AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70460.t1 MTR_3g082760 99.000 200 2 0 1 200 1 200 1.27e-148 410
MS.gene70460.t1 MTR_8g054450 38.462 117 72 0 26 142 104 220 1.10e-21 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70460.t1 AT3G01790 80.899 178 34 0 8 185 14 191 1.58e-109 312
MS.gene70460.t1 AT3G01790 80.899 178 34 0 8 185 14 191 1.58e-109 312
MS.gene70460.t1 AT3G01790 81.667 120 22 0 8 127 14 133 1.00e-71 214
MS.gene70460.t1 AT1G78630 36.000 125 79 1 26 149 105 229 5.58e-20 84.7

Find 57 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCAGAGTTCTTTGCTTA+AGG 0.300702 3.1:+66537577 None:intergenic
CAGGGAAGATCCTTAATTTC+CGG 0.312788 3.1:+66536011 None:intergenic
ATCTTGATGGGCTCCGGTGG+CGG 0.315099 3.1:-66539180 MS.gene70460:CDS
ATTAAACGCATTAATCTTGA+TGG 0.336783 3.1:-66539193 MS.gene70460:CDS
TCAAATAGCTACTGTAGTTA+TGG 0.345393 3.1:-66537958 MS.gene70460:CDS
AATAACATCTGTAGGGTCTT+TGG 0.350210 3.1:+66537545 None:intergenic
AGGACAGGGACCGGAAATTA+AGG 0.354593 3.1:-66536021 MS.gene70460:CDS
TCTTGATGGGCTCCGGTGGC+GGG 0.385945 3.1:-66539179 MS.gene70460:CDS
AATGATTCGAGCACAGAAAA+AGG 0.392832 3.1:-66535897 MS.gene70460:CDS
CAAATAGCTACTGTAGTTAT+GGG 0.396768 3.1:-66537957 MS.gene70460:CDS
ATGTTCCTCATGCAGGTTCT+CGG 0.405648 3.1:-66537993 MS.gene70460:intron
CCTGGTAGTGAGCACCCCTT+TGG 0.427762 3.1:-66535992 MS.gene70460:CDS
ATATCTCCATCGTCACGATT+AGG 0.431994 3.1:+66537912 None:intergenic
AAGGTCTACTACTGGCATAC+AGG 0.442819 3.1:-66537834 MS.gene70460:CDS
AATCCTTACCTTGAGGTTGA+AGG 0.443780 3.1:+66539378 None:intergenic
CCAAAGGGGTGCTCACTACC+AGG 0.457830 3.1:+66535992 None:intergenic
ACATTCAGTCACCTGGCCCT+TGG 0.487414 3.1:+66539147 None:intergenic
GCCAAGGATATTGCTGTGAC+TGG 0.487743 3.1:-66537873 MS.gene70460:CDS
CTCATCTCTCGTACTGTCCT+AGG 0.490690 3.1:+66535938 None:intergenic
TCAGAGTTCTTTGCTTAAGG+TGG 0.492268 3.1:+66537580 None:intergenic
GTCCTAGGAGGCATCACATA+AGG 0.492669 3.1:+66535953 None:intergenic
TGTTCCTCATGCAGGTTCTC+GGG 0.496429 3.1:-66537992 MS.gene70460:intron
AACCTTATGTGATGCCTCCT+AGG 0.498050 3.1:-66535955 MS.gene70460:CDS
GCTTTGCGAATAACATCTGT+AGG 0.508354 3.1:+66537537 None:intergenic
GCATTAATCTTGATGGGCTC+CGG 0.515892 3.1:-66539186 MS.gene70460:CDS
GTGAGCACCCCTTTGGTGAT+CGG 0.517843 3.1:-66535985 MS.gene70460:CDS
CCCAGTCACAGCAATATCCT+TGG 0.518223 3.1:+66537872 None:intergenic
TTCTAGTGGCCGATCACCAA+AGG 0.519844 3.1:+66535976 None:intergenic
AGTAGTGGCATGTAGGTATG+TGG 0.527622 3.1:-66537604 MS.gene70460:intron
AATGTATGTAGGACAGGGAC+CGG 0.545065 3.1:-66536030 MS.gene70460:intron
TCTAGTGGCCGATCACCAAA+GGG 0.547147 3.1:+66535977 None:intergenic
AGCTACTGTAGTTATGGGAA+AGG 0.547157 3.1:-66537952 MS.gene70460:CDS
TTAAACGCATTAATCTTGAT+GGG 0.548352 3.1:-66539192 MS.gene70460:CDS
ATCATTGCACGCCTTGCTCG+TGG 0.552038 3.1:+66535914 None:intergenic
TGGCATCGAAAACCCGCCAC+CGG 0.554361 3.1:+66539167 None:intergenic
TCACGATTAGGAGTATAAGT+TGG 0.572405 3.1:+66537924 None:intergenic
TGACAGACAAGGTCTACTAC+TGG 0.574265 3.1:-66537842 MS.gene70460:CDS
AGGTCTACTACTGGCATACA+GGG 0.576841 3.1:-66537833 MS.gene70460:intron
GGTAAACTCCTTCAACCTCA+AGG 0.594941 3.1:-66539386 MS.gene70460:intron
CCTTAAGCAAAGAACTCTGA+AGG 0.596688 3.1:-66537577 MS.gene70460:CDS
CGGAAATTAAGGATCTTCCC+TGG 0.598071 3.1:-66536010 MS.gene70460:CDS
AAGAACTCTGAAGGATCAGA+TGG 0.606577 3.1:-66537568 MS.gene70460:CDS
TTAATCTTGATGGGCTCCGG+TGG 0.608778 3.1:-66539183 MS.gene70460:CDS
GTAGTGGCATGTAGGTATGT+GGG 0.612253 3.1:-66537603 MS.gene70460:intron
GGCATCACATAAGGTTCTAG+TGG 0.614175 3.1:+66535962 None:intergenic
CTTTGCGAATAACATCTGTA+GGG 0.616003 3.1:+66537538 None:intergenic
TCCTCATGCAGGTTCTCGGG+AGG 0.625821 3.1:-66537989 MS.gene70460:intron
TATACTCCTAATCGTGACGA+TGG 0.626802 3.1:-66537918 MS.gene70460:CDS
CCAAGGATATTGCTGTGACT+GGG 0.629076 3.1:-66537872 MS.gene70460:CDS
GAGAGATGAGACCACGAGCA+AGG 0.633625 3.1:-66535925 MS.gene70460:CDS
GTGCATTGTGCTTAATGCCA+AGG 0.638542 3.1:-66537889 MS.gene70460:CDS
AGGATATTGCTGTGACTGGG+AGG 0.647448 3.1:-66537869 MS.gene70460:CDS
TGGGAGGAAGCTGACAGACA+AGG 0.650353 3.1:-66537853 MS.gene70460:CDS
ATCTCTCGTACTGTCCTAGG+AGG 0.665987 3.1:+66535941 None:intergenic
CAAAGGGGTGCTCACTACCA+GGG 0.686267 3.1:+66535993 None:intergenic
TGAGCAGCGACAGAATGCTG+AGG 0.718134 3.1:-66535852 MS.gene70460:CDS
CTAGTGGCCGATCACCAAAG+GGG 0.770452 3.1:+66535978 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACTAATTAAAAAGAATA+AGG + chr3.1:66539114-66539133 None:intergenic 10.0%
!! TAAAATTATAAATACTACTT+TGG + chr3.1:66537448-66537467 None:intergenic 10.0%
!!! AAAAGTTTTTTAAGAAATTA+AGG + chr3.1:66538510-66538529 None:intergenic 10.0%
!!! AAAATACAAATTTTTAAATC+AGG - chr3.1:66538125-66538144 MS.gene70460:intron 10.0%
!!! AAAGTAGTATTTATAATTTT+AGG - chr3.1:66537447-66537466 MS.gene70460:intron 10.0%
!!! CTTTAAGTTTATTTTATTTT+AGG - chr3.1:66536782-66536801 MS.gene70460:intron 10.0%
!! AAGAATAAAAGAAAATAATG+AGG - chr3.1:66538225-66538244 MS.gene70460:intron 15.0%
!! ACATTAAAATCATAATTTCA+TGG + chr3.1:66536095-66536114 None:intergenic 15.0%
!! ATGAAAAAAAATAATCATTC+TGG + chr3.1:66537808-66537827 None:intergenic 15.0%
!! TATATAAAATAAAATTCACC+AGG - chr3.1:66538976-66538995 MS.gene70460:intron 15.0%
!! TATTTCATAAATAATGACAA+GGG + chr3.1:66535871-66535890 None:intergenic 15.0%
!!! AAAGTATTGAATTAAATTAC+TGG - chr3.1:66537779-66537798 MS.gene70460:intron 15.0%
!!! AAATTTTTCACAATTGTAAA+CGG - chr3.1:66538279-66538298 MS.gene70460:intron 15.0%
!!! ACATTTTGAAACAATTTATT+GGG - chr3.1:66537042-66537061 MS.gene70460:intron 15.0%
!!! TATAATTGTTGTTTTGTATA+TGG - chr3.1:66537539-66537558 MS.gene70460:CDS 15.0%
!!! TATTCTTTTGAATTGTAATT+TGG + chr3.1:66538212-66538231 None:intergenic 15.0%
!!! TGATTATTTTTTTTCATTGT+TGG - chr3.1:66537811-66537830 MS.gene70460:intron 15.0%
!! ATGAAAATATTAGAGAGATT+TGG - chr3.1:66536468-66536487 MS.gene70460:intron 20.0%
!! ATTTCATAAATAATGACAAG+GGG + chr3.1:66535870-66535889 None:intergenic 20.0%
!! CAAAACAACAATTATAAAAC+TGG + chr3.1:66537535-66537554 None:intergenic 20.0%
!! CTATTTCATAAATAATGACA+AGG + chr3.1:66535872-66535891 None:intergenic 20.0%
!! TGAAAATATTAGAGAGATTT+GGG - chr3.1:66536469-66536488 MS.gene70460:intron 20.0%
!!! GACATTTTGAAACAATTTAT+TGG - chr3.1:66537041-66537060 MS.gene70460:intron 20.0%
!!! TTGCCCAATTTTTTAAAATT+CGG - chr3.1:66538677-66538696 MS.gene70460:intron 20.0%
!!! TTGTTTCTTCTTTTTATCAT+AGG - chr3.1:66538869-66538888 MS.gene70460:intron 20.0%
!!! TTTTTCTATGGATTCTAAAA+TGG - chr3.1:66538373-66538392 MS.gene70460:intron 20.0%
!!! TTTTTTTTCTTTGAAGTATG+TGG - chr3.1:66536124-66536143 MS.gene70460:intron 20.0%
! AACAACAATTATAAAACTGG+AGG + chr3.1:66537532-66537551 None:intergenic 25.0%
! AAGTAATTAGTTACTTCTCT+TGG - chr3.1:66536988-66537007 MS.gene70460:intron 25.0%
! AGAATAAAATGCGAGATAAT+AGG - chr3.1:66536213-66536232 MS.gene70460:intron 25.0%
! ATAAGCTATAACAAGATGAA+AGG + chr3.1:66539090-66539109 None:intergenic 25.0%
! ATACTACTCAAGTTAAACAT+TGG + chr3.1:66538897-66538916 None:intergenic 25.0%
! ATCCATTCTAAACTGTAAAT+TGG - chr3.1:66538432-66538451 MS.gene70460:intron 25.0%
! ATGCAATATTGAAGAATTGA+TGG - chr3.1:66539132-66539151 MS.gene70460:intron 25.0%
! ATTAAACGCATTAATCTTGA+TGG - chr3.1:66536021-66536040 MS.gene70460:CDS 25.0%
! GAGATAATAGGTTTATGAAA+TGG - chr3.1:66536225-66536244 MS.gene70460:intron 25.0%
! GTATTGAATTAAATTACTGG+TGG - chr3.1:66537782-66537801 MS.gene70460:intron 25.0%
! TAGACTTGTAGAATATCTTA+TGG - chr3.1:66536166-66536185 MS.gene70460:intron 25.0%
! TAGGAATGTTAATTATGCTA+TGG + chr3.1:66538599-66538618 None:intergenic 25.0%
! TAGGCTTCTTATAAATCAAA+TGG - chr3.1:66537466-66537485 MS.gene70460:intron 25.0%
! TATAGTATTCACATCTGTAT+TGG + chr3.1:66536377-66536396 None:intergenic 25.0%
! TCCATTCTAAACTGTAAATT+GGG - chr3.1:66538433-66538452 MS.gene70460:intron 25.0%
! TGAAAAGTTATCCTCATAAT+AGG - chr3.1:66536862-66536881 MS.gene70460:intron 25.0%
! TTAAACGCATTAATCTTGAT+GGG - chr3.1:66536022-66536041 MS.gene70460:CDS 25.0%
! TTCGATTATGAAAGAAAGAA+GGG - chr3.1:66538929-66538948 MS.gene70460:intron 25.0%
! TTGAGCCATGAATTATTTAT+TGG - chr3.1:66537015-66537034 MS.gene70460:intron 25.0%
! TTTCGATTATGAAAGAAAGA+AGG - chr3.1:66538928-66538947 MS.gene70460:intron 25.0%
! TTTGTTACATTATTCAAGCA+AGG + chr3.1:66538558-66538577 None:intergenic 25.0%
!! AATTCTTCAAGTTCATCATT+AGG + chr3.1:66538618-66538637 None:intergenic 25.0%
!! ACTTTATAGACCAATGTTTT+TGG - chr3.1:66537743-66537762 MS.gene70460:intron 25.0%
!! CTTGAAGAATTACATTTTAG+AGG - chr3.1:66538627-66538646 MS.gene70460:intron 25.0%
!! GGTAAAATTTCTAAGAAGAT+AGG + chr3.1:66537511-66537530 None:intergenic 25.0%
!! GTTTTACATTTGTCCTTTTT+AGG - chr3.1:66536839-66536858 MS.gene70460:intron 25.0%
!! TGTTCGGAATTTTCTATTTT+TGG + chr3.1:66537871-66537890 None:intergenic 25.0%
!!! AAAAGCATTTCCAAAAACAT+TGG + chr3.1:66537756-66537775 None:intergenic 25.0%
!!! ATAGTTTCTCTAGTTTTTCT+AGG + chr3.1:66536630-66536649 None:intergenic 25.0%
!!! GGATACAACACATTTTAATT+AGG + chr3.1:66536816-66536835 None:intergenic 25.0%
!!! GTTAAAAATGGAGTCTTTTT+TGG - chr3.1:66535946-66535965 MS.gene70460:CDS 25.0%
!!! TATCTTATGGTTTTACGTTT+TGG - chr3.1:66536179-66536198 MS.gene70460:intron 25.0%
!!! TGCCCAATTTTTTAAAATTC+GGG - chr3.1:66538678-66538697 MS.gene70460:intron 25.0%
!!! TTAGGGTCTTTTGATTATTT+TGG + chr3.1:66538105-66538124 None:intergenic 25.0%
!!! TTCTATTTTTGGTCTCAAAT+AGG + chr3.1:66537860-66537879 None:intergenic 25.0%
AAAGGACAAATGTAAAACAG+TGG + chr3.1:66536837-66536856 None:intergenic 30.0%
AATTAGTTACTTCTCTTGGA+AGG - chr3.1:66536992-66537011 MS.gene70460:intron 30.0%
AATTGGCTATTCCTATTATG+AGG + chr3.1:66536876-66536895 None:intergenic 30.0%
ACTATTCTGACATAAAGTAG+TGG - chr3.1:66537595-66537614 MS.gene70460:intron 30.0%
AGCCATGAATTATTTATTGG+CGG - chr3.1:66537018-66537037 MS.gene70460:intron 30.0%
AGTAGCATTATAACAACTTG+TGG - chr3.1:66538050-66538069 MS.gene70460:intron 30.0%
ATTATTCAAGCAAGGTTTAC+CGG + chr3.1:66538550-66538569 None:intergenic 30.0%
CAAATAGCTACTGTAGTTAT+GGG - chr3.1:66537257-66537276 MS.gene70460:intron 30.0%
GAAAACAATTCTTGAGCAAT+AGG + chr3.1:66539039-66539058 None:intergenic 30.0%
GAAACAACAAATCATGAAGT+TGG + chr3.1:66538856-66538875 None:intergenic 30.0%
GCATTATTGCTAATGTATGT+AGG - chr3.1:66539173-66539192 MS.gene70460:CDS 30.0%
GTACTAGTTAAAGAACAGTA+AGG - chr3.1:66536295-66536314 MS.gene70460:intron 30.0%
GTCTAGATTATGAGTGAAAT+TGG + chr3.1:66536893-66536912 None:intergenic 30.0%
TACCATAAGAATCAAGTCTA+AGG - chr3.1:66537944-66537963 MS.gene70460:CDS 30.0%
TCAAATAGCTACTGTAGTTA+TGG - chr3.1:66537256-66537275 MS.gene70460:intron 30.0%
TCTTATAGTCTAACCCATAA+AGG - chr3.1:66538169-66538188 MS.gene70460:intron 30.0%
TGAATAATGCCAAAAGATTG+TGG + chr3.1:66537574-66537593 None:intergenic 30.0%
TGATAGAAACTAGACTTAAG+TGG - chr3.1:66536514-66536533 MS.gene70460:intron 30.0%
TGGAGAACAAAATTGAACTT+GGG - chr3.1:66537991-66538010 MS.gene70460:intron 30.0%
TTAGACTTGATTCTTATGGT+AGG + chr3.1:66537945-66537964 None:intergenic 30.0%
TTCATAAAATGTCCAAAGCT+CGG + chr3.1:66537114-66537133 None:intergenic 30.0%
TTCCTTAGACTTGATTCTTA+TGG + chr3.1:66537949-66537968 None:intergenic 30.0%
TTGCTCATATTAGATTGATG+TGG + chr3.1:66538484-66538503 None:intergenic 30.0%
TTTGAAAAATCCTTACCTTG+AGG + chr3.1:66535846-66535865 None:intergenic 30.0%
! GGATAACTTTTCACCTAAAA+AGG + chr3.1:66536855-66536874 None:intergenic 30.0%
! TTGTTATAATGCTACTTGCA+GGG + chr3.1:66538046-66538065 None:intergenic 30.0%
!! GCCCCGAATTTTAAAAAATT+GGG + chr3.1:66538683-66538702 None:intergenic 30.0%
!! TGCCCCGAATTTTAAAAAAT+TGG + chr3.1:66538684-66538703 None:intergenic 30.0%
!! TGTTCTGGGTTAGTTAAAAA+TGG - chr3.1:66535934-66535953 MS.gene70460:CDS 30.0%
!!! ACATCACGTAAGTTGTTTTT+AGG + chr3.1:66537719-66537738 None:intergenic 30.0%
!!! CACTGTTTTGAAAAACCATT+AGG + chr3.1:66538023-66538042 None:intergenic 30.0%
!!! GCCCAATTTTTTAAAATTCG+GGG - chr3.1:66538679-66538698 MS.gene70460:intron 30.0%
AACAAAATTGAACTTGGGGT+AGG - chr3.1:66537996-66538015 MS.gene70460:intron 35.0%
AACTATTCATCCTATGTTGC+TGG - chr3.1:66538332-66538351 MS.gene70460:intron 35.0%
AAGTTCAACAGAGTCATTAG+AGG + chr3.1:66538403-66538422 None:intergenic 35.0%
AATAACATCTGTAGGGTCTT+TGG + chr3.1:66537672-66537691 None:intergenic 35.0%
AATGATTCGAGCACAGAAAA+AGG - chr3.1:66539317-66539336 MS.gene70460:intron 35.0%
AATTGTAATTTGGCCCCAAA+TGG + chr3.1:66538202-66538221 None:intergenic 35.0%
ACTTAAGTGGTTTATGCATG+TGG - chr3.1:66536527-66536546 MS.gene70460:intron 35.0%
AGATCTAGAGATCAATGAGA+TGG - chr3.1:66536656-66536675 MS.gene70460:intron 35.0%
ATGCCTGTGTCTATATTGAA+TGG - chr3.1:66536425-66536444 MS.gene70460:intron 35.0%
ATTGCTAATGTATGTAGGAC+AGG - chr3.1:66539178-66539197 MS.gene70460:CDS 35.0%
CAATGAGATGGAGAAAGATA+TGG - chr3.1:66536668-66536687 MS.gene70460:intron 35.0%
CAGTATGAAATGAGATCGTA+AGG - chr3.1:66537889-66537908 MS.gene70460:CDS 35.0%
CGATCTCATTTCATACTGTT+CGG + chr3.1:66537887-66537906 None:intergenic 35.0%
CTTTGCGAATAACATCTGTA+GGG + chr3.1:66537679-66537698 None:intergenic 35.0%
GCCATGAATTATTTATTGGC+GGG - chr3.1:66537019-66537038 MS.gene70460:intron 35.0%
GCCCAATTTACAGTTTAGAA+TGG + chr3.1:66538437-66538456 None:intergenic 35.0%
GGAGAACAAAATTGAACTTG+GGG - chr3.1:66537992-66538011 MS.gene70460:intron 35.0%
GTGGAGAACAAAATTGAACT+TGG - chr3.1:66537990-66538009 MS.gene70460:intron 35.0%
TCATAAAATGTCCAAAGCTC+GGG + chr3.1:66537113-66537132 None:intergenic 35.0%
TCATGTAGGGGAATAAGATT+TGG - chr3.1:66536722-66536741 MS.gene70460:intron 35.0%
TCCCGCCAATAAATAATTCA+TGG + chr3.1:66537023-66537042 None:intergenic 35.0%
TCTCCCTAAAAACTTTCACT+TGG + chr3.1:66538653-66538672 None:intergenic 35.0%
TTGATGTGGAATGATGAAAG+TGG + chr3.1:66538470-66538489 None:intergenic 35.0%
TTGCTAATGTATGTAGGACA+GGG - chr3.1:66539179-66539198 MS.gene70460:CDS 35.0%
! AGGCCAAGTGAAAGTTTTTA+GGG - chr3.1:66538647-66538666 MS.gene70460:intron 35.0%
! GATGTTGATGTTGTCTCTTT+TGG - chr3.1:66536747-66536766 MS.gene70460:intron 35.0%
! GTGAAAATGCAACTTGTTCT+GGG - chr3.1:66535920-66535939 MS.gene70460:CDS 35.0%
! GTTGCATTTTCACAAACACT+TGG + chr3.1:66535913-66535932 None:intergenic 35.0%
! GTTGTTATAATGCTACTTGC+AGG + chr3.1:66538047-66538066 None:intergenic 35.0%
! GTTTTTGTGTTTTCAGAGAG+CGG - chr3.1:66535990-66536009 MS.gene70460:CDS 35.0%
! TATGAAAGAAAGAAGGGCAT+TGG - chr3.1:66538935-66538954 MS.gene70460:intron 35.0%
! TCACGATTAGGAGTATAAGT+TGG + chr3.1:66537293-66537312 None:intergenic 35.0%
! TGATGTTGTCTCTTTTGGTA+AGG - chr3.1:66536752-66536771 MS.gene70460:intron 35.0%
! TGTGAAAATGCAACTTGTTC+TGG - chr3.1:66535919-66535938 MS.gene70460:CDS 35.0%
! TTTCTTGTGCCACAATCTTT+TGG - chr3.1:66537562-66537581 MS.gene70460:CDS 35.0%
!! ATGAAAGAAAGAAGGGCATT+GGG - chr3.1:66538936-66538955 MS.gene70460:intron 35.0%
!! ATGAACTTTTGTTTAGCGTC+TGG - chr3.1:66537129-66537148 MS.gene70460:intron 35.0%
!! TCTCTTGACTCGTTTTTCTA+TGG - chr3.1:66538361-66538380 MS.gene70460:intron 35.0%
AAATGGTCATGGGCCTTTAT+GGG + chr3.1:66538185-66538204 None:intergenic 40.0%
AAGCCAATCAGCCAAATGTT+TGG + chr3.1:66536261-66536280 None:intergenic 40.0%
AATCCTTACCTTGAGGTTGA+AGG + chr3.1:66535839-66535858 None:intergenic 40.0%
ACGCCATTCAATATAGACAC+AGG + chr3.1:66536431-66536450 None:intergenic 40.0%
ACGTCGTTTGATTCATGTAG+GGG - chr3.1:66536710-66536729 MS.gene70460:intron 40.0%
AGCCAATCAGCCAAATGTTT+GGG + chr3.1:66536260-66536279 None:intergenic 40.0%
AGCTACTGTAGTTATGGGAA+AGG - chr3.1:66537262-66537281 MS.gene70460:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG - chr3.1:66536572-66536591 MS.gene70460:intron 40.0%
AGTCTAAGGAAAGTGACTTG+AGG - chr3.1:66537958-66537977 MS.gene70460:CDS 40.0%
ATAAAGGCCCATGACCATTT+GGG - chr3.1:66538185-66538204 MS.gene70460:intron 40.0%
ATATCTCCATCGTCACGATT+AGG + chr3.1:66537305-66537324 None:intergenic 40.0%
CAACAAATCATGAAGTTGGC+TGG + chr3.1:66538852-66538871 None:intergenic 40.0%
CAGCCAAATGTTTGGGAAAT+GGG + chr3.1:66536253-66536272 None:intergenic 40.0%
CAGGGAAGATCCTTAATTTC+CGG + chr3.1:66539206-66539225 None:intergenic 40.0%
CCATTCTACGTCATCACAAA+AGG + chr3.1:66538716-66538735 None:intergenic 40.0%
CCTTAAGCAAAGAACTCTGA+AGG - chr3.1:66537637-66537656 MS.gene70460:intron 40.0%
CCTTCAGAGTTCTTTGCTTA+AGG + chr3.1:66537640-66537659 None:intergenic 40.0%
GACATAAAGTAGTGGCATGT+AGG - chr3.1:66537603-66537622 MS.gene70460:intron 40.0%
GACGTCGTTTGATTCATGTA+GGG - chr3.1:66536709-66536728 MS.gene70460:intron 40.0%
GAGATTTACTCCAGCAACAT+AGG + chr3.1:66538345-66538364 None:intergenic 40.0%
GATTCATATGTTCCTCATGC+AGG - chr3.1:66537214-66537233 MS.gene70460:intron 40.0%
GCACATGTATGAAAATGACC+TGG + chr3.1:66538997-66539016 None:intergenic 40.0%
GCTTTGCGAATAACATCTGT+AGG + chr3.1:66537680-66537699 None:intergenic 40.0%
GTCTAAGGAAAGTGACTTGA+GGG - chr3.1:66537959-66537978 MS.gene70460:CDS 40.0%
GTTCCCATTTCCCAAACATT+TGG - chr3.1:66536247-66536266 MS.gene70460:intron 40.0%
TATACTCCTAATCGTGACGA+TGG - chr3.1:66537296-66537315 MS.gene70460:intron 40.0%
TCAGAGTTCTTTGCTTAAGG+TGG + chr3.1:66537637-66537656 None:intergenic 40.0%
TCAGCCAAATGTTTGGGAAA+TGG + chr3.1:66536254-66536273 None:intergenic 40.0%
TCATACATGTGCAGAGATGA+AGG - chr3.1:66539005-66539024 MS.gene70460:intron 40.0%
TCCTGTAGCTGGACATTAAT+TGG + chr3.1:66538756-66538775 None:intergenic 40.0%
TGACGTCGTTTGATTCATGT+AGG - chr3.1:66536708-66536727 MS.gene70460:intron 40.0%
TGTCTCGTAAACGAAATAGC+TGG + chr3.1:66538309-66538328 None:intergenic 40.0%
TTAATGTCCAGCTACAGGAA+TGG - chr3.1:66538757-66538776 MS.gene70460:intron 40.0%
TTCACCACCAAAACTTTCAC+CGG - chr3.1:66538528-66538547 MS.gene70460:intron 40.0%
TTCCCAAACATTTGGCTGAT+TGG - chr3.1:66536255-66536274 MS.gene70460:intron 40.0%
! AAGAACTCTGAAGGATCAGA+TGG - chr3.1:66537646-66537665 MS.gene70460:intron 40.0%
! AGGTTTACCGGTGAAAGTTT+TGG + chr3.1:66538538-66538557 None:intergenic 40.0%
! AGTTTAGAATGGATGACAGC+AGG + chr3.1:66538426-66538445 None:intergenic 40.0%
! GAGGCCAAGTGAAAGTTTTT+AGG - chr3.1:66538646-66538665 MS.gene70460:intron 40.0%
!! CCTTTTGTGATGACGTAGAA+TGG - chr3.1:66538713-66538732 MS.gene70460:intron 40.0%
!! TGAAAGAAAGAAGGGCATTG+GGG - chr3.1:66538937-66538956 MS.gene70460:intron 40.0%
!! TGACTTGAGGGTATCTTTAG+TGG - chr3.1:66537971-66537990 MS.gene70460:CDS 40.0%
!! TTTACCGGTGAAAGTTTTGG+TGG + chr3.1:66538535-66538554 None:intergenic 40.0%
AACCTTATGTGATGCCTCCT+AGG - chr3.1:66539259-66539278 MS.gene70460:intron 45.0%
AAGGTCTACTACTGGCATAC+AGG - chr3.1:66537380-66537399 MS.gene70460:intron 45.0%
AATGTATGTAGGACAGGGAC+CGG - chr3.1:66539184-66539203 MS.gene70460:CDS 45.0%
AATTTGGCCCCAAATGGTCA+TGG + chr3.1:66538196-66538215 None:intergenic 45.0%
ACATGTTCAGCTCATGTTGG+AGG + chr3.1:66538791-66538810 None:intergenic 45.0%
ACCGTATCTGTGTCGGATTT+GGG + chr3.1:66536351-66536370 None:intergenic 45.0%
ACGTCATCACAAAAGGCTTG+TGG + chr3.1:66538709-66538728 None:intergenic 45.0%
ACTCCTTCAACCTCAAGGTA+AGG - chr3.1:66535833-66535852 MS.gene70460:CDS 45.0%
AGGAGAGTAGATCAGATGGA+AGG - chr3.1:66536576-66536595 MS.gene70460:intron 45.0%
AGGCAAATCACTAGAGGTAG+GGG - chr3.1:66536600-66536619 MS.gene70460:intron 45.0%
AGGTCTACTACTGGCATACA+GGG - chr3.1:66537381-66537400 MS.gene70460:intron 45.0%
AGTAGTGGCATGTAGGTATG+TGG - chr3.1:66537610-66537629 MS.gene70460:intron 45.0%
ATGTTCCTCATGCAGGTTCT+CGG - chr3.1:66537221-66537240 MS.gene70460:intron 45.0%
ATTTGGCCCCAAATGGTCAT+GGG + chr3.1:66538195-66538214 None:intergenic 45.0%
CAAATGGTCATGGGCCTTTA+TGG + chr3.1:66538186-66538205 None:intergenic 45.0%
CATAAAGGCCCATGACCATT+TGG - chr3.1:66538184-66538203 MS.gene70460:intron 45.0%
CCAAGGATATTGCTGTGACT+GGG - chr3.1:66537342-66537361 MS.gene70460:intron 45.0%
CGGAAATTAAGGATCTTCCC+TGG - chr3.1:66539204-66539223 MS.gene70460:CDS 45.0%
CGTCATCACAAAAGGCTTGT+GGG + chr3.1:66538708-66538727 None:intergenic 45.0%
CTTATGGTAGGAAGCAGTTC+TGG + chr3.1:66537933-66537952 None:intergenic 45.0%
GAGGCAAATCACTAGAGGTA+GGG - chr3.1:66536599-66536618 MS.gene70460:intron 45.0%
GCATGTGGATAGAAGTCATG+TGG - chr3.1:66536542-66536561 MS.gene70460:intron 45.0%
GCCAATTAATGTCCAGCTAC+AGG - chr3.1:66538752-66538771 MS.gene70460:intron 45.0%
GGAGAGTAGATCAGATGGAA+GGG - chr3.1:66536577-66536596 MS.gene70460:intron 45.0%
GGATAGAAGTCATGTGGATG+TGG - chr3.1:66536548-66536567 MS.gene70460:intron 45.0%
GGTAAACTCCTTCAACCTCA+AGG - chr3.1:66535828-66535847 MS.gene70460:CDS 45.0%
GTAGCTGGACATTAATTGGC+AGG + chr3.1:66538752-66538771 None:intergenic 45.0%
GTAGTGGCATGTAGGTATGT+GGG - chr3.1:66537611-66537630 MS.gene70460:intron 45.0%
GTCATGTGGATGTGGTAGTA+AGG - chr3.1:66536556-66536575 MS.gene70460:intron 45.0%
GTGACATGTTCAGCTCATGT+TGG + chr3.1:66538794-66538813 None:intergenic 45.0%
GTGCATTGTGCTTAATGCCA+AGG - chr3.1:66537325-66537344 MS.gene70460:intron 45.0%
TAAAGGCCCATGACCATTTG+GGG - chr3.1:66538186-66538205 MS.gene70460:intron 45.0%
TCCCAAATCCGACACAGATA+CGG - chr3.1:66536347-66536366 MS.gene70460:intron 45.0%
TGACAGACAAGGTCTACTAC+TGG - chr3.1:66537372-66537391 MS.gene70460:intron 45.0%
TGTAGAAGATTCCCGAGCTT+TGG - chr3.1:66537099-66537118 MS.gene70460:intron 45.0%
TTGGTAGACCGTATCTGTGT+CGG + chr3.1:66536358-66536377 None:intergenic 45.0%
TTTGTTTAGCGTCTGGACTC+TGG - chr3.1:66537136-66537155 MS.gene70460:intron 45.0%
! GGCATCACATAAGGTTCTAG+TGG + chr3.1:66539255-66539274 None:intergenic 45.0%
!! GCATTAATCTTGATGGGCTC+CGG - chr3.1:66536028-66536047 MS.gene70460:intron 45.0%
!!! TTAAAAATTTGTATTTTTTA+GGG + chr3.1:66538122-66538141 None:intergenic 5.0%
!!! TTTAAAAATTTGTATTTTTT+AGG + chr3.1:66538123-66538142 None:intergenic 5.0%
AGGACAGGGACCGGAAATTA+AGG - chr3.1:66539193-66539212 MS.gene70460:CDS 50.0%
AGGATATTGCTGTGACTGGG+AGG - chr3.1:66537345-66537364 MS.gene70460:intron 50.0%
ATCTCTCGTACTGTCCTAGG+AGG + chr3.1:66539276-66539295 None:intergenic 50.0%
CAGCTACAGGAATGGAATCG+CGG - chr3.1:66538765-66538784 MS.gene70460:intron 50.0%
CATGGTCACATTCAGTCACC+TGG + chr3.1:66536077-66536096 None:intergenic 50.0%
CCCAGTCACAGCAATATCCT+TGG + chr3.1:66537345-66537364 None:intergenic 50.0%
CTCATCTCTCGTACTGTCCT+AGG + chr3.1:66539279-66539298 None:intergenic 50.0%
GAACTTGGGGTAGGACCTAA+TGG - chr3.1:66538005-66538024 MS.gene70460:intron 50.0%
GAAGGGAGGCAAATCACTAG+AGG - chr3.1:66536594-66536613 MS.gene70460:intron 50.0%
GACCGTATCTGTGTCGGATT+TGG + chr3.1:66536352-66536371 None:intergenic 50.0%
GAGTAGATCAGATGGAAGGG+AGG - chr3.1:66536580-66536599 MS.gene70460:intron 50.0%
GCCAAGGATATTGCTGTGAC+TGG - chr3.1:66537341-66537360 MS.gene70460:intron 50.0%
GGAGGCAAATCACTAGAGGT+AGG - chr3.1:66536598-66536617 MS.gene70460:intron 50.0%
TCTAGTGGCCGATCACCAAA+GGG + chr3.1:66539240-66539259 None:intergenic 50.0%
TGTTCCTCATGCAGGTTCTC+GGG - chr3.1:66537222-66537241 MS.gene70460:intron 50.0%
TTCTAGTGGCCGATCACCAA+AGG + chr3.1:66539241-66539260 None:intergenic 50.0%
!! GTCCTAGGAGGCATCACATA+AGG + chr3.1:66539264-66539283 None:intergenic 50.0%
!! TTAATCTTGATGGGCTCCGG+TGG - chr3.1:66536031-66536050 MS.gene70460:intron 50.0%
ACATTCAGTCACCTGGCCCT+TGG + chr3.1:66536070-66536089 None:intergenic 55.0%
ATCATTGCACGCCTTGCTCG+TGG + chr3.1:66539303-66539322 None:intergenic 55.0%
CGCGATTCCATTCCTGTAGC+TGG + chr3.1:66538767-66538786 None:intergenic 55.0%
CTAGTGGCCGATCACCAAAG+GGG + chr3.1:66539239-66539258 None:intergenic 55.0%
GAGAGATGAGACCACGAGCA+AGG - chr3.1:66539289-66539308 MS.gene70460:intron 55.0%
TGAGCAGCGACAGAATGCTG+AGG - chr3.1:66539362-66539381 MS.gene70460:intron 55.0%
TGGGAGGAAGCTGACAGACA+AGG - chr3.1:66537361-66537380 MS.gene70460:intron 55.0%
! GTGAGCACCCCTTTGGTGAT+CGG - chr3.1:66539229-66539248 MS.gene70460:intron 55.0%
! TGTTTTCAGAGAGCGGCAGC+TGG - chr3.1:66535997-66536016 MS.gene70460:CDS 55.0%
!! CAAAGGGGTGCTCACTACCA+GGG + chr3.1:66539224-66539243 None:intergenic 55.0%
!!! TGGCGGGTTTTCGATGCCAA+GGG - chr3.1:66536051-66536070 MS.gene70460:intron 55.0%
ACCTCCCGAGAACCTGCATG+AGG + chr3.1:66537229-66537248 None:intergenic 60.0%
TCCTCATGCAGGTTCTCGGG+AGG - chr3.1:66537225-66537244 MS.gene70460:intron 60.0%
! CCTGGTAGTGAGCACCCCTT+TGG - chr3.1:66539222-66539241 MS.gene70460:intron 60.0%
! GGTTTTCGATGCCAAGGGCC+AGG - chr3.1:66536056-66536075 MS.gene70460:intron 60.0%
! TGGCATCGAAAACCCGCCAC+CGG + chr3.1:66536050-66536069 None:intergenic 60.0%
!! ATCTTGATGGGCTCCGGTGG+CGG - chr3.1:66536034-66536053 MS.gene70460:intron 60.0%
!! CCAAAGGGGTGCTCACTACC+AGG + chr3.1:66539225-66539244 None:intergenic 60.0%
!!! GTGGCGGGTTTTCGATGCCA+AGG - chr3.1:66536050-66536069 MS.gene70460:intron 60.0%
!! TCTTGATGGGCTCCGGTGGC+GGG - chr3.1:66536035-66536054 MS.gene70460:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 66535820 66539416 66535820 ID=MS.gene70460
chr3.1 mRNA 66535820 66539416 66535820 ID=MS.gene70460.t1;Parent=MS.gene70460
chr3.1 exon 66539387 66539416 66539387 ID=MS.gene70460.t1.exon1;Parent=MS.gene70460.t1
chr3.1 CDS 66539387 66539416 66539387 ID=cds.MS.gene70460.t1;Parent=MS.gene70460.t1
chr3.1 exon 66539159 66539230 66539159 ID=MS.gene70460.t1.exon2;Parent=MS.gene70460.t1
chr3.1 CDS 66539159 66539230 66539159 ID=cds.MS.gene70460.t1;Parent=MS.gene70460.t1
chr3.1 exon 66537834 66538000 66537834 ID=MS.gene70460.t1.exon3;Parent=MS.gene70460.t1
chr3.1 CDS 66537834 66538000 66537834 ID=cds.MS.gene70460.t1;Parent=MS.gene70460.t1
chr3.1 exon 66537500 66537611 66537500 ID=MS.gene70460.t1.exon4;Parent=MS.gene70460.t1
chr3.1 CDS 66537500 66537611 66537500 ID=cds.MS.gene70460.t1;Parent=MS.gene70460.t1
chr3.1 exon 66535820 66536041 66535820 ID=MS.gene70460.t1.exon5;Parent=MS.gene70460.t1
chr3.1 CDS 66535820 66536041 66535820 ID=cds.MS.gene70460.t1;Parent=MS.gene70460.t1
Gene Sequence

>MS.gene70460

ATGAAGATGGTAAACTCCTTCAACCTCAAGGTAAGGATTTTTCAAAACCCCTTGTCATTATTTATGAAATAGTTTGTTCAAATATGCATGCCAAGTGTTTGTGAAAATGCAACTTGTTCTGGGTTAGTTAAAAATGGAGTCTTTTTTGGAATTGTATTGTAAAAGATGTTGTTTTTGTGTTTTCAGAGAGCGGCAGCTGGAATTAAACGCATTAATCTTGATGGGCTCCGGTGGCGGGTTTTCGATGCCAAGGGCCAGGTGACTGAATGTGACCATGAAATTATGATTTTAATGTAAAATGTTTTTTTTTTTCTTTGAAGTATGTGGTTTTAGAGTAAGCTTCTGCTAGACTTGTAGAATATCTTATGGTTTTACGTTTTGGATCTTGAGAAAAGAATAAAATGCGAGATAATAGGTTTATGAAATGGTTCCCATTTCCCAAACATTTGGCTGATTGGCTTGCATATCATGTAGTGTACTAGTTAAAGAACAGTAAGGAAGTAGAAACACTTTAAAATAGTAGTTGTTCCCAAATCCGACACAGATACGGTCTACCAATACAGATGTGAATACTATAATAATTATATAAATTATAACATTTTATTATGCCTGTGTCTATATTGAATGGCGTTCACTTTTTAATTAGAAATGAAAATATTAGAGAGATTTGGGATAGCACTTATAGTAGAAAAGATGATAGAAACTAGACTTAAGTGGTTTATGCATGTGGATAGAAGTCATGTGGATGTGGTAGTAAGGAGAGTAGATCAGATGGAAGGGAGGCAAATCACTAGAGGTAGGGGAAGACCTAGAAAAACTAGAGAAACTATCAAGAAAGATCTAGAGATCAATGAGATGGAGAAAGATATGGTTTTTGATAGAACACTATGACGTCGTTTGATTCATGTAGGGGAATAAGATTTGGTTGATGTTGATGTTGTCTCTTTTGGTAAGGATTTGTACTTTAAGTTTATTTTATTTTAGGCATCTTCTCCTAATTAAAATGTGTTGTATCCACTGTTTTACATTTGTCCTTTTTAGGTGAAAAGTTATCCTCATAATAGGAATAGCCAATTTCACTCATAATCTAGACTGAATTTAAATCTCTTGCATTATCTAGTTCTTCAGCGCATTCATATGAGAACATATATTTTATCTAAATCATCATAAGTAATTAGTTACTTCTCTTGGAAGGTTGAGCCATGAATTATTTATTGGCGGGACATTTTGAAACAATTTATTGGGTGAATTATTTGTAAGCACGTGCTATTTGAGATCATGTAGAAGATTCCCGAGCTTTGGACATTTTATGAACTTTTGTTTAGCGTCTGGACTCTGGATTGTGATCAACTACTGAGTGATTCACTAATTTGAAGTCATAAGATCATTTTGCTGATTCATATGTTCCTCATGCAGGTTCTCGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTATGGGAAAGGATAAGCCAACTTATACTCCTAATCGTGACGATGGAGATATGTGCATTGTGCTTAATGCCAAGGATATTGCTGTGACTGGGAGGAAGCTGACAGACAAGGTCTACTACTGGCATACAGGGCACGTTCTTTGCATTACTTCATTTAATACATTTTGTTAGAACCAAAGTAGTATTTATAATTTTAGGCTTCTTATAAATCAAATGGTTTTATTCAGATTTAAATGCCTATCTTCTTAGAAATTTTACCTCCAGTTTTATAATTGTTGTTTTGTATATGGTTTCTTGTGCCACAATCTTTTGGCATTATTCATACTATTCTGACATAAAGTAGTGGCATGTAGGTATGTGGGCCACCTTAAGCAAAGAACTCTGAAGGATCAGATGGCCAAAGACCCTACAGATGTTATTCGCAAAGCTATTCTGCGCATGATTCCTAAAAACAACTTACGTGATGTAAGTACTTTATAGACCAATGTTTTTGGAAATGCTTTTAACAAAGTATTGAATTAAATTACTGGTGGCCAGAATGATTATTTTTTTTCATTGTTGGTTTAAATTTTGCTATAGTAGAGTCCTATTTGAGACCAAAAATAGAAAATTCCGAACAGTATGAAATGAGATCGTAAGGATGTTTGATTTATGATTTCCAGAACTGCTTCCTACCATAAGAATCAAGTCTAAGGAAAGTGACTTGAGGGTATCTTTAGTGGAGAACAAAATTGAACTTGGGGTAGGACCTAATGGTTTTTCAAAACAGTGCCCTGCAAGTAGCATTATAACAACTTGTGGATTTCTAAAATATCTCTACAATTATACTTCCAAAATAATCAAAAGACCCTAAAAAATACAAATTTTTAAATCAGGTTCAAATCTTTACAATATATTTCTTATAGTCTAACCCATAAAGGCCCATGACCATTTGGGGCCAAATTACAATTCAAAAGAATAAAAGAAAATAATGAGGACAGTGTCAAATTTTTCTCTGTAAGAATCTCAAATTTTTCACAATTGTAAACGGTAATCCAGCTATTTCGTTTACGAGACAGAGAACTATTCATCCTATGTTGCTGGAGTAAATCTCTTGACTCGTTTTTCTATGGATTCTAAAATGGCAGTCCTCTAATGACTCTGTTGAACTTCCTGCTGTCATCCATTCTAAACTGTAAATTGGGCAACAAAAAATCCACTTTCATCATTCCACATCAATCTAATATGAGCAAGTACCTTAATTTCTTAAAAAACTTTTCACCACCAAAACTTTCACCGGTAAACCTTGCTTGAATAATGTAACAAAGTAAGAGTGAGTATATGTCCATAGCATAATTAACATTCCTAATGATGAACTTGAAGAATTACATTTTAGAGGCCAAGTGAAAGTTTTTAGGGAGAGTAGTTGCCCAATTTTTTAAAATTCGGGGCATCCCACAAGCCTTTTGTGATGACGTAGAATGGTACTAGTCAATGTCCTGCCAATTAATGTCCAGCTACAGGAATGGAATCGCGGCCTCCAACATGAGCTGAACATGTCACTTTTTTGTTGTTCGATCTACTAGTTGTGTCAAATGCCAGCCAACTTCATGATTTGTTGTTTCTTCTTTTTATCATAGGATCCAATGTTTAACTTGAGTAGTATTTCGCTAGCACTTTCGATTATGAAAGAAAGAAGGGCATTGGGGAACAGTGATATCAATGTATATAAAATAAAATTCACCAGGTCATTTTCATACATGTGCAGAGATGAAGGTTCAACGACCTATTGCTCAAGAATTGTTTTCTTCATAGCTATGATTTTCAATTATTCTTCCTTTCATCTTGTTATAGCTTATTCCTTATTCTTTTTAATTAGTTATGCAATATTGAAGAATTGATGGTCTAAGTTGCATTTTCTTGCATTATTGCTAATGTATGTAGGACAGGGACCGGAAATTAAGGATCTTCCCTGGTAGTGAGCACCCCTTTGGTGATCGGCCACTAGAACCTTATGTGATGCCTCCTAGGACAGTACGAGAGATGAGACCACGAGCAAGGCGTGCAATGATTCGAGCACAGAAAAAGGCAGAGCAGCAACAAGAGAATGCTGAGCAGCGACAGAATGCTGAGGAAATGAAGAATAGCAAAAAGAGTGAAGCATAG

Protein sequence

>MS.gene70460.t1

MKMVNSFNLKRAAAGIKRINLDGLRWRVFDAKGQVLGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVYYWHTGYVGHLKQRTLKDQMAKDPTDVIRKAILRMIPKNNLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENAEQRQNAEEMKNSKKSEA