Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78252.t1 | XP_003609687.1 | 94.1 | 102 | 6 | 0 | 1 | 102 | 1 | 102 | 1.80E-46 | 194.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78252.t1 | Q39644 | 44.2 | 104 | 47 | 4 | 1 | 101 | 1 | 96 | 1.8e-10 | 66.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78252.t1 | G7JLI9 | 94.1 | 102 | 6 | 0 | 1 | 102 | 1 | 102 | 1.3e-46 | 194.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049195 | MS.gene78252 | -0.805952 | 1.04E-49 | -1.69E-46 |
MS.gene050226 | MS.gene78252 | -0.808837 | 2.54E-50 | -1.69E-46 |
MS.gene050227 | MS.gene78252 | -0.815314 | 9.85E-52 | -1.69E-46 |
MS.gene050228 | MS.gene78252 | -0.814449 | 1.53E-51 | -1.69E-46 |
MS.gene050442 | MS.gene78252 | -0.853615 | 2.13E-61 | -1.69E-46 |
MS.gene050623 | MS.gene78252 | 0.811466 | 6.90E-51 | -1.69E-46 |
MS.gene050787 | MS.gene78252 | -0.827816 | 1.27E-54 | -1.69E-46 |
MS.gene051568 | MS.gene78252 | -0.814983 | 1.17E-51 | -1.69E-46 |
MS.gene051860 | MS.gene78252 | -0.811217 | 7.82E-51 | -1.69E-46 |
MS.gene052333 | MS.gene78252 | -0.807475 | 4.96E-50 | -1.69E-46 |
MS.gene053147 | MS.gene78252 | -0.818027 | 2.43E-52 | -1.69E-46 |
MS.gene053811 | MS.gene78252 | -0.811266 | 7.63E-51 | -1.69E-46 |
MS.gene053836 | MS.gene78252 | -0.818779 | 1.64E-52 | -1.69E-46 |
MS.gene054236 | MS.gene78252 | -0.807452 | 5.02E-50 | -1.69E-46 |
MS.gene054291 | MS.gene78252 | 0.824978 | 6.02E-54 | -1.69E-46 |
MS.gene054467 | MS.gene78252 | -0.820374 | 7.09E-53 | -1.69E-46 |
MS.gene054468 | MS.gene78252 | -0.838625 | 2.57E-57 | -1.69E-46 |
MS.gene054473 | MS.gene78252 | -0.820551 | 6.46E-53 | -1.69E-46 |
MS.gene054581 | MS.gene78252 | -0.81386 | 2.07E-51 | -1.69E-46 |
MS.gene055356 | MS.gene78252 | -0.80823 | 3.43E-50 | -1.69E-46 |
MS.gene055358 | MS.gene78252 | -0.80361 | 3.21E-49 | -1.69E-46 |
MS.gene055861 | MS.gene78252 | 0.80943 | 1.90E-50 | -1.69E-46 |
MS.gene057469 | MS.gene78252 | -0.810891 | 9.20E-51 | -1.69E-46 |
MS.gene05761 | MS.gene78252 | -0.813613 | 2.34E-51 | -1.69E-46 |
MS.gene058168 | MS.gene78252 | -0.807499 | 4.91E-50 | -1.69E-46 |
MS.gene059609 | MS.gene78252 | -0.804265 | 2.35E-49 | -1.69E-46 |
MS.gene060137 | MS.gene78252 | 0.818119 | 2.31E-52 | -1.69E-46 |
MS.gene06052 | MS.gene78252 | -0.807287 | 5.44E-50 | -1.69E-46 |
MS.gene060802 | MS.gene78252 | -0.812675 | 3.76E-51 | -1.69E-46 |
MS.gene060803 | MS.gene78252 | -0.802977 | 4.34E-49 | -1.69E-46 |
MS.gene061040 | MS.gene78252 | 0.81654 | 5.25E-52 | -1.69E-46 |
MS.gene061114 | MS.gene78252 | 0.805377 | 1.37E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78252.t1 | MTR_4g120040 | 94.118 | 102 | 6 | 0 | 1 | 102 | 1 | 102 | 4.00e-69 | 202 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78252.t1 | AT4G15910 | 41.379 | 87 | 48 | 1 | 15 | 101 | 20 | 103 | 2.86e-15 | 65.9 |
MS.gene78252.t1 | AT1G02820 | 43.421 | 76 | 27 | 3 | 23 | 95 | 25 | 87 | 6.38e-11 | 54.3 |
Find 38 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTCTGTAGTATCCGGTTTC+TGG | 0.094835 | 8.4:+11746511 | None:intergenic |
TAGACATGGGCTTCTCTTCA+AGG | 0.339449 | 8.4:+11746572 | None:intergenic |
GTCTGGCGCCCATGCCGAAC+AGG | 0.356618 | 8.4:+11746534 | None:intergenic |
GTCTGTAGTATCCGGTTTCT+GGG | 0.391156 | 8.4:+11746512 | None:intergenic |
TAGTATCCGGTTTCTGGGTC+TGG | 0.400740 | 8.4:+11746517 | None:intergenic |
AGCCCATGGCTACGGAAAGC+TGG | 0.420672 | 8.4:-11746599 | MS.gene78252:CDS |
TGCTTCAGCTAGAGTTGGAT+TGG | 0.428759 | 8.4:-11746629 | MS.gene78252:CDS |
CTGACCGTTGAAGATGAAAC+AGG | 0.428944 | 8.4:+11747500 | None:intergenic |
TTCCCAGCTTTCCGTAGCCA+TGG | 0.438449 | 8.4:+11746596 | None:intergenic |
CTAGCTCTATTAGGATGATC+TGG | 0.442792 | 8.4:+11746426 | None:intergenic |
CCCATGCCGAACAGGCCTCT+TGG | 0.447286 | 8.4:+11746542 | None:intergenic |
TGGGCGCCAGACCCAGAAAC+CGG | 0.464783 | 8.4:-11746523 | MS.gene78252:CDS |
CTCTTGGCCATCTCTAGACA+TGG | 0.474198 | 8.4:+11746558 | None:intergenic |
AGATGGCCAAGAGGCCTGTT+CGG | 0.475265 | 8.4:-11746548 | MS.gene78252:CDS |
GCCAAGAGGCCTGTTCGGCA+TGG | 0.485879 | 8.4:-11746543 | MS.gene78252:CDS |
CCAAGAGGCCTGTTCGGCAT+GGG | 0.486297 | 8.4:-11746542 | MS.gene78252:CDS |
AGCATCTGTCGGAGCTCCAC+CGG | 0.490620 | 8.4:+11746463 | None:intergenic |
ATTGATGGGTCTGTAGTATC+CGG | 0.491419 | 8.4:+11746504 | None:intergenic |
GCTTCAGCTAGAGTTGGATT+GGG | 0.505486 | 8.4:-11746628 | MS.gene78252:CDS |
TCCCAGCTTTCCGTAGCCAT+GGG | 0.510770 | 8.4:+11746597 | None:intergenic |
TCTGATGCTTCAGCTAGAGT+TGG | 0.513043 | 8.4:-11746634 | MS.gene78252:CDS |
GCCCATGGCTACGGAAAGCT+GGG | 0.533179 | 8.4:-11746598 | MS.gene78252:CDS |
TGCGTTTGAGTAGCATCTGT+CGG | 0.543834 | 8.4:+11746452 | None:intergenic |
GTTAGCTTGTGAGAGAGAGC+AGG | 0.562013 | 8.4:+11747546 | None:intergenic |
AACTCTAGCTGAAGCATCAG+AGG | 0.572077 | 8.4:+11746636 | None:intergenic |
GGTAGTATAGCCCATGGCTA+CGG | 0.583121 | 8.4:-11746607 | MS.gene78252:CDS |
GCATCTGTCGGAGCTCCACC+GGG | 0.595147 | 8.4:+11746464 | None:intergenic |
TCTTGGCCATCTCTAGACAT+GGG | 0.599128 | 8.4:+11746559 | None:intergenic |
GAGAAGCCCATGTCTAGAGA+TGG | 0.605275 | 8.4:-11746565 | MS.gene78252:CDS |
TGACCGTTGAAGATGAAACA+GGG | 0.659345 | 8.4:+11747501 | None:intergenic |
GGAGAGATTGAGCAACAAGA+CGG | 0.667162 | 8.4:+11747524 | None:intergenic |
GGATTGGGTAGTATAGCCCA+TGG | 0.667307 | 8.4:-11746613 | MS.gene78252:CDS |
TCTAGCTGAAGCATCAGAGG+CGG | 0.672860 | 8.4:+11746639 | None:intergenic |
CACTCCTAAAATTGACCCGG+TGG | 0.689227 | 8.4:-11746479 | MS.gene78252:CDS |
TTACACTCCTAAAATTGACC+CGG | 0.690275 | 8.4:-11746482 | MS.gene78252:CDS |
CATGTCTAGAGATGGCCAAG+AGG | 0.705730 | 8.4:-11746557 | MS.gene78252:CDS |
ACCGTTGAAGATGAAACAGG+GGG | 0.706818 | 8.4:+11747503 | None:intergenic |
GACCGTTGAAGATGAAACAG+GGG | 0.712207 | 8.4:+11747502 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATATGTAAAATTTAGTT+TGG | + | chr8.4:11747093-11747112 | None:intergenic | 10.0% |
!! | ATAATATTATGAATCAAAGT+TGG | + | chr8.4:11746513-11746532 | None:intergenic | 15.0% |
!! | CAAATTATACTTTAAACTAA+GGG | - | chr8.4:11747177-11747196 | MS.gene78252:intron | 15.0% |
!!! | AAATTTTACATATAAACCAA+TGG | - | chr8.4:11747097-11747116 | MS.gene78252:intron | 15.0% |
!!! | ATCTTACACAAATTTAATTT+AGG | - | chr8.4:11746711-11746730 | MS.gene78252:intron | 15.0% |
!!! | GAATTTTTAAAACAATGTAA+GGG | - | chr8.4:11747260-11747279 | MS.gene78252:intron | 15.0% |
!!! | TATTTTAAAAGCCTTAAAAT+CGG | - | chr8.4:11746752-11746771 | MS.gene78252:intron | 15.0% |
!!! | TGAATTTTTAAAACAATGTA+AGG | - | chr8.4:11747259-11747278 | MS.gene78252:intron | 15.0% |
!!! | TTTCATTTTACAATTGTTTT+AGG | - | chr8.4:11747044-11747063 | MS.gene78252:intron | 15.0% |
!! | AACTATGTAAGTATTATTTG+CGG | - | chr8.4:11746849-11746868 | MS.gene78252:intron | 20.0% |
!! | CAAATAATACTTACATAGTT+TGG | + | chr8.4:11746849-11746868 | None:intergenic | 20.0% |
!! | CCAAATTATACTTTAAACTA+AGG | - | chr8.4:11747176-11747195 | MS.gene78252:intron | 20.0% |
!! | CTAAACTTTATACATAGATT+AGG | - | chr8.4:11747145-11747164 | MS.gene78252:intron | 20.0% |
!! | CTGTGATTATATATGAATTA+GGG | - | chr8.4:11746560-11746579 | MS.gene78252:CDS | 20.0% |
!! | TAAATGTTCAAATAAATCTC+TGG | + | chr8.4:11747287-11747306 | None:intergenic | 20.0% |
!! | TCTATGTATAAAGTTTAGTT+TGG | + | chr8.4:11747143-11747162 | None:intergenic | 20.0% |
!! | TCTGTGATTATATATGAATT+AGG | - | chr8.4:11746559-11746578 | MS.gene78252:CDS | 20.0% |
!!! | CAAGATAGTTTTATTATGTT+TGG | - | chr8.4:11746974-11746993 | MS.gene78252:intron | 20.0% |
!!! | CCTTAGTTTAAAGTATAATT+TGG | + | chr8.4:11747179-11747198 | None:intergenic | 20.0% |
!!! | TCTTATATGAACTTTAGTTT+TGG | - | chr8.4:11746642-11746661 | MS.gene78252:CDS | 20.0% |
! | AAATCAAACCTATAGTTGAA+AGG | + | chr8.4:11746811-11746830 | None:intergenic | 25.0% |
! | AATCAAACCTATAGTTGAAA+GGG | + | chr8.4:11746810-11746829 | None:intergenic | 25.0% |
! | ATATAGTTAACCTCATAAGA+GGG | + | chr8.4:11746948-11746967 | None:intergenic | 25.0% |
! | CTATGGTAAATTGTTAAATC+TGG | + | chr8.4:11747224-11747243 | None:intergenic | 25.0% |
! | GGTTATTTAACAGATATTCA+GGG | - | chr8.4:11746995-11747014 | MS.gene78252:intron | 25.0% |
! | TATATAGTTAACCTCATAAG+AGG | + | chr8.4:11746949-11746968 | None:intergenic | 25.0% |
! | TGGTTATTTAACAGATATTC+AGG | - | chr8.4:11746994-11747013 | MS.gene78252:intron | 25.0% |
! | TTATACATAGATTAGGATCT+AGG | - | chr8.4:11747152-11747171 | MS.gene78252:intron | 25.0% |
!!! | AAAGTTTTAATTTGGTCCAT+TGG | + | chr8.4:11747116-11747135 | None:intergenic | 25.0% |
!!! | AATTTTAGGAGTGTAATTGA+TGG | + | chr8.4:11747499-11747518 | None:intergenic | 25.0% |
!!! | ATTGTTTTAGGTTTAACTGT+AGG | - | chr8.4:11747056-11747075 | MS.gene78252:intron | 25.0% |
!!! | ATTTTAGGAGTGTAATTGAT+GGG | + | chr8.4:11747498-11747517 | None:intergenic | 25.0% |
!!! | TTGGTCAGAAAGTTTTAATT+TGG | + | chr8.4:11747124-11747143 | None:intergenic | 25.0% |
!!! | TTGTTTTAGGTTTAACTGTA+GGG | - | chr8.4:11747057-11747076 | MS.gene78252:intron | 25.0% |
! | CAGTTTGATCATTTTCTCTA+TGG | + | chr8.4:11747241-11747260 | None:intergenic | 30.0% |
!! | GACTAACTTAACCGATTTTA+AGG | + | chr8.4:11746766-11746785 | None:intergenic | 30.0% |
!! | TATCACTTATTTTTCCCTGT+AGG | - | chr8.4:11747310-11747329 | MS.gene78252:intron | 30.0% |
!!! | AACTTTAGTTTTGGTGAAGT+GGG | - | chr8.4:11746651-11746670 | MS.gene78252:CDS | 30.0% |
GTCTCTTAGCTTATCTATGT+TGG | - | chr8.4:11746783-11746802 | MS.gene78252:intron | 35.0% | |
TAACAGATATTCAGGGAACT+TGG | - | chr8.4:11747002-11747021 | MS.gene78252:intron | 35.0% | |
TACTCCTAACAAGTGTCTTA+GGG | + | chr8.4:11746890-11746909 | None:intergenic | 35.0% | |
TTACACTCCTAAAATTGACC+CGG | - | chr8.4:11747503-11747522 | MS.gene78252:intron | 35.0% | |
TTACTCCTAACAAGTGTCTT+AGG | + | chr8.4:11746891-11746910 | None:intergenic | 35.0% | |
!!! | GAACTTTAGTTTTGGTGAAG+TGG | - | chr8.4:11746650-11746669 | MS.gene78252:CDS | 35.0% |
ACTCCTAACAAGTGTCTTAG+GGG | + | chr8.4:11746889-11746908 | None:intergenic | 40.0% | |
CATCTGTTTACCCTCTTATG+AGG | - | chr8.4:11746935-11746954 | MS.gene78252:intron | 40.0% | |
TGACCGTTGAAGATGAAACA+GGG | + | chr8.4:11746487-11746506 | None:intergenic | 40.0% | |
TGTTGGTCCCTTTCAACTAT+AGG | - | chr8.4:11746800-11746819 | MS.gene78252:intron | 40.0% | |
! | ATTGATGGGTCTGTAGTATC+CGG | + | chr8.4:11747484-11747503 | None:intergenic | 40.0% |
ACCGTTGAAGATGAAACAGG+GGG | + | chr8.4:11746485-11746504 | None:intergenic | 45.0% | |
AGTCCCCTAAGACACTTGTT+AGG | - | chr8.4:11746883-11746902 | MS.gene78252:intron | 45.0% | |
CTGACCGTTGAAGATGAAAC+AGG | + | chr8.4:11746488-11746507 | None:intergenic | 45.0% | |
GACCGTTGAAGATGAAACAG+GGG | + | chr8.4:11746486-11746505 | None:intergenic | 45.0% | |
GCTTCAGCTAGAGTTGGATT+GGG | - | chr8.4:11747357-11747376 | MS.gene78252:intron | 45.0% | |
GGAGAGATTGAGCAACAAGA+CGG | + | chr8.4:11746464-11746483 | None:intergenic | 45.0% | |
GTCTGTAGTATCCGGTTTCT+GGG | + | chr8.4:11747476-11747495 | None:intergenic | 45.0% | |
TAGACATGGGCTTCTCTTCA+AGG | + | chr8.4:11747416-11747435 | None:intergenic | 45.0% | |
TCCCCCTGTTTCATCTTCAA+CGG | - | chr8.4:11746481-11746500 | MS.gene78252:CDS | 45.0% | |
TCTGATGCTTCAGCTAGAGT+TGG | - | chr8.4:11747351-11747370 | MS.gene78252:intron | 45.0% | |
TCTTGGCCATCTCTAGACAT+GGG | + | chr8.4:11747429-11747448 | None:intergenic | 45.0% | |
TGCGTTTGAGTAGCATCTGT+CGG | + | chr8.4:11747536-11747555 | None:intergenic | 45.0% | |
TGCTTCAGCTAGAGTTGGAT+TGG | - | chr8.4:11747356-11747375 | MS.gene78252:intron | 45.0% | |
! | AACTCTAGCTGAAGCATCAG+AGG | + | chr8.4:11747352-11747371 | None:intergenic | 45.0% |
!! | CTTATTTTTCCCTGTAGGCG+AGG | - | chr8.4:11747315-11747334 | MS.gene78252:intron | 45.0% |
CACTCCTAAAATTGACCCGG+TGG | - | chr8.4:11747506-11747525 | MS.gene78252:CDS | 50.0% | |
CATGTCTAGAGATGGCCAAG+AGG | - | chr8.4:11747428-11747447 | MS.gene78252:intron | 50.0% | |
CTCTTGGCCATCTCTAGACA+TGG | + | chr8.4:11747430-11747449 | None:intergenic | 50.0% | |
GAGAAGCCCATGTCTAGAGA+TGG | - | chr8.4:11747420-11747439 | MS.gene78252:intron | 50.0% | |
GGATTGGGTAGTATAGCCCA+TGG | - | chr8.4:11747372-11747391 | MS.gene78252:intron | 50.0% | |
GGTAGTATAGCCCATGGCTA+CGG | - | chr8.4:11747378-11747397 | MS.gene78252:intron | 50.0% | |
GGTCTGTAGTATCCGGTTTC+TGG | + | chr8.4:11747477-11747496 | None:intergenic | 50.0% | |
! | AGCTCCACCGGGTCAATTTT+AGG | + | chr8.4:11747513-11747532 | None:intergenic | 50.0% |
! | TAGTATCCGGTTTCTGGGTC+TGG | + | chr8.4:11747471-11747490 | None:intergenic | 50.0% |
! | TCTAGCTGAAGCATCAGAGG+CGG | + | chr8.4:11747349-11747368 | None:intergenic | 50.0% |
!! | GTTAGCTTGTGAGAGAGAGC+AGG | + | chr8.4:11746442-11746461 | None:intergenic | 50.0% |
AGATGGCCAAGAGGCCTGTT+CGG | - | chr8.4:11747437-11747456 | MS.gene78252:intron | 55.0% | |
GCTGCAAAACCTCGCCTACA+GGG | + | chr8.4:11747327-11747346 | None:intergenic | 55.0% | |
TCCCAGCTTTCCGTAGCCAT+GGG | + | chr8.4:11747391-11747410 | None:intergenic | 55.0% | |
TTCCCAGCTTTCCGTAGCCA+TGG | + | chr8.4:11747392-11747411 | None:intergenic | 55.0% | |
AGCATCTGTCGGAGCTCCAC+CGG | + | chr8.4:11747525-11747544 | None:intergenic | 60.0% | |
AGCCCATGGCTACGGAAAGC+TGG | - | chr8.4:11747386-11747405 | MS.gene78252:intron | 60.0% | |
CCAAGAGGCCTGTTCGGCAT+GGG | - | chr8.4:11747443-11747462 | MS.gene78252:intron | 60.0% | |
GCCCATGGCTACGGAAAGCT+GGG | - | chr8.4:11747387-11747406 | MS.gene78252:intron | 60.0% | |
GGCTGCAAAACCTCGCCTAC+AGG | + | chr8.4:11747328-11747347 | None:intergenic | 60.0% | |
CCCATGCCGAACAGGCCTCT+TGG | + | chr8.4:11747446-11747465 | None:intergenic | 65.0% | |
GCATCTGTCGGAGCTCCACC+GGG | + | chr8.4:11747524-11747543 | None:intergenic | 65.0% | |
GCCAAGAGGCCTGTTCGGCA+TGG | - | chr8.4:11747442-11747461 | MS.gene78252:intron | 65.0% | |
TGGGCGCCAGACCCAGAAAC+CGG | - | chr8.4:11747462-11747481 | MS.gene78252:intron | 65.0% | |
GTCTGGCGCCCATGCCGAAC+AGG | + | chr8.4:11747454-11747473 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 11746435 | 11747572 | 11746435 | ID=MS.gene78252 |
chr8.4 | mRNA | 11746435 | 11747572 | 11746435 | ID=MS.gene78252.t1;Parent=MS.gene78252 |
chr8.4 | exon | 11747505 | 11747572 | 11747505 | ID=MS.gene78252.t1.exon1;Parent=MS.gene78252.t1 |
chr8.4 | CDS | 11747505 | 11747572 | 11747505 | ID=cds.MS.gene78252.t1;Parent=MS.gene78252.t1 |
chr8.4 | exon | 11746435 | 11746675 | 11746435 | ID=MS.gene78252.t1.exon2;Parent=MS.gene78252.t1 |
chr8.4 | CDS | 11746435 | 11746675 | 11746435 | ID=cds.MS.gene78252.t1;Parent=MS.gene78252.t1 |
Gene Sequence |
Protein sequence |