr3.3:93352644-93352663 | MS.gene69388:CDS | 40.0% |
| ! | TCTGAGATGGAAAATGCAGT+TGG | + | chr3.3:93355271-93355290 | MS.gene69388:CDS | 40.0% |
| ! | TTAGCAGATCTTGCTGTCTT+TGG | + | chr3.3:93355175-93355194 | MS.gene69388:CDS | 40.0% |
| !! | CACTGTTGATGGTGAACAAT+TGG | + | chr3.3:93352877-93352896 | MS.gene69388:CDS | 40.0% |
| !! | GCTGTGACTTGTTATATAGG+TGG | + | chr3.3:93353539-93353558 | MS.gene69388:intron | 40.0% |
| !! | GTGAATTTTGGCAGGTGATT+TGG | + | chr3.3:93355144-93355163 | MS.gene69388:intron | 40.0% |
| !! | TTTTGAAAGGATACCAGTCG+AGG | + | chr3.3:93353988-93354007 | MS.gene69388:intron | 40.0% |
| !!! | TGGGAATTGGTTTTCTGAGA+TGG | + | chr3.3:93355258-93355277 | MS.gene69388:CDS | 40.0% |
| AAGGAAGGCAGCAGACAATA+AGG | - | chr3.3:93354807-93354826 | None:intergenic | 45.0% | |
| AGCACACAAGGATTGGGAAT+TGG | + | chr3.3:93355245-93355264 | MS.gene69388:CDS | 45.0% | |
| AGGAAGGCAGCAGACAATAA+GGG | - | chr3.3:93354806-93354825 | None:intergenic | 45.0% | |
| AGGTTAGTGGCTAAGTATGG+TGG | + | chr3.3:93354895-93354914 | MS.gene69388:CDS | 45.0% | |
| ATGGTAGAGCACACAAGGAT+TGG | + | chr3.3:93355238-93355257 | MS.gene69388:CDS | 45.0% | |
| CAACAAGACCTCAAAGCAAG+AGG | + | chr3.3:93352563-93352582 | MS.gene69388:CDS | 45.0% | |
| CAATATCACTGATGAGCGTG+AGG | + | chr3.3:93354963-93354982 | MS.gene69388:CDS | 45.0% | |
| CCTCAAGTCAGGTCAAGATA+TGG | + | chr3.3:93355219-93355238 | MS.gene69388:CDS | 45.0% | |
| CTCACTCTGTCATCGGATTT+AGG | + | chr3.3:93352504-93352523 | MS.gene69388:CDS | 45.0% | |
| CTTGTACCACTGCTCTTCTA+AGG | + | chr3.3:93353175-93353194 | MS.gene69388:intron | 45.0% | |
| GAGAGGTTAGTGGCTAAGTA+TGG | + | chr3.3:93354892-93354911 | MS.gene69388:CDS | 45.0% | |
| GATGGAAAATGCAGTTGGAC+AGG | + | chr3.3:93355276-93355295 | MS.gene69388:CDS | 45.0% | |
| GGTTAGTGGCTAAGTATGGT+GGG | + | chr3.3:93354896-93354915 | MS.gene69388:CDS | 45.0% | |
| GTGCCTATTGTCACTGTTGA+TGG | + | chr3.3:93352866-93352885 | MS.gene69388:CDS | 45.0% | |
| GTTAGTGGCTAAGTATGGTG+GGG | + | chr3.3:93354897-93354916 | MS.gene69388:CDS | 45.0% | |
| GTTCTGATCCTCTTGCTTTG+AGG | - | chr3.3:93352574-93352593 | None:intergenic | 45.0% | |
| TGGTAGAGCACACAAGGATT+GGG | + | chr3.3:93355239-93355258 | MS.gene69388:CDS | 45.0% | |
| TTAAGGGTTACAGGTCTTCG+AGG | - | chr3.3:93355112-93355131 | None:intergenic | 45.0% | |
| ! | AGCTTGTCCCTTTTGCAACA+AGG | + | chr3.3:93352637-93352656 | MS.gene69388:CDS | 45.0% |
| ! | CCATATCTTGACCTGACTTG+AGG | - | chr3.3:93355222-93355241 | None:intergenic | 45.0% |
| ! | GAGCGATCAACGAGATTTTG+AGG | - | chr3.3:93352473-93352492 | None:intergenic | 45.0% |
| ! | TATCTTGACCTGACTTGAGG+TGG | - | chr3.3:93355219-93355238 | None:intergenic | 45.0% |
| !! | ACAGTGGGTTGAAGCTTTGA+AGG | + | chr3.3:93355005-93355024 | MS.gene69388:CDS | 45.0% |
| !! | CAGTGGGTTGAAGCTTTGAA+GGG | + | chr3.3:93355006-93355025 | MS.gene69388:CDS | 45.0% |
| !! | CGATGACAGAGTGAGTTGAT+TGG | - | chr3.3:93352499-93352518 | None:intergenic | 45.0% |
| !! | GACAGAGTGAGTTGATTGGT+TGG | - | chr3.3:93352495-93352514 | None:intergenic | 45.0% |
| AAATACCTCTCTCCCTCGAC+TGG | - | chr3.3:93354004-93354023 | None:intergenic | 50.0% | |
| AAATATGGAGCTGCTCGAGG+CGG | - | chr3.3:93352437-93352456 | None:intergenic | 50.0% | |
| AGAAAAGAAGTGGCGCGAGT+AGG | + | chr3.3:93353068-93353087 | MS.gene69388:intron | 50.0% | |
| CTTAAGAGCCAACTCCACTG+CGG | + | chr3.3:93352394-93352413 | MS.gene69388:CDS | 50.0% | |
| GTATGGAGCTGCTGAACAGT+GGG | + | chr3.3:93354990-93355009 | MS.gene69388:CDS | 50.0% | |
| GTCAAATATGGAGCTGCTCG+AGG | - | chr3.3:93352440-93352459 | None:intergenic | 50.0% | |
| TGTATGGAGCTGCTGAACAG+TGG | + | chr3.3:93354989-93355008 | MS.gene69388:CDS | 50.0% | |
| ! | GATGAGCGTGAGGCTTTGTA+TGG | + | chr3.3:93354973-93354992 | MS.gene69388:CDS | 50.0% |
| ! | ACCTGACTTGAGGTGGCGAA+TGG | - | chr3.3:93355212-93355231 | None:intergenic | 55.0% |
| ! | CCTGACTTGAGGTGGCGAAT+GGG | - | chr3.3:93355211-93355230 | None:intergenic | 55.0% |
| ! | CGCAGTGGAGTTGGCTCTTA+AGG | - | chr3.3:93352396-93352415 | None:intergenic | 55.0% |
| ! | GGAGTTGGCTCTTAAGGCTC+TGG | - | chr3.3:93352390-93352409 | None:intergenic | 55.0% |
| ! | GGCTCTTAAGGCTCTGGCAA+TGG | - | chr3.3:93352384-93352403 | None:intergenic | 55.0% |
| !! | GCTTTGAGGTCTTGTTGCGC+CGG | - | chr3.3:93352560-93352579 | None:intergenic | 55.0% |
| CCCATTCGCCACCTCAAGTC+AGG | + | chr3.3:93355208-93355227 | MS.gene69388:CDS | 60.0% | |
| GGATACCAGTCGAGGGAGAG+AGG | + | chr3.3:93353996-93354015 | MS.gene69388:intron | 60.0% | |
| ! | GTCTTGTTGCGCCGGAGATG+TGG | - | chr3.3:93352552-93352571 | None:intergenic | 60.0% |
| ATGGAGCTGCTCGAGGCGGT+CGG | - | chr3.3:93352433-93352452 | None:intergenic | 65.0% | |
| GAGGAAGGTGGAAGCCGCAG+TGG | - | chr3.3:93352411-93352430 | None:intergenic | 65.0% | |
| GGTGGAAGCCGCAGTGGAGT+TGG | - | chr3.3:93352405-93352424 | None:intergenic | 65.0% | |
| TGCCGCCACTGCCACATCTC+CGG | + | chr3.3:93352538-93352557 | MS.gene69388:CDS | 65.0% | |
| TTGCGCCGGAGATGTGGCAG+TGG | - | chr3.3:93352546-93352565 | None:intergenic | 65.0% | |
| CGCCGGAGATGTGGCAGTGG+CGG | - | chr3.3:93352543-93352562 | None:intergenic | 70.0% | |
| TCGAGGCGGTCGGAGGAAGG+TGG | - | chr3.3:93352423-93352442 | None:intergenic | 70.0% | |
| TGCTCGAGGCGGTCGGAGGA+AGG | - | chr3.3:93352426-93352445 | None:intergenic | 70.0% | |
| GAGCTGCTCGAGGCGGTCGG+AGG | - | chr3.3:93352430-93352449 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 93352356 | 93355318 | 93352356 | ID=MS.gene69388 |
| chr3.3 | mRNA | 93352356 | 93355318 | 93352356 | ID=MS.gene69388.t1;Parent=MS.gene69388 |
| chr3.3 | exon | 93352356 | 93352665 | 93352356 | ID=MS.gene69388.t1.exon1;Parent=MS.gene69388.t1 |
| chr3.3 | CDS | 93352356 | 93352665 | 93352356 | ID=cds.MS.gene69388.t1;Parent=MS.gene69388.t1 |
| chr3.3 | exon | 93352777 | 93352911 | 93352777 | ID=MS.gene69388.t1.exon2;Parent=MS.gene69388.t1 |
| chr3.3 | CDS | 93352777 | 93352911 | 93352777 | ID=cds.MS.gene69388.t1;Parent=MS.gene69388.t1 |
| chr3.3 | exon | 93353010 | 93353085 | 93353010 | ID=MS.gene69388.t1.exon3;Parent=MS.gene69388.t1 |
| chr3.3 | CDS | 93353010 | 93353085 | 93353010 | ID=cds.MS.gene69388.t1;Parent=MS.gene69388.t1 |
| chr3.3 | exon | 93353558 | 93353652 | 93353558 | ID=MS.gene69388.t1.exon4;Parent=MS.gene69388.t1 |
| chr3.3 | CDS | 93353558 | 93353652 | 93353558 | ID=cds.MS.gene69388.t1;Parent=MS.gene69388.t1 |
| chr3.3 | exon | 93354875 | 93355042 | 93354875 | ID=MS.gene69388.t1.exon5;Parent=MS.gene69388.t1 |
| chr3.3 | CDS | 93354875 | 93355042 | 93354875 | ID=cds.MS.gene69388.t1;Parent=MS.gene69388.t1 |
| chr3.3 | exon | 93355158 | 93355318 | 93355158 | ID=MS.gene69388.t1.exon6;Parent=MS.gene69388.t1 |
| chr3.3 | CDS | 93355158 | 93355318 | 93355158 | ID=cds.MS.gene69388.t1;Parent=MS.gene69388.t1 |
| Gene Sequence |
| Protein sequence |
