AlfalfaGEDB | MS.gene69400

M. sativa cultivar XinJiangDaYe / MS.gene69400

KEGG: -
GO: -
PFAM: PF02704.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69400.t1	XP_003603759.1	95.1	103	5	0	1	103	1	103	1.80E-49	204.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69400.t1	P46689	58.3	103	38	1	1	103	1	98	7.4e-28	124.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69400.t1	G7J582	95.1	103	5	0	1	103	1	103	1.3e-49	204.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049232	MS.gene69400	0.828069	1.10E-54	-1.69E-46
MS.gene05010	MS.gene69400	0.830286	3.20E-55	-1.69E-46
MS.gene050170	MS.gene69400	0.824371	8.37E-54	-1.69E-46
MS.gene050216	MS.gene69400	0.805068	1.60E-49	-1.69E-46
MS.gene050323	MS.gene69400	0.819013	1.45E-52	-1.69E-46
MS.gene050496	MS.gene69400	0.848942	4.44E-60	-1.69E-46
MS.gene050502	MS.gene69400	0.800964	1.13E-48	-1.69E-46
MS.gene050868	MS.gene69400	0.828092	1.09E-54	-1.69E-46
MS.gene050871	MS.gene69400	0.830236	3.29E-55	-1.69E-46
MS.gene051509	MS.gene69400	0.803585	3.25E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69400.t1	MTR_3g113890	95.146	103	5	0	1	103	1	103	1.37e-68	200
MS.gene69400.t1	MTR_1g025220	66.990	103	32	1	1	103	1	101	4.09e-46	144
MS.gene69400.t1	MTR_1g025250	66.990	103	31	1	1	103	1	100	5.80e-38	123
MS.gene69400.t1	MTR_1g096370	52.222	90	42	1	14	103	7	95	5.09e-29	100
MS.gene69400.t1	MTR_4g106860	52.381	84	37	2	21	103	34	115	3.37e-24	89.0
MS.gene69400.t1	MTR_8g075920	52.326	86	40	1	18	103	19	103	4.72e-23	85.5
MS.gene69400.t1	MTR_3g113850	88.889	45	5	0	44	88	406	450	6.32e-21	85.9
MS.gene69400.t1	MTR_8g062800	38.889	108	54	2	8	103	5	112	7.15e-20	77.8
MS.gene69400.t1	MTR_6g007897	57.377	61	25	1	44	103	188	248	1.19e-15	70.1
MS.gene69400.t1	MTR_5g036880	36.458	96	57	2	8	103	1	92	2.44e-15	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69400.t1	AT1G75750	68.056	72	23	0	32	103	27	98	6.02e-32	108
MS.gene69400.t1	AT1G75750	68.056	72	23	0	32	103	26	97	6.18e-32	108
MS.gene69400.t1	AT2G18420	68.919	74	22	1	31	103	21	94	3.11e-30	103
MS.gene69400.t1	AT2G18420	75.806	62	15	0	42	103	9	70	4.26e-29	100
MS.gene69400.t1	AT4G09600	59.494	79	29	1	28	103	21	99	2.12e-26	94.0
MS.gene69400.t1	AT1G22690	41.593	113	56	3	1	103	7	119	2.70e-23	86.7
MS.gene69400.t1	AT1G22690	41.593	113	56	3	1	103	7	119	2.70e-23	86.7
MS.gene69400.t1	AT1G22690	41.593	113	56	3	1	103	7	119	2.70e-23	86.7
MS.gene69400.t1	AT4G09610	62.025	79	27	1	28	103	21	99	1.58e-19	76.6
MS.gene69400.t1	AT5G14920	56.923	65	27	1	40	103	211	275	4.92e-17	73.9

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Find 31 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACGGCCGCGCCTCTGCCACA+GGG	0.616011	3.3:-93229508	MS.gene69400:CDS
AGCAAGTTCCACATGCCCTG+TGG	0.700479	3.3:+93229493	None:intergenic
ATATAAATTTCAGATTGCAA+TGG	0.566444	3.3:-93229561	MS.gene69400:intron
CACGGCCGCGCCTCTGCCAC+AGG	0.395156	3.3:-93229509	MS.gene69400:CDS
CATAGCAGGGACACATTTCT+TGG	0.264407	3.3:+93229430	None:intergenic
CATGCCCTGTGGCAGAGGCG+CGG	0.598879	3.3:+93229504	None:intergenic
CATGTGGAACTTGCTGCAGT+CGG	0.613537	3.3:-93229485	MS.gene69400:CDS
CGCCTCTGCCACAGGGCATG+TGG	0.480960	3.3:-93229501	MS.gene69400:CDS
CGGTGCAACTGCGTGCCACC+GGG	0.551251	3.3:-93229465	MS.gene69400:CDS
CTAGGTGCCGTTTATCATCA+CGG	0.637583	3.3:-93229527	MS.gene69400:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTCCATCTTGTTCATGCTT+TGG	-	chr3.3:93229439-93229458	MS.gene69400:CDS	40.0%
TTTCATCAACTGCTTCTGTC+TGG	-	chr3.3:93229642-93229661	MS.gene69400:intron	40.0%
CATAGCAGGGACACATTTCT+TGG	+	chr3.3:93230138-93230157	None:intergenic	45.0%
GGTCCAAAGCATGAACAAGA+TGG	+	chr3.3:93229445-93229464	None:intergenic	45.0%
TCTTGGTTACCAGAAGTTCC+CGG	+	chr3.3:93230121-93230140	None:intergenic	45.0%
TGAGTTTCTGCGTGTACATG+CGG	+	chr3.3:93229587-93229606	None:intergenic	45.0%
TATGCCAACCAAACCACCCA+TGG	-	chr3.3:93230154-93230173	MS.gene69400:CDS	50.0%
AGCAAGTTCCACATGCCCTG+TGG	+	chr3.3:93230075-93230094	None:intergenic	55.0%
TGGTTACCAGAAGTTCCCGG+TGG	+	chr3.3:93230118-93230137	None:intergenic	55.0%
GCACTTGCGTCTGCCTCCAT+GGG	+	chr3.3:93230173-93230192	None:intergenic	60.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	93229389	93230198	93229389	ID=MS.gene69400
chr3.3	mRNA	93229389	93230198	93229389	ID=MS.gene69400.t1;Parent=MS.gene69400
chr3.3	exon	93230118	93230198	93230118	ID=MS.gene69400.t1.exon1;Parent=MS.gene69400.t1
chr3.3	CDS	93230118	93230198	93230118	ID=cds.MS.gene69400.t1;Parent=MS.gene69400.t1
chr3.3	exon	93229958	93230006	93229958	ID=MS.gene69400.t1.exon2;Parent=MS.gene69400.t1
chr3.3	CDS	93229958	93230006	93229958	ID=cds.MS.gene69400.t1;Parent=MS.gene69400.t1
chr3.3	exon	93229389	93229570	93229389	ID=MS.gene69400.t1.exon3;Parent=MS.gene69400.t1
chr3.3	CDS	93229389	93229570	93229389	ID=cds.MS.gene69400.t1;Parent=MS.gene69400.t1

Gene Sequence

>MS.gene69400

ATGGCTCTCTTCAAGCTTCTAGTTACATCTCTTCTGGTAACTTTTGTCATTCTCCATCTTGTTCATGCTTTGGACCAGCCGGTAATTCAAAGCTATTGTTGCTCTCTTCATTCTTTTATGATTTTCAAGCTCCAAGCGTTTTCTTTATAAAATAACCAATTTAATTTAATTTAATTACATGTGTTTTTGTAGGAACCGCATGTACACGCAGAAACTCAAGTTTCTTTTCAGCAGCAGATAGGTAAAATTACTATTTCATCAACTGCTTCTGTCTGGTTTTAATTATTTGCTTAAAGTGGAAAAAATATATAAAACTAGACAGTGAATCAATTAATGAATAAAAAATATATGAACTAAACTAAGGAAGAACACATTCTTAATTATACAATACGAGAATGCAATTATAGCTTATAAAAAAAAAATCTAGTTTTTTAACGAATATGTATGCTAATGGGATAAAAGATTAGTAAAAAAAAGGTTAAATATTATAAAGAAACACAAATCTGTTTCTACTTCACATAAAAATCTTCAAACAAATTAATCTCTAATCAATTTTATCTAACTATCAAATTTATTTTAACCAAAAATATGTGTGTGAAGTAGATGATAAATTTGATATAAATTTCAGATTGCAATGGAGCATGTGCTGCTAGGTGCCGTTTATCATCACGGCCGCGCCTCTGCCACAGGGCATGTGGAACTTGCTGCAGTCGGTGCAACTGCGTGCCACCGGGAACTTCTGGTAACCAAGAAATGTGTCCCTGCTATGCCAACCAAACCACCCATGGAGGCAGACGCAAGTGCCCTTGA

Protein sequence

>MS.gene69400.t1

MALFKLLVTSLLVTFVILHLVHALDQPEPHVHAETQVSFQQQIDCNGACAARCRLSSRPRLCHRACGTCCSRCNCVPPGTSGNQEMCPCYANQTTHGGRRKCP