Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76830.t1 | XP_013470006.1 | 98.6 | 213 | 3 | 0 | 1 | 213 | 1 | 213 | 2.10E-108 | 401.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76830.t1 | O64628 | 77.4 | 208 | 46 | 1 | 6 | 213 | 5 | 211 | 3.6e-85 | 315.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76830.t1 | B7FMC0 | 98.6 | 213 | 3 | 0 | 1 | 213 | 1 | 213 | 1.5e-108 | 401.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049411 | MS.gene76830 | 0.800575 | 1.35E-48 | -1.69E-46 |
MS.gene049821 | MS.gene76830 | 0.811839 | 5.73E-51 | -1.69E-46 |
MS.gene050752 | MS.gene76830 | 0.848751 | 5.02E-60 | -1.69E-46 |
MS.gene050838 | MS.gene76830 | 0.840927 | 6.47E-58 | -1.69E-46 |
MS.gene050955 | MS.gene76830 | 0.8159 | 7.29E-52 | -1.69E-46 |
MS.gene051003 | MS.gene76830 | 0.835839 | 1.33E-56 | -1.69E-46 |
MS.gene051234 | MS.gene76830 | 0.81966 | 1.03E-52 | -1.69E-46 |
MS.gene051343 | MS.gene76830 | 0.83431 | 3.23E-56 | -1.69E-46 |
MS.gene051902 | MS.gene76830 | 0.835696 | 1.44E-56 | -1.69E-46 |
MS.gene052947 | MS.gene76830 | 0.828269 | 9.87E-55 | -1.69E-46 |
MS.gene053058 | MS.gene76830 | 0.823353 | 1.45E-53 | -1.69E-46 |
MS.gene053109 | MS.gene76830 | 0.806633 | 7.48E-50 | -1.69E-46 |
MS.gene053581 | MS.gene76830 | 0.824882 | 6.35E-54 | -1.69E-46 |
MS.gene054403 | MS.gene76830 | 0.850917 | 1.25E-60 | -1.69E-46 |
MS.gene055424 | MS.gene76830 | 0.801433 | 9.03E-49 | -1.69E-46 |
MS.gene056181 | MS.gene76830 | 0.812181 | 4.83E-51 | -1.69E-46 |
MS.gene057694 | MS.gene76830 | 0.810762 | 9.81E-51 | -1.69E-46 |
MS.gene057705 | MS.gene76830 | 0.813565 | 2.40E-51 | -1.69E-46 |
MS.gene05781 | MS.gene76830 | 0.818515 | 1.88E-52 | -1.69E-46 |
MS.gene058261 | MS.gene76830 | 0.812382 | 4.36E-51 | -1.69E-46 |
MS.gene058852 | MS.gene76830 | 0.803994 | 2.67E-49 | -1.69E-46 |
MS.gene059146 | MS.gene76830 | 0.803123 | 4.05E-49 | -1.69E-46 |
MS.gene059227 | MS.gene76830 | 0.807194 | 5.70E-50 | -1.69E-46 |
MS.gene061006 | MS.gene76830 | 0.801555 | 8.52E-49 | -1.69E-46 |
MS.gene061100 | MS.gene76830 | 0.840783 | 7.06E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene060292 | MS.gene76830 | PPI |
MS.gene71640 | MS.gene76830 | PPI |
MS.gene91284 | MS.gene76830 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76830.t1 | MTR_1g106955 | 98.592 | 213 | 3 | 0 | 1 | 213 | 1 | 213 | 1.35e-155 | 429 |
MS.gene76830.t1 | MTR_8g076890 | 42.038 | 157 | 89 | 2 | 25 | 180 | 105 | 260 | 2.49e-38 | 134 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76830.t1 | AT2G18990 | 77.404 | 208 | 46 | 1 | 6 | 213 | 5 | 211 | 2.86e-119 | 337 |
MS.gene76830.t1 | AT3G25580 | 76.923 | 208 | 46 | 2 | 6 | 213 | 5 | 210 | 2.12e-118 | 335 |
MS.gene76830.t1 | AT3G25580 | 76.585 | 205 | 46 | 2 | 9 | 213 | 3 | 205 | 1.90e-116 | 330 |
MS.gene76830.t1 | AT5G66410 | 37.073 | 205 | 122 | 4 | 7 | 209 | 28 | 227 | 7.32e-39 | 134 |
MS.gene76830.t1 | AT3G50960 | 42.667 | 150 | 84 | 2 | 23 | 171 | 40 | 188 | 2.83e-37 | 130 |
MS.gene76830.t1 | AT3G50960 | 42.667 | 150 | 84 | 2 | 23 | 171 | 40 | 188 | 2.83e-37 | 130 |
Find 45 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGACAAGCATTTAAGTATTT+TGG | 0.171906 | 1.1:+76684600 | MS.gene76830:CDS |
GTTGCAGCCTCCTTTCTCTT+AGG | 0.207376 | 1.1:-76683936 | None:intergenic |
TGACTTTAGCACCGAGGTTT+TGG | 0.292143 | 1.1:+76684913 | MS.gene76830:CDS |
GTCATTTCTTCCGCGAAAAT+TGG | 0.299383 | 1.1:+76684079 | MS.gene76830:CDS |
CGAAATTGTGCGAACCTTGC+AGG | 0.328390 | 1.1:-76684103 | None:intergenic |
TTGCAGCCTCCTTTCTCTTA+GGG | 0.338559 | 1.1:-76683935 | None:intergenic |
GCTCTGCCGAACACTTCTTT+TGG | 0.354451 | 1.1:-76685014 | None:intergenic |
TCAATACACCGTGCAAGGTC+CGG | 0.384757 | 1.1:+76684983 | MS.gene76830:CDS |
GCTGCAACAAATGAAGAAAA+TGG | 0.402598 | 1.1:+76683951 | MS.gene76830:CDS |
CTTGATTCTCGATCACCTCT+TGG | 0.414878 | 1.1:-76683828 | None:intergenic |
CAATACACCGTGCAAGGTCC+GGG | 0.429480 | 1.1:+76684984 | MS.gene76830:CDS |
TTTGCGCCCCGGACCTTGCA+CGG | 0.490890 | 1.1:-76684991 | None:intergenic |
CGAAGCAGCATGTTGAGACT+CGG | 0.494218 | 1.1:+76684623 | MS.gene76830:CDS |
GTCTTTCTCTGACGGAATCT+CGG | 0.495284 | 1.1:-76684019 | None:intergenic |
CGCAAACCAAAAGAAGTGTT+CGG | 0.506657 | 1.1:+76685008 | MS.gene76830:CDS |
CGGTGTAATCTCCGTGTCCG+AGG | 0.513907 | 1.1:-76683999 | None:intergenic |
CGTCATCGTCGAGACGTTCA+AGG | 0.517999 | 1.1:-76683903 | None:intergenic |
ATCTTGAAGCCCTAAGAGAA+AGG | 0.527404 | 1.1:+76683926 | MS.gene76830:CDS |
TTCTTTATGAGAGCAATAGT+AGG | 0.546329 | 1.1:-76684709 | None:intergenic |
CCGCGAAAATTGGCCCTGCA+AGG | 0.557879 | 1.1:+76684089 | MS.gene76830:CDS |
TACCAAAGTGGATGATTATG+TGG | 0.558275 | 1.1:+76684732 | MS.gene76830:CDS |
GAAATTGTGCGAACCTTGCA+GGG | 0.562815 | 1.1:-76684102 | None:intergenic |
GTCATCGTCGAGACGTTCAA+GGG | 0.565214 | 1.1:-76683902 | None:intergenic |
GAGAAGAAGTCTTTCTCTGA+CGG | 0.577836 | 1.1:-76684027 | None:intergenic |
AATCGTCAATACACCGTGCA+AGG | 0.582115 | 1.1:+76684978 | MS.gene76830:CDS |
CGTTGGATCTCCCTCGGACA+CGG | 0.582223 | 1.1:+76683988 | MS.gene76830:CDS |
TACCACATAATCATCCACTT+TGG | 0.582640 | 1.1:-76684734 | None:intergenic |
CGTAGCCGTTGGATCTCCCT+CGG | 0.582964 | 1.1:+76683982 | MS.gene76830:CDS |
GACGGTGGCTCAAGCAGTCG+AGG | 0.591671 | 1.1:+76683855 | MS.gene76830:CDS |
TGGCGGAGAAGCGTAGCCGT+TGG | 0.601854 | 1.1:+76683971 | MS.gene76830:CDS |
CAATCTTTCTTCCAAAACCT+CGG | 0.602383 | 1.1:-76684924 | None:intergenic |
ACGATCACTTGCTTTAACGA+CGG | 0.607682 | 1.1:-76684049 | None:intergenic |
GGTGTAATCTCCGTGTCCGA+GGG | 0.608291 | 1.1:-76683998 | None:intergenic |
TACAAGTTACTCAGAATCTG+AGG | 0.610014 | 1.1:-76685050 | None:intergenic |
CGTGTCCGAGGGAGATCCAA+CGG | 0.633581 | 1.1:-76683987 | None:intergenic |
AATACACCGTGCAAGGTCCG+GGG | 0.653754 | 1.1:+76684985 | MS.gene76830:CDS |
GATCGAGAATCAAGTACTGA+CGG | 0.657827 | 1.1:+76683837 | MS.gene76830:CDS |
TCTCATAAAGAATACCAAAG+TGG | 0.658073 | 1.1:+76684720 | MS.gene76830:CDS |
TCGGTTTGTGAAAATAAATG+CGG | 0.667614 | 1.1:+76684642 | MS.gene76830:CDS |
TTGAAGCCCTAAGAGAAAGG+AGG | 0.672465 | 1.1:+76683929 | MS.gene76830:CDS |
TACTGATGACTTTAGCACCG+AGG | 0.705317 | 1.1:+76684907 | MS.gene76830:CDS |
GCAACAAATGAAGAAAATGG+CGG | 0.709368 | 1.1:+76683954 | MS.gene76830:CDS |
AAGTGTTCGGCAGAGCACAA+CGG | 0.717985 | 1.1:+76685021 | MS.gene76830:CDS |
GGACAAAGGAAAGATCCAAG+AGG | 0.724397 | 1.1:+76683813 | MS.gene76830:CDS |
CGAGAATCAAGTACTGACGG+TGG | 0.724611 | 1.1:+76683840 | MS.gene76830:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAACTTTATAAAAATATTAT+TGG | + | chr1.1:76684355-76684374 | MS.gene76830:intron | 10.0% |
!!! | AAGAATTTTAATTTAAACGT+AGG | + | chr1.1:76684333-76684352 | MS.gene76830:intron | 15.0% |
!! | ACATGTGATTACATAATTAT+CGG | + | chr1.1:76684219-76684238 | MS.gene76830:intron | 20.0% |
!! | TAGAATTATCTGTTTATCAT+TGG | + | chr1.1:76684450-76684469 | MS.gene76830:intron | 20.0% |
!! | TATTGACATGAATTCTATAT+TGG | + | chr1.1:76684796-76684815 | MS.gene76830:intron | 20.0% |
! | AATTATCTGTTTATCATTGG+AGG | + | chr1.1:76684453-76684472 | MS.gene76830:intron | 25.0% |
! | AATTATGTAATCACATGTGT+AGG | - | chr1.1:76684217-76684236 | None:intergenic | 25.0% |
! | ATATAAAAACTGTAAGTCTG+CGG | - | chr1.1:76684524-76684543 | None:intergenic | 25.0% |
! | ATTATCTGTTTATCATTGGA+GGG | + | chr1.1:76684454-76684473 | MS.gene76830:intron | 25.0% |
! | TACTAACATCAAGATGATAA+TGG | + | chr1.1:76684849-76684868 | MS.gene76830:intron | 25.0% |
!!! | ATGATAATGGTATGTGTTTT+AGG | + | chr1.1:76684862-76684881 | MS.gene76830:intron | 25.0% |
ACATGAATTCTATATTGGAC+AGG | + | chr1.1:76684801-76684820 | MS.gene76830:intron | 30.0% | |
ATTATGTGGTATGTGCTTAA+AGG | + | chr1.1:76684746-76684765 | MS.gene76830:intron | 30.0% | |
CATGAATTCTATATTGGACA+GGG | + | chr1.1:76684802-76684821 | MS.gene76830:intron | 30.0% | |
CGGAATTCAAATTCAAATTG+TGG | - | chr1.1:76684504-76684523 | None:intergenic | 30.0% | |
TCTCATAAAGAATACCAAAG+TGG | + | chr1.1:76684720-76684739 | MS.gene76830:CDS | 30.0% | |
TGATTACATAATTATCGGTG+TGG | + | chr1.1:76684224-76684243 | MS.gene76830:intron | 30.0% | |
TTCTTTATGAGAGCAATAGT+AGG | - | chr1.1:76684712-76684731 | None:intergenic | 30.0% | |
! | GGACAAGCATTTAAGTATTT+TGG | + | chr1.1:76684600-76684619 | MS.gene76830:CDS | 30.0% |
! | TAAAGCTCAAGTCATCTTTT+TGG | + | chr1.1:76684949-76684968 | MS.gene76830:CDS | 30.0% |
! | TATTTTCTTTCGCTGAAATG+AGG | + | chr1.1:76684541-76684560 | MS.gene76830:intron | 30.0% |
! | TCGGTTTGTGAAAATAAATG+CGG | + | chr1.1:76684642-76684661 | MS.gene76830:CDS | 30.0% |
!! | ATAATGGTATGTGTTTTAGG+TGG | + | chr1.1:76684865-76684884 | MS.gene76830:intron | 30.0% |
!! | TAATGGTATGTGTTTTAGGT+GGG | + | chr1.1:76684866-76684885 | MS.gene76830:intron | 30.0% |
ATATTATTGGCAGTGCATAC+TGG | + | chr1.1:76684368-76684387 | MS.gene76830:intron | 35.0% | |
CAATCTTTCTTCCAAAACCT+CGG | - | chr1.1:76684927-76684946 | None:intergenic | 35.0% | |
GCAACAAATGAAGAAAATGG+CGG | + | chr1.1:76683954-76683973 | MS.gene76830:CDS | 35.0% | |
GCTGCAACAAATGAAGAAAA+TGG | + | chr1.1:76683951-76683970 | MS.gene76830:CDS | 35.0% | |
TACCAAAGTGGATGATTATG+TGG | + | chr1.1:76684732-76684751 | MS.gene76830:CDS | 35.0% | |
TACCACATAATCATCCACTT+TGG | - | chr1.1:76684737-76684756 | None:intergenic | 35.0% | |
TTGAGCTTCTCAGCTAAAAA+TGG | - | chr1.1:76684676-76684695 | None:intergenic | 35.0% | |
ACGATCACTTGCTTTAACGA+CGG | - | chr1.1:76684052-76684071 | None:intergenic | 40.0% | |
ATCTTGAAGCCCTAAGAGAA+AGG | + | chr1.1:76683926-76683945 | MS.gene76830:CDS | 40.0% | |
GAGAAGAAGTCTTTCTCTGA+CGG | - | chr1.1:76684030-76684049 | None:intergenic | 40.0% | |
GTAATCACATGTGTAGGTGT+CGG | - | chr1.1:76684211-76684230 | None:intergenic | 40.0% | |
GTCATTTCTTCCGCGAAAAT+TGG | + | chr1.1:76684079-76684098 | MS.gene76830:CDS | 40.0% | |
! | AGCTCAAGTCATCTTTTTGG+AGG | + | chr1.1:76684952-76684971 | MS.gene76830:CDS | 40.0% |
! | GCTCAAGTCATCTTTTTGGA+GGG | + | chr1.1:76684953-76684972 | MS.gene76830:CDS | 40.0% |
! | TGCATTCAGTTTGCTTAGCT+TGG | + | chr1.1:76684305-76684324 | MS.gene76830:intron | 40.0% |
!! | CGCAAACCAAAAGAAGTGTT+CGG | + | chr1.1:76685008-76685027 | MS.gene76830:CDS | 40.0% |
!! | GATCGAGAATCAAGTACTGA+CGG | + | chr1.1:76683837-76683856 | MS.gene76830:CDS | 40.0% |
!! | TAGGTGGGTTTTGATGAACT+TGG | + | chr1.1:76684881-76684900 | MS.gene76830:intron | 40.0% |
!!! | CGAGGTTTTGGAAGAAAGAT+TGG | + | chr1.1:76684925-76684944 | MS.gene76830:CDS | 40.0% |
AATCGTCAATACACCGTGCA+AGG | + | chr1.1:76684978-76684997 | MS.gene76830:CDS | 45.0% | |
CACAGTTCATTCACAGGTTG+TGG | + | chr1.1:76684579-76684598 | MS.gene76830:intron | 45.0% | |
CTTGATTCTCGATCACCTCT+TGG | - | chr1.1:76683831-76683850 | None:intergenic | 45.0% | |
GAAATTGTGCGAACCTTGCA+GGG | - | chr1.1:76684105-76684124 | None:intergenic | 45.0% | |
GGACAAAGGAAAGATCCAAG+AGG | + | chr1.1:76683813-76683832 | MS.gene76830:CDS | 45.0% | |
GTCTTTCTCTGACGGAATCT+CGG | - | chr1.1:76684022-76684041 | None:intergenic | 45.0% | |
TACTGATGACTTTAGCACCG+AGG | + | chr1.1:76684907-76684926 | MS.gene76830:CDS | 45.0% | |
TGTGCTCACAGTTCATTCAC+AGG | + | chr1.1:76684573-76684592 | MS.gene76830:intron | 45.0% | |
TTGAAGCCCTAAGAGAAAGG+AGG | + | chr1.1:76683929-76683948 | MS.gene76830:CDS | 45.0% | |
TTGCAGCCTCCTTTCTCTTA+GGG | - | chr1.1:76683938-76683957 | None:intergenic | 45.0% | |
!! | GTGGGTTTTGATGAACTTGG+TGG | + | chr1.1:76684884-76684903 | MS.gene76830:CDS | 45.0% |
!! | TGACTTTAGCACCGAGGTTT+TGG | + | chr1.1:76684913-76684932 | MS.gene76830:CDS | 45.0% |
AAGTGTTCGGCAGAGCACAA+CGG | + | chr1.1:76685021-76685040 | MS.gene76830:CDS | 50.0% | |
CGAAATTGTGCGAACCTTGC+AGG | - | chr1.1:76684106-76684125 | None:intergenic | 50.0% | |
CGAAGCAGCATGTTGAGACT+CGG | + | chr1.1:76684623-76684642 | MS.gene76830:CDS | 50.0% | |
CGGTGTGGATGTGTAGTGTT+AGG | + | chr1.1:76684239-76684258 | MS.gene76830:intron | 50.0% | |
GTCATCGTCGAGACGTTCAA+GGG | - | chr1.1:76683905-76683924 | None:intergenic | 50.0% | |
GTTGCAGCCTCCTTTCTCTT+AGG | - | chr1.1:76683939-76683958 | None:intergenic | 50.0% | |
TCAATACACCGTGCAAGGTC+CGG | + | chr1.1:76684983-76685002 | MS.gene76830:CDS | 50.0% | |
! | GCTCTGCCGAACACTTCTTT+TGG | - | chr1.1:76685017-76685036 | None:intergenic | 50.0% |
!! | CGAGAATCAAGTACTGACGG+TGG | + | chr1.1:76683840-76683859 | MS.gene76830:CDS | 50.0% |
!!! | ACTTCTTTTGGTTTGCGCCC+CGG | - | chr1.1:76685005-76685024 | None:intergenic | 50.0% |
AATACACCGTGCAAGGTCCG+GGG | + | chr1.1:76684985-76685004 | MS.gene76830:CDS | 55.0% | |
CAATACACCGTGCAAGGTCC+GGG | + | chr1.1:76684984-76685003 | MS.gene76830:CDS | 55.0% | |
CGTCATCGTCGAGACGTTCA+AGG | - | chr1.1:76683906-76683925 | None:intergenic | 55.0% | |
GGTGTAATCTCCGTGTCCGA+GGG | - | chr1.1:76684001-76684020 | None:intergenic | 55.0% | |
! | CCTTGCAGGGCCAATTTTCG+CGG | - | chr1.1:76684092-76684111 | None:intergenic | 55.0% |
CCGCGAAAATTGGCCCTGCA+AGG | + | chr1.1:76684089-76684108 | MS.gene76830:CDS | 60.0% | |
CGGTGTAATCTCCGTGTCCG+AGG | - | chr1.1:76684002-76684021 | None:intergenic | 60.0% | |
CGTAGCCGTTGGATCTCCCT+CGG | + | chr1.1:76683982-76684001 | MS.gene76830:CDS | 60.0% | |
CGTGTCCGAGGGAGATCCAA+CGG | - | chr1.1:76683990-76684009 | None:intergenic | 60.0% | |
CGTTGGATCTCCCTCGGACA+CGG | + | chr1.1:76683988-76684007 | MS.gene76830:CDS | 60.0% | |
GACGGTGGCTCAAGCAGTCG+AGG | + | chr1.1:76683855-76683874 | MS.gene76830:CDS | 65.0% | |
TTTGCGCCCCGGACCTTGCA+CGG | - | chr1.1:76684994-76685013 | None:intergenic | 65.0% | |
! | TGGCGGAGAAGCGTAGCCGT+TGG | + | chr1.1:76683971-76683990 | MS.gene76830:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 76683811 | 76685066 | 76683811 | ID=MS.gene76830 |
chr1.1 | mRNA | 76683811 | 76685066 | 76683811 | ID=MS.gene76830.t1;Parent=MS.gene76830 |
chr1.1 | exon | 76683811 | 76684110 | 76683811 | ID=MS.gene76830.t1.exon1;Parent=MS.gene76830.t1 |
chr1.1 | CDS | 76683811 | 76684110 | 76683811 | ID=cds.MS.gene76830.t1;Parent=MS.gene76830.t1 |
chr1.1 | exon | 76684595 | 76684753 | 76684595 | ID=MS.gene76830.t1.exon2;Parent=MS.gene76830.t1 |
chr1.1 | CDS | 76684595 | 76684753 | 76684595 | ID=cds.MS.gene76830.t1;Parent=MS.gene76830.t1 |
chr1.1 | exon | 76684884 | 76685066 | 76684884 | ID=MS.gene76830.t1.exon3;Parent=MS.gene76830.t1 |
chr1.1 | CDS | 76684884 | 76685066 | 76684884 | ID=cds.MS.gene76830.t1;Parent=MS.gene76830.t1 |
Gene Sequence |
Protein sequence |