Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71232.t1 | XP_003601257.1 | 71.3 | 164 | 12 | 2 | 1 | 129 | 1 | 164 | 4.10E-51 | 210.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71232.t1 | Q8LR34 | 66.4 | 125 | 11 | 1 | 28 | 121 | 34 | 158 | 1.7e-37 | 156.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71232.t1 | B7FHC6 | 71.3 | 164 | 12 | 2 | 1 | 129 | 1 | 164 | 2.9e-51 | 210.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene71232 | 0.817917 | 2.57E-52 | -1.69E-46 |
| MS.gene04917 | MS.gene71232 | 0.814184 | 1.75E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene71232 | 0.834512 | 2.87E-56 | -1.69E-46 |
| MS.gene049382 | MS.gene71232 | 0.807049 | 6.11E-50 | -1.69E-46 |
| MS.gene04984 | MS.gene71232 | 0.849252 | 3.64E-60 | -1.69E-46 |
| MS.gene04991 | MS.gene71232 | -0.817286 | 3.57E-52 | -1.69E-46 |
| MS.gene050114 | MS.gene71232 | 0.804018 | 2.64E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene71232 | 0.821877 | 3.20E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene71232 | 0.818346 | 2.06E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene71232 | 0.822989 | 1.76E-53 | -1.69E-46 |
| MS.gene050719 | MS.gene71232 | 0.804278 | 2.33E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene71232 | 0.800965 | 1.12E-48 | -1.69E-46 |
| MS.gene050724 | MS.gene71232 | 0.800858 | 1.18E-48 | -1.69E-46 |
| MS.gene050762 | MS.gene71232 | 0.843097 | 1.73E-58 | -1.69E-46 |
| MS.gene050763 | MS.gene71232 | 0.844505 | 7.25E-59 | -1.69E-46 |
| MS.gene050824 | MS.gene71232 | 0.809831 | 1.56E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene71232 | 0.813668 | 2.28E-51 | -1.69E-46 |
| MS.gene051210 | MS.gene71232 | 0.828327 | 9.56E-55 | -1.69E-46 |
| MS.gene051245 | MS.gene71232 | 0.820473 | 6.73E-53 | -1.69E-46 |
| MS.gene051757 | MS.gene71232 | 0.839917 | 1.19E-57 | -1.69E-46 |
| MS.gene052856 | MS.gene71232 | 0.800072 | 1.71E-48 | -1.69E-46 |
| MS.gene053216 | MS.gene71232 | 0.80339 | 3.57E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene71232 | 0.847827 | 9.04E-60 | -1.69E-46 |
| MS.gene05462 | MS.gene71232 | 0.806649 | 7.43E-50 | -1.69E-46 |
| MS.gene054823 | MS.gene71232 | 0.814676 | 1.36E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene71232 | 0.826211 | 3.07E-54 | -1.69E-46 |
| MS.gene056480 | MS.gene71232 | 0.805809 | 1.12E-49 | -1.69E-46 |
| MS.gene056849 | MS.gene71232 | 0.822827 | 1.92E-53 | -1.69E-46 |
| MS.gene057360 | MS.gene71232 | 0.833999 | 3.86E-56 | -1.69E-46 |
| MS.gene058278 | MS.gene71232 | 0.815328 | 9.78E-52 | -1.69E-46 |
| MS.gene058646 | MS.gene71232 | 0.804403 | 2.20E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene71232 | 0.814515 | 1.48E-51 | -1.69E-46 |
| MS.gene059713 | MS.gene71232 | 0.839996 | 1.13E-57 | -1.69E-46 |
| MS.gene060084 | MS.gene71232 | 0.811992 | 5.30E-51 | -1.69E-46 |
| MS.gene060296 | MS.gene71232 | 0.807264 | 5.50E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene71232 | 0.817253 | 3.63E-52 | -1.69E-46 |
| MS.gene060637 | MS.gene71232 | 0.821645 | 3.62E-53 | -1.69E-46 |
| MS.gene060869 | MS.gene71232 | 0.810844 | 9.42E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene71232 | 0.824621 | 7.31E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71232.t1 | MTR_3g077720 | 71.341 | 164 | 12 | 2 | 1 | 129 | 1 | 164 | 1.84e-76 | 224 |
| MS.gene71232.t1 | MTR_3g077730 | 61.832 | 131 | 13 | 2 | 32 | 125 | 5 | 135 | 8.84e-46 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71232.t1 | AT4G22220 | 55.769 | 156 | 37 | 3 | 5 | 129 | 7 | 161 | 4.25e-49 | 154 |
| MS.gene71232.t1 | AT4G04080 | 50.932 | 161 | 45 | 4 | 1 | 128 | 1 | 160 | 4.19e-47 | 150 |
| MS.gene71232.t1 | AT3G01020 | 50.318 | 157 | 45 | 2 | 1 | 127 | 3 | 156 | 1.31e-41 | 135 |
Find 35 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTAAGGTTGATGATAA+TGG | 0.228001 | 8.3:+36762356 | MS.gene71232:intron |
| AGTCGCCAATTCCAGCAATT+AGG | 0.263293 | 8.3:+36762196 | MS.gene71232:CDS |
| GATTCTTGCTTTAAGACCTT+TGG | 0.331092 | 8.3:+36762389 | MS.gene71232:CDS |
| GTCGCCAATTCCAGCAATTA+GGG | 0.344413 | 8.3:+36762197 | MS.gene71232:CDS |
| ATGCTGCAGTGAAGCTTAAC+TGG | 0.354352 | 8.3:-36764089 | None:intergenic |
| TGCAGCTACTGAATGGGTTA+AGG | 0.372146 | 8.3:+36762593 | MS.gene71232:intron |
| GCGACTCAAACGACGCCGTT+TGG | 0.381388 | 8.3:-36762179 | None:intergenic |
| AGAACCCTAATTGCTGGAAT+TGG | 0.383969 | 8.3:-36762201 | None:intergenic |
| CGTGGAAGAACCCTAATTGC+TGG | 0.397022 | 8.3:-36762207 | None:intergenic |
| GCAGCTACTGAATGGGTTAA+GGG | 0.413530 | 8.3:+36762594 | MS.gene71232:intron |
| ATCGATTTGCAGCTACTGAA+TGG | 0.427762 | 8.3:+36762586 | MS.gene71232:intron |
| ATTGAAGGATCCAACATTCC+GGG | 0.441741 | 8.3:-36762268 | None:intergenic |
| CGCAAAGAAACTCGTCCAAA+CGG | 0.447336 | 8.3:+36762164 | MS.gene71232:CDS |
| TGCTTTAAGACCTTTGGATG+TGG | 0.461939 | 8.3:+36762395 | MS.gene71232:CDS |
| TCGATTTGCAGCTACTGAAT+GGG | 0.467835 | 8.3:+36762587 | MS.gene71232:intron |
| TATGAAGCTAAGCGTGCCTC+GGG | 0.499721 | 8.3:+36764149 | MS.gene71232:CDS |
| TTATGAAGCTAAGCGTGCCT+CGG | 0.532049 | 8.3:+36764148 | MS.gene71232:CDS |
| TGCAGTGAAGCTTAACTGGC+GGG | 0.542392 | 8.3:-36764085 | None:intergenic |
| GCTATTGCTTCATCGTCCGT+TGG | 0.572466 | 8.3:+36762422 | MS.gene71232:CDS |
| ATTCTACCACGAGAGGGTGG+TGG | 0.593190 | 8.3:+36762230 | MS.gene71232:CDS |
| TCACTGCAGCATGCTTGCTG+AGG | 0.608636 | 8.3:+36764100 | MS.gene71232:CDS |
| TGGATCACTACGAAAATCCC+CGG | 0.610214 | 8.3:+36762250 | MS.gene71232:CDS |
| GGTTAAGGGAAAGCAAATTG+AGG | 0.612867 | 8.3:+36762608 | MS.gene71232:CDS |
| TCCACGATTCTACCACGAGA+GGG | 0.625238 | 8.3:+36762224 | MS.gene71232:CDS |
| CTGCAGTGAAGCTTAACTGG+CGG | 0.631259 | 8.3:-36764086 | None:intergenic |
| ACCCTCTCGTGGTAGAATCG+TGG | 0.631852 | 8.3:-36762225 | None:intergenic |
| TTGAAGGATCCAACATTCCG+GGG | 0.632300 | 8.3:-36762267 | None:intergenic |
| AATAGCGGAACCACATCCAA+AGG | 0.639771 | 8.3:-36762405 | None:intergenic |
| AGTGATCCACCACCCTCTCG+TGG | 0.652272 | 8.3:-36762236 | None:intergenic |
| TTCCACGATTCTACCACGAG+AGG | 0.656410 | 8.3:+36762223 | MS.gene71232:CDS |
| CAATGGGAGAAATCATGCAG+TGG | 0.672265 | 8.3:-36764183 | None:intergenic |
| AACGGACGATGAAGCAATAG+CGG | 0.675366 | 8.3:-36762420 | None:intergenic |
| AGTGGCAGATTTGTCTCCCG+AGG | 0.683949 | 8.3:-36764165 | None:intergenic |
| ACGATTCTACCACGAGAGGG+TGG | 0.684824 | 8.3:+36762227 | MS.gene71232:CDS |
| TGAGGATGCTATAAAAGCAG+CGG | 0.695297 | 8.3:+36764118 | MS.gene71232:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATAAAACTTGATAT+AGG | - | chr8.3:36762888-36762907 | None:intergenic | 10.0% |
| !!! | AAGGATTTTTTTTTTTTTTT+AGG | + | chr8.3:36762484-36762503 | MS.gene71232:intron | 10.0% |
| !!! | AGGATTTTTTTTTTTTTTTA+GGG | + | chr8.3:36762485-36762504 | MS.gene71232:intron | 10.0% |
| !! | ATCAAATTCATCAATAAAAA+AGG | - | chr8.3:36762531-36762550 | None:intergenic | 15.0% |
| !! | TCAAATTCATCAATAAAAAA+GGG | - | chr8.3:36762530-36762549 | None:intergenic | 15.0% |
| !! | TTATATTTATTCTTCATGAT+CGG | + | chr8.3:36763709-36763728 | MS.gene71232:intron | 15.0% |
| !!! | AATAGATACATAATTTTTAG+TGG | + | chr8.3:36763817-36763836 | MS.gene71232:intron | 15.0% |
| !!! | AGTGTAACTTATTTTATTTT+AGG | - | chr8.3:36763491-36763510 | None:intergenic | 15.0% |
| !!! | ATAAATTTTTTGTTGAAGAT+GGG | + | chr8.3:36762980-36762999 | MS.gene71232:intron | 15.0% |
| !!! | TATAAATTTTTTGTTGAAGA+TGG | + | chr8.3:36762979-36762998 | MS.gene71232:intron | 15.0% |
| !!! | TCCCAAATTTTAATAAATTT+GGG | - | chr8.3:36763798-36763817 | None:intergenic | 15.0% |
| !!! | TTCCCAAATTTTAATAAATT+TGG | - | chr8.3:36763799-36763818 | None:intergenic | 15.0% |
| !!! | TTGGTTTTAATTTTATGTTT+GGG | + | chr8.3:36763047-36763066 | MS.gene71232:intron | 15.0% |
| !! | ATGTAGAAAGCAAATATATT+TGG | + | chr8.3:36763024-36763043 | MS.gene71232:intron | 20.0% |
| !! | GCCCAAATTTATTAAAATTT+GGG | + | chr8.3:36763794-36763813 | MS.gene71232:intron | 20.0% |
| !! | TGAAGTTAAAATTGTAATGT+TGG | - | chr8.3:36763243-36763262 | None:intergenic | 20.0% |
| !! | TGCCCAAATTTATTAAAATT+TGG | + | chr8.3:36763793-36763812 | MS.gene71232:intron | 20.0% |
| !!! | AAATTTTAATAAATTTGGGC+AGG | - | chr8.3:36763794-36763813 | None:intergenic | 20.0% |
| !!! | AACTTATTTTATTTTAGGAC+AGG | - | chr8.3:36763486-36763505 | None:intergenic | 20.0% |
| !!! | ACTTATTTTATTTTAGGACA+GGG | - | chr8.3:36763485-36763504 | None:intergenic | 20.0% |
| !!! | ATTTTTATCTTTCTTCAGTT+CGG | + | chr8.3:36762905-36762924 | MS.gene71232:intron | 20.0% |
| !!! | CTACTAAATAGTTTTATCTT+TGG | + | chr8.3:36763965-36763984 | MS.gene71232:intron | 20.0% |
| !!! | CTTTTATGAATATTACTACT+TGG | + | chr8.3:36763567-36763586 | MS.gene71232:intron | 20.0% |
| !!! | GTTACATTTTAATCAAACTT+TGG | + | chr8.3:36762932-36762951 | MS.gene71232:intron | 20.0% |
| !!! | GTTGGTTTTAATTTTATGTT+TGG | + | chr8.3:36763046-36763065 | MS.gene71232:intron | 20.0% |
| !!! | TGGTTTTAATTTTATGTTTG+GGG | + | chr8.3:36763048-36763067 | MS.gene71232:intron | 20.0% |
| !!! | TTTTAATAAACCATTCTCTA+AGG | + | chr8.3:36763401-36763420 | MS.gene71232:intron | 20.0% |
| ! | AAATTGTAATGTTGGATGAT+AGG | - | chr8.3:36763235-36763254 | None:intergenic | 25.0% |
| ! | AACAAGAAAAAGAAACCAAA+AGG | - | chr8.3:36763888-36763907 | None:intergenic | 25.0% |
| ! | AGAAAGCAAATATATTTGGT+TGG | + | chr8.3:36763028-36763047 | MS.gene71232:intron | 25.0% |
| ! | TGTCATGAAGTTTCAAATTA+AGG | + | chr8.3:36762343-36762362 | MS.gene71232:intron | 25.0% |
| ! | TTATCATTCTCTAATAGTTC+AGG | + | chr8.3:36763362-36763381 | MS.gene71232:intron | 25.0% |
| !! | ATATTTTGCCATAATAAGCA+TGG | + | chr8.3:36762843-36762862 | MS.gene71232:intron | 25.0% |
| !! | TATTTTTCGCTTGAGAATAT+TGG | + | chr8.3:36762791-36762810 | MS.gene71232:intron | 25.0% |
| !!! | ACAGCTTATTTTTCTACTTA+TGG | + | chr8.3:36763099-36763118 | MS.gene71232:intron | 25.0% |
| !!! | CAAATTAAGGTTGATGATAA+TGG | + | chr8.3:36762356-36762375 | MS.gene71232:intron | 25.0% |
| !!! | CTTATTTTATTTTAGGACAG+GGG | - | chr8.3:36763484-36763503 | None:intergenic | 25.0% |
| !!! | TAGGTTGTTTTTTCATGTAT+TGG | + | chr8.3:36762445-36762464 | MS.gene71232:intron | 25.0% |
| !!! | TGGTTTCTTTTTCTTGTTTT+TGG | + | chr8.3:36763890-36763909 | MS.gene71232:intron | 25.0% |
| !!! | TGGTTTGTTATAGGAAATTA+AGG | + | chr8.3:36762465-36762484 | MS.gene71232:intron | 25.0% |
| !!! | TTATTTTATTTTAGGACAGG+GGG | - | chr8.3:36763483-36763502 | None:intergenic | 25.0% |
| !!! | TTCATGTATTGGTTTGTTAT+AGG | + | chr8.3:36762456-36762475 | MS.gene71232:intron | 25.0% |
| !!! | TTCTTTTTCTTGTTTTTGGA+AGG | + | chr8.3:36763894-36763913 | MS.gene71232:intron | 25.0% |
| !!! | TTTTAATCAAACTTTGGCTT+TGG | + | chr8.3:36762938-36762957 | MS.gene71232:intron | 25.0% |
| AACTGTTTCCATGCTTATTA+TGG | - | chr8.3:36762854-36762873 | None:intergenic | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr8.3:36763089-36763108 | None:intergenic | 30.0% | |
| AATAAGGAAGATCGGAATAT+TGG | + | chr8.3:36762288-36762307 | MS.gene71232:intron | 30.0% | |
| ATAAGCTGTTTATCCAAACA+GGG | - | chr8.3:36763088-36763107 | None:intergenic | 30.0% | |
| ATGAAAAAACAACCTACCAA+CGG | - | chr8.3:36762441-36762460 | None:intergenic | 30.0% | |
| TAAGATTAAATCCTGCAGAT+CGG | - | chr8.3:36763945-36763964 | None:intergenic | 30.0% | |
| TCATAAAAGTTAGTATTCGC+TGG | - | chr8.3:36763556-36763575 | None:intergenic | 30.0% | |
| ! | TTTTCGTGCACTCTTTAATT+TGG | - | chr8.3:36763292-36763311 | None:intergenic | 30.0% |
| !! | AAGCAAATTGTGTTTTTGTC+TGG | + | chr8.3:36762690-36762709 | MS.gene71232:intron | 30.0% |
| !!! | TTTTTCTTGTTTTTGGAAGG+AGG | + | chr8.3:36763897-36763916 | MS.gene71232:intron | 30.0% |
| AACATAGCAGCAAAAGATGA+TGG | - | chr8.3:36763860-36763879 | None:intergenic | 35.0% | |
| AATAGCTCGACCTATAGAAT+AGG | + | chr8.3:36763669-36763688 | MS.gene71232:intron | 35.0% | |
| AATATTGGATCTGCTCTTGT+TGG | + | chr8.3:36762303-36762322 | MS.gene71232:intron | 35.0% | |
| ATAGCTCGACCTATAGAATA+GGG | + | chr8.3:36763670-36763689 | MS.gene71232:intron | 35.0% | |
| ATTCCGATCTTCCTTATTGA+AGG | - | chr8.3:36762286-36762305 | None:intergenic | 35.0% | |
| GAAGTTTGTGTATTACTACG+TGG | + | chr8.3:36762715-36762734 | MS.gene71232:intron | 35.0% | |
| GAATGTTGGATCCTTCAATA+AGG | + | chr8.3:36762272-36762291 | MS.gene71232:intron | 35.0% | |
| GATCCTTCAATAAGGAAGAT+CGG | + | chr8.3:36762280-36762299 | MS.gene71232:intron | 35.0% | |
| TATTGAAGGATCCAACATTC+CGG | - | chr8.3:36762272-36762291 | None:intergenic | 35.0% | |
| ! | CATCTTTTGCTGCTATGTTT+TGG | + | chr8.3:36763861-36763880 | MS.gene71232:intron | 35.0% |
| ! | GAGTGTTTTTCCTTAGAGAA+TGG | - | chr8.3:36763414-36763433 | None:intergenic | 35.0% |
| !! | GATTCTTGCTTTAAGACCTT+TGG | + | chr8.3:36762389-36762408 | MS.gene71232:CDS | 35.0% |
| !! | TTTGGTAATGCTTCCATGAT+TGG | + | chr8.3:36763983-36764002 | MS.gene71232:intron | 35.0% |
| !! | TTTTGTTGAAGATGGGTTTC+TGG | + | chr8.3:36762987-36763006 | MS.gene71232:intron | 35.0% |
| AGAACCCTAATTGCTGGAAT+TGG | - | chr8.3:36762204-36762223 | None:intergenic | 40.0% | |
| ATTGAAGGATCCAACATTCC+GGG | - | chr8.3:36762271-36762290 | None:intergenic | 40.0% | |
| CAGACCAAAACTACCAATCA+TGG | - | chr8.3:36763999-36764018 | None:intergenic | 40.0% | |
| CCATCAAACAATGCTAGCAA+GGG | + | chr8.3:36763618-36763637 | MS.gene71232:intron | 40.0% | |
| GGTTAAGGGAAAGCAAATTG+AGG | + | chr8.3:36762608-36762627 | MS.gene71232:CDS | 40.0% | |
| TAGCTACTAGGAAGAGTTTC+CGG | + | chr8.3:36763641-36763660 | MS.gene71232:intron | 40.0% | |
| TCCATCAAACAATGCTAGCA+AGG | + | chr8.3:36763617-36763636 | MS.gene71232:intron | 40.0% | |
| TGAGGATGCTATAAAAGCAG+CGG | + | chr8.3:36764118-36764137 | MS.gene71232:CDS | 40.0% | |
| ! | CTGGATTGCGTTATTTCAAC+TGG | - | chr8.3:36763537-36763556 | None:intergenic | 40.0% |
| ! | GTTATTTCAACTGGTCGCTA+TGG | - | chr8.3:36763528-36763547 | None:intergenic | 40.0% |
| ! | TAGGTCGAGCTATTTCATAC+CGG | - | chr8.3:36763663-36763682 | None:intergenic | 40.0% |
| ! | TCGATTTGCAGCTACTGAAT+GGG | + | chr8.3:36762587-36762606 | MS.gene71232:intron | 40.0% |
| !! | ATCGATTTGCAGCTACTGAA+TGG | + | chr8.3:36762586-36762605 | MS.gene71232:intron | 40.0% |
| !! | CTGCTATGTTTTGGACCTTT+TGG | + | chr8.3:36763870-36763889 | MS.gene71232:intron | 40.0% |
| !! | GCTTCCATGATTGGTAGTTT+TGG | + | chr8.3:36763992-36764011 | MS.gene71232:intron | 40.0% |
| !! | TGCTTTAAGACCTTTGGATG+TGG | + | chr8.3:36762395-36762414 | MS.gene71232:CDS | 40.0% |
| !!! | AGCTTTGGATTCCTTTTCCT+TGG | - | chr8.3:36763738-36763757 | None:intergenic | 40.0% |
| !!! | TTTATTTTAGGACAGGGGGT+GGG | - | chr8.3:36763479-36763498 | None:intergenic | 40.0% |
| !!! | TTTTATTTTAGGACAGGGGG+TGG | - | chr8.3:36763480-36763499 | None:intergenic | 40.0% |
| AACGGACGATGAAGCAATAG+CGG | - | chr8.3:36762423-36762442 | None:intergenic | 45.0% | |
| AGTCGCCAATTCCAGCAATT+AGG | + | chr8.3:36762196-36762215 | MS.gene71232:CDS | 45.0% | |
| ATGATCGGCAACCAAGGAAA+AGG | + | chr8.3:36763724-36763743 | MS.gene71232:intron | 45.0% | |
| ATGCTGCAGTGAAGCTTAAC+TGG | - | chr8.3:36764092-36764111 | None:intergenic | 45.0% | |
| CACTCCTCTCCCTATTCTAT+AGG | - | chr8.3:36763682-36763701 | None:intergenic | 45.0% | |
| CCCTTGCTAGCATTGTTTGA+TGG | - | chr8.3:36763621-36763640 | None:intergenic | 45.0% | |
| CGCAAAGAAACTCGTCCAAA+CGG | + | chr8.3:36762164-36762183 | MS.gene71232:CDS | 45.0% | |
| CTATAGAATAGGGAGAGGAG+TGG | + | chr8.3:36763680-36763699 | MS.gene71232:intron | 45.0% | |
| CTTCATGACATCACCACAAG+CGG | - | chr8.3:36762333-36762352 | None:intergenic | 45.0% | |
| GACGTGTAGCTAAGTAGCTT+TGG | - | chr8.3:36763753-36763772 | None:intergenic | 45.0% | |
| GCGCGATTCAGAAACCAAAA+GGG | - | chr8.3:36763923-36763942 | None:intergenic | 45.0% | |
| GTCGCCAATTCCAGCAATTA+GGG | + | chr8.3:36762197-36762216 | MS.gene71232:CDS | 45.0% | |
| TACGAAAATCCCCGGAATGT+TGG | + | chr8.3:36762258-36762277 | MS.gene71232:intron | 45.0% | |
| TCGACCTATAGAATAGGGAG+AGG | + | chr8.3:36763675-36763694 | MS.gene71232:intron | 45.0% | |
| TGGATCACTACGAAAATCCC+CGG | + | chr8.3:36762250-36762269 | MS.gene71232:CDS | 45.0% | |
| TTATGAAGCTAAGCGTGCCT+CGG | + | chr8.3:36764148-36764167 | MS.gene71232:CDS | 45.0% | |
| TTCTTCATGATCGGCAACCA+AGG | + | chr8.3:36763718-36763737 | MS.gene71232:intron | 45.0% | |
| TTGAAGGATCCAACATTCCG+GGG | - | chr8.3:36762270-36762289 | None:intergenic | 45.0% | |
| ! | AATAGCGGAACCACATCCAA+AGG | - | chr8.3:36762408-36762427 | None:intergenic | 45.0% |
| !! | AACTTTGGCTTTGGTGCTTG+AGG | + | chr8.3:36762947-36762966 | MS.gene71232:intron | 45.0% |
| !! | GCAGCTACTGAATGGGTTAA+GGG | + | chr8.3:36762594-36762613 | MS.gene71232:intron | 45.0% |
| !! | TGCAGCTACTGAATGGGTTA+AGG | + | chr8.3:36762593-36762612 | MS.gene71232:intron | 45.0% |
| !! | TTTTTGGAAGGAGGCCCTTT+TGG | + | chr8.3:36763906-36763925 | MS.gene71232:intron | 45.0% |
| CGTGGAAGAACCCTAATTGC+TGG | - | chr8.3:36762210-36762229 | None:intergenic | 50.0% | |
| CTGCAGTGAAGCTTAACTGG+CGG | - | chr8.3:36764089-36764108 | None:intergenic | 50.0% | |
| GCTATTGCTTCATCGTCCGT+TGG | + | chr8.3:36762422-36762441 | MS.gene71232:CDS | 50.0% | |
| GGCGCGATTCAGAAACCAAA+AGG | - | chr8.3:36763924-36763943 | None:intergenic | 50.0% | |
| TATGAAGCTAAGCGTGCCTC+GGG | + | chr8.3:36764149-36764168 | MS.gene71232:CDS | 50.0% | |
| TCAACTGGTCGCTATGGTGA+TGG | - | chr8.3:36763522-36763541 | None:intergenic | 50.0% | |
| TCCACGATTCTACCACGAGA+GGG | + | chr8.3:36762224-36762243 | MS.gene71232:CDS | 50.0% | |
| TGCAGTGAAGCTTAACTGGC+GGG | - | chr8.3:36764088-36764107 | None:intergenic | 50.0% | |
| TGCTAGCAAGGGTAGCTACT+AGG | + | chr8.3:36763629-36763648 | MS.gene71232:intron | 50.0% | |
| TTCCACGATTCTACCACGAG+AGG | + | chr8.3:36762223-36762242 | MS.gene71232:CDS | 50.0% | |
| TTGAAGATGCGAGCCCTGTT+TGG | + | chr8.3:36763072-36763091 | MS.gene71232:intron | 50.0% | |
| TTGCTTCATCGTCCGTTGGT+AGG | + | chr8.3:36762426-36762445 | MS.gene71232:intron | 50.0% | |
| !! | GCTTTGGTGCTTGAGGTTGA+TGG | + | chr8.3:36762954-36762973 | MS.gene71232:intron | 50.0% |
| !! | TGGTCGCTATGGTGATGGTT+AGG | - | chr8.3:36763517-36763536 | None:intergenic | 50.0% |
| ACCCTCTCGTGGTAGAATCG+TGG | - | chr8.3:36762228-36762247 | None:intergenic | 55.0% | |
| ACGATTCTACCACGAGAGGG+TGG | + | chr8.3:36762227-36762246 | MS.gene71232:CDS | 55.0% | |
| AGTGGCAGATTTGTCTCCCG+AGG | - | chr8.3:36764168-36764187 | None:intergenic | 55.0% | |
| ATTCTACCACGAGAGGGTGG+TGG | + | chr8.3:36762230-36762249 | MS.gene71232:CDS | 55.0% | |
| TCTTGTTGGTGCACCGCTTG+TGG | + | chr8.3:36762317-36762336 | MS.gene71232:intron | 55.0% | |
| ! | TCACTGCAGCATGCTTGCTG+AGG | + | chr8.3:36764100-36764119 | MS.gene71232:CDS | 55.0% |
| !!! | ATTTTAGGACAGGGGGTGGG+TGG | - | chr8.3:36763476-36763495 | None:intergenic | 55.0% |
| !!! | TTTTAGGACAGGGGGTGGGT+GGG | - | chr8.3:36763475-36763494 | None:intergenic | 55.0% |
| AGTGATCCACCACCCTCTCG+TGG | - | chr8.3:36762239-36762258 | None:intergenic | 60.0% | |
| GCGACTCAAACGACGCCGTT+TGG | - | chr8.3:36762182-36762201 | None:intergenic | 60.0% | |
| ! | TCTGAATCGCGCCGATCTGC+AGG | + | chr8.3:36763931-36763950 | MS.gene71232:intron | 60.0% |
| ACAGGGGGTGGGTGGGTGAG+TGG | - | chr8.3:36763468-36763487 | None:intergenic | 70.0% | |
| GGTGGGTGGGTGAGTGGTGG+TGG | - | chr8.3:36763462-36763481 | None:intergenic | 70.0% | |
| !! | GGGTGGGTGAGTGGTGGTGG+TGG | - | chr8.3:36763459-36763478 | None:intergenic | 70.0% |
| GGGGGTGGGTGGGTGAGTGG+TGG | - | chr8.3:36763465-36763484 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 36762153 | 36764193 | 36762153 | ID=MS.gene71232 |
| chr8.3 | mRNA | 36762153 | 36764193 | 36762153 | ID=MS.gene71232.t1;Parent=MS.gene71232 |
| chr8.3 | exon | 36762153 | 36762275 | 36762153 | ID=MS.gene71232.t1.exon1;Parent=MS.gene71232.t1 |
| chr8.3 | CDS | 36762153 | 36762275 | 36762153 | ID=cds.MS.gene71232.t1;Parent=MS.gene71232.t1 |
| chr8.3 | exon | 36762365 | 36762443 | 36762365 | ID=MS.gene71232.t1.exon2;Parent=MS.gene71232.t1 |
| chr8.3 | CDS | 36762365 | 36762443 | 36762365 | ID=cds.MS.gene71232.t1;Parent=MS.gene71232.t1 |
| chr8.3 | exon | 36762598 | 36762652 | 36762598 | ID=MS.gene71232.t1.exon3;Parent=MS.gene71232.t1 |
| chr8.3 | CDS | 36762598 | 36762652 | 36762598 | ID=cds.MS.gene71232.t1;Parent=MS.gene71232.t1 |
| chr8.3 | exon | 36764061 | 36764193 | 36764061 | ID=MS.gene71232.t1.exon4;Parent=MS.gene71232.t1 |
| chr8.3 | CDS | 36764061 | 36764193 | 36764061 | ID=cds.MS.gene71232.t1;Parent=MS.gene71232.t1 |
| Gene Sequence |
| Protein sequence |
