Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72109.t1 | XP_003608793.1 | 86.1 | 137 | 13 | 1 | 1 | 131 | 1 | 137 | 1.30E-57 | 232.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72109.t1 | Q84W04 | 64.2 | 134 | 42 | 1 | 1 | 128 | 1 | 134 | 7.1e-44 | 177.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72109.t1 | G7JK78 | 86.1 | 137 | 13 | 1 | 1 | 131 | 1 | 137 | 9.6e-58 | 232.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene72109 | -0.807638 | 4.58E-50 | -1.69E-46 |
| MS.gene049151 | MS.gene72109 | -0.818935 | 1.51E-52 | -1.69E-46 |
| MS.gene049297 | MS.gene72109 | -0.802731 | 4.88E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene72109 | -0.840818 | 6.92E-58 | -1.69E-46 |
| MS.gene049758 | MS.gene72109 | -0.81649 | 5.38E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene72109 | -0.819399 | 1.19E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene72109 | -0.821005 | 5.08E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene72109 | -0.82302 | 1.73E-53 | -1.69E-46 |
| MS.gene050330 | MS.gene72109 | 0.811854 | 5.69E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene72109 | 0.831885 | 1.29E-55 | -1.69E-46 |
| MS.gene050642 | MS.gene72109 | -0.801563 | 8.49E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene72109 | -0.821833 | 3.27E-53 | -1.69E-46 |
| MS.gene050763 | MS.gene72109 | -0.820691 | 6.00E-53 | -1.69E-46 |
| MS.gene050987 | MS.gene72109 | -0.819535 | 1.10E-52 | -1.69E-46 |
| MS.gene05119 | MS.gene72109 | 0.842335 | 2.75E-58 | -1.69E-46 |
| MS.gene051535 | MS.gene72109 | -0.824165 | 9.36E-54 | -1.69E-46 |
| MS.gene051663 | MS.gene72109 | -0.805925 | 1.05E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene72109 | -0.803911 | 2.78E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene72109 | -0.815976 | 7.02E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene72109 | 0.800021 | 1.75E-48 | -1.69E-46 |
| MS.gene052389 | MS.gene72109 | -0.804556 | 2.04E-49 | -1.69E-46 |
| MS.gene052860 | MS.gene72109 | -0.810371 | 1.19E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene72109 | -0.826147 | 3.18E-54 | -1.69E-46 |
| MS.gene054379 | MS.gene72109 | -0.849768 | 2.62E-60 | -1.69E-46 |
| MS.gene054930 | MS.gene72109 | -0.861846 | 7.70E-64 | -1.69E-46 |
| MS.gene054942 | MS.gene72109 | -0.81544 | 9.23E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene72109 | -0.811157 | 8.06E-51 | -1.69E-46 |
| MS.gene057156 | MS.gene72109 | 0.803369 | 3.60E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene72109 | -0.805746 | 1.15E-49 | -1.69E-46 |
| MS.gene058435 | MS.gene72109 | -0.827882 | 1.22E-54 | -1.69E-46 |
| MS.gene059899 | MS.gene72109 | -0.81124 | 7.73E-51 | -1.69E-46 |
| MS.gene060084 | MS.gene72109 | -0.802735 | 4.87E-49 | -1.69E-46 |
| MS.gene060943 | MS.gene72109 | -0.814226 | 1.72E-51 | -1.69E-46 |
| MS.gene061002 | MS.gene72109 | -0.803322 | 3.68E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72109.t1 | MTR_4g102010 | 91.971 | 137 | 5 | 1 | 1 | 131 | 1 | 137 | 4.64e-87 | 249 |
| MS.gene72109.t1 | MTR_5g011690 | 63.504 | 137 | 44 | 1 | 1 | 131 | 1 | 137 | 2.58e-61 | 184 |
| MS.gene72109.t1 | MTR_7g092530 | 45.217 | 115 | 58 | 1 | 19 | 128 | 27 | 141 | 7.78e-29 | 102 |
| MS.gene72109.t1 | MTR_0311s0030 | 43.548 | 124 | 63 | 2 | 3 | 119 | 4 | 127 | 2.34e-27 | 98.6 |
| MS.gene72109.t1 | MTR_7g074930 | 43.902 | 82 | 40 | 1 | 1 | 76 | 1 | 82 | 3.21e-17 | 72.4 |
| MS.gene72109.t1 | MTR_0311s0030 | 44.048 | 84 | 40 | 2 | 3 | 79 | 4 | 87 | 1.02e-14 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72109.t1 | AT1G12390 | 67.164 | 134 | 38 | 1 | 1 | 128 | 1 | 134 | 4.67e-62 | 186 |
| MS.gene72109.t1 | AT1G12340 | 70.909 | 110 | 32 | 0 | 19 | 128 | 17 | 126 | 3.71e-56 | 171 |
| MS.gene72109.t1 | AT1G62880 | 64.925 | 134 | 41 | 1 | 1 | 128 | 1 | 134 | 5.05e-56 | 171 |
| MS.gene72109.t1 | AT4G12090 | 48.507 | 134 | 63 | 1 | 1 | 128 | 1 | 134 | 2.26e-44 | 142 |
| MS.gene72109.t1 | AT3G12180 | 39.231 | 130 | 73 | 1 | 3 | 126 | 4 | 133 | 1.03e-30 | 107 |
Find 31 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTATTCCTCTCCTTATTT+TGG | 0.153767 | 8.1:+21698859 | MS.gene72109:CDS |
| TCAAGTCACTTACCAAAATA+AGG | 0.225877 | 8.1:-21698871 | None:intergenic |
| ATAAATAAGGATTACAATTA+AGG | 0.272852 | 8.1:-21696660 | None:intergenic |
| GGATTACAATTAAGGCAATA+AGG | 0.316976 | 8.1:-21696652 | None:intergenic |
| TGCGGTTTCTACCTTGTAAC+AGG | 0.332875 | 8.1:+21696977 | MS.gene72109:CDS |
| TGCATCTCGAATAAACAAAA+TGG | 0.334517 | 8.1:+21696922 | MS.gene72109:CDS |
| ATTCGAGATGCAGAATCATA+TGG | 0.395869 | 8.1:-21696911 | None:intergenic |
| ACCAAAATAAGGAGAGGAAT+AGG | 0.409964 | 8.1:-21698860 | None:intergenic |
| GATTACAATTAAGGCAATAA+GGG | 0.439401 | 8.1:-21696651 | None:intergenic |
| TGTAACAGGACACTGGGTTA+TGG | 0.459940 | 8.1:+21696991 | MS.gene72109:CDS |
| AGATATTCAACATGCTCCCT+TGG | 0.463924 | 8.1:+21698793 | MS.gene72109:CDS |
| GATTTATATAATCAAATTCA+AGG | 0.470288 | 8.1:-21696889 | None:intergenic |
| ATTATTTCAGTTAATGTGCC+TGG | 0.472512 | 8.1:+21696862 | MS.gene72109:intron |
| CAGGTTGATCTACACATCAT+TGG | 0.489610 | 8.1:+21698957 | MS.gene72109:intron |
| GATATTCAACATGCTCCCTT+GGG | 0.497374 | 8.1:+21698794 | MS.gene72109:CDS |
| TAAGGCAATAAGGGTGAAGA+AGG | 0.500668 | 8.1:-21696642 | None:intergenic |
| AATCAAATTCAAGGTCTGCC+AGG | 0.521481 | 8.1:-21696880 | None:intergenic |
| GTACAGTCAAGGAAAGCATC+TGG | 0.522881 | 8.1:+21698758 | MS.gene72109:CDS |
| CTACCTTGTAACAGGACACT+GGG | 0.524936 | 8.1:+21696985 | MS.gene72109:CDS |
| TCTACCTTGTAACAGGACAC+TGG | 0.526257 | 8.1:+21696984 | MS.gene72109:CDS |
| TAACCCAGTGTCCTGTTACA+AGG | 0.527314 | 8.1:-21696988 | None:intergenic |
| CTATAATTGTAGTAGAGGTA+AGG | 0.555129 | 8.1:-21697028 | None:intergenic |
| ACAATCTATAATTGTAGTAG+AGG | 0.566636 | 8.1:-21697033 | None:intergenic |
| TCCCTTGGGAAAAGAAGCAA+CGG | 0.596591 | 8.1:+21698808 | MS.gene72109:CDS |
| TTACAAGGTAGAAACCGCAC+AGG | 0.623085 | 8.1:-21696973 | None:intergenic |
| GCAGCTACTGTGATATACTC+AGG | 0.626709 | 8.1:-21696950 | None:intergenic |
| TCACTTACCAAAATAAGGAG+AGG | 0.652566 | 8.1:-21698866 | None:intergenic |
| GTATGGCTGATATATTCGCA+TGG | 0.657296 | 8.1:+21696612 | None:intergenic |
| ACTCTGATCAGGTACAGTCA+AGG | 0.665524 | 8.1:+21698747 | MS.gene72109:intron |
| ATCACAGTAGCTGCCCTGTG+CGG | 0.685904 | 8.1:+21696959 | MS.gene72109:CDS |
| TACAAGGTAGAAACCGCACA+GGG | 0.693755 | 8.1:-21696972 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATTATAATTTTTTTGT+AGG | + | chr8.1:21697747-21697766 | MS.gene72109:intron | 10.0% |
| !! | AAGTTGACTAAAAATAAAAA+GGG | - | chr8.1:21696723-21696742 | None:intergenic | 15.0% |
| !! | ATAAATAAGGATTACAATTA+AGG | - | chr8.1:21696663-21696682 | None:intergenic | 15.0% |
| !! | GATTTATATAATCAAATTCA+AGG | - | chr8.1:21696892-21696911 | None:intergenic | 15.0% |
| !! | TAAAAATAGAGGATTAATTA+AGG | + | chr8.1:21697847-21697866 | MS.gene72109:intron | 15.0% |
| !! | TTGTAAACTTATATACATTA+TGG | - | chr8.1:21698627-21698646 | None:intergenic | 15.0% |
| !!! | TCATTAACAATAAATTTTCA+TGG | - | chr8.1:21697093-21697112 | None:intergenic | 15.0% |
| !! | AAAAACAAAGCTTTACATAA+TGG | - | chr8.1:21696754-21696773 | None:intergenic | 20.0% |
| !! | AAAACAAAGCTTTACATAAT+GGG | - | chr8.1:21696753-21696772 | None:intergenic | 20.0% |
| !! | AGTTGACTAAAAATAAAAAG+GGG | - | chr8.1:21696722-21696741 | None:intergenic | 20.0% |
| !! | TTCTTAGAATCAAAATATCT+AGG | - | chr8.1:21697381-21697400 | None:intergenic | 20.0% |
| !!! | AAATACGACTATTATTTTGA+GGG | - | chr8.1:21698433-21698452 | None:intergenic | 20.0% |
| !!! | AATTGTAATCCTTATTTATC+AGG | + | chr8.1:21696664-21696683 | MS.gene72109:intron | 20.0% |
| !!! | CAAGTTGACTAAAAATAAAA+AGG | - | chr8.1:21696724-21696743 | None:intergenic | 20.0% |
| !!! | GGTTTGATTTATAAAAATAG+AGG | + | chr8.1:21697836-21697855 | MS.gene72109:intron | 20.0% |
| !!! | TATAATGTTTTTGAGAAACA+TGG | + | chr8.1:21697131-21697150 | MS.gene72109:intron | 20.0% |
| !!! | TCATACTTTATTTATTTGCA+AGG | + | chr8.1:21698083-21698102 | MS.gene72109:intron | 20.0% |
| ! | AAACAAAGCTTTACATAATG+GGG | - | chr8.1:21696752-21696771 | None:intergenic | 25.0% |
| ! | AAATACAAAGCAGTATCAAA+AGG | - | chr8.1:21698490-21698509 | None:intergenic | 25.0% |
| ! | AATACAAAGCAGTATCAAAA+GGG | - | chr8.1:21698489-21698508 | None:intergenic | 25.0% |
| ! | ACAAAAACTAAACCAATTTG+TGG | - | chr8.1:21697650-21697669 | None:intergenic | 25.0% |
| ! | ACAATCTATAATTGTAGTAG+AGG | - | chr8.1:21697036-21697055 | None:intergenic | 25.0% |
| ! | AGAACTACCAAATTGAAAAT+TGG | - | chr8.1:21697538-21697557 | None:intergenic | 25.0% |
| ! | ATGCAAGAATTGTAAGTTAA+TGG | - | chr8.1:21698928-21698947 | None:intergenic | 25.0% |
| ! | GAACTACCAAATTGAAAATT+GGG | - | chr8.1:21697537-21697556 | None:intergenic | 25.0% |
| ! | GATTACAATTAAGGCAATAA+GGG | - | chr8.1:21696654-21696673 | None:intergenic | 25.0% |
| ! | GTTGACTAAAAATAAAAAGG+GGG | - | chr8.1:21696721-21696740 | None:intergenic | 25.0% |
| ! | TAATAACAAATACTGTTACC+AGG | - | chr8.1:21698728-21698747 | None:intergenic | 25.0% |
| ! | TACAAAAATAGAGATGATGA+TGG | - | chr8.1:21697981-21698000 | None:intergenic | 25.0% |
| ! | TATAAATCAAACCATGACAT+GGG | - | chr8.1:21697829-21697848 | None:intergenic | 25.0% |
| ! | TCTAGTATAATAAAGCCATA+AGG | + | chr8.1:21697624-21697643 | MS.gene72109:intron | 25.0% |
| ! | TTAAAAAAATCGAACCAATC+AGG | + | chr8.1:21697772-21697791 | MS.gene72109:intron | 25.0% |
| ! | TTATAAATCAAACCATGACA+TGG | - | chr8.1:21697830-21697849 | None:intergenic | 25.0% |
| !! | AACTTTTATGCTGATATAGA+TGG | + | chr8.1:21698524-21698543 | MS.gene72109:intron | 25.0% |
| !! | ATAAATATCACTTCTTTTGC+TGG | - | chr8.1:21697887-21697906 | None:intergenic | 25.0% |
| !! | CAATAGCTGTAATTGTATTT+TGG | + | chr8.1:21698059-21698078 | MS.gene72109:intron | 25.0% |
| !! | TTTAGCTCAATAATTCTACT+GGG | + | chr8.1:21696772-21696791 | MS.gene72109:intron | 25.0% |
| !!! | AACATTTTAGTGTGTTTACA+AGG | + | chr8.1:21698583-21698602 | MS.gene72109:intron | 25.0% |
| !!! | AATACGACTATTATTTTGAG+GGG | - | chr8.1:21698432-21698451 | None:intergenic | 25.0% |
| !!! | CAAATACGACTATTATTTTG+AGG | - | chr8.1:21698434-21698453 | None:intergenic | 25.0% |
| !!! | TATTTGTTATTACTCTGATC+AGG | + | chr8.1:21698736-21698755 | MS.gene72109:intron | 25.0% |
| !!! | TTTTAGCTCAATAATTCTAC+TGG | + | chr8.1:21696771-21696790 | MS.gene72109:intron | 25.0% |
| AAGATAACCAAACAACAAAG+TGG | - | chr8.1:21697565-21697584 | None:intergenic | 30.0% | |
| AATAAAAAGGGGGAAAAGAA+TGG | - | chr8.1:21696711-21696730 | None:intergenic | 30.0% | |
| AATTAGTCATTGTTTGCACT+CGG | + | chr8.1:21697158-21697177 | MS.gene72109:intron | 30.0% | |
| ACCATGATAGCTTAATAAAC+TGG | + | chr8.1:21698685-21698704 | MS.gene72109:intron | 30.0% | |
| ACTTACAATTCTTGCATTTG+CGG | + | chr8.1:21698931-21698950 | MS.gene72109:intron | 30.0% | |
| AGAGTTTGACCTGATAAATA+AGG | - | chr8.1:21696676-21696695 | None:intergenic | 30.0% | |
| ATAAAAAGGGGGAAAAGAAT+GGG | - | chr8.1:21696710-21696729 | None:intergenic | 30.0% | |
| ATTATTTCAGTTAATGTGCC+TGG | + | chr8.1:21696862-21696881 | MS.gene72109:intron | 30.0% | |
| ATTTGGATCTTGGCATTATT+CGG | + | chr8.1:21697212-21697231 | MS.gene72109:intron | 30.0% | |
| CTATAATTGTAGTAGAGGTA+AGG | - | chr8.1:21697031-21697050 | None:intergenic | 30.0% | |
| GGATTACAATTAAGGCAATA+AGG | - | chr8.1:21696655-21696674 | None:intergenic | 30.0% | |
| GTAGTACTCAGTTTATGTAA+AGG | + | chr8.1:21697721-21697740 | MS.gene72109:intron | 30.0% | |
| TACAATTACAGCTATTGCAT+TGG | - | chr8.1:21698056-21698075 | None:intergenic | 30.0% | |
| TCAAGTCACTTACCAAAATA+AGG | - | chr8.1:21698874-21698893 | None:intergenic | 30.0% | |
| TCCAGTTTATTAAGCTATCA+TGG | - | chr8.1:21698689-21698708 | None:intergenic | 30.0% | |
| TGAGTTAGAAATTTGGATCT+TGG | + | chr8.1:21697202-21697221 | MS.gene72109:intron | 30.0% | |
| TGCATCTCGAATAAACAAAA+TGG | + | chr8.1:21696922-21696941 | MS.gene72109:CDS | 30.0% | |
| TTGGTAAGTGACTTGAAAAA+AGG | + | chr8.1:21698878-21698897 | MS.gene72109:intron | 30.0% | |
| ! | AAATCTCATCCATGTTTTCT+GGG | + | chr8.1:21698311-21698330 | MS.gene72109:intron | 30.0% |
| ! | ATTCTAAGAAACTTCTTCAC+GGG | + | chr8.1:21697391-21697410 | MS.gene72109:intron | 30.0% |
| ! | GATTCTAAGAAACTTCTTCA+CGG | + | chr8.1:21697390-21697409 | MS.gene72109:intron | 30.0% |
| ! | GGTAGTTTGAGTTAGAAATT+TGG | + | chr8.1:21697195-21697214 | MS.gene72109:intron | 30.0% |
| ! | GTTCAACCCAATTTTCAATT+TGG | + | chr8.1:21697528-21697547 | MS.gene72109:intron | 30.0% |
| ! | TAAATCTCATCCATGTTTTC+TGG | + | chr8.1:21698310-21698329 | MS.gene72109:intron | 30.0% |
| ! | TTGAAAGAATTTTGTGTCTC+TGG | + | chr8.1:21697451-21697470 | MS.gene72109:intron | 30.0% |
| !! | ACTTTGTTGTTTGGTTATCT+TGG | + | chr8.1:21697564-21697583 | MS.gene72109:intron | 30.0% |
| !! | ATTTTTGTTTCATGCACCAA+GGG | - | chr8.1:21698027-21698046 | None:intergenic | 30.0% |
| !! | CAACAACAATAGGTCATTTT+CGG | - | chr8.1:21698371-21698390 | None:intergenic | 30.0% |
| !! | GTTTGTTGTAATTGCTAAGT+AGG | + | chr8.1:21698258-21698277 | MS.gene72109:intron | 30.0% |
| !!! | TCTTTTTCCACTTTGTTGTT+TGG | + | chr8.1:21697555-21697574 | MS.gene72109:intron | 30.0% |
| !!! | TTGGTTTGGTTTGATTTTCT+GGG | + | chr8.1:21697583-21697602 | MS.gene72109:intron | 30.0% |
| AAACTGGAATGTGCTTAGTA+TGG | + | chr8.1:21698701-21698720 | MS.gene72109:intron | 35.0% | |
| ACCAAAATAAGGAGAGGAAT+AGG | - | chr8.1:21698863-21698882 | None:intergenic | 35.0% | |
| ACTTTATAGCGCTATCAAAC+TGG | - | chr8.1:21697304-21697323 | None:intergenic | 35.0% | |
| AGAAGATCTAGAAAAGAGTG+AGG | - | chr8.1:21697678-21697697 | None:intergenic | 35.0% | |
| ATTCGAGATGCAGAATCATA+TGG | - | chr8.1:21696914-21696933 | None:intergenic | 35.0% | |
| GTTGTTTGGTTATCTTGGTT+TGG | + | chr8.1:21697569-21697588 | MS.gene72109:intron | 35.0% | |
| TCACTTACCAAAATAAGGAG+AGG | - | chr8.1:21698869-21698888 | None:intergenic | 35.0% | |
| TCATGTGTGATCAGTAGTTT+GGG | + | chr8.1:21697421-21697440 | MS.gene72109:intron | 35.0% | |
| TGCACTTCTTCACAATATCA+AGG | - | chr8.1:21698146-21698165 | None:intergenic | 35.0% | |
| TTCATGTGTGATCAGTAGTT+TGG | + | chr8.1:21697420-21697439 | MS.gene72109:intron | 35.0% | |
| TTTAGTAAGATCCCATGTCA+TGG | + | chr8.1:21697815-21697834 | MS.gene72109:intron | 35.0% | |
| ! | AATCTCATCCATGTTTTCTG+GGG | + | chr8.1:21698312-21698331 | MS.gene72109:intron | 35.0% |
| ! | CTTGGTGCATGAAACAAAAA+TGG | + | chr8.1:21698026-21698045 | MS.gene72109:intron | 35.0% |
| ! | TAAACCAATTTGTGGCCTTA+TGG | - | chr8.1:21697642-21697661 | None:intergenic | 35.0% |
| ! | TTCTAAGAAACTTCTTCACG+GGG | + | chr8.1:21697392-21697411 | MS.gene72109:intron | 35.0% |
| !! | CATTTTTGTTTCATGCACCA+AGG | - | chr8.1:21698028-21698047 | None:intergenic | 35.0% |
| !! | TCCTATTCCTCTCCTTATTT+TGG | + | chr8.1:21698859-21698878 | MS.gene72109:CDS | 35.0% |
| !!! | ACAGTTTTGGATGTGTTCAT+TGG | + | chr8.1:21698283-21698302 | MS.gene72109:intron | 35.0% |
| !!! | CTTGGTTTGGTTTGATTTTC+TGG | + | chr8.1:21697582-21697601 | MS.gene72109:intron | 35.0% |
| !!! | TGGTTTGGTTTGATTTTCTG+GGG | + | chr8.1:21697584-21697603 | MS.gene72109:intron | 35.0% |
| AAAGCCATAAGGCCACAAAT+TGG | + | chr8.1:21697635-21697654 | MS.gene72109:intron | 40.0% | |
| AATCAAATTCAAGGTCTGCC+AGG | - | chr8.1:21696883-21696902 | None:intergenic | 40.0% | |
| AGAGTTGCTGCAACAACAAT+AGG | - | chr8.1:21698381-21698400 | None:intergenic | 40.0% | |
| AGATATTCAACATGCTCCCT+TGG | + | chr8.1:21698793-21698812 | MS.gene72109:CDS | 40.0% | |
| CACTCGGATTTATGAGTGAA+TGG | + | chr8.1:21697174-21697193 | MS.gene72109:intron | 40.0% | |
| GAAAGAAGTGACAATACCCT+TGG | + | chr8.1:21698008-21698027 | MS.gene72109:intron | 40.0% | |
| GATATTCAACATGCTCCCTT+GGG | + | chr8.1:21698794-21698813 | MS.gene72109:CDS | 40.0% | |
| TAAGGCAATAAGGGTGAAGA+AGG | - | chr8.1:21696645-21696664 | None:intergenic | 40.0% | |
| TAGCGCTATAAAGTACGTGT+TGG | + | chr8.1:21697310-21697329 | MS.gene72109:intron | 40.0% | |
| ! | ATCTCATCCATGTTTTCTGG+GGG | + | chr8.1:21698313-21698332 | MS.gene72109:intron | 40.0% |
| ! | GTCAAGTTTGGTTCAGTTTG+AGG | - | chr8.1:21697959-21697978 | None:intergenic | 40.0% |
| ! | TAATCTGAGTACTGCTGCTA+GGG | - | chr8.1:21697919-21697938 | None:intergenic | 40.0% |
| ! | TGCTAAGTAGGCTACAGTTT+TGG | + | chr8.1:21698270-21698289 | MS.gene72109:intron | 40.0% |
| ! | TTAATCTGAGTACTGCTGCT+AGG | - | chr8.1:21697920-21697939 | None:intergenic | 40.0% |
| !! | ACGTGTTGGTTGATGTTTCA+TGG | + | chr8.1:21697324-21697343 | MS.gene72109:intron | 40.0% |
| !! | CAGGTTGATCTACACATCAT+TGG | + | chr8.1:21698957-21698976 | MS.gene72109:intron | 40.0% |
| !! | GAGATGATGATGGTCAAGTT+TGG | - | chr8.1:21697971-21697990 | None:intergenic | 40.0% |
| !! | GGGGAAAAGAATGGGTTAAA+GGG | - | chr8.1:21696702-21696721 | None:intergenic | 40.0% |
| ACTCTGATCAGGTACAGTCA+AGG | + | chr8.1:21698747-21698766 | MS.gene72109:intron | 45.0% | |
| CATATCTCCCCCAGAAAACA+TGG | - | chr8.1:21698323-21698342 | None:intergenic | 45.0% | |
| CCTGCACTCGAGTTATAAAG+CGG | - | chr8.1:21697483-21697502 | None:intergenic | 45.0% | |
| CTACCTTGTAACAGGACACT+GGG | + | chr8.1:21696985-21697004 | MS.gene72109:CDS | 45.0% | |
| GAATGTGCTTAGTATGGTCC+TGG | + | chr8.1:21698707-21698726 | MS.gene72109:intron | 45.0% | |
| GATGCGACTGCAATTGATCA+TGG | + | chr8.1:21698179-21698198 | MS.gene72109:intron | 45.0% | |
| GCAGCTACTGTGATATACTC+AGG | - | chr8.1:21696953-21696972 | None:intergenic | 45.0% | |
| GTGATCAGTAGTTTGGGTGA+GGG | + | chr8.1:21697427-21697446 | MS.gene72109:intron | 45.0% | |
| TAACCCAGTGTCCTGTTACA+AGG | - | chr8.1:21696991-21697010 | None:intergenic | 45.0% | |
| TACAAGGTAGAAACCGCACA+GGG | - | chr8.1:21696975-21696994 | None:intergenic | 45.0% | |
| TCCCTTGGGAAAAGAAGCAA+CGG | + | chr8.1:21698808-21698827 | MS.gene72109:CDS | 45.0% | |
| TCTACCTTGTAACAGGACAC+TGG | + | chr8.1:21696984-21697003 | MS.gene72109:CDS | 45.0% | |
| TGCGGTTTCTACCTTGTAAC+AGG | + | chr8.1:21696977-21696996 | MS.gene72109:CDS | 45.0% | |
| TGTAACAGGACACTGGGTTA+TGG | + | chr8.1:21696991-21697010 | MS.gene72109:CDS | 45.0% | |
| TGTGATCAGTAGTTTGGGTG+AGG | + | chr8.1:21697426-21697445 | MS.gene72109:intron | 45.0% | |
| TTACAAGGTAGAAACCGCAC+AGG | - | chr8.1:21696976-21696995 | None:intergenic | 45.0% | |
| ! | AATCTGAGTACTGCTGCTAG+GGG | - | chr8.1:21697918-21697937 | None:intergenic | 45.0% |
| !! | GGGGGAAAAGAATGGGTTAA+AGG | - | chr8.1:21696703-21696722 | None:intergenic | 45.0% |
| !! | GTACAGTCAAGGAAAGCATC+TGG | + | chr8.1:21698758-21698777 | MS.gene72109:CDS | 45.0% |
| ACTGAACCACTGCTCCTGAT+TGG | - | chr8.1:21697789-21697808 | None:intergenic | 50.0% | |
| ATCGAACCAATCAGGAGCAG+TGG | + | chr8.1:21697780-21697799 | MS.gene72109:intron | 50.0% | |
| ATTCTTGCATTTGCGGCTGC+AGG | + | chr8.1:21698938-21698957 | MS.gene72109:intron | 50.0% | |
| CCGCTTTATAACTCGAGTGC+AGG | + | chr8.1:21697480-21697499 | MS.gene72109:intron | 50.0% | |
| TTGAGGGGACTGTGCTTCTA+TGG | - | chr8.1:21698417-21698436 | None:intergenic | 50.0% | |
| ! | AGCCGTTGCTTCTTTTCCCA+AGG | - | chr8.1:21698813-21698832 | None:intergenic | 50.0% |
| ! | ATCTGAGTACTGCTGCTAGG+GGG | - | chr8.1:21697917-21697936 | None:intergenic | 50.0% |
| ! | GCCGTTGCTTCTTTTCCCAA+GGG | - | chr8.1:21698812-21698831 | None:intergenic | 50.0% |
| ATCACAGTAGCTGCCCTGTG+CGG | + | chr8.1:21696959-21696978 | MS.gene72109:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 21696614 | 21698996 | 21696614 | ID=MS.gene72109 |
| chr8.1 | mRNA | 21696614 | 21698996 | 21696614 | ID=MS.gene72109.t1;Parent=MS.gene72109 |
| chr8.1 | exon | 21696614 | 21696667 | 21696614 | ID=MS.gene72109.t1.exon1;Parent=MS.gene72109.t1 |
| chr8.1 | CDS | 21696614 | 21696667 | 21696614 | ID=cds.MS.gene72109.t1;Parent=MS.gene72109.t1 |
| chr8.1 | exon | 21696872 | 21697053 | 21696872 | ID=MS.gene72109.t1.exon2;Parent=MS.gene72109.t1 |
| chr8.1 | CDS | 21696872 | 21697053 | 21696872 | ID=cds.MS.gene72109.t1;Parent=MS.gene72109.t1 |
| chr8.1 | exon | 21698758 | 21698880 | 21698758 | ID=MS.gene72109.t1.exon3;Parent=MS.gene72109.t1 |
| chr8.1 | CDS | 21698758 | 21698880 | 21698758 | ID=cds.MS.gene72109.t1;Parent=MS.gene72109.t1 |
| chr8.1 | exon | 21698960 | 21698996 | 21698960 | ID=MS.gene72109.t1.exon4;Parent=MS.gene72109.t1 |
| chr8.1 | CDS | 21698960 | 21698996 | 21698960 | ID=cds.MS.gene72109.t1;Parent=MS.gene72109.t1 |
| Gene Sequence |
| Protein sequence |
