Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77876.t1 | XP_003599445.2 | 96.8 | 1052 | 34 | 0 | 1 | 1052 | 1 | 1052 | 0.00E+00 | 1888.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77876.t1 | Q9LFS8 | 60.0 | 1038 | 415 | 0 | 3 | 1040 | 2 | 1039 | 0.0e+00 | 1164.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77876.t1 | G7J0X6 | 96.8 | 1052 | 34 | 0 | 1 | 1052 | 1 | 1052 | 0.0e+00 | 1888.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050838 | MS.gene77876 | 0.86535 | 6.30E-65 | -1.69E-46 |
| MS.gene051003 | MS.gene77876 | 0.806485 | 8.04E-50 | -1.69E-46 |
| MS.gene051233 | MS.gene77876 | 0.806231 | 9.09E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene77876 | 0.809262 | 2.06E-50 | -1.69E-46 |
| MS.gene051748 | MS.gene77876 | 0.839509 | 1.52E-57 | -1.69E-46 |
| MS.gene051850 | MS.gene77876 | 0.804603 | 2.00E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene77876 | 0.820051 | 8.42E-53 | -1.69E-46 |
| MS.gene052434 | MS.gene77876 | 0.802373 | 5.79E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene77876 | 0.813252 | 2.81E-51 | -1.69E-46 |
| MS.gene053109 | MS.gene77876 | 0.804615 | 1.98E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene77876 | 0.805947 | 1.04E-49 | -1.69E-46 |
| MS.gene056752 | MS.gene77876 | 0.801877 | 7.32E-49 | -1.69E-46 |
| MS.gene056764 | MS.gene77876 | 0.805449 | 1.33E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene77876 | 0.80846 | 3.06E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene77876 | 0.808466 | 3.05E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene77876 | 0.801387 | 9.22E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene77876 | 0.803093 | 4.11E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene77876 | 0.80735 | 5.28E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene77876 | 0.821078 | 4.89E-53 | -1.69E-46 |
| MS.gene060465 | MS.gene77876 | 0.803202 | 3.90E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064353 | MS.gene77876 | PPI |
| MS.gene064351 | MS.gene77876 | PPI |
| MS.gene035825 | MS.gene77876 | PPI |
| MS.gene73093 | MS.gene77876 | PPI |
| MS.gene043643 | MS.gene77876 | PPI |
| MS.gene035826 | MS.gene77876 | PPI |
| MS.gene035828 | MS.gene77876 | PPI |
| MS.gene99872 | MS.gene77876 | PPI |
| MS.gene043595 | MS.gene77876 | PPI |
| MS.gene043593 | MS.gene77876 | PPI |
| MS.gene043645 | MS.gene77876 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77876.t1 | MTR_3g033470 | 98.194 | 1052 | 19 | 0 | 1 | 1052 | 1 | 1052 | 0.0 | 2135 |
| MS.gene77876.t1 | MTR_4g115050 | 94.332 | 1041 | 59 | 0 | 12 | 1052 | 1 | 1041 | 0.0 | 2001 |
| MS.gene77876.t1 | MTR_5g036370 | 81.966 | 1048 | 188 | 1 | 5 | 1052 | 6 | 1052 | 0.0 | 1747 |
| MS.gene77876.t1 | MTR_5g036330 | 89.212 | 241 | 26 | 0 | 812 | 1052 | 1 | 241 | 2.04e-154 | 457 |
| MS.gene77876.t1 | MTR_5g036300 | 73.387 | 124 | 19 | 2 | 912 | 1032 | 2 | 114 | 9.16e-49 | 169 |
| MS.gene77876.t1 | MTR_4g061050 | 23.096 | 394 | 242 | 12 | 22 | 366 | 22 | 403 | 4.26e-13 | 74.3 |
| MS.gene77876.t1 | MTR_4g036760 | 24.045 | 445 | 248 | 15 | 21 | 394 | 22 | 447 | 6.73e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77876.t1 | AT5G15920 | 61.620 | 1037 | 398 | 0 | 5 | 1041 | 4 | 1040 | 0.0 | 1290 |
| MS.gene77876.t1 | AT5G61460 | 21.172 | 1058 | 740 | 32 | 13 | 1004 | 6 | 1035 | 1.09e-19 | 95.9 |
| MS.gene77876.t1 | AT3G47460 | 23.146 | 445 | 277 | 16 | 23 | 424 | 2 | 424 | 3.21e-13 | 74.7 |
| MS.gene77876.t1 | AT3G47460 | 23.146 | 445 | 277 | 16 | 23 | 424 | 2 | 424 | 3.47e-13 | 74.7 |
Find 215 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTAGTAATTCCCAATTT+TGG | 0.071387 | 3.4:-25279612 | None:intergenic |
| AACATCTTCCTTTCATTTAT+TGG | 0.074155 | 3.4:-25285473 | None:intergenic |
| TTCTACATGTTTCAGTTTAT+TGG | 0.091865 | 3.4:+25279555 | MS.gene77876:intron |
| TTGTAATTTGCTCCTCTTTA+TGG | 0.099665 | 3.4:-25269928 | None:intergenic |
| AATTGGGAATTACTAGTTTA+TGG | 0.115202 | 3.4:+25279616 | MS.gene77876:CDS |
| GACTAAAAGTTTCATTTATC+TGG | 0.131837 | 3.4:-25284755 | None:intergenic |
| ATCTCATCAACAACTCTAAA+TGG | 0.146895 | 3.4:-25285352 | None:intergenic |
| CATAAGTTCCATTCTCTTCT+TGG | 0.172420 | 3.4:-25275283 | None:intergenic |
| CCATAATGCAATTAAAATTA+AGG | 0.190460 | 3.4:+25280446 | MS.gene77876:CDS |
| AGCACTCACTGTGGTGTATT+TGG | 0.192925 | 3.4:-25285524 | None:intergenic |
| AGCTGATGGGGTCCCAAAAT+TGG | 0.195674 | 3.4:+25279599 | MS.gene77876:CDS |
| GTGAAGCGGGGAGAAGATTC+TGG | 0.232032 | 3.4:+25269878 | MS.gene77876:CDS |
| CTTACATTGGCAGATATTTC+AGG | 0.233435 | 3.4:-25279229 | None:intergenic |
| GAATTCCACAAGGAGGTTTA+TGG | 0.241297 | 3.4:+25278126 | MS.gene77876:CDS |
| GATATGGACTTTGATCAATT+TGG | 0.248571 | 3.4:+25284907 | MS.gene77876:CDS |
| CCTCGATTGAATCTCGTAAT+TGG | 0.254987 | 3.4:+25269655 | MS.gene77876:CDS |
| ATATGTTATTATTGACAAAA+AGG | 0.257309 | 3.4:-25284189 | None:intergenic |
| ATATATACCTCAACTAAAAC+TGG | 0.263878 | 3.4:-25278150 | None:intergenic |
| GCAGATCTGGTAACAACTTT+GGG | 0.277791 | 3.4:-25285920 | None:intergenic |
| GTTAACTCCTGTGCAACTTC+TGG | 0.284125 | 3.4:+25271844 | MS.gene77876:CDS |
| TTGTAAAATTTGCAGGTTGA+TGG | 0.302713 | 3.4:+25278005 | MS.gene77876:intron |
| AGGAAATATTGTGCCCAAAA+AGG | 0.305620 | 3.4:+25270614 | MS.gene77876:intron |
| TCTTGGCATTGTCACTTATT+CGG | 0.308112 | 3.4:-25275266 | None:intergenic |
| TCATGAACAAATTGCTTCCT+TGG | 0.327808 | 3.4:+25279905 | MS.gene77876:CDS |
| CTTGAGTCAAATTATTTACT+TGG | 0.327965 | 3.4:-25270668 | None:intergenic |
| GTAATTGGGCCAAATGGTTC+TGG | 0.330469 | 3.4:+25269670 | MS.gene77876:CDS |
| CTTGTATGTGCTATTGCTCT+TGG | 0.333455 | 3.4:+25269703 | MS.gene77876:CDS |
| TTGCATGCATTGCGAAAATC+TGG | 0.335891 | 3.4:+25278054 | MS.gene77876:CDS |
| GAAAGGATAGCATACTTAAT+AGG | 0.342576 | 3.4:-25272530 | None:intergenic |
| GGAAAGAAGCTTTGTGAATC+AGG | 0.346798 | 3.4:+25279956 | MS.gene77876:CDS |
| CAAGAAGAGAATGGAACTTA+TGG | 0.353352 | 3.4:+25275284 | MS.gene77876:CDS |
| TACATATAAAAGTCAAATTC+AGG | 0.356363 | 3.4:+25284932 | MS.gene77876:CDS |
| TCAATCTCTAAAATGTTTCC+AGG | 0.357210 | 3.4:-25269586 | None:intergenic |
| TTTCAACAGATGGCTGTTGC+TGG | 0.358447 | 3.4:+25284783 | MS.gene77876:CDS |
| CAAGCAATTGTTAGGCGTAT+TGG | 0.366177 | 3.4:+25280224 | MS.gene77876:CDS |
| TGGGAGAGCCACAAGTATTC+AGG | 0.367068 | 3.4:+25269850 | MS.gene77876:CDS |
| TATGACTTTCTGCAGTTGCT+TGG | 0.368850 | 3.4:+25269830 | MS.gene77876:intron |
| TGCAGATCTGGTAACAACTT+TGG | 0.372012 | 3.4:-25285921 | None:intergenic |
| TACAAGGTGTCTGGCTGAAC+TGG | 0.374002 | 3.4:+25284355 | MS.gene77876:CDS |
| TCCCCGCGATCGGGACTTCT+TGG | 0.375328 | 3.4:+25279135 | MS.gene77876:CDS |
| TTTCAGGAGGCGGCTCTCTT+CGG | 0.376451 | 3.4:-25279213 | None:intergenic |
| CTTCTCAGATGAGCATGATA+TGG | 0.377932 | 3.4:+25284891 | MS.gene77876:intron |
| TCATCCTTGGGAAGTTCATA+AGG | 0.384937 | 3.4:-25275672 | None:intergenic |
| GTTAGCAAAGCTTGTTGATC+AGG | 0.388465 | 3.4:+25280398 | MS.gene77876:CDS |
| CAGCATTACGTTCCTTCAAC+TGG | 0.389030 | 3.4:-25272078 | None:intergenic |
| ATTAGATGCAAAGTGCAAAA+AGG | 0.390121 | 3.4:+25275236 | MS.gene77876:CDS |
| GGCTGAACTGGATAACATTA+AGG | 0.392082 | 3.4:+25284367 | MS.gene77876:CDS |
| AACACCTCCTTGACAGCAAC+AGG | 0.393672 | 3.4:-25279371 | None:intergenic |
| CATTGGTCTAAGTCTAGATA+TGG | 0.405667 | 3.4:+25279657 | MS.gene77876:CDS |
| ATGACTTTCTGCAGTTGCTT+GGG | 0.406847 | 3.4:+25269831 | MS.gene77876:intron |
| GGAATTCATCGCGATGCTCT+TGG | 0.407101 | 3.4:-25278110 | None:intergenic |
| GCCTCACTATATTGCAGATC+TGG | 0.407453 | 3.4:-25285933 | None:intergenic |
| TATGAGAAATTACCCTTTGA+GGG | 0.412265 | 3.4:-25285999 | None:intergenic |
| GTCAAGTTGCTTGGTACACT+TGG | 0.416024 | 3.4:+25278282 | MS.gene77876:CDS |
| TGGCTTGTGAAGTTGTATCT+TGG | 0.427489 | 3.4:-25284159 | None:intergenic |
| TGATGCTCCTGTTGCTGTCA+AGG | 0.428280 | 3.4:+25279364 | MS.gene77876:CDS |
| CACACTTACAATCTCATCCT+TGG | 0.433193 | 3.4:-25275685 | None:intergenic |
| GCTGATGGGGTCCCAAAATT+GGG | 0.435739 | 3.4:+25279600 | MS.gene77876:CDS |
| GAACTCTTTCCAGAACCATT+TGG | 0.439353 | 3.4:-25269679 | None:intergenic |
| TGACCAGTATAATTTAAAAC+TGG | 0.439540 | 3.4:-25279184 | None:intergenic |
| TCTCTAGGTCGGGTGTAAGC+CGG | 0.441950 | 3.4:-25282716 | None:intergenic |
| CTCGATTGAATCTCGTAATT+GGG | 0.446122 | 3.4:+25269656 | MS.gene77876:CDS |
| CATCCTTGGGAAGTTCATAA+GGG | 0.449595 | 3.4:-25275671 | None:intergenic |
| GCGTGAGAAGGCTGCAGCAA+AGG | 0.451443 | 3.4:+25272466 | MS.gene77876:CDS |
| ACTAAAAGTTTCATTTATCT+GGG | 0.451888 | 3.4:-25284754 | None:intergenic |
| TAACATATTGGAACAATATG+AGG | 0.452120 | 3.4:+25284204 | MS.gene77876:CDS |
| TGCTAATCTTCGTAAGCAAT+TGG | 0.454477 | 3.4:+25279980 | MS.gene77876:CDS |
| CACCAGAAAATCACTATCAT+TGG | 0.458529 | 3.4:+25279640 | MS.gene77876:CDS |
| GAGAGAGGGAATTGTGGAGT+TGG | 0.462077 | 3.4:+25277820 | MS.gene77876:CDS |
| TTCATGAAGCTCCCTTTCCT+CGG | 0.462694 | 3.4:-25279889 | None:intergenic |
| GCCTACTACAATCGAGGAGT+TGG | 0.465615 | 3.4:+25284126 | MS.gene77876:CDS |
| GTCTCTTCCAGAAGTTGCAC+AGG | 0.473226 | 3.4:-25271851 | None:intergenic |
| AATCTCGTAATTGGGCCAAA+TGG | 0.473861 | 3.4:+25269664 | MS.gene77876:CDS |
| CACTAGCAACAAGTCAGAAT+GGG | 0.474858 | 3.4:+25269967 | MS.gene77876:CDS |
| CTCTAGGTCGGGTGTAAGCC+GGG | 0.475153 | 3.4:-25282715 | None:intergenic |
| CTGAATGATCAAGATTAGAT+TGG | 0.476451 | 3.4:-25279400 | None:intergenic |
| TGGCCTATGCGGAGAGCCCC+AGG | 0.479460 | 3.4:+25269723 | MS.gene77876:CDS |
| AAGAGCGACAAGCAATTGTT+AGG | 0.480114 | 3.4:+25280216 | MS.gene77876:CDS |
| GGGGAGGATGATTATATGCC+TGG | 0.481452 | 3.4:+25269568 | MS.gene77876:CDS |
| CACCAAGAAGTCCCGATCGC+GGG | 0.483962 | 3.4:-25279137 | None:intergenic |
| ACGAGATTCAATCGAGGCCC+GGG | 0.484233 | 3.4:-25269649 | None:intergenic |
| TATTCAGGCATTTGTGAAGC+GGG | 0.485114 | 3.4:+25269865 | MS.gene77876:CDS |
| TGAACAAATTGCTTCCTTGG+AGG | 0.485274 | 3.4:+25279908 | MS.gene77876:CDS |
| GTTGTTGATGAGATCAATCA+AGG | 0.485873 | 3.4:+25285361 | MS.gene77876:CDS |
| TGAAGCGGGGAGAAGATTCT+GGG | 0.486260 | 3.4:+25269879 | MS.gene77876:CDS |
| TCTCGGTATCAACTCTCGTT+TGG | 0.486444 | 3.4:+25279331 | MS.gene77876:CDS |
| TTTCATTGAATTTGATGCAA+AGG | 0.487383 | 3.4:+25280944 | MS.gene77876:CDS |
| GGATCTGAGCTCCGAGGAAA+GGG | 0.487507 | 3.4:+25279878 | MS.gene77876:CDS |
| GAAGGAATCTACAAGGTGTC+TGG | 0.489449 | 3.4:+25284346 | MS.gene77876:CDS |
| TACGAGATTCAATCGAGGCC+CGG | 0.492221 | 3.4:-25269650 | None:intergenic |
| CTCAGCGCCCATCATCAGTC+TGG | 0.493214 | 3.4:+25285185 | MS.gene77876:CDS |
| AACACAGGATCCCCGCGATC+GGG | 0.493268 | 3.4:+25279126 | MS.gene77876:CDS |
| TTGGATGTTAAACCTCTGAA+TGG | 0.494697 | 3.4:-25270649 | None:intergenic |
| TTATAGGAGGTGGAATTACA+AGG | 0.494713 | 3.4:+25275537 | MS.gene77876:intron |
| TCTCATCAACAACTCTAAAT+GGG | 0.495363 | 3.4:-25285351 | None:intergenic |
| GTATGAGAAATTACCCTTTG+AGG | 0.496181 | 3.4:-25286000 | None:intergenic |
| GATGGACGAGTTGAGGAAGC+AGG | 0.496512 | 3.4:+25275572 | MS.gene77876:CDS |
| ACACTAGCAACAAGTCAGAA+TGG | 0.497417 | 3.4:+25269966 | MS.gene77876:CDS |
| ATCTAGAGGGTCAAGTTGCT+TGG | 0.497651 | 3.4:+25278273 | MS.gene77876:CDS |
| AGAAATTCCTTCTCTAGGTC+GGG | 0.499819 | 3.4:-25282726 | None:intergenic |
| TCGCAATGCATGCAAACACT+TGG | 0.502771 | 3.4:-25278046 | None:intergenic |
| CCTCAAGAAATTCCTTCTCT+AGG | 0.511891 | 3.4:-25282731 | None:intergenic |
| ATAAGTGCACGATGTTGCTC+TGG | 0.514176 | 3.4:-25271902 | None:intergenic |
| AAGAAATTCCTTCTCTAGGT+CGG | 0.514868 | 3.4:-25282727 | None:intergenic |
| TCCAACTCCTCGATTGTAGT+AGG | 0.515559 | 3.4:-25284127 | None:intergenic |
| ACACTTACAATCTCATCCTT+GGG | 0.518016 | 3.4:-25275684 | None:intergenic |
| AGGAACTTTAAACCAGTTGA+AGG | 0.518067 | 3.4:+25272066 | MS.gene77876:CDS |
| TAGACTGAGAGAGGGAATTG+TGG | 0.518288 | 3.4:+25277814 | MS.gene77876:CDS |
| AGGATCTGAGCTCCGAGGAA+AGG | 0.519212 | 3.4:+25279877 | MS.gene77876:CDS |
| TGCAGCAAAGGAGCTTGAGA+AGG | 0.522295 | 3.4:+25272478 | MS.gene77876:CDS |
| CAACCTGGGGCTCTCCGCAT+AGG | 0.523869 | 3.4:-25269726 | None:intergenic |
| GTACCCCTCCAGACTGATGA+TGG | 0.524770 | 3.4:-25285193 | None:intergenic |
| GCACATTAAGATTACCTTGA+GGG | 0.528192 | 3.4:+25269901 | MS.gene77876:CDS |
| TTTAAATGTGAGGGACATTG+AGG | 0.531854 | 3.4:+25279857 | MS.gene77876:CDS |
| ATATGAGGCTCGTCAGAGAC+AGG | 0.533677 | 3.4:+25284219 | MS.gene77876:CDS |
| TTTGAGGGTTGCTCAATCCA+AGG | 0.533889 | 3.4:-25285984 | None:intergenic |
| CCACGAGGTTTCTCAATGTA+GGG | 0.535694 | 3.4:-25284731 | None:intergenic |
| GTCTCAGATCAATCTCATGC+TGG | 0.536098 | 3.4:+25278248 | MS.gene77876:CDS |
| TGACAATGCCAAGAAGAGAA+TGG | 0.536503 | 3.4:+25275275 | MS.gene77876:CDS |
| ACAAAGAGATGGACGAGTTG+AGG | 0.537247 | 3.4:+25275565 | MS.gene77876:CDS |
| TTGGATTGAGCAACCCTCAA+AGG | 0.539296 | 3.4:+25285986 | MS.gene77876:CDS |
| GTTGCTGGAGAAGTTTCACT+AGG | 0.539741 | 3.4:+25284798 | MS.gene77876:CDS |
| AAAACTCGATGCTGACAAGA+AGG | 0.542595 | 3.4:+25284328 | MS.gene77876:CDS |
| TCTTACCAGATGCGTGCTCT+CGG | 0.544720 | 3.4:+25279314 | MS.gene77876:intron |
| TAACACAGGATCCCCGCGAT+CGG | 0.545496 | 3.4:+25279125 | MS.gene77876:CDS |
| GGCTGAATATCGTGAAGCTA+AGG | 0.546055 | 3.4:+25272442 | MS.gene77876:CDS |
| TGGATTGAGCAACCCTCAAA+GGG | 0.546089 | 3.4:+25285987 | MS.gene77876:CDS |
| AGCGCCCATCATCAGTCTGG+AGG | 0.546453 | 3.4:+25285188 | MS.gene77876:CDS |
| GAAAAGCAAACTGAAATCGA+TGG | 0.549349 | 3.4:+25280350 | MS.gene77876:CDS |
| TTGGCAGATATTTCAGGAGG+CGG | 0.549355 | 3.4:-25279223 | None:intergenic |
| GATTACTTAAAATGTAAACC+CGG | 0.551566 | 3.4:+25269631 | MS.gene77876:CDS |
| CGATGTTGCTCTGGAAGTTG+TGG | 0.553682 | 3.4:-25271893 | None:intergenic |
| ATACTATTCACTAGAAGTTG+AGG | 0.553846 | 3.4:-25279717 | None:intergenic |
| ACTTCTGGAAGAGACAGAAA+AGG | 0.555047 | 3.4:+25271859 | MS.gene77876:CDS |
| TGAATGTAATGAATGGCCCT+TGG | 0.555314 | 3.4:+25285967 | MS.gene77876:CDS |
| AAGAGATGAACTTCTTGCCA+AGG | 0.555563 | 3.4:+25272132 | MS.gene77876:CDS |
| CTATTTAGATTTAAATGTGA+GGG | 0.555671 | 3.4:+25279848 | MS.gene77876:intron |
| TGATAATCAGTGTGGACCGC+TGG | 0.555933 | 3.4:+25286082 | MS.gene77876:intron |
| AGTATTATCACTGGACATGT+TGG | 0.556987 | 3.4:+25286115 | MS.gene77876:CDS |
| CCTAGAGAAGGAATTTCTTG+AGG | 0.557053 | 3.4:+25282731 | MS.gene77876:CDS |
| GAAACTGATCAGAAAGCTGA+TGG | 0.558582 | 3.4:+25279585 | MS.gene77876:CDS |
| ACTTCTTGGTGAACAACCTA+CGG | 0.563548 | 3.4:+25279149 | MS.gene77876:CDS |
| CTAAGCGCCACAAAATCAGC+AGG | 0.568080 | 3.4:+25268690 | MS.gene77876:CDS |
| CTGGTACATCGTAGTTCCGT+AGG | 0.569457 | 3.4:-25279165 | None:intergenic |
| TGCATTGAAGCATGTTGAGC+TGG | 0.570946 | 3.4:+25271937 | MS.gene77876:CDS |
| AAAAGAAATTGCCATGGCTG+AGG | 0.571274 | 3.4:+25272405 | MS.gene77876:CDS |
| TACTATTCACTAGAAGTTGA+GGG | 0.572061 | 3.4:-25279716 | None:intergenic |
| TTGAGGGTTGCTCAATCCAA+GGG | 0.572526 | 3.4:-25285983 | None:intergenic |
| GATCGATGGAGTATTATCAC+TGG | 0.573187 | 3.4:+25286106 | MS.gene77876:CDS |
| GGATCTTCTTGTTGAAGCCG+CGG | 0.574639 | 3.4:+25280887 | MS.gene77876:intron |
| TGCATGCATTGCGAAAATCT+GGG | 0.575622 | 3.4:+25278055 | MS.gene77876:CDS |
| GATCTTCTTGTTGAAGCCGC+GGG | 0.577579 | 3.4:+25280888 | MS.gene77876:CDS |
| ATCTCATGCTGGATATCTAG+AGG | 0.584471 | 3.4:+25278259 | MS.gene77876:CDS |
| GAAGAGACAGAAAAGGCTGT+TGG | 0.586153 | 3.4:+25271866 | MS.gene77876:CDS |
| AGCAAAGGAGCTTGAGAAGG+CGG | 0.586361 | 3.4:+25272481 | MS.gene77876:CDS |
| CACAAATGCCTGAATACTTG+TGG | 0.586797 | 3.4:-25269858 | None:intergenic |
| AAACTGATCAGAAAGCTGAT+GGG | 0.587636 | 3.4:+25279586 | MS.gene77876:CDS |
| TGAAGCTAAGGAGCGTGAGA+AGG | 0.588670 | 3.4:+25272454 | MS.gene77876:CDS |
| TTACCAGCATAGACTGAGAG+AGG | 0.589240 | 3.4:+25277805 | MS.gene77876:intron |
| GTATTCAGGCATTTGTGAAG+CGG | 0.589507 | 3.4:+25269864 | MS.gene77876:CDS |
| GCGCCCATCATCAGTCTGGA+GGG | 0.589949 | 3.4:+25285189 | MS.gene77876:CDS |
| TATAGGAGGTGGAATTACAA+GGG | 0.590156 | 3.4:+25275538 | MS.gene77876:intron |
| ACTATGCTAAGTCAATTGCC+CGG | 0.593996 | 3.4:+25282697 | MS.gene77876:CDS |
| GAATGGATCCAATAAATGAA+AGG | 0.594716 | 3.4:+25285465 | MS.gene77876:CDS |
| AGTTGCTTGGTACACTTGGA+AGG | 0.595673 | 3.4:+25278286 | MS.gene77876:CDS |
| CACATTAAGATTACCTTGAG+GGG | 0.596280 | 3.4:+25269902 | MS.gene77876:CDS |
| TGTGGACCGCTGGTGATCGA+TGG | 0.597266 | 3.4:+25286092 | MS.gene77876:CDS |
| CTGGGCCATAAACCTCCTTG+TGG | 0.598562 | 3.4:-25278131 | None:intergenic |
| GCCACGAGGTTTCTCAATGT+AGG | 0.601181 | 3.4:-25284732 | None:intergenic |
| CGCCCATCATCAGTCTGGAG+GGG | 0.601741 | 3.4:+25285190 | MS.gene77876:CDS |
| ACCAAGAAGTCCCGATCGCG+GGG | 0.605568 | 3.4:-25279136 | None:intergenic |
| ACAAGGGAAGTACAAAGAGA+TGG | 0.607131 | 3.4:+25275554 | MS.gene77876:CDS |
| ATTACTTAAAATGTAAACCC+GGG | 0.608024 | 3.4:+25269632 | MS.gene77876:CDS |
| AAACCCTTATGAACTTCCCA+AGG | 0.608677 | 3.4:+25275668 | MS.gene77876:CDS |
| ACGTAATGCTGAATTAGAGA+AGG | 0.611337 | 3.4:+25272090 | MS.gene77876:CDS |
| AATGCAGTCTTTCATAACAC+AGG | 0.612682 | 3.4:+25279111 | MS.gene77876:intron |
| AACTCACAGACCCTGTCTTG+TGG | 0.614139 | 3.4:-25271815 | None:intergenic |
| AGTATATTGAATGTAATGAA+TGG | 0.615421 | 3.4:+25285960 | MS.gene77876:CDS |
| TATGGAGAAAGAGAATCGAT+TGG | 0.615838 | 3.4:+25275302 | MS.gene77876:CDS |
| TTCATATCATACCTCAGCCA+TGG | 0.617052 | 3.4:-25272416 | None:intergenic |
| AACTGATCAGAAAGCTGATG+GGG | 0.617295 | 3.4:+25279587 | MS.gene77876:CDS |
| CTGACAAGAAGGAATCTACA+AGG | 0.619435 | 3.4:+25284339 | MS.gene77876:CDS |
| TACCCCTCCAGACTGATGAT+GGG | 0.622259 | 3.4:-25285192 | None:intergenic |
| CAGATCTGGTAACAACTTTG+GGG | 0.622648 | 3.4:-25285919 | None:intergenic |
| GCTGAGGTATGATATGAAGC+AGG | 0.623097 | 3.4:+25272421 | MS.gene77876:CDS |
| GCATGCATTGCGAAAATCTG+GGG | 0.632232 | 3.4:+25278056 | MS.gene77876:CDS |
| GCTTACACCCGACCTAGAGA+AGG | 0.633634 | 3.4:+25282719 | MS.gene77876:CDS |
| ACCAGATCTGCAATATAGTG+AGG | 0.635581 | 3.4:+25285932 | MS.gene77876:CDS |
| TCTTTAGATTGGAGAAGCGG+AGG | 0.635604 | 3.4:+25282497 | MS.gene77876:intron |
| TATATACCTCAACTAAAACT+GGG | 0.637444 | 3.4:-25278149 | None:intergenic |
| CTTTGATGAAGTGTAAAGAG+AGG | 0.639262 | 3.4:+25277912 | MS.gene77876:CDS |
| ACTATTTAGATTTAAATGTG+AGG | 0.639567 | 3.4:+25279847 | MS.gene77876:intron |
| ATTCAGGCATTTGTGAAGCG+GGG | 0.642294 | 3.4:+25269866 | MS.gene77876:CDS |
| ACATTAAGATTACCTTGAGG+GGG | 0.645553 | 3.4:+25269903 | MS.gene77876:CDS |
| TGCTCCTGTTGCTGTCAAGG+AGG | 0.645592 | 3.4:+25279367 | MS.gene77876:CDS |
| TGAGGAAGCAGGAAGAAACT+CGG | 0.649381 | 3.4:+25275583 | MS.gene77876:CDS |
| AGAATGTAGACAGAAGCTTA+CGG | 0.650313 | 3.4:+25282665 | MS.gene77876:CDS |
| TACCAGCATAGACTGAGAGA+GGG | 0.652689 | 3.4:+25277806 | MS.gene77876:intron |
| ACATTGGCAGATATTTCAGG+AGG | 0.653264 | 3.4:-25279226 | None:intergenic |
| ATGTGGCTGAAACCATTCAG+AGG | 0.657774 | 3.4:+25270637 | MS.gene77876:CDS |
| GGCACATTAAGATTACCTTG+AGG | 0.658678 | 3.4:+25269900 | MS.gene77876:CDS |
| TCTCATGCTGGATATCTAGA+GGG | 0.660256 | 3.4:+25278260 | MS.gene77876:CDS |
| TCACCAAGAAGTCCCGATCG+CGG | 0.665560 | 3.4:-25279138 | None:intergenic |
| TTAGATGCCTACTACAATCG+AGG | 0.670737 | 3.4:+25284120 | MS.gene77876:intron |
| CATTAAGATTACCTTGAGGG+GGG | 0.680350 | 3.4:+25269904 | MS.gene77876:CDS |
| AAGCAAACTGAAATCGATGG+AGG | 0.682425 | 3.4:+25280353 | MS.gene77876:CDS |
| GCTATTGCTCTTGGCCTATG+CGG | 0.686307 | 3.4:+25269712 | MS.gene77876:CDS |
| CATTGAGGATCTGAGCTCCG+AGG | 0.695183 | 3.4:+25279872 | MS.gene77876:CDS |
| TTTCATTTATCTGGGCCACG+AGG | 0.696303 | 3.4:-25284746 | None:intergenic |
| CCCTACATTGAGAAACCTCG+TGG | 0.704731 | 3.4:+25284731 | MS.gene77876:CDS |
| CCAATTACGAGATTCAATCG+AGG | 0.705532 | 3.4:-25269655 | None:intergenic |
| GCATCGCGATGAATTCCACA+AGG | 0.711479 | 3.4:+25278116 | MS.gene77876:CDS |
| AATACTCCATCGATCACCAG+CGG | 0.716795 | 3.4:-25286098 | None:intergenic |
| TCGCGATGAATTCCACAAGG+AGG | 0.719403 | 3.4:+25278119 | MS.gene77876:CDS |
| AAAACTTCGTCTGTAACCCG+CGG | 0.753881 | 3.4:-25280904 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 25268671 | 25286153 | 25268671 | ID=MS.gene77876 |
| chr3.4 | mRNA | 25268671 | 25286153 | 25268671 | ID=MS.gene77876.t1;Parent=MS.gene77876 |
| chr3.4 | exon | 25268671 | 25268711 | 25268671 | ID=MS.gene77876.t1.exon1;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25268671 | 25268711 | 25268671 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25269567 | 25269744 | 25269567 | ID=MS.gene77876.t1.exon2;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25269567 | 25269744 | 25269567 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25269845 | 25269998 | 25269845 | ID=MS.gene77876.t1.exon3;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25269845 | 25269998 | 25269845 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25270616 | 25270689 | 25270616 | ID=MS.gene77876.t1.exon4;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25270616 | 25270689 | 25270616 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25271809 | 25271958 | 25271809 | ID=MS.gene77876.t1.exon5;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25271809 | 25271958 | 25271809 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25272049 | 25272153 | 25272049 | ID=MS.gene77876.t1.exon6;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25272049 | 25272153 | 25272049 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25272392 | 25272537 | 25272392 | ID=MS.gene77876.t1.exon7;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25272392 | 25272537 | 25272392 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25275212 | 25275323 | 25275212 | ID=MS.gene77876.t1.exon8;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25275212 | 25275323 | 25275212 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25275543 | 25275698 | 25275543 | ID=MS.gene77876.t1.exon9;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25275543 | 25275698 | 25275543 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25277812 | 25277933 | 25277812 | ID=MS.gene77876.t1.exon10;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25277812 | 25277933 | 25277812 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25278020 | 25278164 | 25278020 | ID=MS.gene77876.t1.exon11;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25278020 | 25278164 | 25278020 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25278242 | 25278307 | 25278242 | ID=MS.gene77876.t1.exon12;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25278242 | 25278307 | 25278242 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25279118 | 25279246 | 25279118 | ID=MS.gene77876.t1.exon13;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25279118 | 25279246 | 25279118 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25279323 | 25279421 | 25279323 | ID=MS.gene77876.t1.exon14;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25279323 | 25279421 | 25279323 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25279570 | 25279735 | 25279570 | ID=MS.gene77876.t1.exon15;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25279570 | 25279735 | 25279570 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25279856 | 25280001 | 25279856 | ID=MS.gene77876.t1.exon16;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25279856 | 25280001 | 25279856 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25280182 | 25280245 | 25280182 | ID=MS.gene77876.t1.exon17;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25280182 | 25280245 | 25280182 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25280343 | 25280467 | 25280343 | ID=MS.gene77876.t1.exon18;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25280343 | 25280467 | 25280343 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25280888 | 25280965 | 25280888 | ID=MS.gene77876.t1.exon19;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25280888 | 25280965 | 25280888 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25282504 | 25282576 | 25282504 | ID=MS.gene77876.t1.exon20;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25282504 | 25282576 | 25282504 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25282649 | 25282752 | 25282649 | ID=MS.gene77876.t1.exon21;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25282649 | 25282752 | 25282649 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25284124 | 25284240 | 25284124 | ID=MS.gene77876.t1.exon22;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25284124 | 25284240 | 25284124 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25284311 | 25284388 | 25284311 | ID=MS.gene77876.t1.exon23;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25284311 | 25284388 | 25284311 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25284720 | 25284819 | 25284720 | ID=MS.gene77876.t1.exon24;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25284720 | 25284819 | 25284720 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25284899 | 25284953 | 25284899 | ID=MS.gene77876.t1.exon25;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25284899 | 25284953 | 25284899 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25285163 | 25285211 | 25285163 | ID=MS.gene77876.t1.exon26;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25285163 | 25285211 | 25285163 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25285295 | 25285382 | 25285295 | ID=MS.gene77876.t1.exon27;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25285295 | 25285382 | 25285295 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25285465 | 25285537 | 25285465 | ID=MS.gene77876.t1.exon28;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25285465 | 25285537 | 25285465 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25285905 | 25286008 | 25285905 | ID=MS.gene77876.t1.exon29;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25285905 | 25286008 | 25285905 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| chr3.4 | exon | 25286092 | 25286153 | 25286092 | ID=MS.gene77876.t1.exon30;Parent=MS.gene77876.t1 |
| chr3.4 | CDS | 25286092 | 25286153 | 25286092 | ID=cds.MS.gene77876.t1;Parent=MS.gene77876.t1 |
| Gene Sequence |
| Protein sequence |
