AlfalfaGEDB | MS.gene74837

M. sativa cultivar XinJiangDaYe / MS.gene74837

KEGG: K02900
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0015934 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00828.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74837.t1	XP_003613127.2	100	147	0	0	1	147	1	147	9.30E-52	213

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74837.t1	P49637	77.6	147	32	1	1	147	1	146	6.1e-44	178.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74837.t1	G7JYX5	100.0	147	0	0	1	147	1	147	6.7e-52	213.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050134	MS.gene74837	0.803069	4.16E-49	-1.69E-46
MS.gene051904	MS.gene74837	0.80107	1.07E-48	-1.69E-46
MS.gene052664	MS.gene74837	0.842015	3.35E-58	-1.69E-46
MS.gene053224	MS.gene74837	0.808175	3.52E-50	-1.69E-46
MS.gene057272	MS.gene74837	0.809172	2.16E-50	-1.69E-46
MS.gene057641	MS.gene74837	0.831561	1.56E-55	-1.69E-46
MS.gene057643	MS.gene74837	0.849308	3.51E-60	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene26005	MS.gene74837	PPI
MS.gene29174	MS.gene74837	PPI
MS.gene74837	MS.gene86214	PPI
MS.gene74837	MS.gene29174	PPI
MS.gene022341	MS.gene74837	PPI
MS.gene86214	MS.gene74837	PPI
MS.gene70668	MS.gene74837	PPI
MS.gene027718	MS.gene74837	PPI
MS.gene44297	MS.gene74837	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74837.t1	MTR_5g033090	100.000	147	0	0	1	147	1	147	2.98e-104	294
MS.gene74837.t1	MTR_3g077050	99.320	147	1	0	1	147	1	147	7.09e-104	293
MS.gene74837.t1	MTR_8g069460	84.459	148	22	1	1	147	1	148	8.14e-88	253
MS.gene74837.t1	MTR_4g119380	53.741	147	14	3	1	147	100	192	3.35e-36	124

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74837.t1	AT1G70600	85.714	147	20	1	1	147	1	146	9.47e-89	255
MS.gene74837.t1	AT1G23290	83.673	147	23	1	1	147	1	146	3.32e-86	248
MS.gene74837.t1	AT1G12960	50.000	146	27	2	1	146	1	100	1.75e-36	121

Find 0 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TGATTGATGTTACTCAGTTT+GGG	-	23879:208323-208342	MS.gene74837:CDS	30.0%
	TTCTTTAAGCTTCTTGGAAA+AGG	-	23879:208346-208365	MS.gene74837:CDS	30.0%
!!	AGCTTAGTCTTAACAACAAA+AGG	+	23879:208391-208410	None:intergenic	30.0%
	AACTGAGTAACATCAATCAC+AGG	+	23879:208322-208341	None:intergenic	35.0%
	AAGTATCATCCAGGTTACTT+CGG	-	23879:208169-208188	MS.gene74837:CDS	35.0%
	ATCTTGTCGATGTTGACAAT+AGG	+	23879:208244-208263	None:intergenic	35.0%
	GTGATTGATGTTACTCAGTT+TGG	-	23879:208322-208341	MS.gene74837:CDS	35.0%
	TCTTGTCGATGTTGACAATA+GGG	+	23879:208243-208262	None:intergenic	35.0%
!	TTTGGGTTCTTTAAGCTTCT+TGG	-	23879:208340-208359	MS.gene74837:CDS	35.0%
	AAGAAGAACAGGAAGAAGAG+AGG	-	23879:208046-208065	MS.gene74837:CDS	40.0%
	GATACTTGTCGAAGAGGATA+CGG	+	23879:208156-208175	None:intergenic	40.0%
	GATTGCTGAGAAGAAGATCA+AGG	-	23879:208420-208439	MS.gene74837:CDS	40.0%
	TCTCATTCCACAAGATGTGA+AGG	-	23879:208270-208289	MS.gene74837:CDS	40.0%
	TCTTCCTGTTCTTCTTGAAG+CGG	+	23879:208042-208061	None:intergenic	40.0%
!	ACAACAAAAGGCTGATTCTG+AGG	+	23879:208379-208398	None:intergenic	40.0%
!	TGTGAAGGAGAAAGCTTTGA+AGG	-	23879:208285-208304	MS.gene74837:CDS	40.0%
	AAGAAGATCAAGGAAGCTGG+TGG	-	23879:208430-208449	MS.gene74837:CDS	45.0%
	CTCTTCGACAAGTATCATCC+AGG	-	23879:208160-208179	MS.gene74837:CDS	45.0%
	CTGGATGATACTTGTCGAAG+AGG	+	23879:208162-208181	None:intergenic	45.0%
	CTTCCTGTTCTTCTTGAAGC+GGG	+	23879:208041-208060	None:intergenic	45.0%
	GAGAAGAAGATCAAGGAAGC+TGG	-	23879:208427-208446	MS.gene74837:CDS	45.0%
	GCTTTCTCCTTCACATCTTG+TGG	+	23879:208280-208299	None:intergenic	45.0%
	TCATCCAGGTTACTTCGGTA+AGG	-	23879:208174-208193	MS.gene74837:CDS	45.0%
	CCAACCTTACCGAAGTAACC+TGG	+	23879:208181-208200	None:intergenic	50.0%
	CCAGGTTACTTCGGTAAGGT+TGG	-	23879:208178-208197	MS.gene74837:CDS	50.0%
	CTTTCCGATACGACCATGAC+CGG	+	23879:208083-208102	None:intergenic	50.0%
	TGTCGAAGAGGATACGGTGA+TGG	+	23879:208150-208169	None:intergenic	50.0%
	CGACCCGCTTCAAGAAGAAC+AGG	-	23879:208035-208054	MS.gene74837:CDS	55.0%
!	ACGGTGATGGTGCATTCCTC+CGG	+	23879:208137-208156	None:intergenic	55.0%
!!	GGAAAGCATCGCAAGCATCC+CGG	-	23879:208097-208116	MS.gene74837:CDS	55.0%
	AAGAGAGGTCACGTGAGCGC+CGG	-	23879:208061-208080	MS.gene74837:CDS	60.0%
!	AAGCATCGCAAGCATCCCGG+AGG	-	23879:208100-208119	MS.gene74837:CDS	60.0%
!!	AGCGCCGGTCATGGTCGTAT+CGG	-	23879:208076-208095	MS.gene74837:CDS	60.0%
	TCCGGCGTTACCACGACCTC+CGG	+	23879:208119-208138	None:intergenic	65.0%
	CCGGCGTTACCACGACCTCC+GGG	+	23879:208118-208137	None:intergenic	70.0%
	CGCAAGCATCCCGGAGGTCG+TGG	-	23879:208106-208125	MS.gene74837:CDS	70.0%
!	CCCGGAGGTCGTGGTAACGC+CGG	-	23879:208115-208134	MS.gene74837:CDS	70.0%
!	GGAGGTCGTGGTAACGCCGG+AGG	-	23879:208118-208137	MS.gene74837:CDS	70.0%
!!	GGTCACGTGAGCGCCGGTCA+TGG	-	23879:208067-208086	MS.gene74837:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
23879	gene	208031	208474	208031	ID=MS.gene74837
23879	mRNA	208031	208474	208031	ID=MS.gene74837.t1;Parent=MS.gene74837
23879	exon	208031	208474	208031	ID=MS.gene74837.t1.exon1;Parent=MS.gene74837.t1
23879	CDS	208031	208474	208031	ID=cds.MS.gene74837.t1;Parent=MS.gene74837.t1

Gene Sequence

>MS.gene74837

ATGACGACCCGCTTCAAGAAGAACAGGAAGAAGAGAGGTCACGTGAGCGCCGGTCATGGTCGTATCGGAAAGCATCGCAAGCATCCCGGAGGTCGTGGTAACGCCGGAGGAATGCACCATCACCGTATCCTCTTCGACAAGTATCATCCAGGTTACTTCGGTAAGGTTGGTATGCGTTACTTTCACAAGCTTCGTAACAAATTCTATAACCCTATTGTCAACATCGACAAGATCGCTTCTCTCATTCCACAAGATGTGAAGGAGAAAGCTTTGAAGGAGAATAAAGCTCCTGTGATTGATGTTACTCAGTTTGGGTTCTTTAAGCTTCTTGGAAAAGGTGTTTTGCCTCAGAATCAGCCTTTTGTTGTTAAGACTAAGCTGATTTCGAAGATTGCTGAGAAGAAGATCAAGGAAGCTGGTGGTGCTGTTGTTCTTACTGCTTGA

Protein sequence

>MS.gene74837.t1

MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYNPIVNIDKIASLIPQDVKEKALKENKAPVIDVTQFGFFKLLGKGVLPQNQPFVVKTKLISKIAEKKIKEAGGAVVLTA