Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71285.t1 | PNX57102.1 | 48.6 | 105 | 52 | 1 | 26 | 130 | 2 | 104 | 2.70E-15 | 92 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71285.t1 | A0A2K3JSS6 | 48.6 | 105 | 52 | 1 | 26 | 130 | 2 | 104 | 2.0e-15 | 92.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060572 | MS.gene71285 | 0.806558 | 7.76E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene71285 | MS.gene044326 | PPI |
MS.gene77472 | MS.gene71285 | PPI |
MS.gene71285 | MS.gene70427 | PPI |
MS.gene71285 | MS.gene70424 | PPI |
MS.gene71285 | MS.gene049263 | PPI |
MS.gene71285 | MS.gene70476 | PPI |
MS.gene71285 | MS.gene25704 | PPI |
MS.gene71285 | MS.gene77468 | PPI |
MS.gene71285 | MS.gene71531 | PPI |
MS.gene79115 | MS.gene71285 | PPI |
MS.gene044370 | MS.gene71285 | PPI |
MS.gene71285 | MS.gene044323 | PPI |
MS.gene71285 | MS.gene71284 | PPI |
MS.gene71285 | MS.gene044376 | PPI |
MS.gene70443 | MS.gene71285 | PPI |
MS.gene71285 | MS.gene045214 | PPI |
MS.gene044363 | MS.gene71285 | PPI |
MS.gene71285 | MS.gene77466 | PPI |
MS.gene71285 | MS.gene044361 | PPI |
MS.gene70430 | MS.gene71285 | PPI |
MS.gene71285 | MS.gene71282 | PPI |
MS.gene70418 | MS.gene71285 | PPI |
MS.gene71285 | MS.gene71524 | PPI |
MS.gene71285 | MS.gene71528 | PPI |
MS.gene71285 | MS.gene77464 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71285.t1 | MTR_3g083080 | 45.113 | 133 | 64 | 4 | 18 | 150 | 72 | 195 | 5.10e-26 | 98.6 |
MS.gene71285.t1 | MTR_3g080680 | 46.809 | 141 | 56 | 6 | 16 | 140 | 44 | 181 | 1.69e-23 | 92.0 |
MS.gene71285.t1 | MTR_3g082420 | 37.143 | 175 | 74 | 7 | 2 | 140 | 30 | 204 | 2.92e-22 | 89.4 |
MS.gene71285.t1 | MTR_3g082340 | 39.597 | 149 | 75 | 5 | 7 | 140 | 57 | 205 | 3.80e-22 | 89.0 |
MS.gene71285.t1 | MTR_3g083030 | 45.528 | 123 | 59 | 4 | 18 | 140 | 97 | 211 | 1.67e-20 | 84.7 |
MS.gene71285.t1 | MTR_3g083050 | 45.528 | 123 | 59 | 4 | 18 | 140 | 74 | 188 | 2.13e-20 | 84.0 |
MS.gene71285.t1 | MTR_4g055800 | 36.364 | 154 | 64 | 4 | 11 | 139 | 127 | 271 | 2.32e-17 | 77.4 |
MS.gene71285.t1 | MTR_3g083150 | 39.815 | 108 | 55 | 5 | 38 | 139 | 91 | 194 | 1.75e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 38 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCGGTTGTGATCCCAATTC+AGG | 0.283996 | 3.4:+78142590 | None:intergenic |
TCTCTCCGACCTTGCTTTGA+AGG | 0.298998 | 3.4:-78142267 | MS.gene71285:CDS |
CAAAATGTCGAAACCTGAAT+TGG | 0.303444 | 3.4:-78142603 | None:intergenic |
AAGCATGACCAAATGCTTTA+CGG | 0.311912 | 3.4:+78140899 | None:intergenic |
GTCAGCAATTAGTTCTTCTA+TGG | 0.315331 | 3.4:+78142511 | None:intergenic |
AGTTGTTGTAGCATGGATAT+TGG | 0.329322 | 3.4:+78142010 | None:intergenic |
CCCATTGCTAATAGGAATAT+AGG | 0.355889 | 3.4:-78140928 | MS.gene71285:CDS |
AGAGGCAACCCATTGCTAAT+AGG | 0.387747 | 3.4:-78140936 | MS.gene71285:CDS |
GGAATAAACCGTAAAGCATT+TGG | 0.390050 | 3.4:-78140907 | MS.gene71285:CDS |
CCATGCTACAACAACTTTCC+AGG | 0.393947 | 3.4:-78142003 | MS.gene71285:CDS |
TCCTATATTCCTATTAGCAA+TGG | 0.443608 | 3.4:+78140927 | None:intergenic |
CCTATATTCCTATTAGCAAT+GGG | 0.448136 | 3.4:+78140928 | None:intergenic |
ACTGCTATTGGCTGTGGTGG+TGG | 0.463061 | 3.4:-78142080 | MS.gene71285:CDS |
TCCGAATCGTGTTTCGATTG+CGG | 0.463704 | 3.4:+78142572 | None:intergenic |
AAGATCTTCGGTTAAGTCAA+TGG | 0.464314 | 3.4:+78142307 | None:intergenic |
GGATTACAATCAAAATAATC+AGG | 0.466466 | 3.4:-78142246 | MS.gene71285:intron |
TGCATATCAAGAATGTCTAC+AGG | 0.476197 | 3.4:-78140877 | MS.gene71285:CDS |
CCACATAACTCTAGAACTGC+TGG | 0.481125 | 3.4:+78142341 | None:intergenic |
AAAATGTCGAAACCTGAATT+GGG | 0.487541 | 3.4:-78142602 | MS.gene71285:CDS |
GTCAAGTGTACCACTGCTAT+TGG | 0.493427 | 3.4:-78142092 | MS.gene71285:CDS |
ACCGCAATCGAAACACGATT+CGG | 0.495086 | 3.4:-78142573 | MS.gene71285:CDS |
CGACGACGATGACGAGTTTG+CGG | 0.511755 | 3.4:-78142546 | MS.gene71285:CDS |
TCGGAGAGAGCAACGAGAGT+AGG | 0.517372 | 3.4:+78142281 | None:intergenic |
AGATCTTCGGTTAAGTCAAT+GGG | 0.517721 | 3.4:+78142308 | None:intergenic |
CGAGTTTGCGGAAGAGAAAG+AGG | 0.530206 | 3.4:-78142534 | MS.gene71285:CDS |
GAGAGTAGGACGAAGATCTT+CGG | 0.531389 | 3.4:+78142295 | None:intergenic |
TGTACCACTGCTATTGGCTG+TGG | 0.535578 | 3.4:-78142086 | MS.gene71285:CDS |
GATTGTAATCCTTCAAAGCA+AGG | 0.537388 | 3.4:+78142258 | None:intergenic |
CATCATCCCATACTTCGGCC+TGG | 0.538029 | 3.4:+78141985 | None:intergenic |
ACCACTGCTATTGGCTGTGG+TGG | 0.563850 | 3.4:-78142083 | MS.gene71285:CDS |
CCTGGAAAGTTGTTGTAGCA+TGG | 0.566074 | 3.4:+78142003 | None:intergenic |
GTTGTAGCATGGATATTGGA+AGG | 0.573026 | 3.4:+78142014 | None:intergenic |
CCAGCAGTTCTAGAGTTATG+TGG | 0.599177 | 3.4:-78142341 | MS.gene71285:CDS |
TAGCAGTGGTACACTTGACA+AGG | 0.661404 | 3.4:+78142096 | None:intergenic |
GGATGATAGATAGCATCGAA+CGG | 0.667704 | 3.4:+78142362 | None:intergenic |
ACCACCACAGCCAATAGCAG+TGG | 0.671651 | 3.4:+78142082 | None:intergenic |
GTAATCCTTCAAAGCAAGGT+CGG | 0.676410 | 3.4:+78142262 | None:intergenic |
GCATATCAAGAATGTCTACA+GGG | 0.693559 | 3.4:-78140876 | MS.gene71285:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAATTTAAAACTTTTTAAC+CGG | + | chr3.4:78142258-78142277 | None:intergenic | 10.0% |
!! | AATTGTTCTTCTTAATTATT+AGG | - | chr3.4:78141331-78141350 | MS.gene71285:intron | 15.0% |
!! | ATTGTTCTTCTTAATTATTA+GGG | - | chr3.4:78141332-78141351 | MS.gene71285:intron | 15.0% |
!!! | TTTTCTTGGAAATTTATAAA+TGG | - | chr3.4:78141600-78141619 | MS.gene71285:intron | 15.0% |
!! | AAAGTCAAATACAAAATCAA+TGG | + | chr3.4:78141641-78141660 | None:intergenic | 20.0% |
!! | AAGAAAAGATTAAACATGTA+AGG | + | chr3.4:78141587-78141606 | None:intergenic | 20.0% |
!! | ATCTTAATAATATACAACCA+TGG | + | chr3.4:78141809-78141828 | None:intergenic | 20.0% |
!! | ATTAAATATCGTAACTTCAA+TGG | + | chr3.4:78141682-78141701 | None:intergenic | 20.0% |
!!! | TAGAGTGTATTAGATTTTAA+TGG | + | chr3.4:78141543-78141562 | None:intergenic | 20.0% |
!!! | TTACATGTTTAATCTTTTCT+TGG | - | chr3.4:78141586-78141605 | MS.gene71285:intron | 20.0% |
! | CCATATAGATAATCAGAATT+CGG | - | chr3.4:78142386-78142405 | MS.gene71285:intron | 25.0% |
! | GAAGTTACGATATTTAATTG+TGG | - | chr3.4:78141684-78141703 | MS.gene71285:intron | 25.0% |
! | GGATGAAATTATTATTACCA+AGG | + | chr3.4:78141566-78141585 | None:intergenic | 25.0% |
! | GGATTACAATCAAAATAATC+AGG | - | chr3.4:78141226-78141245 | MS.gene71285:intron | 25.0% |
! | TCTAATTGTTCAATCATTTC+TGG | - | chr3.4:78141981-78142000 | MS.gene71285:intron | 25.0% |
! | TTACTTTAACACTGAATACA+TGG | - | chr3.4:78142284-78142303 | MS.gene71285:CDS | 25.0% |
!! | AAAATTTGATGATTTGGCAT+TGG | - | chr3.4:78141738-78141757 | MS.gene71285:intron | 25.0% |
!! | ACCTTGAAAATTTGATGATT+TGG | - | chr3.4:78141732-78141751 | MS.gene71285:intron | 25.0% |
!! | ACTGTGTTTTTCACTTTATT+TGG | - | chr3.4:78142065-78142084 | MS.gene71285:CDS | 25.0% |
!!! | CTGTGTTTTTCACTTTATTT+GGG | - | chr3.4:78142066-78142085 | MS.gene71285:CDS | 25.0% |
!!! | GTATAGATCGTATTTTTGTA+TGG | + | chr3.4:78141859-78141878 | None:intergenic | 25.0% |
!!! | TGTGTTTTTCACTTTATTTG+GGG | - | chr3.4:78142067-78142086 | MS.gene71285:CDS | 25.0% |
AAATCTAATACACTCTACCT+TGG | - | chr3.4:78141546-78141565 | MS.gene71285:intron | 30.0% | |
AGACATATCGTATATTACAG+AGG | - | chr3.4:78142518-78142537 | MS.gene71285:CDS | 30.0% | |
ATAGATAGTTTCGTACACTT+AGG | + | chr3.4:78141007-78141026 | None:intergenic | 30.0% | |
CCGAATTCTGATTATCTATA+TGG | + | chr3.4:78142389-78142408 | None:intergenic | 30.0% | |
CCTATATTCCTATTAGCAAT+GGG | + | chr3.4:78142547-78142566 | None:intergenic | 30.0% | |
GAATACATGGCAAATCAAAT+CGG | - | chr3.4:78142297-78142316 | MS.gene71285:CDS | 30.0% | |
TCCTATATTCCTATTAGCAA+TGG | + | chr3.4:78142548-78142567 | None:intergenic | 30.0% | |
TCCTTGCTTGTAATAAAAAC+AGG | + | chr3.4:78142180-78142199 | None:intergenic | 30.0% | |
TGATAACTGAACTTGTATCA+GGG | - | chr3.4:78142462-78142481 | MS.gene71285:intron | 30.0% | |
! | AATCAAGTTCTAGCAATGAT+AGG | + | chr3.4:78142139-78142158 | None:intergenic | 30.0% |
! | ATTTTCTTTAGCAGTTGTGA+TGG | + | chr3.4:78142345-78142364 | None:intergenic | 30.0% |
! | GCCAAATCATCAAATTTTCA+AGG | + | chr3.4:78141736-78141755 | None:intergenic | 30.0% |
! | TCAAACTAGACTTTGTTTGT+TGG | - | chr3.4:78142012-78142031 | MS.gene71285:CDS | 30.0% |
! | TTGATAACTGAACTTGTATC+AGG | - | chr3.4:78142461-78142480 | MS.gene71285:intron | 30.0% |
!!! | ACCTGTTTTTATTACAAGCA+AGG | - | chr3.4:78142176-78142195 | MS.gene71285:intron | 30.0% |
AAGATCTTCGGTTAAGTCAA+TGG | + | chr3.4:78141168-78141187 | None:intergenic | 35.0% | |
AAGCATGACCAAATGCTTTA+CGG | + | chr3.4:78142576-78142595 | None:intergenic | 35.0% | |
AGATCTTCGGTTAAGTCAAT+GGG | + | chr3.4:78141167-78141186 | None:intergenic | 35.0% | |
AGTTGTTGTAGCATGGATAT+TGG | + | chr3.4:78141465-78141484 | None:intergenic | 35.0% | |
ATATGAAGAGTAGAGAGACA+CGG | + | chr3.4:78141905-78141924 | None:intergenic | 35.0% | |
ATCATCATCATCCCATACTT+CGG | + | chr3.4:78141495-78141514 | None:intergenic | 35.0% | |
CCCATTGCTAATAGGAATAT+AGG | - | chr3.4:78142544-78142563 | MS.gene71285:CDS | 35.0% | |
CGGTAAATATGCAAATCATC+AGG | - | chr3.4:78142406-78142425 | MS.gene71285:intron | 35.0% | |
CTAGCAATGATAGGTAATAG+TGG | + | chr3.4:78142130-78142149 | None:intergenic | 35.0% | |
GAGGTCTAAAAATTGTTCCA+TGG | - | chr3.4:78141789-78141808 | MS.gene71285:intron | 35.0% | |
GATTGTAATCCTTCAAAGCA+AGG | + | chr3.4:78141217-78141236 | None:intergenic | 35.0% | |
GCATATCAAGAATGTCTACA+GGG | - | chr3.4:78142596-78142615 | MS.gene71285:CDS | 35.0% | |
GTAATAGTGGCTTATCACAA+GGG | + | chr3.4:78142117-78142136 | None:intergenic | 35.0% | |
TGCATATCAAGAATGTCTAC+AGG | - | chr3.4:78142595-78142614 | MS.gene71285:CDS | 35.0% | |
! | ACTCTTCATATTTGAAGCCT+AGG | - | chr3.4:78141914-78141933 | MS.gene71285:intron | 35.0% |
! | GGAATAAACCGTAAAGCATT+TGG | - | chr3.4:78142565-78142584 | MS.gene71285:CDS | 35.0% |
! | GTCAGCAATTAGTTCTTCTA+TGG | + | chr3.4:78140964-78140983 | None:intergenic | 35.0% |
! | TTTGTTTGTTGGCAACACTT+TGG | - | chr3.4:78142023-78142042 | MS.gene71285:CDS | 35.0% |
!! | ATGGCAAATCAAATCGGTTT+TGG | - | chr3.4:78142303-78142322 | MS.gene71285:CDS | 35.0% |
AAAAGAATCATGCTGCAGTC+CGG | - | chr3.4:78142236-78142255 | MS.gene71285:intron | 40.0% | |
AGTGTGACACATTAGATTGG+AGG | - | chr3.4:78141770-78141789 | MS.gene71285:intron | 40.0% | |
CTAAAGAAAATGTTGCGCAG+GGG | - | chr3.4:78142354-78142373 | MS.gene71285:CDS | 40.0% | |
GCTAAAGAAAATGTTGCGCA+GGG | - | chr3.4:78142353-78142372 | MS.gene71285:CDS | 40.0% | |
GGTAATAGTGGCTTATCACA+AGG | + | chr3.4:78142118-78142137 | None:intergenic | 40.0% | |
GTAATCCTTCAAAGCAAGGT+CGG | + | chr3.4:78141213-78141232 | None:intergenic | 40.0% | |
GTTGTAGCATGGATATTGGA+AGG | + | chr3.4:78141461-78141480 | None:intergenic | 40.0% | |
TGCTAAAGAAAATGTTGCGC+AGG | - | chr3.4:78142352-78142371 | MS.gene71285:CDS | 40.0% | |
TTTGTTGGCAACACTTTGGA+TGG | - | chr3.4:78142027-78142046 | MS.gene71285:CDS | 40.0% | |
! | CTGAACTTGTATCAGGGTTT+TGG | - | chr3.4:78142468-78142487 | MS.gene71285:intron | 40.0% |
! | GAGAGTGTGACACATTAGAT+TGG | - | chr3.4:78141767-78141786 | MS.gene71285:intron | 40.0% |
! | GGATGATAGATAGCATCGAA+CGG | + | chr3.4:78141113-78141132 | None:intergenic | 40.0% |
AAAATGTTGCGCAGGGGATT+AGG | - | chr3.4:78142360-78142379 | MS.gene71285:CDS | 45.0% | |
AACTTTCCAGGCCGAAGTAT+GGG | - | chr3.4:78141481-78141500 | MS.gene71285:intron | 45.0% | |
ACCGCAATCGAAACACGATT+CGG | - | chr3.4:78140899-78140918 | MS.gene71285:CDS | 45.0% | |
AGAGGCAACCCATTGCTAAT+AGG | - | chr3.4:78142536-78142555 | MS.gene71285:CDS | 45.0% | |
CCATGCTACAACAACTTTCC+AGG | - | chr3.4:78141469-78141488 | MS.gene71285:intron | 45.0% | |
CCTGGAAAGTTGTTGTAGCA+TGG | + | chr3.4:78141472-78141491 | None:intergenic | 45.0% | |
GAAACAGAGAGATTCAGCCT+AGG | + | chr3.4:78141934-78141953 | None:intergenic | 45.0% | |
GAGAGTAGGACGAAGATCTT+CGG | + | chr3.4:78141180-78141199 | None:intergenic | 45.0% | |
GTCAAGTGTACCACTGCTAT+TGG | - | chr3.4:78141380-78141399 | MS.gene71285:intron | 45.0% | |
TAGCAGTGGTACACTTGACA+AGG | + | chr3.4:78141379-78141398 | None:intergenic | 45.0% | |
TCCGAATCGTGTTTCGATTG+CGG | + | chr3.4:78140903-78140922 | None:intergenic | 45.0% | |
! | AACAGGTTCTAGCATTGCTG+AGG | + | chr3.4:78142163-78142182 | None:intergenic | 45.0% |
! | TGATGATGATGATGCCGATG+AGG | - | chr3.4:78141505-78141524 | MS.gene71285:intron | 45.0% |
!! | CCACATAACTCTAGAACTGC+TGG | + | chr3.4:78141134-78141153 | None:intergenic | 45.0% |
!! | CCAGCAGTTCTAGAGTTATG+TGG | - | chr3.4:78141131-78141150 | MS.gene71285:intron | 45.0% |
CAACTTTCCAGGCCGAAGTA+TGG | - | chr3.4:78141480-78141499 | MS.gene71285:intron | 50.0% | |
CGAGTTTGCGGAAGAGAAAG+AGG | - | chr3.4:78140938-78140957 | MS.gene71285:intron | 50.0% | |
GGCACACGATATGACCTCAT+CGG | + | chr3.4:78141522-78141541 | None:intergenic | 50.0% | |
TCTCTCCGACCTTGCTTTGA+AGG | - | chr3.4:78141205-78141224 | MS.gene71285:intron | 50.0% | |
TGCGGTTGTGATCCCAATTC+AGG | + | chr3.4:78140885-78140904 | None:intergenic | 50.0% | |
! | TGTACCACTGCTATTGGCTG+TGG | - | chr3.4:78141386-78141405 | MS.gene71285:intron | 50.0% |
ACCACCACAGCCAATAGCAG+TGG | + | chr3.4:78141393-78141412 | None:intergenic | 55.0% | |
ATGTTGCGCAGGGGATTAGG+TGG | - | chr3.4:78142363-78142382 | MS.gene71285:CDS | 55.0% | |
CATCATCCCATACTTCGGCC+TGG | + | chr3.4:78141490-78141509 | None:intergenic | 55.0% | |
CGACGACGATGACGAGTTTG+CGG | - | chr3.4:78140926-78140945 | MS.gene71285:CDS | 55.0% | |
TCGGAGAGAGCAACGAGAGT+AGG | + | chr3.4:78141194-78141213 | None:intergenic | 55.0% | |
! | ACCACTGCTATTGGCTGTGG+TGG | - | chr3.4:78141389-78141408 | MS.gene71285:intron | 55.0% |
! | ACTGCTATTGGCTGTGGTGG+TGG | - | chr3.4:78141392-78141411 | MS.gene71285:intron | 55.0% |
! | ATAGCATCGAACGGCTGCGT+TGG | + | chr3.4:78141104-78141123 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 78140873 | 78142621 | 78140873 | ID=MS.gene71285 |
chr3.4 | mRNA | 78140873 | 78142621 | 78140873 | ID=MS.gene71285.t1;Parent=MS.gene71285 |
chr3.4 | exon | 78142484 | 78142621 | 78142484 | ID=MS.gene71285.t1.exon1;Parent=MS.gene71285.t1 |
chr3.4 | CDS | 78142484 | 78142621 | 78142484 | ID=cds.MS.gene71285.t1;Parent=MS.gene71285.t1 |
chr3.4 | exon | 78142247 | 78142384 | 78142247 | ID=MS.gene71285.t1.exon2;Parent=MS.gene71285.t1 |
chr3.4 | CDS | 78142247 | 78142384 | 78142247 | ID=cds.MS.gene71285.t1;Parent=MS.gene71285.t1 |
chr3.4 | exon | 78141998 | 78142141 | 78141998 | ID=MS.gene71285.t1.exon3;Parent=MS.gene71285.t1 |
chr3.4 | CDS | 78141998 | 78142141 | 78141998 | ID=cds.MS.gene71285.t1;Parent=MS.gene71285.t1 |
chr3.4 | exon | 78140873 | 78140956 | 78140873 | ID=MS.gene71285.t1.exon4;Parent=MS.gene71285.t1 |
chr3.4 | CDS | 78140873 | 78140956 | 78140873 | ID=cds.MS.gene71285.t1;Parent=MS.gene71285.t1 |
Gene Sequence |
Protein sequence |