AlfalfaGEDB | MS.gene060943

M. sativa cultivar XinJiangDaYe / MS.gene060943

KEGG: K20896
GO: -
PFAM: PF03070.19

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060943.t1	XP_003609761.1	97.1	105	3	0	1	105	16	120	6.10E-53	216.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060943.t1	Q9SWB6	81.0	105	20	0	1	105	14	118	1.2e-44	180.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060943.t1	G7JMU3	97.1	105	3	0	1	105	16	120	4.4e-53	216.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049151	MS.gene060943	0.816597	5.09E-52	-1.69E-46
MS.gene049378	MS.gene060943	0.80343	3.50E-49	-1.69E-46
MS.gene049758	MS.gene060943	0.808	3.84E-50	-1.69E-46
MS.gene050128	MS.gene060943	0.817435	3.30E-52	-1.69E-46
MS.gene050762	MS.gene060943	0.833058	6.63E-56	-1.69E-46
MS.gene050763	MS.gene060943	0.83451	2.87E-56	-1.69E-46
MS.gene052077	MS.gene060943	0.807911	4.01E-50	-1.69E-46
MS.gene05316	MS.gene060943	0.816089	6.62E-52	-1.69E-46
MS.gene053494	MS.gene060943	0.838509	2.76E-57	-1.69E-46
MS.gene053577	MS.gene060943	0.801417	9.09E-49	-1.69E-46
MS.gene054379	MS.gene060943	0.849223	3.71E-60	-1.69E-46
MS.gene054930	MS.gene060943	0.815996	6.94E-52	-1.69E-46
MS.gene055701	MS.gene060943	0.810904	9.14E-51	-1.69E-46
MS.gene057448	MS.gene060943	0.808758	2.65E-50	-1.69E-46
MS.gene057450	MS.gene060943	0.812937	3.30E-51	-1.69E-46
MS.gene058435	MS.gene060943	0.808616	2.84E-50	-1.69E-46
MS.gene060084	MS.gene060943	0.807062	6.07E-50	-1.69E-46
MS.gene060495	MS.gene060943	0.822483	2.31E-53	-1.69E-46
MS.gene060940	MS.gene060943	0.911657	4.74E-83	-1.69E-46
MS.gene060942	MS.gene060943	0.880584	4.86E-70	-1.69E-46
MS.gene060943	MS.gene060998	0.833525	5.07E-56	-1.69E-46
MS.gene060943	MS.gene061002	0.932263	1.11E-94	-1.69E-46
MS.gene060943	MS.gene065164	0.815039	1.13E-51	-1.69E-46
MS.gene060943	MS.gene065926	0.817925	2.56E-52	-1.69E-46
MS.gene060943	MS.gene06652	0.830601	2.68E-55	-1.69E-46
MS.gene060943	MS.gene069679	0.825878	3.69E-54	-1.69E-46
MS.gene060943	MS.gene069680	0.81435	1.61E-51	-1.69E-46
MS.gene060943	MS.gene069681	0.812009	5.26E-51	-1.69E-46
MS.gene060943	MS.gene070491	0.83465	2.65E-56	-1.69E-46
MS.gene060943	MS.gene071343	0.804745	1.86E-49	-1.69E-46
MS.gene060943	MS.gene071407	0.815083	1.11E-51	-1.69E-46
MS.gene060943	MS.gene072087	-0.802946	4.41E-49	-1.69E-46
MS.gene060943	MS.gene072564	0.807305	5.39E-50	-1.69E-46
MS.gene060943	MS.gene072565	0.807523	4.85E-50	-1.69E-46
MS.gene060943	MS.gene074091	0.821369	4.19E-53	-1.69E-46
MS.gene060943	MS.gene074393	-0.809139	2.19E-50	-1.69E-46
MS.gene060943	MS.gene08486	0.808757	2.65E-50	-1.69E-46
MS.gene060943	MS.gene08691	0.81333	2.70E-51	-1.69E-46
MS.gene060943	MS.gene08753	0.802437	5.61E-49	-1.69E-46
MS.gene060943	MS.gene08779	0.814138	1.79E-51	-1.69E-46
MS.gene060943	MS.gene23318	0.816443	5.52E-52	-1.69E-46
MS.gene060943	MS.gene24158	0.800862	1.18E-48	-1.69E-46
MS.gene060943	MS.gene24227	0.810806	9.60E-51	-1.69E-46
MS.gene060943	MS.gene25913	-0.805109	1.56E-49	-1.69E-46
MS.gene060943	MS.gene26485	0.805884	1.08E-49	-1.69E-46
MS.gene060943	MS.gene26514	0.851976	6.25E-61	-1.69E-46
MS.gene060943	MS.gene27008	0.827899	1.21E-54	-1.69E-46
MS.gene060943	MS.gene27271	0.818291	2.12E-52	-1.69E-46
MS.gene060943	MS.gene27393	0.823952	1.05E-53	-1.69E-46
MS.gene060943	MS.gene28525	0.811989	5.31E-51	-1.69E-46
MS.gene060943	MS.gene28694	0.815052	1.13E-51	-1.69E-46
MS.gene060943	MS.gene29000	0.818206	2.21E-52	-1.69E-46
MS.gene060943	MS.gene29405	0.82471	6.96E-54	-1.69E-46
MS.gene060943	MS.gene29986	0.819195	1.32E-52	-1.69E-46
MS.gene060943	MS.gene31116	0.803005	4.28E-49	-1.69E-46
MS.gene060943	MS.gene31609	0.821244	4.48E-53	-1.69E-46
MS.gene060943	MS.gene32657	0.808597	2.86E-50	-1.69E-46
MS.gene060943	MS.gene33065	0.821041	4.98E-53	-1.69E-46
MS.gene060943	MS.gene34187	0.800739	1.25E-48	-1.69E-46
MS.gene060943	MS.gene34800	0.802808	4.71E-49	-1.69E-46
MS.gene060943	MS.gene35523	0.80104	1.09E-48	-1.69E-46
MS.gene060943	MS.gene37910	0.806221	9.14E-50	-1.69E-46
MS.gene060943	MS.gene39638	0.851781	7.10E-61	-1.69E-46
MS.gene060943	MS.gene41037	0.828295	9.73E-55	-1.69E-46
MS.gene060943	MS.gene42831	0.801952	7.06E-49	-1.69E-46
MS.gene060943	MS.gene43782	0.804142	2.49E-49	-1.69E-46
MS.gene060943	MS.gene45171	0.811368	7.25E-51	-1.69E-46
MS.gene060943	MS.gene45533	0.815259	1.01E-51	-1.69E-46
MS.gene060943	MS.gene51067	0.801372	9.29E-49	-1.69E-46
MS.gene060943	MS.gene52448	0.822272	2.59E-53	-1.69E-46
MS.gene060943	MS.gene52512	0.819347	1.22E-52	-1.69E-46
MS.gene060943	MS.gene55505	0.822039	2.93E-53	-1.69E-46
MS.gene060943	MS.gene56053	0.804285	2.32E-49	-1.69E-46
MS.gene060943	MS.gene56431	0.802367	5.80E-49	-1.69E-46
MS.gene060943	MS.gene56488	0.82373	1.18E-53	-1.69E-46
MS.gene060943	MS.gene58676	0.820872	5.45E-53	-1.69E-46
MS.gene060943	MS.gene59149	0.848171	7.27E-60	-1.69E-46
MS.gene060943	MS.gene62587	0.800911	1.15E-48	-1.69E-46
MS.gene060943	MS.gene62623	0.827263	1.72E-54	-1.69E-46
MS.gene060943	MS.gene63058	0.802187	6.32E-49	-1.69E-46
MS.gene060943	MS.gene64994	0.816598	5.09E-52	-1.69E-46
MS.gene060943	MS.gene68528	0.806314	8.74E-50	-1.69E-46
MS.gene060943	MS.gene69027	0.80464	1.96E-49	-1.69E-46
MS.gene060943	MS.gene70101	0.808385	3.18E-50	-1.69E-46
MS.gene060943	MS.gene70102	0.813782	2.15E-51	-1.69E-46
MS.gene060943	MS.gene70586	-0.800326	1.52E-48	-1.69E-46
MS.gene060943	MS.gene70819	0.803002	4.29E-49	-1.69E-46
MS.gene060943	MS.gene72109	-0.814226	1.72E-51	-1.69E-46
MS.gene060943	MS.gene74443	0.812246	4.67E-51	-1.69E-46
MS.gene060943	MS.gene75614	0.855815	4.90E-62	-1.69E-46
MS.gene060943	MS.gene78205	0.836938	6.98E-57	-1.69E-46
MS.gene060943	MS.gene79479	0.809745	1.63E-50	-1.69E-46
MS.gene060943	MS.gene80233	0.812426	4.26E-51	-1.69E-46
MS.gene060943	MS.gene80298	0.826895	2.11E-54	-1.69E-46
MS.gene060943	MS.gene81066	0.820975	5.16E-53	-1.69E-46
MS.gene060943	MS.gene81602	0.818667	1.74E-52	-1.69E-46
MS.gene060943	MS.gene81687	0.81614	6.45E-52	-1.69E-46
MS.gene060943	MS.gene81689	0.801086	1.06E-48	-1.69E-46
MS.gene060943	MS.gene82350	0.800291	1.54E-48	-1.69E-46
MS.gene060943	MS.gene82358	0.811325	7.41E-51	-1.69E-46
MS.gene060943	MS.gene82978	0.806466	8.11E-50	-1.69E-46
MS.gene060943	MS.gene84401	0.845196	4.72E-59	-1.69E-46
MS.gene060943	MS.gene84457	0.802751	4.83E-49	-1.69E-46
MS.gene060943	MS.gene84523	0.802075	6.66E-49	-1.69E-46
MS.gene060943	MS.gene87170	0.816449	5.50E-52	-1.69E-46
MS.gene060943	MS.gene88755	0.800035	1.74E-48	-1.69E-46
MS.gene060943	MS.gene89434	0.807969	3.90E-50	-1.69E-46
MS.gene060943	MS.gene93890	0.823126	1.64E-53	-1.69E-46
MS.gene060943	MS.gene94150	0.813319	2.72E-51	-1.69E-46
MS.gene060943	MS.gene96220	0.809887	1.52E-50	-1.69E-46
MS.gene060943	MS.gene96799	0.809774	1.60E-50	-1.69E-46
MS.gene060943	MS.gene97270	0.847502	1.11E-59	-1.69E-46
MS.gene060943	MS.gene99466	0.810995	8.73E-51	-1.69E-46
MS.gene060943	MS.gene99874	0.805264	1.45E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060943.t1	MTR_4g121940	96.226	106	4	0	1	106	16	121	1.36e-72	215

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060943.t1	AT3G16990	66.038	106	36	0	1	106	6	111	5.70e-49	155

Find 0 sgRNAs with CRISPR-Local

Find 26 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TCAATTTATTTCAATTTTGC+AGG	-	32441:9607-9626	MS.gene060943:CDS	20.0%
	AATCTCATTCCTTCAAAACA+TGG	-	32441:9528-9547	MS.gene060943:CDS	30.0%
	CTCTCAAGGATGAAATATTA+TGG	-	32441:9747-9766	MS.gene060943:CDS	30.0%
	GATGATGTGGAAGTTATATT+GGG	-	32441:9713-9732	MS.gene060943:intron	30.0%
	TTTGAAGGAATGAGATTGAA+CGG	+	32441:9525-9544	None:intergenic	30.0%
!	TGATGATGTGGAAGTTATAT+TGG	-	32441:9712-9731	MS.gene060943:intron	30.0%
	TAAGAGAGAAGCCAACAAAT+GGG	-	32441:9772-9791	MS.gene060943:CDS	35.0%
	TTAAGAGAGAAGCCAACAAA+TGG	-	32441:9771-9790	MS.gene060943:CDS	35.0%
!	TATTTCAATTTTGCAGGCTC+AGG	-	32441:9613-9632	MS.gene060943:CDS	35.0%
	AAGAGAGAAGCCAACAAATG+GGG	-	32441:9773-9792	MS.gene060943:CDS	40.0%
	ATCAGCACACTAGCAACAAA+TGG	+	32441:9665-9684	None:intergenic	40.0%
	CACGGATGGAGAGAATAAAA+GGG	+	32441:9496-9515	None:intergenic	40.0%
	GAGTGAAATACCCCATTTGT+TGG	+	32441:9786-9805	None:intergenic	40.0%
	GATGTGGAAGTTATATTGGG+AGG	-	32441:9716-9735	MS.gene060943:CDS	40.0%
	GGAAGTTATATTGGGAGGTA+TGG	-	32441:9721-9740	MS.gene060943:CDS	40.0%
	TCACGGATGGAGAGAATAAA+AGG	+	32441:9497-9516	None:intergenic	40.0%
	TTTATTCTCTCCATCCGTGA+TGG	-	32441:9497-9516	MS.gene060943:CDS	40.0%
!	ATCAGATGACAGTGATGATG+TGG	-	32441:9700-9719	MS.gene060943:intron	40.0%
!!	ACTTACGAGCCATGTTTTGA+AGG	+	32441:9540-9559	None:intergenic	40.0%
!!	TGTGCTGATTAAAGCTTGCA+AGG	-	32441:9676-9695	MS.gene060943:intron	40.0%
!!	GGAGAGAATAAAAGGGTGTC+TGG	+	32441:9489-9508	None:intergenic	45.0%
	TTGCTGCGTCGTAGATAGGA+CGG	+	32441:9466-9485	None:intergenic	50.0%
!!	GAGATTGAACGGTGCCATCA+CGG	+	32441:9514-9533	None:intergenic	50.0%
	CTGGTTGCTGCGTCGTAGAT+AGG	+	32441:9470-9489	None:intergenic	55.0%
!	GGGAGGTATGGCTTCTCTCA+AGG	-	32441:9733-9752	MS.gene060943:CDS	55.0%
!!	TTGAACGGTGCCATCACGGA+TGG	+	32441:9510-9529	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
32441	gene	9437	9832	9437	ID=MS.gene060943
32441	mRNA	9437	9832	9437	ID=MS.gene060943.t1;Parent=MS.gene060943
32441	exon	9716	9832	9716	ID=MS.gene060943.t1.exon1;Parent=MS.gene060943.t1
32441	CDS	9716	9832	9716	ID=cds.MS.gene060943.t1;Parent=MS.gene060943.t1
32441	exon	9437	9640	9437	ID=MS.gene060943.t1.exon2;Parent=MS.gene060943.t1
32441	CDS	9437	9640	9437	ID=cds.MS.gene060943.t1;Parent=MS.gene060943.t1

Gene Sequence

>MS.gene060943

ATGACAGAAACATGGTTGAGGAAACACCGTCCTATCTACGACGCAGCAACCAGACACCCTTTTATTCTCTCCATCCGTGATGGCACCGTTCAATCTCATTCCTTCAAAACATGGCTCGTAAGTAATTTTCAATACATCTCTCTCTTCTCTTTTTATTAGTATCATTTTTTTCAATTTATTTCAATTTTGCAGGCTCAGGATTACTTGTTTGTTAGAGAGTTTGTTCCATTTGTTGCTAGTGTGCTGATTAAAGCTTGCAAGGAATCAGATGACAGTGATGATGTGGAAGTTATATTGGGAGGTATGGCTTCTCTCAAGGATGAAATATTATGGTTTAAGAGAGAAGCCAACAAATGGGGTATTTCACTCTCAGACGTTGTTCCTCAAAAAACCTAA

Protein sequence

>MS.gene060943.t1

MTETWLRKHRPIYDAATRHPFILSIRDGTVQSHSFKTWLAQDYLFVREFVPFVASVLIKACKESDDSDDVEVILGGMASLKDEILWFKREANKWGISLSDVVPQKT