Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76645.t1 | AFK38876.1 | 70.4 | 294 | 28 | 2 | 1 | 237 | 1 | 292 | 1.60E-77 | 299.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76645.t1 | G7JFX4 | 71.1 | 294 | 26 | 2 | 1 | 237 | 1 | 292 | 1.2e-77 | 299.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene76645 | 0.810521 | 1.11E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene76645 | 0.805689 | 1.18E-49 | -1.69E-46 |
| MS.gene050227 | MS.gene76645 | 0.824368 | 8.38E-54 | -1.69E-46 |
| MS.gene050228 | MS.gene76645 | 0.826017 | 3.42E-54 | -1.69E-46 |
| MS.gene050303 | MS.gene76645 | 0.832908 | 7.23E-56 | -1.69E-46 |
| MS.gene050623 | MS.gene76645 | -0.808567 | 2.91E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene76645 | 0.820172 | 7.89E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene76645 | 0.819817 | 9.52E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene76645 | 0.801257 | 9.81E-49 | -1.69E-46 |
| MS.gene050824 | MS.gene76645 | 0.815738 | 7.92E-52 | -1.69E-46 |
| MS.gene051245 | MS.gene76645 | 0.80242 | 5.66E-49 | -1.69E-46 |
| MS.gene052012 | MS.gene76645 | 0.816498 | 5.36E-52 | -1.69E-46 |
| MS.gene052302 | MS.gene76645 | 0.810068 | 1.39E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene76645 | 0.829484 | 5.02E-55 | -1.69E-46 |
| MS.gene052896 | MS.gene76645 | 0.810102 | 1.36E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene76645 | 0.804688 | 1.92E-49 | -1.69E-46 |
| MS.gene053216 | MS.gene76645 | 0.807767 | 4.30E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene76645 | 0.819284 | 1.26E-52 | -1.69E-46 |
| MS.gene055603 | MS.gene76645 | 0.806603 | 7.59E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene76645 | 0.809351 | 1.98E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene76645 | 0.807527 | 4.84E-50 | -1.69E-46 |
| MS.gene057360 | MS.gene76645 | 0.800038 | 1.74E-48 | -1.69E-46 |
| MS.gene058084 | MS.gene76645 | 0.803566 | 3.28E-49 | -1.69E-46 |
| MS.gene058399 | MS.gene76645 | 0.81547 | 9.09E-52 | -1.69E-46 |
| MS.gene059249 | MS.gene76645 | 0.803544 | 3.31E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene76645 | 0.809441 | 1.89E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene76645 | 0.803879 | 2.82E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene76645 | 0.822132 | 2.79E-53 | -1.69E-46 |
| MS.gene060586 | MS.gene76645 | 0.834722 | 2.54E-56 | -1.69E-46 |
| MS.gene060879 | MS.gene76645 | 0.804806 | 1.81E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene76645 | -0.806715 | 7.19E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76645.t1 | MTR_4g026500 | 70.408 | 294 | 28 | 3 | 1 | 237 | 1 | 292 | 1.01e-132 | 375 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76645.t1 | AT1G73440 | 36.100 | 241 | 89 | 4 | 38 | 233 | 33 | 253 | 8.15e-40 | 138 |
Find 42 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAGCAAGGCTGAGAAAA+AGG | 0.215319 | 4.1:-72508458 | MS.gene76645:CDS |
| TCTGACTTTGAAAATGCTTC+TGG | 0.225142 | 4.1:-72510342 | MS.gene76645:CDS |
| GTTCGTTGCAACATGATAAA+AGG | 0.253009 | 4.1:-72506531 | MS.gene76645:CDS |
| AAGCCTCTGCTGAATCTTGC+AGG | 0.315720 | 4.1:+72508509 | None:intergenic |
| GTACACTTCTTCCAGCTTGA+TGG | 0.320894 | 4.1:-72508246 | MS.gene76645:intron |
| AGATAAAGAGTTGGTTGATA+TGG | 0.330534 | 4.1:-72507269 | MS.gene76645:CDS |
| AAGGTGAAAAGTAGAGTAAC+TGG | 0.368991 | 4.1:-72508739 | MS.gene76645:CDS |
| TTCCGATTGTGAATTGGATT+CGG | 0.377799 | 4.1:+72510659 | None:intergenic |
| CTGACTTTGAAAATGCTTCT+GGG | 0.382009 | 4.1:-72510341 | MS.gene76645:CDS |
| TCTTTCTTCCGATTGTGAAT+TGG | 0.402545 | 4.1:+72510653 | None:intergenic |
| CATTCAGATTCAAGAAGATA+AGG | 0.438392 | 4.1:-72508431 | MS.gene76645:CDS |
| CTCAGTCATTTGCAGCCGAC+TGG | 0.475257 | 4.1:+72508281 | None:intergenic |
| TTCTGGGTCACGCAAAAGAA+AGG | 0.482859 | 4.1:-72510325 | MS.gene76645:intron |
| ATCCGAATCCAATTCACAAT+CGG | 0.485780 | 4.1:-72510661 | MS.gene76645:CDS |
| ATTCAGATTCAAGAAGATAA+GGG | 0.489706 | 4.1:-72508430 | MS.gene76645:CDS |
| TTCGTTGCTTTGATAGTGAT+GGG | 0.509344 | 4.1:-72507246 | MS.gene76645:CDS |
| GGCGAAGAACAAAAGTTTGA+AGG | 0.509867 | 4.1:-72508758 | MS.gene76645:CDS |
| GTTCGTTGCTTTGATAGTGA+TGG | 0.510982 | 4.1:-72507247 | MS.gene76645:CDS |
| TGACATGCAGAAGCAGGAAA+AGG | 0.519012 | 4.1:-72507349 | MS.gene76645:intron |
| TTGATAGTGATGGGGATGGA+AGG | 0.522236 | 4.1:-72507237 | MS.gene76645:CDS |
| TTTCTCGTAATCCGACATCA+TGG | 0.526301 | 4.1:+72510572 | None:intergenic |
| GTTTGCTCTAACAAGACTGT+AGG | 0.531613 | 4.1:-72508484 | MS.gene76645:CDS |
| TGCATGGACAGATAAAGAGT+TGG | 0.558958 | 4.1:-72507278 | MS.gene76645:CDS |
| TTATCAAATTACCATCAAGC+TGG | 0.569027 | 4.1:+72508235 | None:intergenic |
| TGATAGTGATGGGGATGGAA+GGG | 0.571305 | 4.1:-72507236 | MS.gene76645:intron |
| AGAAGATGAAGCTTTGATGC+AGG | 0.576620 | 4.1:-72508680 | MS.gene76645:intron |
| TTTGCTCTAACAAGACTGTA+GGG | 0.581024 | 4.1:-72508483 | MS.gene76645:CDS |
| TTCCCTGCAAGATTCAGCAG+AGG | 0.584690 | 4.1:-72508512 | MS.gene76645:CDS |
| GGAAGAAAGAACATCATCAT+CGG | 0.593732 | 4.1:-72510640 | MS.gene76645:CDS |
| AGCCTCTGCTGAATCTTGCA+GGG | 0.605856 | 4.1:+72508510 | None:intergenic |
| TGCTTTGATAGTGATGGGGA+TGG | 0.606758 | 4.1:-72507241 | MS.gene76645:CDS |
| ACTACTACTAACATTCCGTA+CGG | 0.610925 | 4.1:+72510596 | None:intergenic |
| TTTGCCAACAGTTTGCCAGT+CGG | 0.618365 | 4.1:-72508296 | MS.gene76645:intron |
| TAGTAGTAGTACCATGATGT+CGG | 0.624728 | 4.1:-72510583 | MS.gene76645:CDS |
| AGAGTAACTGGAAAGAAGCA+TGG | 0.632044 | 4.1:-72508727 | MS.gene76645:CDS |
| AAGCAGAAGAAGAAACCGTA+CGG | 0.641495 | 4.1:-72510611 | MS.gene76645:CDS |
| CAATCTTCCGAAAATCGTCA+AGG | 0.656112 | 4.1:+72506556 | None:intergenic |
| TCGTTGCTTTGATAGTGATG+GGG | 0.660414 | 4.1:-72507245 | MS.gene76645:CDS |
| GACTGTAGGGAACATCAGCA+AGG | 0.680978 | 4.1:-72508470 | MS.gene76645:CDS |
| GAATTGCAGAAAACAAAGCG+AGG | 0.702523 | 4.1:-72510536 | MS.gene76645:intron |
| CAGTCGGCTGCAAATGACTG+AGG | 0.715409 | 4.1:-72508280 | MS.gene76645:CDS |
| GTAACTGGAAAGAAGCATGG+TGG | 0.736461 | 4.1:-72508724 | MS.gene76645:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAATAAATTTAAATA+TGG | + | chr4.1:72510575-72510594 | None:intergenic | 0.0% |
| !! | AAAATAAAATTATGAATAAG+AGG | - | chr4.1:72509586-72509605 | MS.gene76645:intron | 10.0% |
| !! | GATACTTAAAATATAAATAT+AGG | - | chr4.1:72508109-72508128 | MS.gene76645:intron | 10.0% |
| !! | TATTAACTAATTAAGTATAA+TGG | - | chr4.1:72510597-72510616 | MS.gene76645:CDS | 10.0% |
| !!! | TCTTATTCATAATTTTATTT+TGG | + | chr4.1:72509587-72509606 | None:intergenic | 10.0% |
| !!! | TTTGTTATTATATAATCAAT+TGG | - | chr4.1:72509188-72509207 | MS.gene76645:intron | 10.0% |
| !! | TCAATTATATATCATTGTAA+GGG | + | chr4.1:72509164-72509183 | None:intergenic | 15.0% |
| !! | TTAGTAGAAATATTATTGAT+TGG | - | chr4.1:72506980-72506999 | MS.gene76645:intron | 15.0% |
| !! | TTCATTCTTATTAATCTATT+CGG | - | chr4.1:72510374-72510393 | MS.gene76645:intron | 15.0% |
| !! | TTTAGATATGTTAATATTGA+AGG | - | chr4.1:72510426-72510445 | MS.gene76645:intron | 15.0% |
| !!! | AACAAGTTTTAATTTTATGT+GGG | + | chr4.1:72509040-72509059 | None:intergenic | 15.0% |
| !!! | TTCATAATTTTATTTTGGAT+TGG | + | chr4.1:72509582-72509601 | None:intergenic | 15.0% |
| !! | AAGAAAGAAGAACAAAAAAT+CGG | - | chr4.1:72508786-72508805 | MS.gene76645:intron | 20.0% |
| !! | AATATAAATATAGGTGAAGT+TGG | - | chr4.1:72508118-72508137 | MS.gene76645:intron | 20.0% |
| !! | CACATAAAATTAAAACTTGT+TGG | - | chr4.1:72509039-72509058 | MS.gene76645:intron | 20.0% |
| !! | GTCAATTATATATCATTGTA+AGG | + | chr4.1:72509165-72509184 | None:intergenic | 20.0% |
| !! | GTTGATCTATTCATTTAAAA+TGG | - | chr4.1:72509094-72509113 | MS.gene76645:intron | 20.0% |
| !! | TAAACTGAAAACAATTTGTA+CGG | - | chr4.1:72509432-72509451 | MS.gene76645:intron | 20.0% |
| !! | TAGATATTAAAAAGCAACTT+TGG | + | chr4.1:72508875-72508894 | None:intergenic | 20.0% |
| !! | TCATTCTTATTAATCTATTC+GGG | - | chr4.1:72510375-72510394 | MS.gene76645:intron | 20.0% |
| !! | TTAATTTCATAGACCTTAAA+AGG | + | chr4.1:72510332-72510351 | None:intergenic | 20.0% |
| !! | TTGAATATGTAAATGAAGAT+AGG | - | chr4.1:72509742-72509761 | MS.gene76645:intron | 20.0% |
| !! | TTTCCTAAACACTTAAAAAA+TGG | + | chr4.1:72507827-72507846 | None:intergenic | 20.0% |
| !!! | AAGGTTTTCTAAGTAAAAAT+GGG | + | chr4.1:72510304-72510323 | None:intergenic | 20.0% |
| !!! | AAGTCTATGAAATTAGTTTA+TGG | - | chr4.1:72507845-72507864 | MS.gene76645:intron | 20.0% |
| !!! | ATCTATTTTACAATTTATGC+AGG | - | chr4.1:72507389-72507408 | MS.gene76645:intron | 20.0% |
| !!! | CAACAAGTTTTAATTTTATG+TGG | + | chr4.1:72509041-72509060 | None:intergenic | 20.0% |
| !!! | TTACCATTTTTTAAGTGTTT+AGG | - | chr4.1:72507821-72507840 | MS.gene76645:intron | 20.0% |
| ! | AAATGAATAGATCAACAAGA+TGG | + | chr4.1:72509090-72509109 | None:intergenic | 25.0% |
| ! | AATATGTAAATGAAGATAGG+AGG | - | chr4.1:72509745-72509764 | MS.gene76645:intron | 25.0% |
| ! | AATTGAAAGAACTACAAAGA+CGG | + | chr4.1:72508847-72508866 | None:intergenic | 25.0% |
| ! | AGTAATTATGTAAGTTCCAA+GGG | + | chr4.1:72507010-72507029 | None:intergenic | 25.0% |
| ! | ATTCAGATTCAAGAAGATAA+GGG | - | chr4.1:72508763-72508782 | MS.gene76645:intron | 25.0% |
| ! | ATTCTACCATGAAAATAAGT+TGG | + | chr4.1:72508268-72508287 | None:intergenic | 25.0% |
| ! | CATAAACTAAAGTGATATAG+TGG | + | chr4.1:72510266-72510285 | None:intergenic | 25.0% |
| ! | GTGAGCATCTATTTATTAAT+TGG | - | chr4.1:72509221-72509240 | MS.gene76645:intron | 25.0% |
| ! | TACTTATCAGATAAGATCTA+TGG | + | chr4.1:72507928-72507947 | None:intergenic | 25.0% |
| ! | TAGTAATTATGTAAGTTCCA+AGG | + | chr4.1:72507011-72507030 | None:intergenic | 25.0% |
| ! | TATACTGTCAAAGTATACTA+TGG | - | chr4.1:72510137-72510156 | MS.gene76645:intron | 25.0% |
| ! | TTCTAAGTAAAAATGGGAAA+AGG | + | chr4.1:72510298-72510317 | None:intergenic | 25.0% |
| ! | TTTCAATGAAGAAACCATTT+GGG | + | chr4.1:72506702-72506721 | None:intergenic | 25.0% |
| !! | AAAAAAGTGACCTTTTCTAT+TGG | + | chr4.1:72507308-72507327 | None:intergenic | 25.0% |
| !! | ATGCAATTATCTGATAATGT+AGG | - | chr4.1:72507724-72507743 | MS.gene76645:intron | 25.0% |
| !! | CAAGGTTTTCTAAGTAAAAA+TGG | + | chr4.1:72510305-72510324 | None:intergenic | 25.0% |
| !! | TTTTCAATGAAGAAACCATT+TGG | + | chr4.1:72506703-72506722 | None:intergenic | 25.0% |
| !! | TTTTGCCTTTACTTACTTTA+GGG | - | chr4.1:72509462-72509481 | MS.gene76645:intron | 25.0% |
| !! | TTTTTGCCTTTACTTACTTT+AGG | - | chr4.1:72509461-72509480 | MS.gene76645:intron | 25.0% |
| !!! | AACTTATTTTCATGGTAGAA+TGG | - | chr4.1:72508267-72508286 | MS.gene76645:CDS | 25.0% |
| !!! | ACCTTCAATTTTAACTTAGA+TGG | - | chr4.1:72510046-72510065 | MS.gene76645:intron | 25.0% |
| !!! | AGGTCACTTTTTTTTTTTTG+AGG | - | chr4.1:72507315-72507334 | MS.gene76645:CDS | 25.0% |
| !!! | CCTTCAATTTTAACTTAGAT+GGG | - | chr4.1:72510047-72510066 | MS.gene76645:intron | 25.0% |
| !!! | GATTTTGAGTCTTGTAAATA+AGG | - | chr4.1:72508015-72508034 | MS.gene76645:intron | 25.0% |
| !!! | GGTCACTTTTTTTTTTTTGA+GGG | - | chr4.1:72507316-72507335 | MS.gene76645:CDS | 25.0% |
| !!! | TCTTGTTTTTTAGATCTTGT+TGG | - | chr4.1:72508539-72508558 | MS.gene76645:intron | 25.0% |
| !!! | TTAAAGCCAACTTATTTTCA+TGG | - | chr4.1:72508259-72508278 | MS.gene76645:CDS | 25.0% |
| !!! | TTTGATTTGAAATGAATGCT+AGG | - | chr4.1:72508306-72508325 | MS.gene76645:intron | 25.0% |
| AAAAGGTCACTAACTAGTTA+GGG | - | chr4.1:72507346-72507365 | MS.gene76645:intron | 30.0% | |
| AAGTATGTGGATACAAAAAC+AGG | - | chr4.1:72508067-72508086 | MS.gene76645:intron | 30.0% | |
| ACAAAACTTCATGAACAATG+TGG | + | chr4.1:72506938-72506957 | None:intergenic | 30.0% | |
| ACTATCCTATAGATCAAGTT+GGG | + | chr4.1:72507623-72507642 | None:intergenic | 30.0% | |
| ACTCCAATTAAGAAGAAGAA+AGG | - | chr4.1:72506728-72506747 | MS.gene76645:intron | 30.0% | |
| ACTGTACTGTATGAAATCTA+TGG | - | chr4.1:72508643-72508662 | MS.gene76645:intron | 30.0% | |
| ACTTAATTGTACTACACTAC+TGG | + | chr4.1:72507137-72507156 | None:intergenic | 30.0% | |
| ATTTAGTCCTTCAAATTGTG+AGG | + | chr4.1:72510466-72510485 | None:intergenic | 30.0% | |
| ATTTCAACTTACACGTGAAT+TGG | - | chr4.1:72509263-72509282 | MS.gene76645:intron | 30.0% | |
| CAATATTCTTATCAGTAGCA+TGG | + | chr4.1:72508600-72508619 | None:intergenic | 30.0% | |
| CATTCAGATTCAAGAAGATA+AGG | - | chr4.1:72508762-72508781 | MS.gene76645:intron | 30.0% | |
| CCATGAATTTAAATACCAAC+AGG | + | chr4.1:72509789-72509808 | None:intergenic | 30.0% | |
| CCCATCTAAGTTAAAATTGA+AGG | + | chr4.1:72510050-72510069 | None:intergenic | 30.0% | |
| CCTGTTGGTATTTAAATTCA+TGG | - | chr4.1:72509786-72509805 | MS.gene76645:intron | 30.0% | |
| CGATTCCTACTGATAAAAAA+AGG | - | chr4.1:72509686-72509705 | MS.gene76645:intron | 30.0% | |
| CTCCAATTAAGAAGAAGAAA+GGG | - | chr4.1:72506729-72506748 | MS.gene76645:intron | 30.0% | |
| GAAAACCCTAAAGTAAGTAA+AGG | + | chr4.1:72509470-72509489 | None:intergenic | 30.0% | |
| GGAAAGATCATTATGTGAAT+AGG | + | chr4.1:72508826-72508845 | None:intergenic | 30.0% | |
| TAAATACCAACAGGAAAACA+GGG | + | chr4.1:72509780-72509799 | None:intergenic | 30.0% | |
| TAAGAGGAATGTTATAGAAC+CGG | - | chr4.1:72509602-72509621 | MS.gene76645:intron | 30.0% | |
| TAATCAAGTTCAAATCCCTT+TGG | - | chr4.1:72507158-72507177 | MS.gene76645:intron | 30.0% | |
| TACTATCCTATAGATCAAGT+TGG | + | chr4.1:72507624-72507643 | None:intergenic | 30.0% | |
| TATAAATGCAGATAGTAGTC+AGG | - | chr4.1:72507660-72507679 | MS.gene76645:intron | 30.0% | |
| TCTATGGCATAAACAATATC+TGG | + | chr4.1:72507912-72507931 | None:intergenic | 30.0% | |
| TGACAGTATACAGATTCTAA+AGG | + | chr4.1:72510127-72510146 | None:intergenic | 30.0% | |
| TGTGAATGTTGTAAACTTCA+GGG | - | chr4.1:72509654-72509673 | MS.gene76645:intron | 30.0% | |
| TTAAATACCAACAGGAAAAC+AGG | + | chr4.1:72509781-72509800 | None:intergenic | 30.0% | |
| TTATCAAATTACCATCAAGC+TGG | + | chr4.1:72508961-72508980 | None:intergenic | 30.0% | |
| TTCAATGAAGAAACCATTTG+GGG | + | chr4.1:72506701-72506720 | None:intergenic | 30.0% | |
| TTCCCTTTCTTCTTCTTAAT+TGG | + | chr4.1:72506734-72506753 | None:intergenic | 30.0% | |
| ! | AAAACCTTGTTCACCTTTTA+AGG | - | chr4.1:72510316-72510335 | MS.gene76645:intron | 30.0% |
| ! | AGATAAAGAGTTGGTTGATA+TGG | - | chr4.1:72509924-72509943 | MS.gene76645:intron | 30.0% |
| ! | ATTTTCAAAGCGTAACTGTT+AGG | + | chr4.1:72508374-72508393 | None:intergenic | 30.0% |
| ! | GAGAACATAGAATAACTTGT+AGG | - | chr4.1:72510016-72510035 | MS.gene76645:intron | 30.0% |
| ! | TCTGAAATATTGCTTAGACA+TGG | - | chr4.1:72510085-72510104 | MS.gene76645:intron | 30.0% |
| ! | TTCTTGTTCTTCCTCATTTT+GGG | + | chr4.1:72506789-72506808 | None:intergenic | 30.0% |
| ! | TTTCTTGTTCTTCCTCATTT+TGG | + | chr4.1:72506790-72506809 | None:intergenic | 30.0% |
| !! | TAATCTATTCGGGTTGATTA+AGG | - | chr4.1:72510385-72510404 | MS.gene76645:intron | 30.0% |
| !! | TATTTTGGATTGGAGATACT+AGG | + | chr4.1:72509572-72509591 | None:intergenic | 30.0% |
| !! | TTTTTGAGGGACAATAGAAA+AGG | - | chr4.1:72507329-72507348 | MS.gene76645:CDS | 30.0% |
| !!! | CTTCTCCTTTTTTTATCAGT+AGG | + | chr4.1:72509694-72509713 | None:intergenic | 30.0% |
| AAATACCAACAGGAAAACAG+GGG | + | chr4.1:72509779-72509798 | None:intergenic | 35.0% | |
| AAGAGGAATGTTATAGAACC+GGG | - | chr4.1:72509603-72509622 | MS.gene76645:intron | 35.0% | |
| AAGGTGAAAAGTAGAGTAAC+TGG | - | chr4.1:72508454-72508473 | MS.gene76645:CDS | 35.0% | |
| AATTGTGAGGTCAGACAATA+TGG | + | chr4.1:72510453-72510472 | None:intergenic | 35.0% | |
| ACTACTACTAACATTCCGTA+CGG | + | chr4.1:72506600-72506619 | None:intergenic | 35.0% | |
| ACTCTTTAGTTGAGCAAACT+AGG | + | chr4.1:72507542-72507561 | None:intergenic | 35.0% | |
| ACTGTATGAAATCTATGGAC+AGG | - | chr4.1:72508648-72508667 | MS.gene76645:intron | 35.0% | |
| AGAAAACAAAGCGAGGTTAA+AGG | - | chr4.1:72506664-72506683 | MS.gene76645:intron | 35.0% | |
| AGAGTATATACCCCAAAATG+AGG | - | chr4.1:72506775-72506794 | MS.gene76645:intron | 35.0% | |
| AGCTTTGCTCTAACTTCAAT+TGG | - | chr4.1:72507216-72507235 | MS.gene76645:intron | 35.0% | |
| AGTAGCATGGCAAAATGTTT+AGG | + | chr4.1:72508587-72508606 | None:intergenic | 35.0% | |
| AGTCAGGAATATGGTTGATT+AGG | - | chr4.1:72507676-72507695 | MS.gene76645:intron | 35.0% | |
| AGTTCAAATCTCTTCGAGAA+TGG | - | chr4.1:72510229-72510248 | MS.gene76645:intron | 35.0% | |
| ATCCGAATCCAATTCACAAT+CGG | - | chr4.1:72506532-72506551 | MS.gene76645:CDS | 35.0% | |
| ATCGAGGTAAAGAACAGTAA+AGG | + | chr4.1:72508405-72508424 | None:intergenic | 35.0% | |
| ATCTCTAGTTAGTGCCATAA+CGG | + | chr4.1:72509497-72509516 | None:intergenic | 35.0% | |
| ATGAAAACCATGGCACATTT+GGG | + | chr4.1:72507983-72508002 | None:intergenic | 35.0% | |
| CATTGTAAGGGCTAAAAATG+TGG | + | chr4.1:72509152-72509171 | None:intergenic | 35.0% | |
| GAAAAGGTCACTAACTAGTT+AGG | - | chr4.1:72507345-72507364 | MS.gene76645:intron | 35.0% | |
| GAATAGATCAACAAGATGGT+TGG | + | chr4.1:72509086-72509105 | None:intergenic | 35.0% | |
| GCAAACATATCAGTAAATGC+TGG | + | chr4.1:72507789-72507808 | None:intergenic | 35.0% | |
| GCTTTGCTCTAACTTCAATT+GGG | - | chr4.1:72507217-72507236 | MS.gene76645:intron | 35.0% | |
| GGAACACAATACACAAAAGT+TGG | + | chr4.1:72510554-72510573 | None:intergenic | 35.0% | |
| GGAAGAAAGAACATCATCAT+CGG | - | chr4.1:72506553-72506572 | MS.gene76645:CDS | 35.0% | |
| GTATCCACATACTTCACATT+GGG | + | chr4.1:72508061-72508080 | None:intergenic | 35.0% | |
| GTCTATATGCATGAAAACCA+TGG | + | chr4.1:72507993-72508012 | None:intergenic | 35.0% | |
| GTGTGAATGTTGTAAACTTC+AGG | - | chr4.1:72509653-72509672 | MS.gene76645:intron | 35.0% | |
| GTTCGTTGCAACATGATAAA+AGG | - | chr4.1:72510662-72510681 | MS.gene76645:CDS | 35.0% | |
| TAAGACGTTGAATGATGCAA+AGG | - | chr4.1:72509521-72509540 | MS.gene76645:intron | 35.0% | |
| TAGACCTTAAAAGGTGAACA+AGG | + | chr4.1:72510323-72510342 | None:intergenic | 35.0% | |
| TAGCGAGTTTCCAATAGAAA+AGG | - | chr4.1:72507295-72507314 | MS.gene76645:CDS | 35.0% | |
| TAGTAGTAGTACCATGATGT+CGG | - | chr4.1:72506610-72506629 | MS.gene76645:intron | 35.0% | |
| TCACTAACTAGTTAGGGATT+TGG | - | chr4.1:72507352-72507371 | MS.gene76645:intron | 35.0% | |
| TCTATTGGAAACTCGCTATT+TGG | + | chr4.1:72507293-72507312 | None:intergenic | 35.0% | |
| TCTTTCTTCCGATTGTGAAT+TGG | + | chr4.1:72506543-72506562 | None:intergenic | 35.0% | |
| TGTATCCACATACTTCACAT+TGG | + | chr4.1:72508062-72508081 | None:intergenic | 35.0% | |
| TTATCAGTAGGAATCGAACT+TGG | + | chr4.1:72509682-72509701 | None:intergenic | 35.0% | |
| TTCCGATTGTGAATTGGATT+CGG | + | chr4.1:72506537-72506556 | None:intergenic | 35.0% | |
| TTTACCTCGATACTAATTGC+AGG | - | chr4.1:72508414-72508433 | MS.gene76645:CDS | 35.0% | |
| TTTGCTCTAACAAGACTGTA+GGG | - | chr4.1:72508710-72508729 | MS.gene76645:CDS | 35.0% | |
| ! | AAGGAAATGTATTTTCGCAG+AGG | - | chr4.1:72508034-72508053 | MS.gene76645:intron | 35.0% |
| ! | ACTAGTTAGGGATTTGGTAT+TGG | - | chr4.1:72507358-72507377 | MS.gene76645:intron | 35.0% |
| ! | AGTTTGCTCAACTAAAGAGT+TGG | - | chr4.1:72507542-72507561 | MS.gene76645:intron | 35.0% |
| ! | ATTATTGATTGGTGAACCCT+TGG | - | chr4.1:72506991-72507010 | MS.gene76645:intron | 35.0% |
| ! | CTATAACTCACGATTTTGCA+TGG | - | chr4.1:72509899-72509918 | MS.gene76645:intron | 35.0% |
| ! | CTGACTTTGAAAATGCTTCT+GGG | - | chr4.1:72506852-72506871 | MS.gene76645:intron | 35.0% |
| ! | GAGACTGTTGATTATTGACA+AGG | - | chr4.1:72509810-72509829 | MS.gene76645:intron | 35.0% |
| ! | TAGGGTTTTCAAATCCGTTA+TGG | - | chr4.1:72509480-72509499 | MS.gene76645:intron | 35.0% |
| ! | TCTGACTTTGAAAATGCTTC+TGG | - | chr4.1:72506851-72506870 | MS.gene76645:intron | 35.0% |
| ! | TCTTGTTCTTCCTCATTTTG+GGG | + | chr4.1:72506788-72506807 | None:intergenic | 35.0% |
| !! | TTAGGGATTTGGTATTGGTT+TGG | - | chr4.1:72507363-72507382 | MS.gene76645:intron | 35.0% |
| !! | TTCGTTGCTTTGATAGTGAT+GGG | - | chr4.1:72509947-72509966 | MS.gene76645:intron | 35.0% |
| !!! | ATGCTACTTTTTGATTGCTG+AGG | - | chr4.1:72508990-72509009 | MS.gene76645:intron | 35.0% |
| !!! | TGCTACTTTTTGATTGCTGA+GGG | - | chr4.1:72508991-72509010 | MS.gene76645:intron | 35.0% |
| AAAGCGAGGTTAAAGGCTAT+GGG | - | chr4.1:72506671-72506690 | MS.gene76645:intron | 40.0% | |
| AACTATCCCTTGAGGTTACA+CGG | + | chr4.1:72510213-72510232 | None:intergenic | 40.0% | |
| AAGCAGAAGAAGAAACCGTA+CGG | - | chr4.1:72506582-72506601 | MS.gene76645:intron | 40.0% | |
| AATCTCACTGTCCACTATCA+GGG | + | chr4.1:72507245-72507264 | None:intergenic | 40.0% | |
| AGACTCCCAACTTGATCTAT+AGG | - | chr4.1:72507615-72507634 | MS.gene76645:intron | 40.0% | |
| AGAGGAATGTTATAGAACCG+GGG | - | chr4.1:72509604-72509623 | MS.gene76645:intron | 40.0% | |
| AGAGTAACTGGAAAGAAGCA+TGG | - | chr4.1:72508466-72508485 | MS.gene76645:CDS | 40.0% | |
| AGGAATCGAGCTTGAACTTT+AGG | - | chr4.1:72508087-72508106 | MS.gene76645:intron | 40.0% | |
| AGTTAGAGCAAAGCTCTCTA+TGG | + | chr4.1:72507211-72507230 | None:intergenic | 40.0% | |
| ATCAGCAAGGCTGAGAAAAA+GGG | - | chr4.1:72508736-72508755 | MS.gene76645:CDS | 40.0% | |
| CAATCTTCCGAAAATCGTCA+AGG | + | chr4.1:72510640-72510659 | None:intergenic | 40.0% | |
| CATGAAAACCATGGCACATT+TGG | + | chr4.1:72507984-72508003 | None:intergenic | 40.0% | |
| GAAGAAGAAAGGGAAAGAGA+AGG | - | chr4.1:72506739-72506758 | MS.gene76645:intron | 40.0% | |
| GAATTGCAGAAAACAAAGCG+AGG | - | chr4.1:72506657-72506676 | MS.gene76645:intron | 40.0% | |
| GAGATTTGAACTATCCCTTG+AGG | + | chr4.1:72510221-72510240 | None:intergenic | 40.0% | |
| GCAGATAGTAGTCAGGAATA+TGG | - | chr4.1:72507667-72507686 | MS.gene76645:intron | 40.0% | |
| GGCGAAGAACAAAAGTTTGA+AGG | - | chr4.1:72508435-72508454 | MS.gene76645:CDS | 40.0% | |
| GTAGTTAAGCTTGTCCATAG+CGG | - | chr4.1:72510176-72510195 | MS.gene76645:intron | 40.0% | |
| GTTTGCTCTAACAAGACTGT+AGG | - | chr4.1:72508709-72508728 | MS.gene76645:CDS | 40.0% | |
| TCTCTCATTAGTTGGTCCTT+CGG | - | chr4.1:72507267-72507286 | MS.gene76645:CDS | 40.0% | |
| TGAGCAAACTAGGATGTGTT+TGG | + | chr4.1:72507532-72507551 | None:intergenic | 40.0% | |
| TGCATGGACAGATAAAGAGT+TGG | - | chr4.1:72509915-72509934 | MS.gene76645:intron | 40.0% | |
| TGTCTGACCTCACAATTTGA+AGG | - | chr4.1:72510456-72510475 | MS.gene76645:intron | 40.0% | |
| TTTCTCGTAATCCGACATCA+TGG | + | chr4.1:72506624-72506643 | None:intergenic | 40.0% | |
| ! | AAAACACTTGTTGGCACCAA+AGG | + | chr4.1:72507177-72507196 | None:intergenic | 40.0% |
| ! | AAACACTTGTTGGCACCAAA+GGG | + | chr4.1:72507176-72507195 | None:intergenic | 40.0% |
| ! | AGAAGATGAAGCTTTGATGC+AGG | - | chr4.1:72508513-72508532 | MS.gene76645:CDS | 40.0% |
| ! | AGCTAAGCCTTGACGATTTT+CGG | - | chr4.1:72510630-72510649 | MS.gene76645:CDS | 40.0% |
| ! | CGGTCAAAATTTTACCGCTA+TGG | + | chr4.1:72510193-72510212 | None:intergenic | 40.0% |
| ! | TTTTGACCGTGTAACCTCAA+GGG | - | chr4.1:72510204-72510223 | MS.gene76645:intron | 40.0% |
| !! | ATTTTGACCGTGTAACCTCA+AGG | - | chr4.1:72510203-72510222 | MS.gene76645:intron | 40.0% |
| !! | GAGATTGGTCTCTCATTAGT+TGG | - | chr4.1:72507259-72507278 | MS.gene76645:CDS | 40.0% |
| !! | GTGCCAACAAGTGTTTTGTT+GGG | - | chr4.1:72507180-72507199 | MS.gene76645:intron | 40.0% |
| !! | GTTCGTTGCTTTGATAGTGA+TGG | - | chr4.1:72509946-72509965 | MS.gene76645:intron | 40.0% |
| !! | TCGTTGCTTTGATAGTGATG+GGG | - | chr4.1:72509948-72509967 | MS.gene76645:intron | 40.0% |
| AGGTCCCAATGTGAAGTATG+TGG | - | chr4.1:72508054-72508073 | MS.gene76645:intron | 45.0% | |
| ATCTCACTGTCCACTATCAG+GGG | + | chr4.1:72507244-72507263 | None:intergenic | 45.0% | |
| CAAAGCGAGGTTAAAGGCTA+TGG | - | chr4.1:72506670-72506689 | MS.gene76645:intron | 45.0% | |
| CAAGTTACCCAAATGTGCCA+TGG | - | chr4.1:72507973-72507992 | MS.gene76645:intron | 45.0% | |
| CAATCTCACTGTCCACTATC+AGG | + | chr4.1:72507246-72507265 | None:intergenic | 45.0% | |
| CATCAGCAAGGCTGAGAAAA+AGG | - | chr4.1:72508735-72508754 | MS.gene76645:CDS | 45.0% | |
| GTACACTTCTTCCAGCTTGA+TGG | - | chr4.1:72508947-72508966 | MS.gene76645:intron | 45.0% | |
| TCTTTCTGACATGCAGAAGC+AGG | - | chr4.1:72509838-72509857 | MS.gene76645:intron | 45.0% | |
| TGACATGCAGAAGCAGGAAA+AGG | - | chr4.1:72509844-72509863 | MS.gene76645:intron | 45.0% | |
| TGGCCCAACAAAACACTTGT+TGG | + | chr4.1:72507186-72507205 | None:intergenic | 45.0% | |
| TTCGCCTGCAATTAGTATCG+AGG | + | chr4.1:72508421-72508440 | None:intergenic | 45.0% | |
| TTCTGGGTCACGCAAAAGAA+AGG | - | chr4.1:72506868-72506887 | MS.gene76645:intron | 45.0% | |
| TTTGCCAACAGTTTGCCAGT+CGG | - | chr4.1:72508897-72508916 | MS.gene76645:intron | 45.0% | |
| ! | GGTGCCAACAAGTGTTTTGT+TGG | - | chr4.1:72507179-72507198 | MS.gene76645:intron | 45.0% |
| ! | GTAACTGGAAAGAAGCATGG+TGG | - | chr4.1:72508469-72508488 | MS.gene76645:CDS | 45.0% |
| ! | TGATAGTGATGGGGATGGAA+GGG | - | chr4.1:72509957-72509976 | MS.gene76645:intron | 45.0% |
| ! | TGTTTCCCCTGTTTTCCTGT+TGG | - | chr4.1:72509771-72509790 | MS.gene76645:intron | 45.0% |
| !! | CTGATAGTGGACAGTGAGAT+TGG | - | chr4.1:72507244-72507263 | MS.gene76645:CDS | 45.0% |
| !! | TGCTTTGATAGTGATGGGGA+TGG | - | chr4.1:72509952-72509971 | MS.gene76645:intron | 45.0% |
| !! | TTGATAGTGATGGGGATGGA+AGG | - | chr4.1:72509956-72509975 | MS.gene76645:intron | 45.0% |
| !!! | TTTTTTATTTTTATTTTTTG+AGG | - | chr4.1:72509343-72509362 | MS.gene76645:intron | 5.0% |
| !!! | TTTTTTGTTTATTAAAAAAA+TGG | - | chr4.1:72509383-72509402 | MS.gene76645:intron | 5.0% |
| AAGCCTCTGCTGAATCTTGC+AGG | + | chr4.1:72508687-72508706 | None:intergenic | 50.0% | |
| AGCCTCTGCTGAATCTTGCA+GGG | + | chr4.1:72508686-72508705 | None:intergenic | 50.0% | |
| GAAACTCGCTATTTGGCCGA+AGG | + | chr4.1:72507286-72507305 | None:intergenic | 50.0% | |
| GACTGTAGGGAACATCAGCA+AGG | - | chr4.1:72508723-72508742 | MS.gene76645:CDS | 50.0% | |
| GAGCAAAGCTCTCTATGGAC+TGG | + | chr4.1:72507206-72507225 | None:intergenic | 50.0% | |
| GGCTATGGGTTTACCCCAAA+TGG | - | chr4.1:72506685-72506704 | MS.gene76645:intron | 50.0% | |
| TCAATTGGGTCCCCTGATAG+TGG | - | chr4.1:72507231-72507250 | MS.gene76645:intron | 50.0% | |
| TTCCCTGCAAGATTCAGCAG+AGG | - | chr4.1:72508681-72508700 | MS.gene76645:CDS | 50.0% | |
| CAACCACTTGCACTAGACCC+CGG | + | chr4.1:72509624-72509643 | None:intergenic | 55.0% | |
| CAGTCGGCTGCAAATGACTG+AGG | - | chr4.1:72508913-72508932 | MS.gene76645:intron | 55.0% | |
| CTCAGTCATTTGCAGCCGAC+TGG | + | chr4.1:72508915-72508934 | None:intergenic | 55.0% | |
| CGGGGTCTAGTGCAAGTGGT+TGG | - | chr4.1:72509622-72509641 | MS.gene76645:intron | 60.0% | |
| GAACCGGGGTCTAGTGCAAG+TGG | - | chr4.1:72509618-72509637 | MS.gene76645:intron | 60.0% | |
| GCAGCCGACTGGCAAACTGT+TGG | + | chr4.1:72508904-72508923 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 72506515 | 72510700 | 72506515 | ID=MS.gene76645 |
| chr4.1 | mRNA | 72506515 | 72510700 | 72506515 | ID=MS.gene76645.t1;Parent=MS.gene76645 |
| chr4.1 | exon | 72510537 | 72510700 | 72510537 | ID=MS.gene76645.t1.exon1;Parent=MS.gene76645.t1 |
| chr4.1 | CDS | 72510537 | 72510700 | 72510537 | ID=cds.MS.gene76645.t1;Parent=MS.gene76645.t1 |
| chr4.1 | exon | 72510326 | 72510383 | 72510326 | ID=MS.gene76645.t1.exon2;Parent=MS.gene76645.t1 |
| chr4.1 | CDS | 72510326 | 72510383 | 72510326 | ID=cds.MS.gene76645.t1;Parent=MS.gene76645.t1 |
| chr4.1 | exon | 72508681 | 72508779 | 72508681 | ID=MS.gene76645.t1.exon3;Parent=MS.gene76645.t1 |
| chr4.1 | CDS | 72508681 | 72508779 | 72508681 | ID=cds.MS.gene76645.t1;Parent=MS.gene76645.t1 |
| chr4.1 | exon | 72508408 | 72508545 | 72508408 | ID=MS.gene76645.t1.exon4;Parent=MS.gene76645.t1 |
| chr4.1 | CDS | 72508408 | 72508545 | 72508408 | ID=cds.MS.gene76645.t1;Parent=MS.gene76645.t1 |
| chr4.1 | exon | 72508247 | 72508307 | 72508247 | ID=MS.gene76645.t1.exon5;Parent=MS.gene76645.t1 |
| chr4.1 | CDS | 72508247 | 72508307 | 72508247 | ID=cds.MS.gene76645.t1;Parent=MS.gene76645.t1 |
| chr4.1 | exon | 72507237 | 72507361 | 72507237 | ID=MS.gene76645.t1.exon6;Parent=MS.gene76645.t1 |
| chr4.1 | CDS | 72507237 | 72507361 | 72507237 | ID=cds.MS.gene76645.t1;Parent=MS.gene76645.t1 |
| chr4.1 | exon | 72506515 | 72506583 | 72506515 | ID=MS.gene76645.t1.exon7;Parent=MS.gene76645.t1 |
| chr4.1 | CDS | 72506515 | 72506583 | 72506515 | ID=cds.MS.gene76645.t1;Parent=MS.gene76645.t1 |
| Gene Sequence |
| Protein sequence |
