AlfalfaGEDB | MS.gene71178

M. sativa cultivar XinJiangDaYe / MS.gene71178

KEGG: -
GO: -
PFAM: PF04935.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71178.t1	KEH38713.1	61	187	63	2	5	191	49	225	1.60E-40	176

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71178.t1	A0A072VB89	61.0	187	63	2	5	191	49	225	1.2e-40	176.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene71178	0.802432	5.63E-49	-1.69E-46
MS.gene050227	MS.gene71178	0.806298	8.80E-50	-1.69E-46
MS.gene050228	MS.gene71178	0.807255	5.53E-50	-1.69E-46
MS.gene050303	MS.gene71178	0.802046	6.76E-49	-1.69E-46
MS.gene050330	MS.gene71178	-0.806097	9.70E-50	-1.69E-46
MS.gene050442	MS.gene71178	0.805516	1.29E-49	-1.69E-46
MS.gene050719	MS.gene71178	0.816001	6.92E-52	-1.69E-46
MS.gene050721	MS.gene71178	0.814376	1.59E-51	-1.69E-46
MS.gene050724	MS.gene71178	0.805333	1.40E-49	-1.69E-46
MS.gene050824	MS.gene71178	0.802805	4.71E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71178.t1	MTR_2g079000	79.021	143	28	1	49	191	85	225	2.24e-68	208
MS.gene71178.t1	MTR_5g012820	61.929	197	48	4	10	179	109	305	2.42e-65	204
MS.gene71178.t1	MTR_5g012820	61.929	197	48	4	10	179	119	315	4.75e-65	204
MS.gene71178.t1	MTR_2g079040	87.500	40	5	0	133	172	1	40	7.42e-16	71.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71178.t1	AT5G05210	46.078	204	78	6	1	179	144	340	1.25e-41	144
MS.gene71178.t1	AT5G05210	46.078	204	78	6	1	179	136	332	1.25e-41	144
MS.gene71178.t1	AT2G27750	37.356	174	75	6	12	179	3	148	5.84e-21	85.9

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Find 44 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGAAGAGTTTCAGTC+AGG	0.526291	2.4:+19328893	MS.gene71178:CDS
AAGAAAGATAGAGTTTCCGG+AGG	0.655190	2.4:+19328958	MS.gene71178:CDS
AAGAAGAATGATCCTGAGAA+GGG	0.591026	2.4:+19329121	MS.gene71178:CDS
AATGAATGACAGCGATGGAG+AGG	0.585376	2.4:+19328784	None:intergenic
AATGACAGCGATGGAGAGGA+AGG	0.580649	2.4:+19328788	MS.gene71178:CDS
AGAGTTTCCGGAGGAGAAGG+TGG	0.570130	2.4:+19328967	MS.gene71178:CDS
AGCAGAAAATCGCAGTGAAA+TGG	0.374864	2.4:+19329260	MS.gene71178:CDS
AGCAGCAATGAATAGAGCTT+CGG	0.425070	2.4:+19329174	MS.gene71178:CDS
AGGGTTCAAAGTTCAAACAA+AGG	0.644899	2.4:+19329289	MS.gene71178:CDS
AGGTCCTAACTGTGCAAATC+TGG	0.332531	2.4:+19328913	MS.gene71178:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTGGAAAATGCTAATAAG+AGG	+	chr2.4:19328930-19328949	MS.gene71178:CDS	30.0%
GTATACAGAAATGGAAGAAT+AGG	+	chr2.4:19329236-19329255	MS.gene71178:CDS	30.0%
TCTGGAAAATGCTAATAAGA+GGG	+	chr2.4:19328931-19328950	MS.gene71178:CDS	30.0%
TGAAAGAAAGATAGAGTTTC+CGG	+	chr2.4:19328955-19328974	MS.gene71178:CDS	30.0%
AAACTTGAAGAGTTTCAGTC+AGG	+	chr2.4:19328893-19328912	MS.gene71178:CDS	35.0%
AAGAAGAATGATCCTGAGAA+GGG	+	chr2.4:19329121-19329140	MS.gene71178:CDS	35.0%
AGGCAGAGAAACAACAAAAA+AGG	+	chr2.4:19329321-19329340	MS.gene71178:CDS	35.0%
AGGGTTCAAAGTTCAAACAA+AGG	+	chr2.4:19329289-19329308	MS.gene71178:CDS	35.0%
CTATTGCTAAAAAGGAAGCA+TGG	+	chr2.4:19329149-19329168	MS.gene71178:CDS	35.0%
GGCAATGTTAAACTTCAGAA+TGG	+	chr2.4:19329028-19329047	MS.gene71178:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	19328785	19329360	19328785	ID=MS.gene71178
chr2.4	mRNA	19328785	19329360	19328785	ID=MS.gene71178.t1;Parent=MS.gene71178
chr2.4	exon	19328785	19329360	19328785	ID=MS.gene71178.t1.exon1;Parent=MS.gene71178.t1
chr2.4	CDS	19328785	19329360	19328785	ID=cds.MS.gene71178.t1;Parent=MS.gene71178.t1

Gene Sequence

>MS.gene71178

ATGAATGACAGCGATGGAGAGGAAGGTGCAGTTAAGCCTTTCATGTCGGGGTTGGAAGCAGATGATCGGTTTGCGACCTTTGAAGAACTACGCGAAAGGCTTCATCGCAAACTTGAAGAGTTTCAGTCAGGTCCTAACTGTGCAAATCTGGAAAATGCTAATAAGAGGGATGAAAGAAAGATAGAGTTTCCGGAGGAGAAGGTGGTAAAGGAGGCCACAGAGTCTTTAAAAGAGCTTGTGTTTGGCAATGTTAAACTTCAGAATGGTGAAATGCAAGGGAAGAGAAAAGTTTCCAAGCACAAGGAACTTGAAAGAGCTAAGAAGTTAGAGGAAGTGAAGAAGAATGATCCTGAGAAGGGTGAAGCTATTGCTAAAAAGGAAGCATGGAAAGCAGCAATGAATAGAGCTTCGGGAATCAAGGTTCATGATGATCCTAAACTGATAAAGAGAAGTATACAGAAATGGAAGAATAGGCAGCAGAAAATCGCAGTGAAATGGGAAGAGAGGGTTCAAAGTTCAAACAAAGGATCAGTTGAAGGCAGAGAAACAACAAAAAAGGTATGCAAATATAGCTGA

Protein sequence

>MS.gene71178.t1

MNDSDGEEGAVKPFMSGLEADDRFATFEELRERLHRKLEEFQSGPNCANLENANKRDERKIEFPEEKVVKEATESLKELVFGNVKLQNGEMQGKRKVSKHKELERAKKLEEVKKNDPEKGEAIAKKEAWKAAMNRASGIKVHDDPKLIKRSIQKWKNRQQKIAVKWEERVQSSNKGSVEGRETTKKVCKYS