Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75147.t1 | XP_013470433.1 | 97.3 | 264 | 7 | 0 | 1 | 264 | 1 | 264 | 9.60E-140 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75147.t1 | Q5QMM3 | 53.8 | 277 | 98 | 8 | 5 | 262 | 1 | 266 | 2.1e-66 | 253.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75147.t1 | A0A072VS22 | 97.3 | 264 | 7 | 0 | 1 | 264 | 1 | 264 | 6.9e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene75147.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene75147 | 0.807609 | 4.65E-50 | -1.69E-46 |
| MS.gene050303 | MS.gene75147 | 0.800716 | 1.26E-48 | -1.69E-46 |
| MS.gene050780 | MS.gene75147 | 0.809336 | 1.99E-50 | -1.69E-46 |
| MS.gene051832 | MS.gene75147 | 0.804401 | 2.20E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene75147 | 0.82814 | 1.06E-54 | -1.69E-46 |
| MS.gene052302 | MS.gene75147 | 0.833072 | 6.58E-56 | -1.69E-46 |
| MS.gene052358 | MS.gene75147 | -0.820956 | 5.22E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene75147 | 0.834814 | 2.41E-56 | -1.69E-46 |
| MS.gene053006 | MS.gene75147 | 0.800081 | 1.70E-48 | -1.69E-46 |
| MS.gene053188 | MS.gene75147 | 0.817561 | 3.09E-52 | -1.69E-46 |
| MS.gene053216 | MS.gene75147 | 0.814599 | 1.42E-51 | -1.69E-46 |
| MS.gene053294 | MS.gene75147 | 0.829389 | 5.29E-55 | -1.69E-46 |
| MS.gene053963 | MS.gene75147 | 0.814637 | 1.39E-51 | -1.69E-46 |
| MS.gene054537 | MS.gene75147 | 0.810019 | 1.42E-50 | -1.69E-46 |
| MS.gene05548 | MS.gene75147 | 0.82353 | 1.32E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene75147 | 0.807951 | 3.93E-50 | -1.69E-46 |
| MS.gene056091 | MS.gene75147 | 0.821366 | 4.19E-53 | -1.69E-46 |
| MS.gene057060 | MS.gene75147 | 0.816728 | 4.76E-52 | -1.69E-46 |
| MS.gene057079 | MS.gene75147 | 0.833932 | 4.01E-56 | -1.69E-46 |
| MS.gene057555 | MS.gene75147 | 0.806684 | 7.30E-50 | -1.69E-46 |
| MS.gene05795 | MS.gene75147 | 0.852859 | 3.50E-61 | -1.69E-46 |
| MS.gene058635 | MS.gene75147 | 0.860536 | 1.93E-63 | -1.69E-46 |
| MS.gene059317 | MS.gene75147 | 0.807007 | 6.24E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene75147 | 0.822117 | 2.81E-53 | -1.69E-46 |
| MS.gene060297 | MS.gene75147 | 0.807673 | 4.51E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene75147 | 0.809097 | 2.24E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene75147 | 0.80055 | 1.37E-48 | -1.69E-46 |
| MS.gene061040 | MS.gene75147 | -0.800294 | 1.54E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75147.t1 | MTR_1g115315 | 97.348 | 264 | 7 | 0 | 1 | 264 | 1 | 264 | 0.0 | 540 |
| MS.gene75147.t1 | MTR_1g115315 | 95.868 | 242 | 10 | 0 | 1 | 242 | 1 | 242 | 6.03e-176 | 485 |
| MS.gene75147.t1 | MTR_3g115620 | 69.375 | 160 | 44 | 4 | 14 | 168 | 8 | 167 | 2.25e-73 | 223 |
| MS.gene75147.t1 | MTR_7g023810 | 60.753 | 186 | 51 | 5 | 5 | 189 | 1 | 165 | 1.13e-66 | 205 |
| MS.gene75147.t1 | MTR_4g084550 | 36.607 | 112 | 51 | 2 | 69 | 169 | 37 | 139 | 8.68e-18 | 79.3 |
| MS.gene75147.t1 | MTR_2g015000 | 44.615 | 65 | 36 | 0 | 83 | 147 | 53 | 117 | 1.82e-15 | 75.9 |
| MS.gene75147.t1 | MTR_7g025010 | 42.857 | 77 | 40 | 1 | 72 | 144 | 30 | 106 | 2.43e-14 | 72.8 |
| MS.gene75147.t1 | MTR_4g088080 | 41.667 | 72 | 38 | 1 | 71 | 142 | 30 | 97 | 3.99e-13 | 68.6 |
| MS.gene75147.t1 | MTR_8g107210 | 39.506 | 81 | 48 | 1 | 85 | 165 | 96 | 175 | 4.95e-13 | 68.6 |
| MS.gene75147.t1 | MTR_7g060630 | 46.774 | 62 | 33 | 0 | 85 | 146 | 8 | 69 | 1.05e-12 | 65.9 |
| MS.gene75147.t1 | MTR_4g088070 | 42.857 | 63 | 36 | 0 | 82 | 144 | 26 | 88 | 2.58e-12 | 66.6 |
| MS.gene75147.t1 | MTR_4g063735 | 46.667 | 60 | 32 | 0 | 85 | 144 | 25 | 84 | 8.85e-12 | 63.9 |
| MS.gene75147.t1 | MTR_5g081990 | 43.333 | 60 | 34 | 0 | 85 | 144 | 33 | 92 | 1.33e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75147.t1 | AT4G35550 | 53.383 | 266 | 73 | 6 | 20 | 264 | 33 | 268 | 1.32e-85 | 256 |
| MS.gene75147.t1 | AT1G20700 | 52.761 | 163 | 69 | 5 | 10 | 168 | 19 | 177 | 8.01e-53 | 171 |
| MS.gene75147.t1 | AT1G20700 | 52.761 | 163 | 69 | 5 | 10 | 168 | 19 | 177 | 8.39e-53 | 171 |
| MS.gene75147.t1 | AT1G20710 | 52.857 | 140 | 61 | 4 | 23 | 158 | 13 | 151 | 2.64e-34 | 123 |
| MS.gene75147.t1 | AT1G20700 | 63.415 | 82 | 30 | 0 | 75 | 156 | 23 | 104 | 4.47e-34 | 120 |
| MS.gene75147.t1 | AT2G33880 | 44.615 | 65 | 36 | 0 | 82 | 146 | 52 | 116 | 2.96e-15 | 75.1 |
| MS.gene75147.t1 | AT5G45980 | 44.615 | 65 | 36 | 0 | 82 | 146 | 52 | 116 | 3.06e-15 | 74.7 |
| MS.gene75147.t1 | AT2G33880 | 44.615 | 65 | 36 | 0 | 82 | 146 | 52 | 116 | 3.24e-15 | 75.1 |
| MS.gene75147.t1 | AT3G18010 | 46.667 | 60 | 32 | 0 | 85 | 144 | 76 | 135 | 2.63e-13 | 69.3 |
| MS.gene75147.t1 | AT3G11260 | 48.333 | 60 | 31 | 0 | 85 | 144 | 24 | 83 | 1.24e-12 | 65.1 |
| MS.gene75147.t1 | AT5G05770 | 37.662 | 77 | 48 | 0 | 85 | 161 | 29 | 105 | 1.58e-12 | 63.5 |
| MS.gene75147.t1 | AT2G28610 | 43.548 | 62 | 35 | 0 | 85 | 146 | 8 | 69 | 4.33e-12 | 64.7 |
| MS.gene75147.t1 | AT2G01500 | 45.455 | 55 | 30 | 0 | 85 | 139 | 61 | 115 | 4.46e-11 | 62.0 |
Find 50 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACATTCGTTTCAGAAATT+TGG | 0.112745 | 1.1:-80962530 | None:intergenic |
| TCGATCTAGCACGCCTATTT+TGG | 0.121950 | 1.1:-80962563 | None:intergenic |
| TTTATAATTGGTTCCAAAAT+AGG | 0.153266 | 1.1:+80962550 | MS.gene75147:CDS |
| CTGAAACGAATGTTTATAAT+TGG | 0.212926 | 1.1:+80962538 | MS.gene75147:CDS |
| CCTTTCATCAGGGGTTAGGC+TGG | 0.295215 | 1.1:+80962335 | MS.gene75147:intron |
| CGAATATACGCTCAAGAATC+TGG | 0.304326 | 1.1:-80962440 | None:intergenic |
| AATTGTAGTCCTCTGCTTGC+TGG | 0.362368 | 1.1:-80963435 | None:intergenic |
| CGTATATTCGATCAGGGAAA+TGG | 0.392284 | 1.1:+80962453 | MS.gene75147:CDS |
| GCAAGCAGAGGACTACAATT+TGG | 0.393799 | 1.1:+80963438 | MS.gene75147:CDS |
| TTTCATCAGGGGTTAGGCTG+GGG | 0.399266 | 1.1:+80962337 | MS.gene75147:intron |
| TCTTGAGCGTATATTCGATC+AGG | 0.413169 | 1.1:+80962446 | MS.gene75147:CDS |
| CTTTCATCAGGGGTTAGGCT+GGG | 0.414371 | 1.1:+80962336 | MS.gene75147:intron |
| TCAAGAATCTGGAGCTGAAC+CGG | 0.421307 | 1.1:-80962429 | None:intergenic |
| TGTAGGAGTCCACCTCTGTC+TGG | 0.437314 | 1.1:-80962406 | None:intergenic |
| AGACATGCCACTCAAATTGC+TGG | 0.442604 | 1.1:-80962820 | None:intergenic |
| TTTCAGAAATTTGGCCATGC+TGG | 0.447497 | 1.1:-80962521 | None:intergenic |
| GGTGATGACTGATGAACAAT+TGG | 0.449180 | 1.1:+80960855 | MS.gene75147:CDS |
| TCTCAACAAAATGCTGCTCT+AGG | 0.464326 | 1.1:+80962684 | MS.gene75147:CDS |
| TCTGCTCAACAAGATCTTGC+TGG | 0.471131 | 1.1:+80960949 | MS.gene75147:CDS |
| TGTTGAGAATGAAATTCCTC+TGG | 0.474708 | 1.1:-80962669 | None:intergenic |
| CTCAACAAGCTGTTCACAAA+TGG | 0.485586 | 1.1:-80960911 | None:intergenic |
| TCAGGGAATGACTATCTAGC+TGG | 0.485659 | 1.1:+80963379 | MS.gene75147:intron |
| ACAGAGGTGGACTCCTACAC+CGG | 0.495315 | 1.1:+80962410 | MS.gene75147:CDS |
| CTCAACAAAATGCTGCTCTA+GGG | 0.501777 | 1.1:+80962685 | MS.gene75147:CDS |
| TGTCGAAGCGATGTATGTTA+AGG | 0.503782 | 1.1:+80960834 | MS.gene75147:CDS |
| AGAAACAACAAGTACAGAAT+GGG | 0.518129 | 1.1:+80960809 | MS.gene75147:CDS |
| AGAGAAAATGGTGAACATGA+TGG | 0.521726 | 1.1:+80960780 | None:intergenic |
| GCAGAGGACTACAATTTGGC+AGG | 0.523975 | 1.1:+80963442 | MS.gene75147:CDS |
| TGCGACTCATTGATGACAGC+TGG | 0.529717 | 1.1:+80962369 | MS.gene75147:CDS |
| CAGAAACAACAAGTACAGAA+TGG | 0.532343 | 1.1:+80960808 | MS.gene75147:CDS |
| AACATATTCCGTGTTTCCAT+CGG | 0.539020 | 1.1:+80962779 | MS.gene75147:CDS |
| ACCGCCATCCGATGGAAACA+CGG | 0.553887 | 1.1:-80962787 | None:intergenic |
| AGAGACTGAGGTTGATTCCA+AGG | 0.556104 | 1.1:+80962632 | MS.gene75147:CDS |
| GATCTTATACCGCCATCCGA+TGG | 0.574800 | 1.1:-80962795 | None:intergenic |
| CTTGAGCGTATATTCGATCA+GGG | 0.579984 | 1.1:+80962447 | MS.gene75147:CDS |
| ATCTGGAGCTGAACCGGTGT+AGG | 0.590506 | 1.1:-80962423 | None:intergenic |
| TCCGTGTTTCCATCGGATGG+CGG | 0.595864 | 1.1:+80962786 | MS.gene75147:CDS |
| TATTCCGTGTTTCCATCGGA+TGG | 0.597599 | 1.1:+80962783 | MS.gene75147:CDS |
| GCTACTGAACTCAGCCAGCA+TGG | 0.597739 | 1.1:+80962507 | MS.gene75147:CDS |
| TCAACAAAATGCTGCTCTAG+GGG | 0.599937 | 1.1:+80962686 | MS.gene75147:CDS |
| AACTAGTAACACTGAATCAG+AGG | 0.600354 | 1.1:+80962608 | MS.gene75147:CDS |
| CATGCCACTCAAATTGCTGG+TGG | 0.604897 | 1.1:-80962817 | None:intergenic |
| AAATGGTGAACATGATGGAA+TGG | 0.621193 | 1.1:+80960785 | None:intergenic |
| AAATCACATCCAGACAGAGG+TGG | 0.644627 | 1.1:+80962397 | MS.gene75147:CDS |
| AGATCCACCAGCAATTTGAG+TGG | 0.671305 | 1.1:+80962813 | MS.gene75147:CDS |
| ATGAACAATTGGAAACTCTG+AGG | 0.682721 | 1.1:+80960866 | MS.gene75147:CDS |
| TGAATCAGAGGTAGAGACTG+AGG | 0.683491 | 1.1:+80962620 | MS.gene75147:CDS |
| GGATAAGAAGACAAAACCAG+AGG | 0.688078 | 1.1:+80962653 | MS.gene75147:CDS |
| CAATATATACCAGCAAGCAG+AGG | 0.697674 | 1.1:+80963426 | MS.gene75147:CDS |
| ACAAAATCACATCCAGACAG+AGG | 0.711170 | 1.1:+80962394 | MS.gene75147:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATATAAAAATTAAA+GGG | - | chr1.1:80961019-80961038 | None:intergenic | 0.0% |
| !!! | TTTTTAAAAAAAAAAAATTT+GGG | - | chr1.1:80962027-80962046 | None:intergenic | 0.0% |
| !! | ATTACTAAAATTAAAATTGA+AGG | - | chr1.1:80961133-80961152 | None:intergenic | 10.0% |
| !! | TTACTAAAATTAAAATTGAA+GGG | - | chr1.1:80961132-80961151 | None:intergenic | 10.0% |
| !! | TTTAAAAAAAAAAAATTTGG+GGG | - | chr1.1:80962025-80962044 | None:intergenic | 10.0% |
| !!! | TTTTTATATTATTTTGCTTT+TGG | + | chr1.1:80961024-80961043 | MS.gene75147:intron | 10.0% |
| !!! | ATTTTAGTGTATACTTTATT+TGG | - | chr1.1:80961402-80961421 | None:intergenic | 15.0% |
| !!! | GATTAAATAACAAACATTTT+TGG | + | chr1.1:80962136-80962155 | MS.gene75147:intron | 15.0% |
| !! | AAAATATCAGGAAAAGAATA+TGG | - | chr1.1:80963359-80963378 | None:intergenic | 20.0% |
| !! | AACAGATATGAATGAATAAA+TGG | - | chr1.1:80961502-80961521 | None:intergenic | 20.0% |
| !! | ACAAAGAACTACTAAATATT+TGG | - | chr1.1:80961453-80961472 | None:intergenic | 20.0% |
| !! | ACAGATATGAATGAATAAAT+GGG | - | chr1.1:80961501-80961520 | None:intergenic | 20.0% |
| !! | ACTAATTTGAAGATTTGATT+AGG | + | chr1.1:80963081-80963100 | MS.gene75147:intron | 20.0% |
| !! | ATGAATAAATGGGAATTTAT+AGG | - | chr1.1:80961491-80961510 | None:intergenic | 20.0% |
| !! | ATTGAATAAACATACATTTG+TGG | + | chr1.1:80962087-80962106 | MS.gene75147:intron | 20.0% |
| !! | TAAGATCATACGAAAAATAT+AGG | - | chr1.1:80962919-80962938 | None:intergenic | 20.0% |
| !! | TCTTGATATTATATGACAAA+TGG | + | chr1.1:80963042-80963061 | MS.gene75147:intron | 20.0% |
| !!! | AAGGTACATAACTTTTTTTA+GGG | + | chr1.1:80961226-80961245 | MS.gene75147:intron | 20.0% |
| !!! | ATGCTAGTAAAACATTTTTT+TGG | - | chr1.1:80963271-80963290 | None:intergenic | 20.0% |
| !!! | TAAGGTACATAACTTTTTTT+AGG | + | chr1.1:80961225-80961244 | MS.gene75147:intron | 20.0% |
| !!! | TACATTTTTAGTTGCAAATA+AGG | + | chr1.1:80961207-80961226 | MS.gene75147:intron | 20.0% |
| !!! | TACTAAATATTTGGAATCTT+TGG | - | chr1.1:80961444-80961463 | None:intergenic | 20.0% |
| !!! | TGTGTTTAACATTTTAGTAA+AGG | + | chr1.1:80963216-80963235 | MS.gene75147:intron | 20.0% |
| !!! | TTTATAATTGGTTCCAAAAT+AGG | + | chr1.1:80962550-80962569 | MS.gene75147:CDS | 20.0% |
| !!! | TTTTTGTTTTTGCATTTAAG+AGG | + | chr1.1:80962051-80962070 | MS.gene75147:intron | 20.0% |
| ! | AAAAGAAAAATGCAAAATGG+GGG | + | chr1.1:80962585-80962604 | MS.gene75147:CDS | 25.0% |
| ! | AAACATTCGTTTCAGAAATT+TGG | - | chr1.1:80962533-80962552 | None:intergenic | 25.0% |
| ! | ACAGAAAACAAAACCATTTA+GGG | + | chr1.1:80961582-80961601 | MS.gene75147:intron | 25.0% |
| ! | ATCTTCAAATTAGTATTCCA+AGG | - | chr1.1:80963075-80963094 | None:intergenic | 25.0% |
| ! | ATTAAAGGGAATTTATGATC+AGG | - | chr1.1:80961005-80961024 | None:intergenic | 25.0% |
| ! | CGAAAAGAAAAATGCAAAAT+GGG | + | chr1.1:80962583-80962602 | MS.gene75147:CDS | 25.0% |
| ! | CTGAAACGAATGTTTATAAT+TGG | + | chr1.1:80962538-80962557 | MS.gene75147:CDS | 25.0% |
| ! | GAAAAGAAAAATGCAAAATG+GGG | + | chr1.1:80962584-80962603 | MS.gene75147:CDS | 25.0% |
| ! | GAAAGAATCTAGTTGAAATT+CGG | + | chr1.1:80962961-80962980 | MS.gene75147:intron | 25.0% |
| ! | GTGTAAAGTTAAATGTTAAG+TGG | + | chr1.1:80961558-80961577 | MS.gene75147:intron | 25.0% |
| ! | GTTAACTTAGTTTAAACTTG+AGG | + | chr1.1:80961926-80961945 | MS.gene75147:intron | 25.0% |
| ! | TAAACTAAGTTAACATCTTG+TGG | - | chr1.1:80961920-80961939 | None:intergenic | 25.0% |
| ! | TACAAGATAAAAAATCAACC+AGG | - | chr1.1:80961798-80961817 | None:intergenic | 25.0% |
| ! | TATTAATTACAGTGACAATG+TGG | - | chr1.1:80961989-80962008 | None:intergenic | 25.0% |
| ! | TCGAAAAGAAAAATGCAAAA+TGG | + | chr1.1:80962582-80962601 | MS.gene75147:CDS | 25.0% |
| ! | TGGTATCATAGTAAATTTAC+CGG | + | chr1.1:80961296-80961315 | MS.gene75147:intron | 25.0% |
| ! | TTAAAGGGAATTTATGATCA+GGG | - | chr1.1:80961004-80961023 | None:intergenic | 25.0% |
| ! | TTACATAGAAAAATCAAACC+TGG | + | chr1.1:80961777-80961796 | MS.gene75147:intron | 25.0% |
| ! | TTTCAACTAGATTCTTTCTA+AGG | - | chr1.1:80962959-80962978 | None:intergenic | 25.0% |
| !! | AATTTGTATCTTTTGGCAAT+TGG | + | chr1.1:80962244-80962263 | MS.gene75147:intron | 25.0% |
| !! | ACAAATTTAGGGGTTTATTT+TGG | + | chr1.1:80963016-80963035 | MS.gene75147:intron | 25.0% |
| !! | GTATACTTTATTTGGTATCA+CGG | - | chr1.1:80961394-80961413 | None:intergenic | 25.0% |
| !! | TCTTTTCCTGATATTTTTCA+GGG | + | chr1.1:80963362-80963381 | MS.gene75147:intron | 25.0% |
| !! | TTCTTTTCCTGATATTTTTC+AGG | + | chr1.1:80963361-80963380 | MS.gene75147:intron | 25.0% |
| !!! | AGGTTTGATTTTTCTATGTA+AGG | - | chr1.1:80961778-80961797 | None:intergenic | 25.0% |
| !!! | ATTGTCATTTTCTACAAATC+AGG | - | chr1.1:80961720-80961739 | None:intergenic | 25.0% |
| !!! | GGTTTGATTTTTCTATGTAA+GGG | - | chr1.1:80961777-80961796 | None:intergenic | 25.0% |
| !!! | GTTATTTTTTCCTTTCATCA+GGG | + | chr1.1:80962325-80962344 | MS.gene75147:intron | 25.0% |
| !!! | TGTTATTTTTTCCTTTCATC+AGG | + | chr1.1:80962324-80962343 | MS.gene75147:intron | 25.0% |
| !!! | TTATTTTTTCCTTTCATCAG+GGG | + | chr1.1:80962326-80962345 | MS.gene75147:intron | 25.0% |
| !!! | TTGGATTGCTTTTCAAAATT+GGG | + | chr1.1:80961043-80961062 | MS.gene75147:intron | 25.0% |
| !!! | TTTGGATTGCTTTTCAAAAT+TGG | + | chr1.1:80961042-80961061 | MS.gene75147:intron | 25.0% |
| AAAAAAAAATTTGGGGGACA+AGG | - | chr1.1:80962019-80962038 | None:intergenic | 30.0% | |
| AAAACAAAACCATTTAGGGA+AGG | + | chr1.1:80961586-80961605 | MS.gene75147:intron | 30.0% | |
| AAACAAAACCATTTAGGGAA+GGG | + | chr1.1:80961587-80961606 | MS.gene75147:intron | 30.0% | |
| AGAAACAACAAGTACAGAAT+GGG | + | chr1.1:80960809-80960828 | MS.gene75147:CDS | 30.0% | |
| CACAGAAAACAAAACCATTT+AGG | + | chr1.1:80961581-80961600 | MS.gene75147:intron | 30.0% | |
| CATTTGTGGATAAACGATTA+TGG | + | chr1.1:80962101-80962120 | MS.gene75147:intron | 30.0% | |
| TCCAAGCAAAGAAAAAATCA+AGG | + | chr1.1:80962479-80962498 | MS.gene75147:CDS | 30.0% | |
| ! | ACCAAGAAGTGTACAAATTT+AGG | + | chr1.1:80963004-80963023 | MS.gene75147:intron | 30.0% |
| ! | CAAGAAGTGTACAAATTTAG+GGG | + | chr1.1:80963006-80963025 | MS.gene75147:intron | 30.0% |
| ! | CCAAGAAGTGTACAAATTTA+GGG | + | chr1.1:80963005-80963024 | MS.gene75147:intron | 30.0% |
| !!! | AATTCCTGCCTTTTTTTTTG+TGG | - | chr1.1:80962228-80962247 | None:intergenic | 30.0% |
| !!! | ATTCCTGCCTTTTTTTTTGT+GGG | - | chr1.1:80962227-80962246 | None:intergenic | 30.0% |
| !!! | TCCTTGATTTTTTCTTTGCT+TGG | - | chr1.1:80962483-80962502 | None:intergenic | 30.0% |
| AACATATTCCGTGTTTCCAT+CGG | + | chr1.1:80962779-80962798 | MS.gene75147:CDS | 35.0% | |
| AACTAGTAACACTGAATCAG+AGG | + | chr1.1:80962608-80962627 | MS.gene75147:CDS | 35.0% | |
| ACAAAACCACCTTCATCTTT+GGG | + | chr1.1:80961092-80961111 | MS.gene75147:intron | 35.0% | |
| AGCATAACCATAAGTACATG+AGG | + | chr1.1:80961843-80961862 | MS.gene75147:intron | 35.0% | |
| ATATCTGTTCTTGTGTCAGT+TGG | + | chr1.1:80961513-80961532 | MS.gene75147:intron | 35.0% | |
| ATGAACAATTGGAAACTCTG+AGG | + | chr1.1:80960866-80960885 | MS.gene75147:CDS | 35.0% | |
| CAGAAACAACAAGTACAGAA+TGG | + | chr1.1:80960808-80960827 | MS.gene75147:CDS | 35.0% | |
| CCCTAAATTTGTACACTTCT+TGG | - | chr1.1:80963008-80963027 | None:intergenic | 35.0% | |
| GCTTTGATTATCACTAGAAC+AGG | - | chr1.1:80961676-80961695 | None:intergenic | 35.0% | |
| GTCATTCCCTGAAAAATATC+AGG | - | chr1.1:80963371-80963390 | None:intergenic | 35.0% | |
| TGACAAATGGACATTAACCT+TGG | + | chr1.1:80963055-80963074 | MS.gene75147:intron | 35.0% | |
| TGACTATCTAGCTGGAAAAA+TGG | + | chr1.1:80963387-80963406 | MS.gene75147:CDS | 35.0% | |
| TGTTGAGAATGAAATTCCTC+TGG | - | chr1.1:80962672-80962691 | None:intergenic | 35.0% | |
| TTAAACTTGAGGTTCCTCAA+GGG | + | chr1.1:80961937-80961956 | MS.gene75147:intron | 35.0% | |
| TTGTTGTAGATGTGCATGTT+TGG | + | chr1.1:80961276-80961295 | MS.gene75147:intron | 35.0% | |
| TTTAAACTTGAGGTTCCTCA+AGG | + | chr1.1:80961936-80961955 | MS.gene75147:intron | 35.0% | |
| ! | AAAGCATTCCCTATTACCTA+AGG | + | chr1.1:80961691-80961710 | MS.gene75147:intron | 35.0% |
| ! | ACTTGACAAGTTGAAAGCTT+TGG | - | chr1.1:80961881-80961900 | None:intergenic | 35.0% |
| ! | AGCATTTCTTTAGAGAATGC+TGG | - | chr1.1:80962301-80962320 | None:intergenic | 35.0% |
| ! | AGGCAGGAATTTGTATCTTT+TGG | + | chr1.1:80962237-80962256 | MS.gene75147:intron | 35.0% |
| ! | TTTGAGTCATCGTGATTTTG+AGG | - | chr1.1:80961357-80961376 | None:intergenic | 35.0% |
| !! | CTGGAAAAATGGAAGTATCT+GGG | + | chr1.1:80963398-80963417 | MS.gene75147:CDS | 35.0% |
| !! | GCAATTCAGAGCATTTTTCT+TGG | - | chr1.1:80962734-80962753 | None:intergenic | 35.0% |
| !! | TCAAGAGTACTTCTGATTCT+AGG | - | chr1.1:80962166-80962185 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTCTTCTTATCCT+TGG | - | chr1.1:80962652-80962671 | None:intergenic | 35.0% |
| !!! | TTCCTGCCTTTTTTTTTGTG+GGG | - | chr1.1:80962226-80962245 | None:intergenic | 35.0% |
| AAATTGGTACAAACACCAGC+AGG | + | chr1.1:80961611-80961630 | MS.gene75147:intron | 40.0% | |
| AAGTCAAAGCCCAAAGATGA+AGG | - | chr1.1:80961104-80961123 | None:intergenic | 40.0% | |
| ACAAAATCACATCCAGACAG+AGG | + | chr1.1:80962394-80962413 | MS.gene75147:CDS | 40.0% | |
| ATCAGGATGCCTTAGGTAAT+AGG | - | chr1.1:80961703-80961722 | None:intergenic | 40.0% | |
| CAATATATACCAGCAAGCAG+AGG | + | chr1.1:80963426-80963445 | MS.gene75147:CDS | 40.0% | |
| CACAAAACCACCTTCATCTT+TGG | + | chr1.1:80961091-80961110 | MS.gene75147:intron | 40.0% | |
| CACACATTCATTCCCTCTTT+AGG | - | chr1.1:80961644-80961663 | None:intergenic | 40.0% | |
| CCAATTTACCCTTCCCTAAA+TGG | - | chr1.1:80961598-80961617 | None:intergenic | 40.0% | |
| CCATTTAGGGAAGGGTAAAT+TGG | + | chr1.1:80961595-80961614 | MS.gene75147:intron | 40.0% | |
| CGAATATACGCTCAAGAATC+TGG | - | chr1.1:80962443-80962462 | None:intergenic | 40.0% | |
| CGTATATTCGATCAGGGAAA+TGG | + | chr1.1:80962453-80962472 | MS.gene75147:CDS | 40.0% | |
| CTAAAGAGGGAATGAATGTG+TGG | + | chr1.1:80961642-80961661 | MS.gene75147:intron | 40.0% | |
| CTCAACAAAATGCTGCTCTA+GGG | + | chr1.1:80962685-80962704 | MS.gene75147:CDS | 40.0% | |
| CTCAACAAGCTGTTCACAAA+TGG | - | chr1.1:80960914-80960933 | None:intergenic | 40.0% | |
| CTTACCCCCCACAAAAAAAA+AGG | + | chr1.1:80962217-80962236 | MS.gene75147:intron | 40.0% | |
| CTTGAGCGTATATTCGATCA+GGG | + | chr1.1:80962447-80962466 | MS.gene75147:CDS | 40.0% | |
| GCATCTCTACAAAATCACCA+CGG | - | chr1.1:80961327-80961346 | None:intergenic | 40.0% | |
| GCTAACACCTCATGTACTTA+TGG | - | chr1.1:80961853-80961872 | None:intergenic | 40.0% | |
| GGATAAGAAGACAAAACCAG+AGG | + | chr1.1:80962653-80962672 | MS.gene75147:CDS | 40.0% | |
| GGTGATGACTGATGAACAAT+TGG | + | chr1.1:80960855-80960874 | MS.gene75147:CDS | 40.0% | |
| TAAATTTACCGGTATCACCG+TGG | + | chr1.1:80961307-80961326 | MS.gene75147:intron | 40.0% | |
| TCAACAAAATGCTGCTCTAG+GGG | + | chr1.1:80962686-80962705 | MS.gene75147:CDS | 40.0% | |
| TCAGGATGCCTTAGGTAATA+GGG | - | chr1.1:80961702-80961721 | None:intergenic | 40.0% | |
| TCTACAAATCAGGATGCCTT+AGG | - | chr1.1:80961710-80961729 | None:intergenic | 40.0% | |
| TCTCAACAAAATGCTGCTCT+AGG | + | chr1.1:80962684-80962703 | MS.gene75147:CDS | 40.0% | |
| TCTTGAGCGTATATTCGATC+AGG | + | chr1.1:80962446-80962465 | MS.gene75147:CDS | 40.0% | |
| TGACAATGTGGTCATTTCGA+GGG | - | chr1.1:80961977-80961996 | None:intergenic | 40.0% | |
| TGGAATCTTTGGCGAAATGA+AGG | - | chr1.1:80961433-80961452 | None:intergenic | 40.0% | |
| TGGGGGGTAAGAGAAATATA+AGG | - | chr1.1:80962208-80962227 | None:intergenic | 40.0% | |
| TGTCGAAGCGATGTATGTTA+AGG | + | chr1.1:80960834-80960853 | MS.gene75147:CDS | 40.0% | |
| TTTCAGAAATTTGGCCATGC+TGG | - | chr1.1:80962524-80962543 | None:intergenic | 40.0% | |
| ! | CTCTCACCATTGTAGCTTTT+GGG | + | chr1.1:80963311-80963330 | MS.gene75147:intron | 40.0% |
| ! | TTTTCCTTTCATCAGGGGTT+AGG | + | chr1.1:80962331-80962350 | MS.gene75147:intron | 40.0% |
| !! | ATCTTTGGGCTTTGACTTGT+TGG | + | chr1.1:80961106-80961125 | MS.gene75147:intron | 40.0% |
| !! | CAGAGCATTTTTCTTGGTTC+TGG | - | chr1.1:80962728-80962747 | None:intergenic | 40.0% |
| !! | GCTGGAAAAATGGAAGTATC+TGG | + | chr1.1:80963397-80963416 | MS.gene75147:CDS | 40.0% |
| !!! | TCCTGCCTTTTTTTTTGTGG+GGG | - | chr1.1:80962225-80962244 | None:intergenic | 40.0% |
| AAATCACATCCAGACAGAGG+TGG | + | chr1.1:80962397-80962416 | MS.gene75147:CDS | 45.0% | |
| AATTGTAGTCCTCTGCTTGC+TGG | - | chr1.1:80963438-80963457 | None:intergenic | 45.0% | |
| AGACATGCCACTCAAATTGC+TGG | - | chr1.1:80962823-80962842 | None:intergenic | 45.0% | |
| AGATCCACCAGCAATTTGAG+TGG | + | chr1.1:80962813-80962832 | MS.gene75147:CDS | 45.0% | |
| AGCAGGACTACTTCCTAAAG+AGG | + | chr1.1:80961628-80961647 | MS.gene75147:intron | 45.0% | |
| CAAAATCACCACGGTGATAC+CGG | - | chr1.1:80961318-80961337 | None:intergenic | 45.0% | |
| CCAAAAGCTACAATGGTGAG+AGG | - | chr1.1:80963313-80963332 | None:intergenic | 45.0% | |
| GACAATGTGGTCATTTCGAG+GGG | - | chr1.1:80961976-80961995 | None:intergenic | 45.0% | |
| GCAAGCAGAGGACTACAATT+TGG | + | chr1.1:80963438-80963457 | MS.gene75147:CDS | 45.0% | |
| GCAGGACTACTTCCTAAAGA+GGG | + | chr1.1:80961629-80961648 | MS.gene75147:intron | 45.0% | |
| GTGACAATGTGGTCATTTCG+AGG | - | chr1.1:80961978-80961997 | None:intergenic | 45.0% | |
| TATTCCGTGTTTCCATCGGA+TGG | + | chr1.1:80962783-80962802 | MS.gene75147:CDS | 45.0% | |
| TCAAAGCCCAAAGATGAAGG+TGG | - | chr1.1:80961101-80961120 | None:intergenic | 45.0% | |
| TCAGGGAATGACTATCTAGC+TGG | + | chr1.1:80963379-80963398 | MS.gene75147:intron | 45.0% | |
| TCTGCTCAACAAGATCTTGC+TGG | + | chr1.1:80960949-80960968 | MS.gene75147:CDS | 45.0% | |
| TGAATCAGAGGTAGAGACTG+AGG | + | chr1.1:80962620-80962639 | MS.gene75147:CDS | 45.0% | |
| TGTCAGCCCAAAAGCTACAA+TGG | - | chr1.1:80963320-80963339 | None:intergenic | 45.0% | |
| TTTGGGCTGACAATCAAGAC+TGG | + | chr1.1:80963328-80963347 | MS.gene75147:intron | 45.0% | |
| ! | AGAGACTGAGGTTGATTCCA+AGG | + | chr1.1:80962632-80962651 | MS.gene75147:CDS | 45.0% |
| ! | CCTCTCACCATTGTAGCTTT+TGG | + | chr1.1:80963310-80963329 | MS.gene75147:intron | 45.0% |
| ! | TCAAGAATCTGGAGCTGAAC+CGG | - | chr1.1:80962432-80962451 | None:intergenic | 45.0% |
| ! | TCGATCTAGCACGCCTATTT+TGG | - | chr1.1:80962566-80962585 | None:intergenic | 45.0% |
| ! | TCTTTAGGAAGTAGTCCTGC+TGG | - | chr1.1:80961629-80961648 | None:intergenic | 45.0% |
| !! | GAGTCATCGTGATTTTGAGG+AGG | - | chr1.1:80961354-80961373 | None:intergenic | 45.0% |
| !!! | CCTGCCTTTTTTTTTGTGGG+GGG | - | chr1.1:80962224-80962243 | None:intergenic | 45.0% |
| !! | CAAAATAATATAAAAATTAA+AGG | - | chr1.1:80961020-80961039 | None:intergenic | 5.0% |
| !!! | CTTTTTAAAAAAAAAAAATT+TGG | - | chr1.1:80962028-80962047 | None:intergenic | 5.0% |
| !!! | TTTTAAAAAAAAAAAATTTG+GGG | - | chr1.1:80962026-80962045 | None:intergenic | 5.0% |
| ACTTGAGGTTCCTCAAGGGA+CGG | + | chr1.1:80961941-80961960 | MS.gene75147:intron | 50.0% | |
| CATGCCACTCAAATTGCTGG+TGG | - | chr1.1:80962820-80962839 | None:intergenic | 50.0% | |
| CCCCCCACAAAAAAAAAGGC+AGG | + | chr1.1:80962221-80962240 | MS.gene75147:intron | 50.0% | |
| CTTTCATCAGGGGTTAGGCT+GGG | + | chr1.1:80962336-80962355 | MS.gene75147:intron | 50.0% | |
| GATCTTATACCGCCATCCGA+TGG | - | chr1.1:80962798-80962817 | None:intergenic | 50.0% | |
| GATTTCAACTCCGTCCCTTG+AGG | - | chr1.1:80961954-80961973 | None:intergenic | 50.0% | |
| GCAGAGGACTACAATTTGGC+AGG | + | chr1.1:80963442-80963461 | MS.gene75147:CDS | 50.0% | |
| TTTCATCAGGGGTTAGGCTG+GGG | + | chr1.1:80962337-80962356 | MS.gene75147:intron | 50.0% | |
| ! | TGCGACTCATTGATGACAGC+TGG | + | chr1.1:80962369-80962388 | MS.gene75147:CDS | 50.0% |
| ACCGCCATCCGATGGAAACA+CGG | - | chr1.1:80962790-80962809 | None:intergenic | 55.0% | |
| CCAGCCTAACCCCTGATGAA+AGG | - | chr1.1:80962338-80962357 | None:intergenic | 55.0% | |
| CCTTTCATCAGGGGTTAGGC+TGG | + | chr1.1:80962335-80962354 | MS.gene75147:intron | 55.0% | |
| GCTACTGAACTCAGCCAGCA+TGG | + | chr1.1:80962507-80962526 | MS.gene75147:CDS | 55.0% | |
| TCCGTGTTTCCATCGGATGG+CGG | + | chr1.1:80962786-80962805 | MS.gene75147:CDS | 55.0% | |
| TGTAGGAGTCCACCTCTGTC+TGG | - | chr1.1:80962409-80962428 | None:intergenic | 55.0% | |
| ! | ACAGAGGTGGACTCCTACAC+CGG | + | chr1.1:80962410-80962429 | MS.gene75147:CDS | 55.0% |
| ! | ATCTGGAGCTGAACCGGTGT+AGG | - | chr1.1:80962426-80962445 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 80960787 | 80963468 | 80960787 | ID=MS.gene75147 |
| chr1.1 | mRNA | 80960787 | 80963468 | 80960787 | ID=MS.gene75147.t1;Parent=MS.gene75147 |
| chr1.1 | exon | 80960787 | 80960970 | 80960787 | ID=MS.gene75147.t1.exon1;Parent=MS.gene75147.t1 |
| chr1.1 | CDS | 80960787 | 80960970 | 80960787 | ID=cds.MS.gene75147.t1;Parent=MS.gene75147.t1 |
| chr1.1 | exon | 80962346 | 80962870 | 80962346 | ID=MS.gene75147.t1.exon2;Parent=MS.gene75147.t1 |
| chr1.1 | CDS | 80962346 | 80962870 | 80962346 | ID=cds.MS.gene75147.t1;Parent=MS.gene75147.t1 |
| chr1.1 | exon | 80963383 | 80963468 | 80963383 | ID=MS.gene75147.t1.exon3;Parent=MS.gene75147.t1 |
| chr1.1 | CDS | 80963383 | 80963468 | 80963383 | ID=cds.MS.gene75147.t1;Parent=MS.gene75147.t1 |
| Gene Sequence |
| Protein sequence |
