Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76662.t1 | XP_003605209.1 | 94 | 199 | 12 | 0 | 1 | 199 | 1 | 199 | 3.90E-101 | 377.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76662.t1 | Q9SHC8 | 50.0 | 206 | 71 | 4 | 19 | 193 | 6 | 210 | 2.0e-45 | 183.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76662.t1 | G7JH03 | 94.0 | 199 | 12 | 0 | 1 | 199 | 1 | 199 | 2.8e-101 | 377.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene76662 | 0.831742 | 1.41E-55 | -1.69E-46 |
| MS.gene050647 | MS.gene76662 | 0.801149 | 1.03E-48 | -1.69E-46 |
| MS.gene05104 | MS.gene76662 | 0.802232 | 6.19E-49 | -1.69E-46 |
| MS.gene051973 | MS.gene76662 | 0.809152 | 2.18E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene76662 | 0.821378 | 4.17E-53 | -1.69E-46 |
| MS.gene05240 | MS.gene76662 | 0.837465 | 5.11E-57 | -1.69E-46 |
| MS.gene052606 | MS.gene76662 | 0.820648 | 6.14E-53 | -1.69E-46 |
| MS.gene053406 | MS.gene76662 | 0.81081 | 9.58E-51 | -1.69E-46 |
| MS.gene054146 | MS.gene76662 | 0.831672 | 1.46E-55 | -1.69E-46 |
| MS.gene054147 | MS.gene76662 | 0.814637 | 1.39E-51 | -1.69E-46 |
| MS.gene054277 | MS.gene76662 | 0.804226 | 2.39E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene76662 | -0.803772 | 2.97E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene76662 | 0.829622 | 4.64E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene76662 | -0.807295 | 5.42E-50 | -1.69E-46 |
| MS.gene056748 | MS.gene76662 | 0.802497 | 5.46E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene76662 | 0.801303 | 9.59E-49 | -1.69E-46 |
| MS.gene056988 | MS.gene76662 | 0.813253 | 2.81E-51 | -1.69E-46 |
| MS.gene057261 | MS.gene76662 | 0.822902 | 1.85E-53 | -1.69E-46 |
| MS.gene058068 | MS.gene76662 | 0.810069 | 1.38E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene76662 | -0.811481 | 6.85E-51 | -1.69E-46 |
| MS.gene058381 | MS.gene76662 | 0.806875 | 6.65E-50 | -1.69E-46 |
| MS.gene058450 | MS.gene76662 | 0.801835 | 7.47E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene76662 | 0.815415 | 9.35E-52 | -1.69E-46 |
| MS.gene059953 | MS.gene76662 | 0.827639 | 1.40E-54 | -1.69E-46 |
| MS.gene059955 | MS.gene76662 | 0.840005 | 1.13E-57 | -1.69E-46 |
| MS.gene060087 | MS.gene76662 | 0.822996 | 1.76E-53 | -1.69E-46 |
| MS.gene060358 | MS.gene76662 | 0.804467 | 2.13E-49 | -1.69E-46 |
| MS.gene061092 | MS.gene76662 | 0.807942 | 3.95E-50 | -1.69E-46 |
| MS.gene061094 | MS.gene76662 | 0.812528 | 4.05E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76662.t1 | MTR_4g026620 | 93.970 | 199 | 12 | 0 | 1 | 199 | 1 | 199 | 9.54e-139 | 385 |
| MS.gene76662.t1 | MTR_4g026830 | 67.539 | 191 | 53 | 3 | 1 | 185 | 1 | 188 | 7.10e-83 | 245 |
| MS.gene76662.t1 | MTR_4g027050 | 57.488 | 207 | 55 | 3 | 19 | 193 | 7 | 212 | 4.05e-76 | 229 |
| MS.gene76662.t1 | MTR_4g026650 | 70.423 | 142 | 36 | 1 | 1 | 136 | 1 | 142 | 3.63e-67 | 204 |
| MS.gene76662.t1 | MTR_4g026780 | 62.827 | 191 | 62 | 3 | 1 | 185 | 1 | 188 | 1.82e-65 | 200 |
| MS.gene76662.t1 | MTR_0135s0080 | 69.504 | 141 | 38 | 1 | 1 | 136 | 1 | 141 | 1.12e-64 | 197 |
| MS.gene76662.t1 | MTR_4g026780 | 57.754 | 187 | 62 | 3 | 1 | 182 | 1 | 175 | 1.25e-64 | 197 |
| MS.gene76662.t1 | MTR_4g026780 | 69.504 | 141 | 38 | 1 | 1 | 136 | 1 | 141 | 3.03e-64 | 197 |
| MS.gene76662.t1 | MTR_4g026780 | 58.537 | 205 | 65 | 4 | 1 | 185 | 1 | 205 | 9.40e-64 | 197 |
| MS.gene76662.t1 | MTR_4g026780 | 58.537 | 205 | 65 | 4 | 1 | 185 | 1 | 205 | 1.34e-63 | 197 |
| MS.gene76662.t1 | MTR_4g101020 | 48.077 | 208 | 76 | 3 | 15 | 190 | 4 | 211 | 6.35e-60 | 187 |
| MS.gene76662.t1 | MTR_5g012420 | 48.529 | 204 | 73 | 3 | 19 | 190 | 9 | 212 | 2.56e-57 | 181 |
| MS.gene76662.t1 | MTR_4g118760 | 61.111 | 126 | 49 | 0 | 19 | 144 | 6 | 131 | 8.27e-47 | 155 |
| MS.gene76662.t1 | MTR_4g118760 | 61.111 | 126 | 49 | 0 | 19 | 144 | 6 | 131 | 1.28e-46 | 155 |
| MS.gene76662.t1 | MTR_5g013320 | 42.458 | 179 | 92 | 2 | 19 | 190 | 7 | 181 | 2.36e-41 | 139 |
| MS.gene76662.t1 | MTR_4g026540 | 46.111 | 180 | 82 | 3 | 21 | 185 | 9 | 188 | 3.50e-40 | 135 |
| MS.gene76662.t1 | MTR_1g081950 | 49.206 | 126 | 64 | 0 | 19 | 144 | 7 | 132 | 5.29e-35 | 128 |
| MS.gene76662.t1 | MTR_4g026730 | 70.690 | 58 | 7 | 1 | 80 | 137 | 78 | 125 | 5.30e-22 | 87.4 |
| MS.gene76662.t1 | MTR_0753s0030 | 58.228 | 79 | 30 | 2 | 31 | 106 | 1 | 79 | 2.65e-21 | 84.0 |
| MS.gene76662.t1 | MTR_5g012420 | 37.857 | 140 | 55 | 3 | 83 | 190 | 1 | 140 | 5.03e-21 | 85.9 |
| MS.gene76662.t1 | MTR_4g026600 | 64.286 | 56 | 19 | 1 | 79 | 134 | 23 | 77 | 8.54e-15 | 67.4 |
| MS.gene76662.t1 | MTR_4g099440 | 35.238 | 105 | 57 | 2 | 93 | 190 | 1 | 101 | 4.10e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76662.t1 | AT2G45140 | 51.813 | 193 | 70 | 3 | 19 | 193 | 6 | 193 | 5.34e-62 | 192 |
| MS.gene76662.t1 | AT2G45140 | 50.000 | 206 | 71 | 4 | 19 | 193 | 6 | 210 | 2.30e-61 | 191 |
| MS.gene76662.t1 | AT3G60600 | 45.778 | 225 | 85 | 5 | 5 | 193 | 4 | 227 | 7.54e-60 | 188 |
| MS.gene76662.t1 | AT3G60600 | 58.571 | 140 | 57 | 1 | 10 | 149 | 14 | 152 | 1.38e-54 | 174 |
| MS.gene76662.t1 | AT3G60600 | 58.571 | 140 | 57 | 1 | 10 | 149 | 14 | 152 | 1.62e-54 | 173 |
| MS.gene76662.t1 | AT4G00170 | 44.976 | 209 | 81 | 5 | 19 | 195 | 7 | 213 | 2.00e-49 | 160 |
| MS.gene76662.t1 | AT2G23830 | 56.303 | 119 | 52 | 0 | 19 | 137 | 7 | 125 | 7.21e-45 | 146 |
| MS.gene76662.t1 | AT5G47180 | 41.243 | 177 | 102 | 2 | 19 | 193 | 10 | 186 | 1.95e-41 | 139 |
| MS.gene76662.t1 | AT5G47180 | 41.243 | 177 | 102 | 2 | 19 | 193 | 10 | 186 | 1.95e-41 | 139 |
| MS.gene76662.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 160 | 306 | 9.88e-41 | 145 |
| MS.gene76662.t1 | AT1G51270 | 48.800 | 125 | 63 | 1 | 25 | 149 | 13 | 136 | 3.73e-36 | 132 |
| MS.gene76662.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 160 | 306 | 9.88e-41 | 145 |
| MS.gene76662.t1 | AT1G51270 | 48.800 | 125 | 63 | 1 | 25 | 149 | 13 | 136 | 3.73e-36 | 132 |
| MS.gene76662.t1 | AT1G51270 | 51.145 | 131 | 63 | 1 | 19 | 149 | 6 | 135 | 1.69e-40 | 141 |
| MS.gene76662.t1 | AT1G51270 | 51.145 | 131 | 63 | 1 | 19 | 149 | 6 | 135 | 1.69e-40 | 141 |
| MS.gene76662.t1 | AT1G51270 | 51.145 | 131 | 63 | 1 | 19 | 149 | 6 | 135 | 1.69e-40 | 141 |
| MS.gene76662.t1 | AT1G51270 | 51.145 | 131 | 63 | 1 | 19 | 149 | 6 | 135 | 1.69e-40 | 141 |
| MS.gene76662.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 160 | 306 | 2.46e-40 | 144 |
| MS.gene76662.t1 | AT1G51270 | 48.800 | 125 | 63 | 1 | 25 | 149 | 13 | 136 | 9.46e-36 | 132 |
| MS.gene76662.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 112 | 258 | 3.71e-40 | 144 |
| MS.gene76662.t1 | AT1G51270 | 47.727 | 88 | 45 | 1 | 62 | 149 | 2 | 88 | 8.97e-22 | 92.8 |
| MS.gene76662.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 112 | 258 | 3.71e-40 | 144 |
| MS.gene76662.t1 | AT1G51270 | 47.727 | 88 | 45 | 1 | 62 | 149 | 2 | 88 | 8.97e-22 | 92.8 |
| MS.gene76662.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 112 | 258 | 3.71e-40 | 144 |
| MS.gene76662.t1 | AT1G51270 | 47.727 | 88 | 45 | 1 | 62 | 149 | 2 | 88 | 8.97e-22 | 92.8 |
| MS.gene76662.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 112 | 258 | 3.71e-40 | 144 |
| MS.gene76662.t1 | AT1G51270 | 47.727 | 88 | 45 | 1 | 62 | 149 | 2 | 88 | 8.97e-22 | 92.8 |
| MS.gene76662.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 160 | 306 | 5.23e-40 | 144 |
| MS.gene76662.t1 | AT1G51270 | 48.800 | 125 | 63 | 1 | 25 | 149 | 13 | 136 | 1.84e-35 | 131 |
| MS.gene76662.t1 | AT1G51270 | 52.800 | 125 | 58 | 1 | 25 | 149 | 13 | 136 | 1.31e-39 | 139 |
| MS.gene76662.t1 | AT1G51270 | 51.145 | 131 | 63 | 1 | 19 | 149 | 6 | 135 | 3.79e-39 | 139 |
| MS.gene76662.t1 | AT4G00170 | 42.021 | 188 | 75 | 5 | 40 | 195 | 1 | 186 | 2.94e-38 | 131 |
| MS.gene76662.t1 | AT1G08820 | 50.000 | 142 | 64 | 2 | 19 | 154 | 6 | 146 | 6.84e-38 | 135 |
| MS.gene76662.t1 | AT1G08820 | 50.000 | 142 | 64 | 2 | 19 | 154 | 6 | 146 | 6.84e-38 | 135 |
| MS.gene76662.t1 | AT1G08820 | 50.000 | 142 | 64 | 2 | 19 | 154 | 6 | 146 | 6.84e-38 | 135 |
| MS.gene76662.t1 | AT1G08820 | 50.000 | 142 | 64 | 2 | 19 | 154 | 6 | 146 | 6.84e-38 | 135 |
| MS.gene76662.t1 | AT1G08820 | 50.000 | 142 | 64 | 2 | 19 | 154 | 6 | 146 | 6.84e-38 | 135 |
| MS.gene76662.t1 | AT1G51270 | 47.761 | 67 | 34 | 1 | 83 | 149 | 1 | 66 | 4.05e-13 | 67.4 |
Find 31 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTTAACAACAGAAAT+TGG | 0.206639 | 4.1:+72294325 | None:intergenic |
| CCATAGATAACTTTGAAATT+TGG | 0.227243 | 4.1:+72292639 | None:intergenic |
| ATTTGATTTATTAGATATTC+AGG | 0.245813 | 4.1:-72292860 | MS.gene76662:intron |
| CCAAATTTCAAAGTTATCTA+TGG | 0.252933 | 4.1:-72292639 | MS.gene76662:CDS |
| AGGTCTACTTGTGATATTAC+AGG | 0.287192 | 4.1:-72293885 | MS.gene76662:intron |
| CTTGTCATGCATAGAATATT+AGG | 0.325098 | 4.1:-72291858 | MS.gene76662:intron |
| TAACAAGTCTGATAATTATC+TGG | 0.360749 | 4.1:-72294065 | MS.gene76662:CDS |
| TGAGCTGGTGACGGTGGGTT+AGG | 0.400337 | 4.1:+72292892 | None:intergenic |
| TTATCGATGCAATGCATGTT+AGG | 0.402557 | 4.1:+72293124 | None:intergenic |
| TATCAGACTTGTTAGACATC+TGG | 0.410398 | 4.1:+72294074 | None:intergenic |
| TTCCTGAGAAATATTGTGTT+AGG | 0.414467 | 4.1:-72293932 | MS.gene76662:CDS |
| TATTGTGTTAGGCCTAATAA+TGG | 0.425729 | 4.1:-72293921 | MS.gene76662:CDS |
| TGATAATTATCTGGCTTTCA+AGG | 0.427384 | 4.1:-72294056 | MS.gene76662:intron |
| GGCAACACAACTCCATTATT+AGG | 0.451335 | 4.1:+72293909 | None:intergenic |
| ATATCTTCTGGGGTTGCACC+AGG | 0.458454 | 4.1:+72293073 | None:intergenic |
| GGCCTAACACAATATTTCTC+AGG | 0.461582 | 4.1:+72293930 | None:intergenic |
| CATGGAAAGTGTAGCTCTTG+AGG | 0.476067 | 4.1:+72294268 | None:intergenic |
| ATGGAAAGTGTAGCTCTTGA+GGG | 0.486542 | 4.1:+72294269 | None:intergenic |
| GGTGACGGTGGGTTAGGAGG+AGG | 0.527380 | 4.1:+72292898 | None:intergenic |
| TACAATGCAAGCTCAAAAGA+AGG | 0.541868 | 4.1:-72293152 | MS.gene76662:CDS |
| CAAAGCATAGTCGCAAAGCC+TGG | 0.544647 | 4.1:-72293091 | MS.gene76662:CDS |
| ATAATGGAGTTGTGTTGCCT+AGG | 0.546547 | 4.1:-72293905 | MS.gene76662:CDS |
| TCAAATTCTGATGCTTGAGC+TGG | 0.556015 | 4.1:+72292877 | None:intergenic |
| GCTGGTGACGGTGGGTTAGG+AGG | 0.558838 | 4.1:+72292895 | None:intergenic |
| GATGCTTGAGCTGGTGACGG+TGG | 0.563681 | 4.1:+72292886 | None:intergenic |
| GCTCTTGAGGGTGTATCTGA+AGG | 0.583919 | 4.1:+72294281 | None:intergenic |
| TCTGATGCTTGAGCTGGTGA+CGG | 0.598495 | 4.1:+72292883 | None:intergenic |
| ATGCTTGAGCTGGTGACGGT+GGG | 0.599124 | 4.1:+72292887 | None:intergenic |
| ATAGAATATTAGGAAGCGTA+TGG | 0.604356 | 4.1:-72291848 | MS.gene76662:intron |
| GTAATATCACAAGTAGACCT+AGG | 0.632852 | 4.1:+72293888 | None:intergenic |
| TCGATGCAATGCATGTTAGG+TGG | 0.713518 | 4.1:+72293127 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATTAATTTAATATT+TGG | + | chr4.1:72293760-72293779 | None:intergenic | 0.0% |
| !!! | AGTATTTTTAGTATAATTTT+TGG | + | chr4.1:72294083-72294102 | None:intergenic | 10.0% |
| !!! | CTTGAATTTTTTATTATTTT+AGG | - | chr4.1:72293487-72293506 | MS.gene76662:intron | 10.0% |
| !!! | TATATATTTTTTTGGTTTTT+GGG | + | chr4.1:72291933-72291952 | None:intergenic | 10.0% |
| !!! | TTATAATTTTGATTTAGAAA+AGG | - | chr4.1:72292175-72292194 | MS.gene76662:intron | 10.0% |
| !!! | TTATATATTTTTTTGGTTTT+TGG | + | chr4.1:72291934-72291953 | None:intergenic | 10.0% |
| !!! | TTCTCATTTATATATTTTTT+TGG | + | chr4.1:72291941-72291960 | None:intergenic | 10.0% |
| !!! | TTTTATATATTGTGTTATTT+AGG | - | chr4.1:72292147-72292166 | MS.gene76662:intron | 10.0% |
| !! | ATAATTTAACAATTATGACA+AGG | + | chr4.1:72294222-72294241 | None:intergenic | 15.0% |
| !! | ATCTTTATAAAAACAAAACA+TGG | - | chr4.1:72292451-72292470 | MS.gene76662:intron | 15.0% |
| !! | TCTTTATAAAAACAAAACAT+GGG | - | chr4.1:72292452-72292471 | MS.gene76662:intron | 15.0% |
| !!! | ATTTGATTTATTAGATATTC+AGG | - | chr4.1:72293296-72293315 | MS.gene76662:intron | 15.0% |
| !!! | TATTTTCTTTAACACTTTTT+TGG | - | chr4.1:72292013-72292032 | MS.gene76662:intron | 15.0% |
| !!! | TTGAAATGTTTTATTTGAAT+AGG | + | chr4.1:72293982-72294001 | None:intergenic | 15.0% |
| !! | AAGGAATTATAGTCATATAT+GGG | + | chr4.1:72293928-72293947 | None:intergenic | 20.0% |
| !! | ATTCAATAAAACGTATCAAT+AGG | + | chr4.1:72293390-72293409 | None:intergenic | 20.0% |
| !! | GCACAATATACAAAATTAAT+TGG | - | chr4.1:72293356-72293375 | MS.gene76662:intron | 20.0% |
| !! | TATGAGTTATCAATTGTAAA+AGG | - | chr4.1:72292745-72292764 | MS.gene76662:intron | 20.0% |
| !! | TTAATATTTGGAAACCAAAT+AGG | + | chr4.1:72293748-72293767 | None:intergenic | 20.0% |
| !! | TTCAATAAAACGTATCAATA+GGG | + | chr4.1:72293389-72293408 | None:intergenic | 20.0% |
| !! | TTCAATTTAACAACAGAAAT+TGG | + | chr4.1:72291834-72291853 | None:intergenic | 20.0% |
| !!! | ATCAAAGAATTTTCAATGTT+AGG | + | chr4.1:72294027-72294046 | None:intergenic | 20.0% |
| !!! | CACATTTTATCTTAAAGTTT+TGG | - | chr4.1:72293630-72293649 | MS.gene76662:intron | 20.0% |
| !!! | GTTTTTATAAAGATAAGCTA+AGG | + | chr4.1:72292445-72292464 | None:intergenic | 20.0% |
| !!! | TATATTGTGTTATTTAGGAA+AGG | - | chr4.1:72292152-72292171 | MS.gene76662:intron | 20.0% |
| !!! | TCAAAGAATTTTCAATGTTA+GGG | + | chr4.1:72294026-72294045 | None:intergenic | 20.0% |
| !!! | TCAACTATTTGTTTTTTTAG+AGG | + | chr4.1:72292821-72292840 | None:intergenic | 20.0% |
| ! | AACAAGACACTAAATGAAAA+AGG | + | chr4.1:72291981-72292000 | None:intergenic | 25.0% |
| ! | AAGATTTACCATGAAAACAT+TGG | + | chr4.1:72292905-72292924 | None:intergenic | 25.0% |
| ! | AATTAATAGACCAAATGTTC+TGG | + | chr4.1:72293959-72293978 | None:intergenic | 25.0% |
| ! | AGAAGATATCACTTCAAAAA+TGG | - | chr4.1:72293097-72293116 | MS.gene76662:CDS | 25.0% |
| ! | CAAGGAATTATAGTCATATA+TGG | + | chr4.1:72293929-72293948 | None:intergenic | 25.0% |
| ! | CATATATGACTATAATTCCT+TGG | - | chr4.1:72293927-72293946 | MS.gene76662:CDS | 25.0% |
| ! | CCAAATTTCAAAGTTATCTA+TGG | - | chr4.1:72293517-72293536 | MS.gene76662:intron | 25.0% |
| ! | TAACAAGTCTGATAATTATC+TGG | - | chr4.1:72292091-72292110 | MS.gene76662:intron | 25.0% |
| ! | TACTATTTACATGAACAACT+TGG | - | chr4.1:72293666-72293685 | MS.gene76662:intron | 25.0% |
| ! | TGAAAGTGAGAATAAAAGAA+CGG | + | chr4.1:72292945-72292964 | None:intergenic | 25.0% |
| !! | AAAACAAATAGTTGATGTGT+TGG | - | chr4.1:72292826-72292845 | MS.gene76662:intron | 25.0% |
| !! | TAAAATTGTCAGATTTTGCA+TGG | + | chr4.1:72294166-72294185 | None:intergenic | 25.0% |
| !!! | ATGTAGTTTTTTCAAGATTC+TGG | - | chr4.1:72293192-72293211 | MS.gene76662:intron | 25.0% |
| !!! | ATTTTTGAAGTGATATCTTC+TGG | + | chr4.1:72293098-72293117 | None:intergenic | 25.0% |
| !!! | CCATAGATAACTTTGAAATT+TGG | + | chr4.1:72293520-72293539 | None:intergenic | 25.0% |
| !!! | GATTGTTGACTTTCAATTTT+AGG | - | chr4.1:72294108-72294127 | MS.gene76662:CDS | 25.0% |
| !!! | GTAACACCATTTTTCTATTT+GGG | - | chr4.1:72293888-72293907 | MS.gene76662:CDS | 25.0% |
| !!! | TTTTTGAAGTGATATCTTCT+GGG | + | chr4.1:72293097-72293116 | None:intergenic | 25.0% |
| AAATCACATTGAGACCTATT+TGG | - | chr4.1:72293731-72293750 | MS.gene76662:intron | 30.0% | |
| ATCAATTGAGCTACATTTAC+TGG | - | chr4.1:72292644-72292663 | MS.gene76662:CDS | 30.0% | |
| ATTTACCATGAAAACATTGG+AGG | + | chr4.1:72292902-72292921 | None:intergenic | 30.0% | |
| CTTGTCATGCATAGAATATT+AGG | - | chr4.1:72294298-72294317 | MS.gene76662:CDS | 30.0% | |
| TATTGTGTTAGGCCTAATAA+TGG | - | chr4.1:72292235-72292254 | MS.gene76662:intron | 30.0% | |
| TTCCTGAGAAATATTGTGTT+AGG | - | chr4.1:72292224-72292243 | MS.gene76662:intron | 30.0% | |
| TTGAAGCCCAAATAGAAAAA+TGG | + | chr4.1:72293897-72293916 | None:intergenic | 30.0% | |
| ! | ATAGAATATTAGGAAGCGTA+TGG | - | chr4.1:72294308-72294327 | MS.gene76662:CDS | 30.0% |
| ! | ATTCTTTTGTAACTGATCCA+TGG | - | chr4.1:72293854-72293873 | MS.gene76662:intron | 30.0% |
| ! | TAGTTTATGTTTGCTGAAAG+TGG | - | chr4.1:72292679-72292698 | MS.gene76662:intron | 30.0% |
| ! | TTTATCCTCCAATGTTTTCA+TGG | - | chr4.1:72292894-72292913 | MS.gene76662:CDS | 30.0% |
| !! | GGTAACACCATTTTTCTATT+TGG | - | chr4.1:72293887-72293906 | MS.gene76662:CDS | 30.0% |
| !! | TGATAATTATCTGGCTTTCA+AGG | - | chr4.1:72292100-72292119 | MS.gene76662:intron | 30.0% |
| !! | TTTTCAAGATTCTGGATACA+AGG | - | chr4.1:72293200-72293219 | MS.gene76662:intron | 30.0% |
| !!! | TTTTGAAGTGATATCTTCTG+GGG | + | chr4.1:72293096-72293115 | None:intergenic | 30.0% |
| AGATACACACACATTATGTG+TGG | - | chr4.1:72292564-72292583 | MS.gene76662:intron | 35.0% | |
| AGGTCTACTTGTGATATTAC+AGG | - | chr4.1:72292271-72292290 | MS.gene76662:intron | 35.0% | |
| ATTGAAGAGGCTTAGTTACA+TGG | + | chr4.1:72291909-72291928 | None:intergenic | 35.0% | |
| CAATGTTAGGGAACATCATA+TGG | + | chr4.1:72294014-72294033 | None:intergenic | 35.0% | |
| GTAATATCACAAGTAGACCT+AGG | + | chr4.1:72292271-72292290 | None:intergenic | 35.0% | |
| TAAAAAGCTTCAGCAAGAAC+TGG | - | chr4.1:72293565-72293584 | MS.gene76662:intron | 35.0% | |
| TACAATGCAAGCTCAAAAGA+AGG | - | chr4.1:72293004-72293023 | MS.gene76662:intron | 35.0% | |
| TTATCGATGCAATGCATGTT+AGG | + | chr4.1:72293035-72293054 | None:intergenic | 35.0% | |
| TTGGTTACAACCAGAACATT+TGG | - | chr4.1:72293946-72293965 | MS.gene76662:CDS | 35.0% | |
| ! | AAATGTTCTGGTTGTAACCA+AGG | + | chr4.1:72293947-72293966 | None:intergenic | 35.0% |
| ! | GAACAACTTTTGAATGCTCA+AGG | + | chr4.1:72292495-72292514 | None:intergenic | 35.0% |
| !! | TATCAGACTTGTTAGACATC+TGG | + | chr4.1:72292085-72292104 | None:intergenic | 35.0% |
| !! | TGTTACCATTGATAATGCCA+TGG | + | chr4.1:72293874-72293893 | None:intergenic | 35.0% |
| !! | TTGGTTTTTGGGAATTGAAG+AGG | + | chr4.1:72291922-72291941 | None:intergenic | 35.0% |
| !! | TTTTGAATGCTCAAGGTATC+AGG | + | chr4.1:72292488-72292507 | None:intergenic | 35.0% |
| !!! | TTTTTTGTCAAGTAGCCTAG+TGG | - | chr4.1:72292539-72292558 | MS.gene76662:intron | 35.0% |
| ACATTATGTGTGGAGAAGTG+TGG | - | chr4.1:72292574-72292593 | MS.gene76662:intron | 40.0% | |
| CTGATCCATGGCATTATCAA+TGG | - | chr4.1:72293866-72293885 | MS.gene76662:intron | 40.0% | |
| GGCAACACAACTCCATTATT+AGG | + | chr4.1:72292250-72292269 | None:intergenic | 40.0% | |
| GGCCTAACACAATATTTCTC+AGG | + | chr4.1:72292229-72292248 | None:intergenic | 40.0% | |
| TAGAAAAGGTTGCAACTTGC+AGG | - | chr4.1:72292189-72292208 | MS.gene76662:intron | 40.0% | |
| TCAAATTCTGATGCTTGAGC+TGG | + | chr4.1:72293282-72293301 | None:intergenic | 40.0% | |
| ! | AGCTCAATTGATAGCTACCA+GGG | + | chr4.1:72292636-72292655 | None:intergenic | 40.0% |
| ! | ATAATGGAGTTGTGTTGCCT+AGG | - | chr4.1:72292251-72292270 | MS.gene76662:intron | 40.0% |
| ! | ATGGAAAGTGTAGCTCTTGA+GGG | + | chr4.1:72291890-72291909 | None:intergenic | 40.0% |
| ! | GCGTGCAGATAAGTTGAATA+AGG | + | chr4.1:72293805-72293824 | None:intergenic | 40.0% |
| ! | TACCAGGGATAATTTGTGCA+GGG | + | chr4.1:72292621-72292640 | None:intergenic | 40.0% |
| ! | TAGCTCAATTGATAGCTACC+AGG | + | chr4.1:72292637-72292656 | None:intergenic | 40.0% |
| TCGATGCAATGCATGTTAGG+TGG | + | chr4.1:72293032-72293051 | None:intergenic | 45.0% | |
| TCGTGCTCTTGTATGCAAGA+GGG | + | chr4.1:72292322-72292341 | None:intergenic | 45.0% | |
| TGTGTGTGTATCTAGCCACT+AGG | + | chr4.1:72292557-72292576 | None:intergenic | 45.0% | |
| TTCGTGCTCTTGTATGCAAG+AGG | + | chr4.1:72292323-72292342 | None:intergenic | 45.0% | |
| ! | ACCAGGGATAATTTGTGCAG+GGG | + | chr4.1:72292620-72292639 | None:intergenic | 45.0% |
| ! | CATGGAAAGTGTAGCTCTTG+AGG | + | chr4.1:72291891-72291910 | None:intergenic | 45.0% |
| ! | CTACCAGGGATAATTTGTGC+AGG | + | chr4.1:72292622-72292641 | None:intergenic | 45.0% |
| !!! | TTAATAATTTGAAATTTTTT+GGG | - | chr4.1:72294138-72294157 | MS.gene76662:intron | 5.0% |
| !!! | TTTAATAATTTGAAATTTTT+TGG | - | chr4.1:72294137-72294156 | MS.gene76662:intron | 5.0% |
| CAAAGCATAGTCGCAAAGCC+TGG | - | chr4.1:72293065-72293084 | MS.gene76662:CDS | 50.0% | |
| CTTGTATGCAAGAGGGAGAG+TGG | + | chr4.1:72292315-72292334 | None:intergenic | 50.0% | |
| TCTGATGCTTGAGCTGGTGA+CGG | + | chr4.1:72293276-72293295 | None:intergenic | 50.0% | |
| ! | GATAATTTGTGCAGGGGCCA+GGG | + | chr4.1:72292614-72292633 | None:intergenic | 50.0% |
| ! | GCTCTTGAGGGTGTATCTGA+AGG | + | chr4.1:72291878-72291897 | None:intergenic | 50.0% |
| ! | GTGTGGAGAAGTGTGGAATC+CGG | - | chr4.1:72292581-72292600 | MS.gene76662:intron | 50.0% |
| ! | TGTGGAGAAGTGTGGAATCC+GGG | - | chr4.1:72292582-72292601 | MS.gene76662:intron | 50.0% |
| !! | ATATCTTCTGGGGTTGCACC+AGG | + | chr4.1:72293086-72293105 | None:intergenic | 50.0% |
| GCCCCTGCACAAATTATCCC+TGG | - | chr4.1:72292616-72292635 | MS.gene76662:CDS | 55.0% | |
| ! | GGATAATTTGTGCAGGGGCC+AGG | + | chr4.1:72292615-72292634 | None:intergenic | 55.0% |
| ! | GTGGAGAAGTGTGGAATCCG+GGG | - | chr4.1:72292583-72292602 | MS.gene76662:intron | 55.0% |
| !! | ATGCTTGAGCTGGTGACGGT+GGG | + | chr4.1:72293272-72293291 | None:intergenic | 55.0% |
| !! | GATGCTTGAGCTGGTGACGG+TGG | + | chr4.1:72293273-72293292 | None:intergenic | 60.0% |
| !! | TGAGCTGGTGACGGTGGGTT+AGG | + | chr4.1:72293267-72293286 | None:intergenic | 60.0% |
| TGGAATCCGGGGTTCGACCC+TGG | - | chr4.1:72292594-72292613 | MS.gene76662:CDS | 65.0% | |
| !! | GCTGGTGACGGTGGGTTAGG+AGG | + | chr4.1:72293264-72293283 | None:intergenic | 65.0% |
| !! | GGTGACGGTGGGTTAGGAGG+AGG | + | chr4.1:72293261-72293280 | None:intergenic | 65.0% |
| CAGGGGCCAGGGTCGAACCC+CGG | + | chr4.1:72292603-72292622 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 72291822 | 72294356 | 72291822 | ID=MS.gene76662 |
| chr4.1 | mRNA | 72291822 | 72294356 | 72291822 | ID=MS.gene76662.t1;Parent=MS.gene76662 |
| chr4.1 | exon | 72294269 | 72294356 | 72294269 | ID=MS.gene76662.t1.exon1;Parent=MS.gene76662.t1 |
| chr4.1 | CDS | 72294269 | 72294356 | 72294269 | ID=cds.MS.gene76662.t1;Parent=MS.gene76662.t1 |
| chr4.1 | exon | 72294057 | 72294127 | 72294057 | ID=MS.gene76662.t1.exon2;Parent=MS.gene76662.t1 |
| chr4.1 | CDS | 72294057 | 72294127 | 72294057 | ID=cds.MS.gene76662.t1;Parent=MS.gene76662.t1 |
| chr4.1 | exon | 72293886 | 72293967 | 72293886 | ID=MS.gene76662.t1.exon3;Parent=MS.gene76662.t1 |
| chr4.1 | CDS | 72293886 | 72293967 | 72293886 | ID=cds.MS.gene76662.t1;Parent=MS.gene76662.t1 |
| chr4.1 | exon | 72293060 | 72293175 | 72293060 | ID=MS.gene76662.t1.exon4;Parent=MS.gene76662.t1 |
| chr4.1 | CDS | 72293060 | 72293175 | 72293060 | ID=cds.MS.gene76662.t1;Parent=MS.gene76662.t1 |
| chr4.1 | exon | 72292861 | 72292980 | 72292861 | ID=MS.gene76662.t1.exon5;Parent=MS.gene76662.t1 |
| chr4.1 | CDS | 72292861 | 72292980 | 72292861 | ID=cds.MS.gene76662.t1;Parent=MS.gene76662.t1 |
| chr4.1 | exon | 72292592 | 72292669 | 72292592 | ID=MS.gene76662.t1.exon6;Parent=MS.gene76662.t1 |
| chr4.1 | CDS | 72292592 | 72292669 | 72292592 | ID=cds.MS.gene76662.t1;Parent=MS.gene76662.t1 |
| chr4.1 | exon | 72291822 | 72291866 | 72291822 | ID=MS.gene76662.t1.exon7;Parent=MS.gene76662.t1 |
| chr4.1 | CDS | 72291822 | 72291866 | 72291822 | ID=cds.MS.gene76662.t1;Parent=MS.gene76662.t1 |
| Gene Sequence |
| Protein sequence |
