Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72151.t1 | AFK47457.1 | 95.6 | 250 | 11 | 0 | 1 | 250 | 1 | 250 | 2.40E-132 | 481.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72151.t1 | Q9ZRT5 | 71.3 | 223 | 64 | 0 | 1 | 223 | 2 | 224 | 1.8e-91 | 337.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72151.t1 | I3T4L5 | 95.6 | 250 | 11 | 0 | 1 | 250 | 1 | 250 | 1.7e-132 | 481.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69499 | MS.gene72151 | PPI |
| MS.gene000510 | MS.gene72151 | PPI |
| MS.gene69505 | MS.gene72151 | PPI |
| MS.gene72151 | MS.gene48030 | PPI |
| MS.gene038277 | MS.gene72151 | PPI |
| MS.gene72151 | MS.gene83384 | PPI |
| MS.gene72151 | MS.gene48032 | PPI |
| MS.gene72151 | MS.gene017062 | PPI |
| MS.gene019181 | MS.gene72151 | PPI |
| MS.gene017060 | MS.gene72151 | PPI |
| MS.gene019183 | MS.gene72151 | PPI |
| MS.gene22188 | MS.gene72151 | PPI |
| MS.gene47714 | MS.gene72151 | PPI |
| MS.gene22196 | MS.gene72151 | PPI |
| MS.gene22195 | MS.gene72151 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72151.t1 | MTR_8g098420 | 95.200 | 250 | 12 | 0 | 1 | 250 | 1 | 250 | 2.27e-179 | 493 |
| MS.gene72151.t1 | MTR_8g098420 | 96.133 | 181 | 7 | 0 | 1 | 181 | 1 | 181 | 1.70e-127 | 359 |
| MS.gene72151.t1 | MTR_8g098430 | 69.565 | 230 | 70 | 0 | 2 | 231 | 4 | 233 | 5.50e-121 | 345 |
| MS.gene72151.t1 | MTR_3g450930 | 31.579 | 171 | 113 | 3 | 1 | 171 | 1 | 167 | 5.85e-19 | 82.8 |
| MS.gene72151.t1 | MTR_3g450790 | 27.907 | 215 | 147 | 5 | 1 | 215 | 1 | 207 | 3.85e-18 | 80.5 |
| MS.gene72151.t1 | MTR_3g064700 | 27.143 | 210 | 146 | 3 | 1 | 210 | 1 | 203 | 2.07e-14 | 70.5 |
| MS.gene72151.t1 | MTR_5g090920 | 25.346 | 217 | 151 | 7 | 1 | 215 | 1 | 208 | 1.24e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72151.t1 | AT5G41210 | 71.300 | 223 | 64 | 0 | 1 | 223 | 2 | 224 | 3.87e-121 | 345 |
| MS.gene72151.t1 | AT5G41240 | 70.354 | 226 | 67 | 0 | 1 | 226 | 1 | 226 | 1.90e-114 | 340 |
| MS.gene72151.t1 | AT5G41220 | 68.000 | 225 | 72 | 0 | 1 | 225 | 1 | 225 | 1.17e-110 | 330 |
| MS.gene72151.t1 | AT5G41220 | 66.474 | 173 | 58 | 0 | 53 | 225 | 3 | 175 | 1.13e-81 | 254 |
| MS.gene72151.t1 | AT5G41220 | 65.217 | 161 | 56 | 0 | 65 | 225 | 7 | 167 | 4.01e-74 | 234 |
| MS.gene72151.t1 | AT2G30870 | 32.164 | 171 | 112 | 3 | 1 | 171 | 1 | 167 | 1.64e-22 | 92.4 |
| MS.gene72151.t1 | AT2G30860 | 31.579 | 171 | 113 | 3 | 1 | 171 | 1 | 167 | 2.35e-19 | 84.0 |
| MS.gene72151.t1 | AT2G30860 | 30.405 | 148 | 102 | 1 | 1 | 148 | 1 | 147 | 1.61e-18 | 80.5 |
| MS.gene72151.t1 | AT1G02920 | 30.732 | 205 | 124 | 5 | 3 | 201 | 4 | 196 | 3.13e-16 | 75.5 |
| MS.gene72151.t1 | AT1G02930 | 32.484 | 157 | 103 | 2 | 3 | 159 | 4 | 157 | 1.75e-15 | 73.2 |
| MS.gene72151.t1 | AT1G02930 | 32.484 | 157 | 103 | 2 | 3 | 159 | 4 | 157 | 1.75e-15 | 73.2 |
| MS.gene72151.t1 | AT1G49860 | 29.319 | 191 | 126 | 5 | 19 | 205 | 20 | 205 | 9.34e-15 | 72.0 |
| MS.gene72151.t1 | AT2G02930 | 29.412 | 204 | 131 | 5 | 3 | 201 | 4 | 199 | 1.16e-13 | 68.2 |
| MS.gene72151.t1 | AT3G03190 | 30.814 | 172 | 114 | 3 | 1 | 171 | 1 | 168 | 1.82e-13 | 67.8 |
| MS.gene72151.t1 | AT4G02520 | 27.723 | 202 | 137 | 4 | 3 | 201 | 4 | 199 | 2.31e-13 | 67.4 |
| MS.gene72151.t1 | AT5G17220 | 32.558 | 172 | 111 | 4 | 1 | 171 | 1 | 168 | 4.04e-13 | 67.0 |
Find 63 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGTACTAGCTCCATTAT+TGG | 0.222340 | 4.1:-6174389 | MS.gene72151:CDS |
| AATGATTATGATCGTCTTCT+TGG | 0.230358 | 4.1:-6174023 | MS.gene72151:CDS |
| TATCTTGCTTCTGCATTTCC+TGG | 0.241180 | 4.1:-6175327 | MS.gene72151:CDS |
| AATCACATTCTCGAAGTTAT+AGG | 0.255543 | 4.1:+6173843 | None:intergenic |
| ATCACATTCTCGAAGTTATA+GGG | 0.262925 | 4.1:+6173844 | None:intergenic |
| CTGCTCCACGGCGCAAATTC+AGG | 0.298815 | 4.1:+6174906 | None:intergenic |
| ATAGAGAACATTTGGCTTAA+GGG | 0.303430 | 4.1:-6174301 | MS.gene72151:CDS |
| GGTACCCAGCTGACGTTTCC+AGG | 0.325552 | 4.1:-6174964 | MS.gene72151:CDS |
| AATAGAGAACATTTGGCTTA+AGG | 0.353062 | 4.1:-6174302 | MS.gene72151:CDS |
| CTGAATTTGCGCCGTGGAGC+AGG | 0.368387 | 4.1:-6174905 | MS.gene72151:intron |
| ACAGATGGGGAAATGAAATC+TGG | 0.378165 | 4.1:-6173876 | MS.gene72151:CDS |
| CTGCGAAATTATGCAATTAC+AGG | 0.378649 | 4.1:-6174221 | MS.gene72151:intron |
| TGTCCACAATAGAGAACATT+TGG | 0.391398 | 4.1:-6174309 | MS.gene72151:CDS |
| CACTTATCTTCTGAGTTTCA+AGG | 0.400481 | 4.1:-6175867 | MS.gene72151:intron |
| CGCGTGAATTCTAGCTCTCC+TGG | 0.415990 | 4.1:+6174946 | None:intergenic |
| ACTGTACTAGCTCCATTATT+GGG | 0.419661 | 4.1:-6174388 | MS.gene72151:CDS |
| AGAAGATAAGTGCTGACGTT+TGG | 0.421319 | 4.1:+6175878 | None:intergenic |
| GAATTCACGCGGTGTTAGAT+TGG | 0.424651 | 4.1:-6174934 | MS.gene72151:CDS |
| TCTAGTGGTAGACCCAATAA+TGG | 0.430522 | 4.1:+6174376 | None:intergenic |
| GCTCTCCTGGAAACGTCAGC+TGG | 0.434410 | 4.1:+6174959 | None:intergenic |
| TAAGAATCGCACGAGATGGC+TGG | 0.434704 | 4.1:+6176041 | None:intergenic |
| GACGTTTGGAAAGTTCGATA+TGG | 0.436029 | 4.1:+6175892 | None:intergenic |
| AAAGTGCCTGCTATTGTTGA+TGG | 0.442576 | 4.1:-6175744 | MS.gene72151:CDS |
| GCCTCAATTTGAGCTTATAG+AGG | 0.464521 | 4.1:+6173922 | None:intergenic |
| AAGCCAAATGTTCTCTATTG+TGG | 0.481096 | 4.1:+6174306 | None:intergenic |
| TTCCTGGAGTTGCACACCAT+TGG | 0.483640 | 4.1:-6175311 | MS.gene72151:intron |
| TAGCAGGCACTTTCTTGAAA+GGG | 0.498202 | 4.1:+6175754 | None:intergenic |
| ATAGCAGGCACTTTCTTGAA+AGG | 0.499112 | 4.1:+6175753 | None:intergenic |
| ACTGCTGAACTTTCTTGTGC+GGG | 0.510595 | 4.1:+6174000 | None:intergenic |
| CACTGCTGAACTTTCTTGTG+CGG | 0.511688 | 4.1:+6173999 | None:intergenic |
| AACATTTGGCTTAAGGGTGA+CGG | 0.516834 | 4.1:-6174295 | MS.gene72151:CDS |
| TTCCATAGCGGATCTCAGCC+TGG | 0.518231 | 4.1:-6174245 | MS.gene72151:CDS |
| CACGAGATGGCTGGGACATA+CGG | 0.524178 | 4.1:+6176050 | None:intergenic |
| GACGGGCAATACTTGCTTGG+TGG | 0.525091 | 4.1:-6174277 | MS.gene72151:CDS |
| TACCAATGGTGTGCAACTCC+AGG | 0.526131 | 4.1:+6175309 | None:intergenic |
| AGCAATCTAGTCAGACAGAT+GGG | 0.528693 | 4.1:-6173890 | MS.gene72151:CDS |
| ACATTTGGCTTAAGGGTGAC+GGG | 0.529892 | 4.1:-6174294 | MS.gene72151:CDS |
| CTCTCCTGGAAACGTCAGCT+GGG | 0.534776 | 4.1:+6174960 | None:intergenic |
| ATTGCATAATTTCGCAGACC+AGG | 0.535370 | 4.1:+6174227 | None:intergenic |
| AACCTTCCATCAACAATAGC+AGG | 0.537384 | 4.1:+6175738 | None:intergenic |
| AAGAATCGCACGAGATGGCT+GGG | 0.538190 | 4.1:+6176042 | None:intergenic |
| CAGATGGGGAAATGAAATCT+GGG | 0.545472 | 4.1:-6173875 | MS.gene72151:CDS |
| GCAGCTGCTTGCTTGTCTAG+TGG | 0.546186 | 4.1:+6174361 | None:intergenic |
| TTATGAACTTCATGAAAATG+TGG | 0.556304 | 4.1:+6173948 | None:intergenic |
| TCACATTCTCGAAGTTATAG+GGG | 0.557900 | 4.1:+6173845 | None:intergenic |
| TCTAAATTCCATAGAGTCAA+CGG | 0.561391 | 4.1:-6175933 | MS.gene72151:intron |
| GACCAGGCTGAGATCCGCTA+TGG | 0.574973 | 4.1:+6174243 | None:intergenic |
| GGTGACGGGCAATACTTGCT+TGG | 0.582776 | 4.1:-6174280 | MS.gene72151:CDS |
| AAGCAATCTAGTCAGACAGA+TGG | 0.589247 | 4.1:-6173891 | MS.gene72151:CDS |
| TCCTCTATAAGCTCAAATTG+AGG | 0.590846 | 4.1:-6173923 | MS.gene72151:CDS |
| AAAATAAGAATCGCACGAGA+TGG | 0.596267 | 4.1:+6176037 | None:intergenic |
| CGCACAAGAAAGTTCAGCAG+TGG | 0.597331 | 4.1:-6173998 | MS.gene72151:CDS |
| AGGCTGAGATCCGCTATGGA+AGG | 0.607591 | 4.1:+6174247 | None:intergenic |
| GGAATAACGCACCTGCTCCA+CGG | 0.611210 | 4.1:+6174894 | None:intergenic |
| TGAGATCCGCTATGGAAGGT+CGG | 0.628543 | 4.1:+6174251 | None:intergenic |
| TACAGTATTTAGAACAAACC+CGG | 0.632448 | 4.1:+6174405 | None:intergenic |
| TGCCTGCTATTGTTGATGGA+AGG | 0.637587 | 4.1:-6175740 | MS.gene72151:CDS |
| CATCACCTGAATTTGCGCCG+TGG | 0.644810 | 4.1:-6174911 | MS.gene72151:CDS |
| CAGGAGAGCTAGAATTCACG+CGG | 0.651093 | 4.1:-6174945 | MS.gene72151:CDS |
| GCAATCTAGTCAGACAGATG+GGG | 0.657067 | 4.1:-6173889 | MS.gene72151:CDS |
| GATGAAGCTGAAAGTGTATG+CGG | 0.683286 | 4.1:-6176074 | MS.gene72151:CDS |
| TGGCTTCCGACCTTCCATAG+CGG | 0.702512 | 4.1:-6174257 | MS.gene72151:CDS |
| GAAGGTTCAAGCTATTCGAG+AGG | 0.706131 | 4.1:-6175722 | MS.gene72151:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAAAAGTTTTAAAAAT+AGG | + | chr4.1:6174920-6174939 | None:intergenic | 10.0% |
| !! | ATTGAAATTAAGAAAATAGA+AGG | + | chr4.1:6173930-6173949 | None:intergenic | 15.0% |
| !!! | ATAAAAAAGATTTTGAAAGA+GGG | + | chr4.1:6174643-6174662 | None:intergenic | 15.0% |
| !!! | TACATGTATTTTTATTTTCA+TGG | - | chr4.1:6174091-6174110 | MS.gene72151:intron | 15.0% |
| !! | ACAATACAATATTTAGCTAA+TGG | + | chr4.1:6174731-6174750 | None:intergenic | 20.0% |
| !! | ATATTTCACCTAATATAGTT+TGG | - | chr4.1:6174468-6174487 | MS.gene72151:intron | 20.0% |
| !! | GAAAGAAAAATAAACAAAGA+GGG | + | chr4.1:6175060-6175079 | None:intergenic | 20.0% |
| !! | TGAAAGAAAAATAAACAAAG+AGG | + | chr4.1:6175061-6175080 | None:intergenic | 20.0% |
| !!! | ATTAGTAGTTTTATGAGAAT+GGG | - | chr4.1:6175404-6175423 | MS.gene72151:intron | 20.0% |
| !!! | CATAAAAAAGATTTTGAAAG+AGG | + | chr4.1:6174644-6174663 | None:intergenic | 20.0% |
| !!! | CATTTTCAATTGTATGAAAA+TGG | + | chr4.1:6174235-6174254 | None:intergenic | 20.0% |
| !!! | GATGAAAAGTTTTATGTTTT+AGG | + | chr4.1:6175744-6175763 | None:intergenic | 20.0% |
| !!! | TATTCTAAGGAACTTATATT+GGG | - | chr4.1:6174384-6174403 | MS.gene72151:CDS | 20.0% |
| ! | AATATAACAAAGACGTGAAT+AGG | + | chr4.1:6174544-6174563 | None:intergenic | 25.0% |
| ! | ATAAGTTAACCTAAAATCCA+TGG | + | chr4.1:6175335-6175354 | None:intergenic | 25.0% |
| ! | ATCAAGTTAGCTAAAAATCA+TGG | - | chr4.1:6175187-6175206 | MS.gene72151:intron | 25.0% |
| ! | ATTATAAGCGCACTTAATTA+TGG | + | chr4.1:6174363-6174382 | None:intergenic | 25.0% |
| ! | GAATAAAATTTGCACACAAA+AGG | + | chr4.1:6175450-6175469 | None:intergenic | 25.0% |
| ! | TTATAAGCGCACTTAATTAT+GGG | + | chr4.1:6174362-6174381 | None:intergenic | 25.0% |
| ! | TTATGAACTTCATGAAAATG+TGG | + | chr4.1:6175973-6175992 | None:intergenic | 25.0% |
| !! | CTATTCTAAGGAACTTATAT+TGG | - | chr4.1:6174383-6174402 | MS.gene72151:CDS | 25.0% |
| !! | TTGTGATAATGACATTTCTT+TGG | - | chr4.1:6175854-6175873 | MS.gene72151:intron | 25.0% |
| !!! | GATTAGTAGTTTTATGAGAA+TGG | - | chr4.1:6175403-6175422 | MS.gene72151:intron | 25.0% |
| !!! | TGTATTGTTTTGTATCAATC+TGG | - | chr4.1:6175304-6175323 | MS.gene72151:intron | 25.0% |
| !!! | TTTGTTTCATTGATTCCATT+AGG | - | chr4.1:6174933-6174952 | MS.gene72151:CDS | 25.0% |
| AATGATTATGATCGTCTTCT+TGG | - | chr4.1:6175895-6175914 | MS.gene72151:CDS | 30.0% | |
| GTTAATCGCTGAAATGAAAA+TGG | + | chr4.1:6174145-6174164 | None:intergenic | 30.0% | |
| TCTAAATTCCATAGAGTCAA+CGG | - | chr4.1:6173985-6174004 | MS.gene72151:CDS | 30.0% | |
| TGCGCTTATAATCTATTCTA+AGG | - | chr4.1:6174371-6174390 | MS.gene72151:CDS | 30.0% | |
| ! | AATAGAGAACATTTGGCTTA+AGG | - | chr4.1:6175616-6175635 | MS.gene72151:intron | 30.0% |
| ! | ATAGAGAACATTTGGCTTAA+GGG | - | chr4.1:6175617-6175636 | MS.gene72151:intron | 30.0% |
| ! | TACAGTATTTAGAACAAACC+CGG | + | chr4.1:6175516-6175535 | None:intergenic | 30.0% |
| ! | TTGAAGCACCAAACTATATT+AGG | + | chr4.1:6174479-6174498 | None:intergenic | 30.0% |
| AAAAAATCCTCAACGAGTCA+TGG | + | chr4.1:6175770-6175789 | None:intergenic | 35.0% | |
| AAAACAAGTAGACTAGGTCA+TGG | + | chr4.1:6175485-6175504 | None:intergenic | 35.0% | |
| AAAATAAGAATCGCACGAGA+TGG | + | chr4.1:6173884-6173903 | None:intergenic | 35.0% | |
| AAGCCAAATGTTCTCTATTG+TGG | + | chr4.1:6175615-6175634 | None:intergenic | 35.0% | |
| ACAAAGGTTAAACTTACACG+AGG | + | chr4.1:6174813-6174832 | None:intergenic | 35.0% | |
| ACTGTACTAGCTCCATTATT+GGG | - | chr4.1:6175530-6175549 | MS.gene72151:intron | 35.0% | |
| AGAGCAAAAACAAGTAGACT+AGG | + | chr4.1:6175491-6175510 | None:intergenic | 35.0% | |
| AGAGGGAAAATACTTACCAA+TGG | + | chr4.1:6174626-6174645 | None:intergenic | 35.0% | |
| ATCAGAAAATTCCACTAACG+AGG | + | chr4.1:6174769-6174788 | None:intergenic | 35.0% | |
| CACTTATCTTCTGAGTTTCA+AGG | - | chr4.1:6174051-6174070 | MS.gene72151:intron | 35.0% | |
| CTGCGAAATTATGCAATTAC+AGG | - | chr4.1:6175697-6175716 | MS.gene72151:intron | 35.0% | |
| GTAATGACTAGCATACACAA+AGG | + | chr4.1:6174829-6174848 | None:intergenic | 35.0% | |
| TACTGTACTAGCTCCATTAT+TGG | - | chr4.1:6175529-6175548 | MS.gene72151:intron | 35.0% | |
| TCACATTCTCGAAGTTATAG+GGG | + | chr4.1:6176076-6176095 | None:intergenic | 35.0% | |
| TCAGAAAATTCCACTAACGA+GGG | + | chr4.1:6174768-6174787 | None:intergenic | 35.0% | |
| TCCTCTATAAGCTCAAATTG+AGG | - | chr4.1:6175995-6176014 | MS.gene72151:intron | 35.0% | |
| TGTCCACAATAGAGAACATT+TGG | - | chr4.1:6175609-6175628 | MS.gene72151:intron | 35.0% | |
| TTGTATGACTGCACTGAATA+AGG | + | chr4.1:6174888-6174907 | None:intergenic | 35.0% | |
| ! | TTTTTCTGCTGCGACTTTTT+TGG | + | chr4.1:6174278-6174297 | None:intergenic | 35.0% |
| AACCTTCCATCAACAATAGC+AGG | + | chr4.1:6174183-6174202 | None:intergenic | 40.0% | |
| AAGCAATCTAGTCAGACAGA+TGG | - | chr4.1:6176027-6176046 | MS.gene72151:intron | 40.0% | |
| AAGCTATCCAGTTCAGAAAC+AGG | + | chr4.1:6175141-6175160 | None:intergenic | 40.0% | |
| ACAGATGGGGAAATGAAATC+TGG | - | chr4.1:6176042-6176061 | MS.gene72151:CDS | 40.0% | |
| AGCAATCTAGTCAGACAGAT+GGG | - | chr4.1:6176028-6176047 | MS.gene72151:intron | 40.0% | |
| AGCAGATGACTGCATAAAGT+TGG | - | chr4.1:6175243-6175262 | MS.gene72151:intron | 40.0% | |
| ATAGCAGGCACTTTCTTGAA+AGG | + | chr4.1:6174168-6174187 | None:intergenic | 40.0% | |
| ATTGCATAATTTCGCAGACC+AGG | + | chr4.1:6175694-6175713 | None:intergenic | 40.0% | |
| CAAGATATCTGAATGCGTAG+AGG | - | chr4.1:6174668-6174687 | MS.gene72151:intron | 40.0% | |
| CAGATGGGGAAATGAAATCT+GGG | - | chr4.1:6176043-6176062 | MS.gene72151:CDS | 40.0% | |
| GACGTTTGGAAAGTTCGATA+TGG | + | chr4.1:6174029-6174048 | None:intergenic | 40.0% | |
| GCCTCAATTTGAGCTTATAG+AGG | + | chr4.1:6175999-6176018 | None:intergenic | 40.0% | |
| TAGCAGGCACTTTCTTGAAA+GGG | + | chr4.1:6174167-6174186 | None:intergenic | 40.0% | |
| TAGCTAGAAATGTGACATGC+AGG | - | chr4.1:6175812-6175831 | MS.gene72151:intron | 40.0% | |
| TATCTTGCTTCTGCATTTCC+TGG | - | chr4.1:6174591-6174610 | MS.gene72151:intron | 40.0% | |
| TATGCAATTACAGGTAGACG+TGG | - | chr4.1:6175706-6175725 | MS.gene72151:intron | 40.0% | |
| TCTAGTGGTAGACCCAATAA+TGG | + | chr4.1:6175545-6175564 | None:intergenic | 40.0% | |
| TGAATGCGTAGAGGTTAAGA+GGG | - | chr4.1:6174677-6174696 | MS.gene72151:intron | 40.0% | |
| TGCTAGTCATTACATACTGC+AGG | - | chr4.1:6174836-6174855 | MS.gene72151:intron | 40.0% | |
| ! | AAAGTGCCTGCTATTGTTGA+TGG | - | chr4.1:6174174-6174193 | MS.gene72151:intron | 40.0% |
| ! | AACATTTGGCTTAAGGGTGA+CGG | - | chr4.1:6175623-6175642 | MS.gene72151:intron | 40.0% |
| ! | GTATCAATCTGGTAATGCCA+TGG | - | chr4.1:6175315-6175334 | MS.gene72151:CDS | 40.0% |
| !! | AACAAAGAGGGTTGTTTTCG+TGG | + | chr4.1:6175048-6175067 | None:intergenic | 40.0% |
| !! | AATCGATTCCGTTGACTCTA+TGG | + | chr4.1:6173996-6174015 | None:intergenic | 40.0% |
| !! | AGAAGATAAGTGCTGACGTT+TGG | + | chr4.1:6174043-6174062 | None:intergenic | 40.0% |
| !! | CTGGTAATGCCATGGATTTT+AGG | - | chr4.1:6175323-6175342 | MS.gene72151:CDS | 40.0% |
| !!! | CTACTTGTTTTTGCTCTAGC+CGG | - | chr4.1:6175494-6175513 | MS.gene72151:intron | 40.0% |
| !!! | TACTTGTTTTTGCTCTAGCC+GGG | - | chr4.1:6175495-6175514 | MS.gene72151:intron | 40.0% |
| ACTGCTGAACTTTCTTGTGC+GGG | + | chr4.1:6175921-6175940 | None:intergenic | 45.0% | |
| AGAATGGGTGAGTGAAGACA+CGG | - | chr4.1:6175419-6175438 | MS.gene72151:intron | 45.0% | |
| CACTGCTGAACTTTCTTGTG+CGG | + | chr4.1:6175922-6175941 | None:intergenic | 45.0% | |
| CTGAATGCGTAGAGGTTAAG+AGG | - | chr4.1:6174676-6174695 | MS.gene72151:intron | 45.0% | |
| GAAGGTTCAAGCTATTCGAG+AGG | - | chr4.1:6174196-6174215 | MS.gene72151:intron | 45.0% | |
| GCAATCTAGTCAGACAGATG+GGG | - | chr4.1:6176029-6176048 | MS.gene72151:intron | 45.0% | |
| GTAGACTAGGTCATGGAAAG+AGG | + | chr4.1:6175478-6175497 | None:intergenic | 45.0% | |
| ! | ACATTTGGCTTAAGGGTGAC+GGG | - | chr4.1:6175624-6175643 | MS.gene72151:intron | 45.0% |
| ! | CGTAGAGGTTAAGAGGGTAT+TGG | - | chr4.1:6174683-6174702 | MS.gene72151:intron | 45.0% |
| ! | GAATTCACGCGGTGTTAGAT+TGG | - | chr4.1:6174984-6175003 | MS.gene72151:intron | 45.0% |
| ! | TGCCTGCTATTGTTGATGGA+AGG | - | chr4.1:6174178-6174197 | MS.gene72151:intron | 45.0% |
| !! | TGTCTTGCCTGTTTCTGAAC+TGG | - | chr4.1:6175131-6175150 | MS.gene72151:intron | 45.0% |
| !!! | TTTTATAATAATGATTTTAA+CGG | + | chr4.1:6174324-6174343 | None:intergenic | 5.0% |
| AACGTCAGCTGGGTACCTAA+TGG | + | chr4.1:6174951-6174970 | None:intergenic | 50.0% | |
| AAGAATCGCACGAGATGGCT+GGG | + | chr4.1:6173879-6173898 | None:intergenic | 50.0% | |
| ATTACAGGTAGACGTGGCAC+TGG | - | chr4.1:6175712-6175731 | MS.gene72151:intron | 50.0% | |
| CAAAAACGCACCCTCGTTAG+TGG | - | chr4.1:6174755-6174774 | MS.gene72151:intron | 50.0% | |
| CAGGAGAGCTAGAATTCACG+CGG | - | chr4.1:6174973-6174992 | MS.gene72151:intron | 50.0% | |
| CATCATGCCATGACTCGTTG+AGG | - | chr4.1:6175760-6175779 | MS.gene72151:CDS | 50.0% | |
| CGCACAAGAAAGTTCAGCAG+TGG | - | chr4.1:6175920-6175939 | MS.gene72151:CDS | 50.0% | |
| TAAGAATCGCACGAGATGGC+TGG | + | chr4.1:6173880-6173899 | None:intergenic | 50.0% | |
| TACCAATGGTGTGCAACTCC+AGG | + | chr4.1:6174612-6174631 | None:intergenic | 50.0% | |
| TGAGATCCGCTATGGAAGGT+CGG | + | chr4.1:6175670-6175689 | None:intergenic | 50.0% | |
| TTACAGGTAGACGTGGCACT+GGG | - | chr4.1:6175713-6175732 | MS.gene72151:intron | 50.0% | |
| TTCCTGGAGTTGCACACCAT+TGG | - | chr4.1:6174607-6174626 | MS.gene72151:intron | 50.0% | |
| AGGCTGAGATCCGCTATGGA+AGG | + | chr4.1:6175674-6175693 | None:intergenic | 55.0% | |
| CACGAGATGGCTGGGACATA+CGG | + | chr4.1:6173871-6173890 | None:intergenic | 55.0% | |
| CATCACCTGAATTTGCGCCG+TGG | - | chr4.1:6175007-6175026 | MS.gene72151:intron | 55.0% | |
| CTCTCCTGGAAACGTCAGCT+GGG | + | chr4.1:6174961-6174980 | None:intergenic | 55.0% | |
| GACGGGCAATACTTGCTTGG+TGG | - | chr4.1:6175641-6175660 | MS.gene72151:intron | 55.0% | |
| GCAGCTGCTTGCTTGTCTAG+TGG | + | chr4.1:6175560-6175579 | None:intergenic | 55.0% | |
| GGAATAACGCACCTGCTCCA+CGG | + | chr4.1:6175027-6175046 | None:intergenic | 55.0% | |
| TACAGGTAGACGTGGCACTG+GGG | - | chr4.1:6175714-6175733 | MS.gene72151:intron | 55.0% | |
| TGGCTTCCGACCTTCCATAG+CGG | - | chr4.1:6175661-6175680 | MS.gene72151:intron | 55.0% | |
| !! | CGCGTGAATTCTAGCTCTCC+TGG | + | chr4.1:6174975-6174994 | None:intergenic | 55.0% |
| !! | GGTGACGGGCAATACTTGCT+TGG | - | chr4.1:6175638-6175657 | MS.gene72151:intron | 55.0% |
| !! | TTCCATAGCGGATCTCAGCC+TGG | - | chr4.1:6175673-6175692 | MS.gene72151:intron | 55.0% |
| CTGAATTTGCGCCGTGGAGC+AGG | - | chr4.1:6175013-6175032 | MS.gene72151:intron | 60.0% | |
| CTGCTCCACGGCGCAAATTC+AGG | + | chr4.1:6175015-6175034 | None:intergenic | 60.0% | |
| GACCAGGCTGAGATCCGCTA+TGG | + | chr4.1:6175678-6175697 | None:intergenic | 60.0% | |
| GCTCTCCTGGAAACGTCAGC+TGG | + | chr4.1:6174962-6174981 | None:intergenic | 60.0% | |
| GGTACCCAGCTGACGTTTCC+AGG | - | chr4.1:6174954-6174973 | MS.gene72151:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 6173845 | 6176095 | 6173845 | ID=MS.gene72151 |
| chr4.1 | mRNA | 6173845 | 6176095 | 6173845 | ID=MS.gene72151.t1;Parent=MS.gene72151 |
| chr4.1 | exon | 6176031 | 6176095 | 6176031 | ID=MS.gene72151.t1.exon1;Parent=MS.gene72151.t1 |
| chr4.1 | CDS | 6176031 | 6176095 | 6176031 | ID=cds.MS.gene72151.t1;Parent=MS.gene72151.t1 |
| chr4.1 | exon | 6175868 | 6175941 | 6175868 | ID=MS.gene72151.t1.exon2;Parent=MS.gene72151.t1 |
| chr4.1 | CDS | 6175868 | 6175941 | 6175868 | ID=cds.MS.gene72151.t1;Parent=MS.gene72151.t1 |
| chr4.1 | exon | 6175723 | 6175783 | 6175723 | ID=MS.gene72151.t1.exon3;Parent=MS.gene72151.t1 |
| chr4.1 | CDS | 6175723 | 6175783 | 6175723 | ID=cds.MS.gene72151.t1;Parent=MS.gene72151.t1 |
| chr4.1 | exon | 6175312 | 6175365 | 6175312 | ID=MS.gene72151.t1.exon4;Parent=MS.gene72151.t1 |
| chr4.1 | CDS | 6175312 | 6175365 | 6175312 | ID=cds.MS.gene72151.t1;Parent=MS.gene72151.t1 |
| chr4.1 | exon | 6174906 | 6174985 | 6174906 | ID=MS.gene72151.t1.exon5;Parent=MS.gene72151.t1 |
| chr4.1 | CDS | 6174906 | 6174985 | 6174906 | ID=cds.MS.gene72151.t1;Parent=MS.gene72151.t1 |
| chr4.1 | exon | 6174222 | 6174427 | 6174222 | ID=MS.gene72151.t1.exon6;Parent=MS.gene72151.t1 |
| chr4.1 | CDS | 6174222 | 6174427 | 6174222 | ID=cds.MS.gene72151.t1;Parent=MS.gene72151.t1 |
| chr4.1 | exon | 6173845 | 6174057 | 6173845 | ID=MS.gene72151.t1.exon7;Parent=MS.gene72151.t1 |
| chr4.1 | CDS | 6173845 | 6174057 | 6173845 | ID=cds.MS.gene72151.t1;Parent=MS.gene72151.t1 |
| Gene Sequence |
| Protein sequence |
