Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77649.t1 | AFK38998.1 | 97.3 | 74 | 2 | 0 | 80 | 153 | 80 | 153 | 2.70E-33 | 151.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77649.t1 | A0A1S4AX27 | 71.6 | 74 | 21 | 0 | 80 | 153 | 81 | 154 | 3.5e-26 | 119.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77649.t1 | I3SFF6 | 97.3 | 74 | 2 | 0 | 80 | 153 | 80 | 153 | 1.9e-33 | 151.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049786 | MS.gene77649 | 0.810322 | 1.22E-50 | -1.69E-46 |
| MS.gene050317 | MS.gene77649 | 0.824432 | 8.10E-54 | -1.69E-46 |
| MS.gene051245 | MS.gene77649 | 0.818506 | 1.89E-52 | -1.69E-46 |
| MS.gene052434 | MS.gene77649 | 0.819593 | 1.07E-52 | -1.69E-46 |
| MS.gene053381 | MS.gene77649 | 0.847708 | 9.75E-60 | -1.69E-46 |
| MS.gene055603 | MS.gene77649 | 0.808317 | 3.29E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene77649 | 0.809029 | 2.32E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene77649 | 0.812643 | 3.82E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene77649 | 0.806319 | 8.72E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene77649 | 0.806266 | 8.94E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene77649 | 0.804032 | 2.62E-49 | -1.69E-46 |
| MS.gene058646 | MS.gene77649 | 0.810122 | 1.35E-50 | -1.69E-46 |
| MS.gene058654 | MS.gene77649 | 0.823976 | 1.04E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene77649 | 0.80985 | 1.54E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene77649 | 0.815811 | 7.64E-52 | -1.69E-46 |
| MS.gene059360 | MS.gene77649 | 0.812322 | 4.49E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene77649 | 0.800869 | 1.18E-48 | -1.69E-46 |
| MS.gene06011 | MS.gene77649 | 0.820315 | 7.32E-53 | -1.69E-46 |
| MS.gene060586 | MS.gene77649 | 0.800228 | 1.59E-48 | -1.69E-46 |
| MS.gene060870 | MS.gene77649 | 0.803873 | 2.83E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77649.t1 | MTR_0167s0040 | 81.982 | 111 | 19 | 1 | 1 | 111 | 1 | 110 | 5.23e-39 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77649.t1 | AT1G79200 | 70.270 | 74 | 22 | 0 | 80 | 153 | 85 | 158 | 1.35e-34 | 119 |
Find 20 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCTCGCACAGCCCATAAA+TGG | 0.229703 | 2.3:+29609982 | MS.gene77649:CDS |
| GGTAGCAAACTCATTATTCT+TGG | 0.322349 | 2.3:-29609826 | None:intergenic |
| TTTGTCAAAGCTTGGAATAA+AGG | 0.336053 | 2.3:+29609921 | MS.gene77649:CDS |
| AGGAAAAGAAGAGCAGGAAG+AGG | 0.371812 | 2.3:+29606507 | MS.gene77649:CDS |
| TCCAGAGATAAATCTGATAA+AGG | 0.384641 | 2.3:+29606563 | MS.gene77649:CDS |
| ACCTTTATCAGATTTATCTC+TGG | 0.407853 | 2.3:-29606564 | None:intergenic |
| TTGCAGAATTTGTCAAAGCT+TGG | 0.436101 | 2.3:+29609913 | MS.gene77649:CDS |
| GGAAAAGAAAGAGAAAAGAA+AGG | 0.473653 | 2.3:+29606529 | MS.gene77649:CDS |
| ATGATGAGGAAAAGAAGAGC+AGG | 0.479753 | 2.3:+29606501 | MS.gene77649:CDS |
| GGAAAAGAAGAGCAGGAAGA+GGG | 0.504628 | 2.3:+29606508 | MS.gene77649:CDS |
| ATTCTTCTCTTCTTTCAGCC+AGG | 0.510461 | 2.3:-29609847 | None:intergenic |
| CTTGAATCGAATTACTATGA+AGG | 0.515517 | 2.3:+29609948 | MS.gene77649:CDS |
| AGAATAATGAGTTTGCTACC+TGG | 0.553697 | 2.3:+29609829 | MS.gene77649:CDS |
| CAGATGAGAAGAAAAGCAAG+AGG | 0.577750 | 2.3:+29606459 | MS.gene77649:intron |
| TTCCATTTATGGGCTGTGCG+AGG | 0.589094 | 2.3:-29609984 | None:intergenic |
| CTTGGCAAAATAGTCATCAC+CGG | 0.597107 | 2.3:-29609808 | None:intergenic |
| CCTTCAGATTCGGATTGCGA+AGG | 0.611110 | 2.3:-29606195 | None:intergenic |
| AACTGTAGATGATGATGATG+AGG | 0.616853 | 2.3:+29606487 | MS.gene77649:CDS |
| CAGCAAAAGTGAAAGAAACA+TGG | 0.625791 | 2.3:+29609030 | MS.gene77649:CDS |
| CCTTCGCAATCCGAATCTGA+AGG | 0.628237 | 2.3:+29606195 | MS.gene77649:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATTTCCAAAATTAA+TGG | + | chr2.3:29607620-29607639 | MS.gene77649:intron | 10.0% |
| !! | AATATATTTCCAAAATTAAT+GGG | + | chr2.3:29607621-29607640 | MS.gene77649:intron | 10.0% |
| !! | ATATATATATAAAAGATTCA+AGG | - | chr2.3:29607363-29607382 | None:intergenic | 10.0% |
| !! | AAATCCAAACATATTAAAAA+AGG | + | chr2.3:29609637-29609656 | MS.gene77649:intron | 15.0% |
| !! | ATATGTTCTGATAAAAAAAA+GGG | - | chr2.3:29608316-29608335 | None:intergenic | 15.0% |
| !! | ATTTCTATAACAAAATCAAA+TGG | + | chr2.3:29606677-29606696 | MS.gene77649:intron | 15.0% |
| !! | TAAACCTAAAAATGATTTAT+AGG | - | chr2.3:29607526-29607545 | None:intergenic | 15.0% |
| !! | TGGAATAAAAGTAAATAATT+AGG | + | chr2.3:29606282-29606301 | MS.gene77649:intron | 15.0% |
| !!! | ATTACCTATAAATCATTTTT+AGG | + | chr2.3:29607519-29607538 | MS.gene77649:intron | 15.0% |
| !!! | ATTTTTTGATTTTCCATTTA+TGG | - | chr2.3:29609998-29610017 | None:intergenic | 15.0% |
| !!! | CTGAATTTGTTTATATTTTT+AGG | + | chr2.3:29609252-29609271 | MS.gene77649:intron | 15.0% |
| !!! | TGAATTTCATTTTTGTTAAT+TGG | + | chr2.3:29606935-29606954 | MS.gene77649:intron | 15.0% |
| !!! | TTTTTTGATTTTCCATTTAT+GGG | - | chr2.3:29609997-29610016 | None:intergenic | 15.0% |
| !! | AAAATGTATTTAAAAGTAGG+AGG | + | chr2.3:29608037-29608056 | MS.gene77649:intron | 20.0% |
| !! | CAAAATAGTGAAATAGAATT+GGG | + | chr2.3:29606364-29606383 | MS.gene77649:intron | 20.0% |
| !! | CTGAAAATGTATTTAAAAGT+AGG | + | chr2.3:29608034-29608053 | MS.gene77649:intron | 20.0% |
| !! | GATATGTTCTGATAAAAAAA+AGG | - | chr2.3:29608317-29608336 | None:intergenic | 20.0% |
| !! | TATTCTAAACAAAAGAACAT+TGG | + | chr2.3:29607132-29607151 | MS.gene77649:intron | 20.0% |
| !! | TCAAAATAGTGAAATAGAAT+TGG | + | chr2.3:29606363-29606382 | MS.gene77649:intron | 20.0% |
| !! | TCATAGAAATGAAGTTATAT+TGG | + | chr2.3:29608853-29608872 | MS.gene77649:intron | 20.0% |
| !! | TTACCAATTTACAAATATCT+AGG | - | chr2.3:29607008-29607027 | None:intergenic | 20.0% |
| !! | TTCTATCTTAAAAATTGAGT+TGG | - | chr2.3:29608106-29608125 | None:intergenic | 20.0% |
| !! | TTTGATTGGATATAGATTAT+GGG | + | chr2.3:29607810-29607829 | MS.gene77649:intron | 20.0% |
| !!! | ACAAAATCGATTTATAAAGT+GGG | - | chr2.3:29608520-29608539 | None:intergenic | 20.0% |
| !!! | ACTTTATAAATCGATTTTGT+CGG | + | chr2.3:29608520-29608539 | MS.gene77649:intron | 20.0% |
| !!! | AGGGAAATTTTTATTAAGTA+AGG | + | chr2.3:29609400-29609419 | MS.gene77649:intron | 20.0% |
| !!! | CATATCTTTATTTCAAATGT+AGG | + | chr2.3:29609770-29609789 | MS.gene77649:intron | 20.0% |
| !!! | CTACTTTTAAATACATTTTC+AGG | - | chr2.3:29608036-29608055 | None:intergenic | 20.0% |
| !!! | GCTGTTATATTTTCTTTTTA+CGG | + | chr2.3:29609162-29609181 | MS.gene77649:intron | 20.0% |
| !!! | TGTTCCTTTTTTAATATGTT+TGG | - | chr2.3:29609644-29609663 | None:intergenic | 20.0% |
| !!! | TTTTAATATGTTTGGATTTG+CGG | - | chr2.3:29609636-29609655 | None:intergenic | 20.0% |
| ! | AAAACCGATATGTAAAAAGA+AGG | - | chr2.3:29608066-29608085 | None:intergenic | 25.0% |
| ! | AAAATATAACAGCACCAAAA+AGG | - | chr2.3:29609155-29609174 | None:intergenic | 25.0% |
| ! | AGCATTATTAGTAGTAGTAT+TGG | - | chr2.3:29609074-29609093 | None:intergenic | 25.0% |
| ! | ATAAATCTGATAAAGGTAGT+AGG | + | chr2.3:29606570-29606589 | MS.gene77649:intron | 25.0% |
| ! | ATTAAGTAAGGTGACATTAA+TGG | + | chr2.3:29609412-29609431 | MS.gene77649:intron | 25.0% |
| ! | CAATTTACAAATATCTAGGT+CGG | - | chr2.3:29607004-29607023 | None:intergenic | 25.0% |
| ! | GACTACTTCATATAAATAAC+AGG | - | chr2.3:29609698-29609717 | None:intergenic | 25.0% |
| ! | GATATTCTACATTATAGAAC+TGG | - | chr2.3:29607489-29607508 | None:intergenic | 25.0% |
| ! | GCATTATTAGTAGTAGTATT+GGG | - | chr2.3:29609073-29609092 | None:intergenic | 25.0% |
| ! | GTTTGATTGGATATAGATTA+TGG | + | chr2.3:29607809-29607828 | MS.gene77649:intron | 25.0% |
| ! | TAAAAAATGGCAGAATGAAA+AGG | - | chr2.3:29606254-29606273 | None:intergenic | 25.0% |
| ! | TAAAGTTGTATGTGTTGTAA+GGG | + | chr2.3:29608167-29608186 | MS.gene77649:intron | 25.0% |
| ! | TAAATTTGATTCAGACTCTT+AGG | + | chr2.3:29606613-29606632 | MS.gene77649:intron | 25.0% |
| ! | TATAAACAAATTCAGCAGAA+AGG | - | chr2.3:29609247-29609266 | None:intergenic | 25.0% |
| ! | TCCTAATTATAAAGACATCT+CGG | - | chr2.3:29608451-29608470 | None:intergenic | 25.0% |
| ! | TTCCAATACACAGTAAAAAA+TGG | - | chr2.3:29606267-29606286 | None:intergenic | 25.0% |
| ! | TTCTATAATGTAGAATATCC+AGG | + | chr2.3:29607490-29607509 | MS.gene77649:intron | 25.0% |
| ! | TTGAATGTAGAATTCATGTT+AGG | + | chr2.3:29607331-29607350 | MS.gene77649:intron | 25.0% |
| ! | TTGTGTAAAAAAATTGGGTA+AGG | + | chr2.3:29608218-29608237 | MS.gene77649:intron | 25.0% |
| !! | ACCTTATAAGTCAATTTTGT+AGG | + | chr2.3:29608559-29608578 | MS.gene77649:intron | 25.0% |
| !! | ATACTTTGTCCCATTAATTT+TGG | - | chr2.3:29607633-29607652 | None:intergenic | 25.0% |
| !! | ATCAGAACATATCTAAGATA+AGG | + | chr2.3:29608125-29608144 | MS.gene77649:intron | 25.0% |
| !! | GACAAAATCGATTTATAAAG+TGG | - | chr2.3:29608521-29608540 | None:intergenic | 25.0% |
| !! | GACATTTTATAATCATATGC+AGG | + | chr2.3:29608886-29608905 | MS.gene77649:intron | 25.0% |
| !! | GTATCCTTCTTTTTACATAT+CGG | + | chr2.3:29608059-29608078 | MS.gene77649:intron | 25.0% |
| !! | GTGATAAAAGATTTTTCTTC+TGG | - | chr2.3:29609101-29609120 | None:intergenic | 25.0% |
| !! | TCAGAACATATCTAAGATAA+GGG | + | chr2.3:29608126-29608145 | MS.gene77649:intron | 25.0% |
| !! | TTATTTATCTAGTGGTTTGT+TGG | + | chr2.3:29609738-29609757 | MS.gene77649:intron | 25.0% |
| !!! | AAAAAAAGTACCTTCAGATT+CGG | - | chr2.3:29606208-29606227 | None:intergenic | 25.0% |
| !!! | AGACTTCTTTTGAAAAATTG+TGG | + | chr2.3:29609374-29609393 | MS.gene77649:intron | 25.0% |
| !!! | AGTAGTTGGTAATGATTAAT+TGG | + | chr2.3:29606818-29606837 | MS.gene77649:intron | 25.0% |
| !!! | CTTTATAAATCGATTTTGTC+GGG | + | chr2.3:29608521-29608540 | MS.gene77649:intron | 25.0% |
| !!! | TTTTGAAAAATTGTGGATGA+GGG | + | chr2.3:29609381-29609400 | MS.gene77649:intron | 25.0% |
| !!! | TTTTTACATATCGGTTTTGT+AGG | + | chr2.3:29608068-29608087 | MS.gene77649:intron | 25.0% |
| AAGTTGAATTTGCAGTGAAA+TGG | - | chr2.3:29607689-29607708 | None:intergenic | 30.0% | |
| AATACACCGATGATTCAAAA+GGG | - | chr2.3:29607731-29607750 | None:intergenic | 30.0% | |
| AATCTTACTTTGTTCCTTTG+CGG | + | chr2.3:29606860-29606879 | MS.gene77649:intron | 30.0% | |
| AATTCAGTTAAGTAGAGACA+TGG | - | chr2.3:29607113-29607132 | None:intergenic | 30.0% | |
| ACCTTTATCAGATTTATCTC+TGG | - | chr2.3:29606567-29606586 | None:intergenic | 30.0% | |
| AGCCTCTTGTGTAAAAAAAT+TGG | + | chr2.3:29608212-29608231 | MS.gene77649:intron | 30.0% | |
| ATATCCCAATCTTAGAAGTT+TGG | - | chr2.3:29608602-29608621 | None:intergenic | 30.0% | |
| CAGCAAGTTTAACAAAATCA+CGG | + | chr2.3:29609533-29609552 | MS.gene77649:intron | 30.0% | |
| CGACCTAGATATTTGTAAAT+TGG | + | chr2.3:29607002-29607021 | MS.gene77649:intron | 30.0% | |
| CTTGAATCGAATTACTATGA+AGG | + | chr2.3:29609948-29609967 | MS.gene77649:CDS | 30.0% | |
| GAGATGTCTTTATAATTAGG+AGG | + | chr2.3:29608450-29608469 | MS.gene77649:intron | 30.0% | |
| GCCTCTTGTGTAAAAAAATT+GGG | + | chr2.3:29608213-29608232 | MS.gene77649:intron | 30.0% | |
| GGAAAAGAAAGAGAAAAGAA+AGG | + | chr2.3:29606529-29606548 | MS.gene77649:CDS | 30.0% | |
| GTAAAGTTGTATGTGTTGTA+AGG | + | chr2.3:29608166-29608185 | MS.gene77649:intron | 30.0% | |
| GTGATTGCTTTATGTTTGAT+TGG | + | chr2.3:29607796-29607815 | MS.gene77649:intron | 30.0% | |
| TATCAGTATTCTGTTTGACA+TGG | + | chr2.3:29607167-29607186 | MS.gene77649:intron | 30.0% | |
| TATCCCAATCTTAGAAGTTT+GGG | - | chr2.3:29608601-29608620 | None:intergenic | 30.0% | |
| TCCAGAGATAAATCTGATAA+AGG | + | chr2.3:29606563-29606582 | MS.gene77649:CDS | 30.0% | |
| TCCGAGATGTCTTTATAATT+AGG | + | chr2.3:29608447-29608466 | MS.gene77649:intron | 30.0% | |
| TGTTGAGGTTATTTATCTAG+TGG | + | chr2.3:29609730-29609749 | MS.gene77649:intron | 30.0% | |
| TTGGAGATTTAACAAAACCA+CGG | - | chr2.3:29609564-29609583 | None:intergenic | 30.0% | |
| TTTGTCAAAGCTTGGAATAA+AGG | + | chr2.3:29609921-29609940 | MS.gene77649:CDS | 30.0% | |
| ! | AAGCCTTATAAAGATTACGT+TGG | + | chr2.3:29608790-29608809 | MS.gene77649:intron | 30.0% |
| ! | ACATAAGTCAGATTCTAAGA+TGG | - | chr2.3:29608726-29608745 | None:intergenic | 30.0% |
| ! | ATTTGGTATCAGATCCTTTT+TGG | + | chr2.3:29609138-29609157 | MS.gene77649:intron | 30.0% |
| ! | ATTTTTACAAACCATCCTTG+AGG | + | chr2.3:29609437-29609456 | MS.gene77649:intron | 30.0% |
| ! | CAATTTTGTAGGCTTAAGTT+AGG | + | chr2.3:29608570-29608589 | MS.gene77649:intron | 30.0% |
| ! | GCCTACAAAATTGACTTATA+AGG | - | chr2.3:29608563-29608582 | None:intergenic | 30.0% |
| ! | GTTTTTCTCTGATCTGTTAT+CGG | + | chr2.3:29609872-29609891 | MS.gene77649:CDS | 30.0% |
| ! | TAGGAGTTAGAACTTTTGTA+AGG | + | chr2.3:29607197-29607216 | MS.gene77649:intron | 30.0% |
| ! | TTTTTACAAACCATCCTTGA+GGG | + | chr2.3:29609438-29609457 | MS.gene77649:intron | 30.0% |
| !! | ACCTTATAAGTCGATTTTGT+CGG | + | chr2.3:29608481-29608500 | MS.gene77649:intron | 30.0% |
| !! | CTTTTGAAAAATTGTGGATG+AGG | + | chr2.3:29609380-29609399 | MS.gene77649:intron | 30.0% |
| !! | TAGGATTTTCAAGAATTGTC+CGG | + | chr2.3:29609789-29609808 | MS.gene77649:intron | 30.0% |
| !! | TAGTGGTTTGTTGGTATTTA+TGG | + | chr2.3:29609747-29609766 | MS.gene77649:intron | 30.0% |
| !! | TAGTTTTTCTAGGAATCAAG+AGG | + | chr2.3:29607226-29607245 | MS.gene77649:intron | 30.0% |
| !! | TTTTCAAAGTGGTTTAGGTT+GGG | + | chr2.3:29607061-29607080 | MS.gene77649:intron | 30.0% |
| !!! | AAGCAATGTTGTTTTCAAAG+TGG | + | chr2.3:29607050-29607069 | MS.gene77649:intron | 30.0% |
| !!! | ACCCAATTTTTTTACACAAG+AGG | - | chr2.3:29608217-29608236 | None:intergenic | 30.0% |
| !!! | ATTTTTAGGTTTACTGCTTG+AGG | + | chr2.3:29607533-29607552 | MS.gene77649:intron | 30.0% |
| !!! | TGCCATTTTTTACTGTGTAT+TGG | + | chr2.3:29606262-29606281 | MS.gene77649:intron | 30.0% |
| !!! | TGTTGTTTTCAAAGTGGTTT+AGG | + | chr2.3:29607056-29607075 | MS.gene77649:intron | 30.0% |
| AAACCAATCATTTCACTCCA+TGG | + | chr2.3:29607765-29607784 | MS.gene77649:intron | 35.0% | |
| AAAGTTAGCTCAATGAGTGA+AGG | + | chr2.3:29608760-29608779 | MS.gene77649:intron | 35.0% | |
| AGTATTCTGTTTGACATGGA+GGG | + | chr2.3:29607171-29607190 | MS.gene77649:intron | 35.0% | |
| ATCTTACTTTGTTCCTTTGC+GGG | + | chr2.3:29606861-29606880 | MS.gene77649:intron | 35.0% | |
| ATGATTCAAAAGGGAAAGAC+AGG | - | chr2.3:29607722-29607741 | None:intergenic | 35.0% | |
| ATTAATCATGTATCAGCTGC+AGG | + | chr2.3:29606895-29606914 | MS.gene77649:intron | 35.0% | |
| ATTTGCAAGACTACACACAT+AGG | + | chr2.3:29607961-29607980 | MS.gene77649:intron | 35.0% | |
| CAATACACCGATGATTCAAA+AGG | - | chr2.3:29607732-29607751 | None:intergenic | 35.0% | |
| CAGCAAAAGTGAAAGAAACA+TGG | + | chr2.3:29609030-29609049 | MS.gene77649:CDS | 35.0% | |
| CTGATACCAAATATTCAGCA+TGG | - | chr2.3:29609130-29609149 | None:intergenic | 35.0% | |
| CTTACAGTATACCAAATGGT+GGG | + | chr2.3:29608244-29608263 | MS.gene77649:intron | 35.0% | |
| CTTTCCAAAGAGTCTCAAAA+GGG | + | chr2.3:29606787-29606806 | MS.gene77649:intron | 35.0% | |
| GAGCAAGGAAAAAACATGAA+AGG | + | chr2.3:29607560-29607579 | MS.gene77649:intron | 35.0% | |
| GATAATAGTCCGCTGTTATA+AGG | + | chr2.3:29607870-29607889 | MS.gene77649:intron | 35.0% | |
| GGTAGCAAACTCATTATTCT+TGG | - | chr2.3:29609829-29609848 | None:intergenic | 35.0% | |
| TCTGTTATGCTACTCATGAT+CGG | + | chr2.3:29608342-29608361 | MS.gene77649:intron | 35.0% | |
| TGGCCAACGTAATCTTTATA+AGG | - | chr2.3:29608796-29608815 | None:intergenic | 35.0% | |
| TTCTTGCCATGCTGAATATT+TGG | + | chr2.3:29609121-29609140 | MS.gene77649:intron | 35.0% | |
| TTGCAGAATTTGTCAAAGCT+TGG | + | chr2.3:29609913-29609932 | MS.gene77649:CDS | 35.0% | |
| TTGGATATAGATTATGGGTC+AGG | + | chr2.3:29607815-29607834 | MS.gene77649:intron | 35.0% | |
| TTTATAGGTAATTGCAAGCC+TGG | - | chr2.3:29607511-29607530 | None:intergenic | 35.0% | |
| ! | AACTGACAGTTCAAGAGTAT+AGG | + | chr2.3:29609336-29609355 | MS.gene77649:intron | 35.0% |
| ! | AACTGTAGATGATGATGATG+AGG | + | chr2.3:29606487-29606506 | MS.gene77649:CDS | 35.0% |
| ! | ACTCATTGAGCTAACTTTTG+AGG | - | chr2.3:29608758-29608777 | None:intergenic | 35.0% |
| ! | AGCAATCACTAATTTTGCCA+TGG | - | chr2.3:29607785-29607804 | None:intergenic | 35.0% |
| ! | CAAAAGAACATTGGTACTGA+AGG | + | chr2.3:29607141-29607160 | MS.gene77649:intron | 35.0% |
| ! | CTCATTGAGCTAACTTTTGA+GGG | - | chr2.3:29608757-29608776 | None:intergenic | 35.0% |
| ! | GTCTTTCCCTTTTGAATCAT+CGG | + | chr2.3:29607722-29607741 | MS.gene77649:intron | 35.0% |
| ! | GTTTTCAAAGTGGTTTAGGT+TGG | + | chr2.3:29607060-29607079 | MS.gene77649:intron | 35.0% |
| ! | TCTAGGACGTACTATGATAA+AGG | + | chr2.3:29608648-29608667 | MS.gene77649:intron | 35.0% |
| ! | TGGGACAAAGTATCTGTATA+AGG | + | chr2.3:29607640-29607659 | MS.gene77649:intron | 35.0% |
| ! | TTAGTAGTAGTATTGGGAGT+AGG | - | chr2.3:29609067-29609086 | None:intergenic | 35.0% |
| ! | TTTTACAAACCATCCTTGAG+GGG | + | chr2.3:29609439-29609458 | MS.gene77649:intron | 35.0% |
| ! | TTTTCGCAAAAGCTATGCTT+TGG | - | chr2.3:29609583-29609602 | None:intergenic | 35.0% |
| !! | AGAATAATGAGTTTGCTACC+TGG | + | chr2.3:29609829-29609848 | MS.gene77649:CDS | 35.0% |
| !! | CAACCCAAACTTCTAAGATT+GGG | + | chr2.3:29608595-29608614 | MS.gene77649:intron | 35.0% |
| !! | CCTTATAAGTCGATTTTGTC+GGG | + | chr2.3:29608482-29608501 | MS.gene77649:intron | 35.0% |
| !! | TCAACCCAAACTTCTAAGAT+TGG | + | chr2.3:29608594-29608613 | MS.gene77649:intron | 35.0% |
| !! | TTTCAAAGTGGTTTAGGTTG+GGG | + | chr2.3:29607062-29607081 | MS.gene77649:intron | 35.0% |
| !!! | AAGGCTATGCTAGTTTTTCT+AGG | + | chr2.3:29607216-29607235 | MS.gene77649:intron | 35.0% |
| AAAGGCAACACTGGTAAAAC+AGG | - | chr2.3:29609229-29609248 | None:intergenic | 40.0% | |
| AAAGGGCTTATGTCAGTAGT+TGG | + | chr2.3:29606804-29606823 | MS.gene77649:intron | 40.0% | |
| AGGACGTACTATGATAAAGG+AGG | + | chr2.3:29608651-29608670 | MS.gene77649:intron | 40.0% | |
| ATCATTACTAAGTCCCGCAA+AGG | - | chr2.3:29606877-29606896 | None:intergenic | 40.0% | |
| ATGATGAGGAAAAGAAGAGC+AGG | + | chr2.3:29606501-29606520 | MS.gene77649:CDS | 40.0% | |
| ATTCTCCAAATGTCCAGTCT+TGG | + | chr2.3:29608372-29608391 | MS.gene77649:intron | 40.0% | |
| ATTCTTCTCTTCTTTCAGCC+AGG | - | chr2.3:29609850-29609869 | None:intergenic | 40.0% | |
| CAAAAGGGAAAGACAGGAAT+AGG | - | chr2.3:29607716-29607735 | None:intergenic | 40.0% | |
| CAGATGAGAAGAAAAGCAAG+AGG | + | chr2.3:29606459-29606478 | MS.gene77649:intron | 40.0% | |
| CAGTATTCTGTTTGACATGG+AGG | + | chr2.3:29607170-29607189 | MS.gene77649:intron | 40.0% | |
| CCAAGTAGACCTTATAACAG+CGG | - | chr2.3:29607882-29607901 | None:intergenic | 40.0% | |
| CGGACCATATCTCATTGAAT+GGG | - | chr2.3:29608431-29608450 | None:intergenic | 40.0% | |
| CGGTGAGTTTGATAGAATCA+AGG | - | chr2.3:29609616-29609635 | None:intergenic | 40.0% | |
| CTGATAAAAAAAAGGGCAGC+CGG | - | chr2.3:29608309-29608328 | None:intergenic | 40.0% | |
| CTGTTATGCTACTCATGATC+GGG | + | chr2.3:29608343-29608362 | MS.gene77649:intron | 40.0% | |
| CTTGGCAAAATAGTCATCAC+CGG | - | chr2.3:29609811-29609830 | None:intergenic | 40.0% | |
| CTTTACATGTCCTATCCTAG+AGG | - | chr2.3:29607935-29607954 | None:intergenic | 40.0% | |
| GCTGCTTACAGTATACCAAA+TGG | + | chr2.3:29608240-29608259 | MS.gene77649:intron | 40.0% | |
| GCTGTGATTCCAAACATACA+CGG | - | chr2.3:29609517-29609536 | None:intergenic | 40.0% | |
| GCTTACAGTATACCAAATGG+TGG | + | chr2.3:29608243-29608262 | MS.gene77649:intron | 40.0% | |
| GCTTTCCAAAGAGTCTCAAA+AGG | + | chr2.3:29606786-29606805 | MS.gene77649:intron | 40.0% | |
| GGACCATATCTCATTGAATG+GGG | - | chr2.3:29608430-29608449 | None:intergenic | 40.0% | |
| GTCAGAAACTGTGATTGTTG+AGG | + | chr2.3:29609715-29609734 | MS.gene77649:intron | 40.0% | |
| GTTCCCCATTCAATGAGATA+TGG | + | chr2.3:29608424-29608443 | MS.gene77649:intron | 40.0% | |
| TAACCCTAAAAGCAAGCTCA+AGG | + | chr2.3:29607844-29607863 | MS.gene77649:intron | 40.0% | |
| TCGGACCATATCTCATTGAA+TGG | - | chr2.3:29608432-29608451 | None:intergenic | 40.0% | |
| TCTAGGAATCAAGAGGATAC+TGG | + | chr2.3:29607233-29607252 | MS.gene77649:intron | 40.0% | |
| TCTATGAGATGCTAGCTCAA+TGG | - | chr2.3:29609478-29609497 | None:intergenic | 40.0% | |
| TCTTACATTGACCAGTGATG+TGG | - | chr2.3:29608816-29608835 | None:intergenic | 40.0% | |
| TTGAAGACTCCGTGTATGTT+TGG | + | chr2.3:29609505-29609524 | MS.gene77649:intron | 40.0% | |
| TTGCCATGGAGTGAAATGAT+TGG | - | chr2.3:29607771-29607790 | None:intergenic | 40.0% | |
| TTGTATGTGTTGTAAGGGCA+TGG | + | chr2.3:29608172-29608191 | MS.gene77649:intron | 40.0% | |
| ! | CCCGACAAAATCGACTTATA+AGG | - | chr2.3:29608485-29608504 | None:intergenic | 40.0% |
| ! | CGATTTTGTCGGGTTAAGTT+AGG | + | chr2.3:29608492-29608511 | MS.gene77649:intron | 40.0% |
| ! | TGTATGTGTTGTAAGGGCAT+GGG | + | chr2.3:29608173-29608192 | MS.gene77649:intron | 40.0% |
| !! | ACTCCTTGAGCTTGCTTTTA+GGG | - | chr2.3:29607850-29607869 | None:intergenic | 40.0% |
| !! | CGGTTTTGTAGGATTGAGTT+AGG | + | chr2.3:29608079-29608098 | MS.gene77649:intron | 40.0% |
| !!! | TAAGCCCTTTTGAGACTCTT+TGG | - | chr2.3:29606794-29606813 | None:intergenic | 40.0% |
| ACAACTTTACCATTGCGCCA+AGG | - | chr2.3:29608156-29608175 | None:intergenic | 45.0% | |
| AGCTGCACTGAAGGTAATCT+AGG | + | chr2.3:29608631-29608650 | MS.gene77649:intron | 45.0% | |
| AGGAAAAGAAGAGCAGGAAG+AGG | + | chr2.3:29606507-29606526 | MS.gene77649:CDS | 45.0% | |
| AGGAGGTTACGATTCCGATA+TGG | + | chr2.3:29608668-29608687 | MS.gene77649:intron | 45.0% | |
| AGGTGTGGAGAGTCTCATAT+TGG | + | chr2.3:29607999-29608018 | MS.gene77649:intron | 45.0% | |
| ATAGGTTGCCCGACAAATCT+AGG | + | chr2.3:29607979-29607998 | MS.gene77649:intron | 45.0% | |
| ATTCAGCAGAAAGGCAACAC+TGG | - | chr2.3:29609238-29609257 | None:intergenic | 45.0% | |
| CAGTGAAATGGCACAAGACA+AGG | - | chr2.3:29607677-29607696 | None:intergenic | 45.0% | |
| CCGCTGTTATAAGGTCTACT+TGG | + | chr2.3:29607879-29607898 | MS.gene77649:intron | 45.0% | |
| CTCTCCACACCTAGATTTGT+CGG | - | chr2.3:29607991-29608010 | None:intergenic | 45.0% | |
| GAAATGGCACAAGACAAGGA+TGG | - | chr2.3:29607673-29607692 | None:intergenic | 45.0% | |
| GCAACACTGGTAAAACAGGA+TGG | - | chr2.3:29609225-29609244 | None:intergenic | 45.0% | |
| GGAAAAGAAGAGCAGGAAGA+GGG | + | chr2.3:29606508-29606527 | MS.gene77649:CDS | 45.0% | |
| GGTACCAATGTTTGCAGTCT+GGG | - | chr2.3:29608705-29608724 | None:intergenic | 45.0% | |
| TCTCCACACCTAGATTTGTC+GGG | - | chr2.3:29607990-29608009 | None:intergenic | 45.0% | |
| TGAGATGCTAGCTCAATGGA+CGG | - | chr2.3:29609474-29609493 | None:intergenic | 45.0% | |
| TGGTACCAATGTTTGCAGTC+TGG | - | chr2.3:29608706-29608725 | None:intergenic | 45.0% | |
| TGTTTGACATGGAGGGTCTT+AGG | + | chr2.3:29607178-29607197 | MS.gene77649:intron | 45.0% | |
| ! | AGACTAACTGCAGGGGTTTT+GGG | + | chr2.3:29607262-29607281 | MS.gene77649:intron | 45.0% |
| ! | GAATCAAGAGGATACTGGCT+AGG | + | chr2.3:29607238-29607257 | MS.gene77649:intron | 45.0% |
| ! | TAGACTAACTGCAGGGGTTT+TGG | + | chr2.3:29607261-29607280 | MS.gene77649:intron | 45.0% |
| ! | TCTAAGATAAGGGAGAGCCT+TGG | + | chr2.3:29608136-29608155 | MS.gene77649:intron | 45.0% |
| !! | CACTCCTTGAGCTTGCTTTT+AGG | - | chr2.3:29607851-29607870 | None:intergenic | 45.0% |
| !!! | ACTGCTTGAGGTTTTGAGCA+AGG | + | chr2.3:29607545-29607564 | MS.gene77649:intron | 45.0% |
| AATGTCCAGTCTTGGACGTG+AGG | + | chr2.3:29608380-29608399 | MS.gene77649:intron | 50.0% | |
| ACAAAGCTCCCACATACGCA+GGG | - | chr2.3:29608283-29608302 | None:intergenic | 50.0% | |
| AGTTCGAATCCCCTCAAGGA+TGG | - | chr2.3:29609451-29609470 | None:intergenic | 50.0% | |
| ATGTCCAGTCTTGGACGTGA+GGG | + | chr2.3:29608381-29608400 | MS.gene77649:intron | 50.0% | |
| CACGTCCAAGACTGGACATT+TGG | - | chr2.3:29608380-29608399 | None:intergenic | 50.0% | |
| CCTTCAGATTCGGATTGCGA+AGG | - | chr2.3:29606198-29606217 | None:intergenic | 50.0% | |
| CCTTCGCAATCCGAATCTGA+AGG | + | chr2.3:29606195-29606214 | MS.gene77649:CDS | 50.0% | |
| GAACTGTCAGTTGCAGCATG+TGG | - | chr2.3:29609328-29609347 | None:intergenic | 50.0% | |
| GATTACGTTGGCCACATCAC+TGG | + | chr2.3:29608802-29608821 | MS.gene77649:intron | 50.0% | |
| GCTAGGTAGACTAACTGCAG+GGG | + | chr2.3:29607255-29607274 | MS.gene77649:intron | 50.0% | |
| GCTTCTAGTAGCTGCACTGA+AGG | + | chr2.3:29608622-29608641 | MS.gene77649:intron | 50.0% | |
| GGCTAGGTAGACTAACTGCA+GGG | + | chr2.3:29607254-29607273 | MS.gene77649:intron | 50.0% | |
| GGGAGACTCTGCTTCCATAT+CGG | - | chr2.3:29608685-29608704 | None:intergenic | 50.0% | |
| GTCCTATCCTAGAGGCGAAA+TGG | - | chr2.3:29607927-29607946 | None:intergenic | 50.0% | |
| GTCTCCCAGACTGCAAACAT+TGG | + | chr2.3:29608698-29608717 | MS.gene77649:intron | 50.0% | |
| TGGCTAGGTAGACTAACTGC+AGG | + | chr2.3:29607253-29607272 | MS.gene77649:intron | 50.0% | |
| TTGCCCGACAAATCTAGGTG+TGG | + | chr2.3:29607984-29608003 | MS.gene77649:intron | 50.0% | |
| ! | CAACATGCCATTTCGCCTCT+AGG | + | chr2.3:29607917-29607936 | MS.gene77649:intron | 50.0% |
| ! | TATGTGGGAGCTTTGTGCAC+CGG | + | chr2.3:29608287-29608306 | MS.gene77649:intron | 50.0% |
| ! | TTCCATTTATGGGCTGTGCG+AGG | - | chr2.3:29609987-29610006 | None:intergenic | 50.0% |
| !! | ACAAAATCACGGTGTCACCG+TGG | + | chr2.3:29609544-29609563 | MS.gene77649:intron | 50.0% |
| !! | TGCCATTTCGCCTCTAGGAT+AGG | + | chr2.3:29607922-29607941 | MS.gene77649:intron | 50.0% |
| ACGGAGTTCGAATCCCCTCA+AGG | - | chr2.3:29609455-29609474 | None:intergenic | 55.0% | |
| CACAAAGCTCCCACATACGC+AGG | - | chr2.3:29608284-29608303 | None:intergenic | 55.0% | |
| TTGCCAGACCCTGCGTATGT+GGG | + | chr2.3:29608272-29608291 | MS.gene77649:intron | 55.0% | |
| AAGGGAGAGCCTTGGCGCAA+TGG | + | chr2.3:29608144-29608163 | MS.gene77649:intron | 60.0% | |
| ACCACCCTCACGTCCAAGAC+TGG | - | chr2.3:29608388-29608407 | None:intergenic | 60.0% | |
| CATACGCAGGGTCTGGCAAG+CGG | - | chr2.3:29608271-29608290 | None:intergenic | 60.0% | |
| CGCCTCGCACAGCCCATAAA+TGG | + | chr2.3:29609982-29610001 | MS.gene77649:CDS | 60.0% | |
| CTTGCCAGACCCTGCGTATG+TGG | + | chr2.3:29608271-29608290 | MS.gene77649:intron | 60.0% | |
| TCCAGTCTTGGACGTGAGGG+TGG | + | chr2.3:29608384-29608403 | MS.gene77649:intron | 60.0% | |
| TGGCAAGCGGTCCCACCATT+TGG | - | chr2.3:29608258-29608277 | None:intergenic | 60.0% | |
| GCTCCCACATACGCAGGGTC+TGG | - | chr2.3:29608278-29608297 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 29606162 | 29610019 | 29606162 | ID=MS.gene77649 |
| chr2.3 | mRNA | 29606162 | 29610019 | 29606162 | ID=MS.gene77649.t1;Parent=MS.gene77649 |
| chr2.3 | exon | 29606162 | 29606216 | 29606162 | ID=MS.gene77649.t1.exon1;Parent=MS.gene77649.t1 |
| chr2.3 | CDS | 29606162 | 29606216 | 29606162 | ID=cds.MS.gene77649.t1;Parent=MS.gene77649.t1 |
| chr2.3 | exon | 29606462 | 29606584 | 29606462 | ID=MS.gene77649.t1.exon2;Parent=MS.gene77649.t1 |
| chr2.3 | CDS | 29606462 | 29606584 | 29606462 | ID=cds.MS.gene77649.t1;Parent=MS.gene77649.t1 |
| chr2.3 | exon | 29608996 | 29609051 | 29608996 | ID=MS.gene77649.t1.exon3;Parent=MS.gene77649.t1 |
| chr2.3 | CDS | 29608996 | 29609051 | 29608996 | ID=cds.MS.gene77649.t1;Parent=MS.gene77649.t1 |
| chr2.3 | exon | 29609792 | 29610019 | 29609792 | ID=MS.gene77649.t1.exon4;Parent=MS.gene77649.t1 |
| chr2.3 | CDS | 29609792 | 29610019 | 29609792 | ID=cds.MS.gene77649.t1;Parent=MS.gene77649.t1 |
| Gene Sequence |
| Protein sequence |
