Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028393.t1 | AES63022.2 | 78.5 | 595 | 33 | 4 | 66 | 566 | 241 | 834 | 3.60E-229 | 804.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028393.t1 | Q9C7E7 | 67.1 | 456 | 142 | 4 | 112 | 563 | 335 | 786 | 9.3e-157 | 555.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028393.t1 | G7IF06 | 78.5 | 595 | 33 | 4 | 66 | 566 | 241 | 834 | 2.6e-229 | 804.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028393.t1 | MTR_1g115920 | 93.013 | 458 | 28 | 2 | 112 | 566 | 378 | 834 | 0.0 | 785 |
| MS.gene028393.t1 | MTR_1g115920 | 86.567 | 67 | 5 | 2 | 3 | 67 | 82 | 146 | 3.39e-23 | 104 |
| MS.gene028393.t1 | MTR_4g094355 | 84.387 | 269 | 19 | 3 | 25 | 293 | 6 | 251 | 1.90e-140 | 414 |
| MS.gene028393.t1 | MTR_4g094355 | 92.147 | 191 | 15 | 0 | 376 | 566 | 250 | 440 | 1.21e-121 | 366 |
| MS.gene028393.t1 | MTR_5g039050 | 84.753 | 223 | 25 | 3 | 256 | 478 | 67 | 280 | 6.37e-112 | 340 |
| MS.gene028393.t1 | MTR_5g039050 | 82.222 | 45 | 7 | 1 | 118 | 161 | 6 | 50 | 1.48e-14 | 76.3 |
| MS.gene028393.t1 | MTR_5g039100 | 75.362 | 69 | 12 | 2 | 2 | 67 | 38 | 104 | 3.20e-19 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028393.t1 | AT1G28060 | 66.813 | 455 | 145 | 3 | 112 | 563 | 335 | 786 | 0.0 | 598 |
| MS.gene028393.t1 | AT1G28060 | 66.813 | 455 | 145 | 3 | 112 | 563 | 335 | 786 | 0.0 | 598 |
| MS.gene028393.t1 | AT1G28060 | 66.813 | 455 | 145 | 3 | 112 | 563 | 335 | 786 | 0.0 | 598 |
| MS.gene028393.t1 | AT3G55930 | 62.222 | 270 | 98 | 3 | 293 | 560 | 3 | 270 | 5.82e-99 | 301 |
Find 144 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACACCAGAACACATTTAT+TGG | 0.127318 | 4.2:-18505485 | None:intergenic |
| ATAAAATTGAAGAGTAAATT+TGG | 0.190886 | 4.2:+18504605 | MS.gene028393:CDS |
| TCTCCTTAGCCATACGCTTT+TGG | 0.207554 | 4.2:-18504973 | None:intergenic |
| TGCTGGGGTTCCTCATTATT+GGG | 0.233213 | 4.2:+18505594 | MS.gene028393:CDS |
| AATTGGATGATAAGAGAATT+AGG | 0.237950 | 4.2:+18504081 | MS.gene028393:CDS |
| ATGCTGGGGTTCCTCATTAT+TGG | 0.242299 | 4.2:+18505593 | MS.gene028393:CDS |
| CTTCTGCATTCTGGAAATTA+TGG | 0.253483 | 4.2:+18504788 | MS.gene028393:CDS |
| ACACACTTGTCTCACTTTAC+AGG | 0.257138 | 4.2:+18505245 | MS.gene028393:CDS |
| ACAAGTGTGTCCAATGTATT+TGG | 0.267435 | 4.2:-18505232 | None:intergenic |
| CTCATCTTGACCTTTGGTTT+TGG | 0.279974 | 4.2:-18505037 | None:intergenic |
| CTTTGCTAGCTGTGCTTGTT+TGG | 0.291419 | 4.2:-18504654 | None:intergenic |
| TCCTGTTTAGTTGGCTTGAT+AGG | 0.304342 | 4.2:-18504932 | None:intergenic |
| CTCTGTAATTTCTATTAAGT+TGG | 0.305002 | 4.2:-18504702 | None:intergenic |
| ATTAAGTTGGGATTGATATC+AGG | 0.316384 | 4.2:-18504689 | None:intergenic |
| AAGCAACCTTAGCACATTAA+AGG | 0.318390 | 4.2:+18504400 | MS.gene028393:CDS |
| TTCTTCTGCTCCTGTTTAGT+TGG | 0.318787 | 4.2:-18504941 | None:intergenic |
| GGTGGAGGGGCGGGCTCAGC+AGG | 0.333316 | 4.2:-18504902 | None:intergenic |
| GACGTGGCACTTCTGCATTC+TGG | 0.335270 | 4.2:+18504779 | MS.gene028393:CDS |
| GTTCATCTATTTCACGTCCC+TGG | 0.343803 | 4.2:-18504349 | None:intergenic |
| ATGATAAGAGAATTAGGGTT+AGG | 0.350518 | 4.2:+18504087 | MS.gene028393:CDS |
| GAACCTATTGAAACTCGATT+TGG | 0.351326 | 4.2:-18505521 | None:intergenic |
| TGAAATACTAAAACCTGTAT+TGG | 0.355353 | 4.2:+18504454 | MS.gene028393:CDS |
| AGATGAAGGCAATATGAAAA+TGG | 0.363556 | 4.2:+18504835 | MS.gene028393:CDS |
| AAGAAGGAACGTAGGAGATT+TGG | 0.374683 | 4.2:+18504122 | MS.gene028393:CDS |
| AAATTACTCATCTTGACCTT+TGG | 0.381357 | 4.2:-18505043 | None:intergenic |
| TTGCCAAATCGAGTTTCAAT+AGG | 0.388491 | 4.2:+18505518 | MS.gene028393:CDS |
| ATTGGATGATAAGAGAATTA+GGG | 0.389557 | 4.2:+18504082 | MS.gene028393:CDS |
| AGGTTGAGGTGGTGGAGGGG+CGG | 0.390911 | 4.2:-18504912 | None:intergenic |
| TGTTTGTGGAGGAAGGAAAA+TGG | 0.392737 | 4.2:+18504564 | MS.gene028393:CDS |
| TCTGTAATTTCTATTAAGTT+GGG | 0.393151 | 4.2:-18504701 | None:intergenic |
| TTGATAGGTTGAGGTGGTGG+AGG | 0.401991 | 4.2:-18504917 | None:intergenic |
| AGCAAGTCAATTAAGAGGTA+TGG | 0.404160 | 4.2:+18505388 | MS.gene028393:CDS |
| TTCTTCTCACGCAGCTCAGC+AGG | 0.405655 | 4.2:-18505187 | None:intergenic |
| TCAAAATGAGGATTAGATTC+AGG | 0.407433 | 4.2:-18504485 | None:intergenic |
| TGCAGCTGCTGAGCGTGAGC+AGG | 0.412035 | 4.2:+18505129 | MS.gene028393:CDS |
| ACCTATCAAGCCAACTAAAC+AGG | 0.413749 | 4.2:+18504931 | MS.gene028393:CDS |
| TTCATCTATTTCACGTCCCT+GGG | 0.414957 | 4.2:-18504348 | None:intergenic |
| GGTTGAGGTGGTGGAGGGGC+GGG | 0.419674 | 4.2:-18504911 | None:intergenic |
| ATATAGCGAGGATCGGGAAT+TGG | 0.420235 | 4.2:+18504064 | MS.gene028393:CDS |
| CTCGATACTCCTCGCATAAG+AGG | 0.421449 | 4.2:+18504030 | MS.gene028393:CDS |
| TTATGCTTAGACGCATCAAT+TGG | 0.421874 | 4.2:+18505416 | MS.gene028393:CDS |
| TTTAATGTGCTAAGGTTGCT+TGG | 0.430099 | 4.2:-18504398 | None:intergenic |
| CACCACTCAATATCCGGAAT+CGG | 0.431295 | 4.2:-18504755 | None:intergenic |
| GGCTCAGCAGGCGGTTCAAT+AGG | 0.433119 | 4.2:-18504890 | None:intergenic |
| ATAAACTGTAGAGCGGGCCT+TGG | 0.434948 | 4.2:-18505287 | None:intergenic |
| CAAAGCTCCTGCGGCCTAAG+AGG | 0.436122 | 4.2:+18504531 | MS.gene028393:CDS |
| AACTTTACGAGCAGCTGCTT+CGG | 0.436123 | 4.2:-18505563 | None:intergenic |
| GGCTTGATAGGTTGAGGTGG+TGG | 0.440923 | 4.2:-18504920 | None:intergenic |
| TGTTCTTCGTCTTGACGCCC+AGG | 0.441585 | 4.2:+18504331 | MS.gene028393:CDS |
| CGATGCCAATAAATGTGTTC+TGG | 0.441704 | 4.2:+18505480 | MS.gene028393:CDS |
| AACAGAAAATTCATCCTCTT+AGG | 0.449563 | 4.2:-18504545 | None:intergenic |
| GGAGGGGCGGGCTCAGCAGG+CGG | 0.453459 | 4.2:-18504899 | None:intergenic |
| AAAACTGAAGGACCCGATTC+CGG | 0.455391 | 4.2:+18504742 | MS.gene028393:CDS |
| TGATAAGAGAATTAGGGTTA+GGG | 0.455771 | 4.2:+18504088 | MS.gene028393:CDS |
| AGTAATTTACATAAGGTACT+AGG | 0.456676 | 4.2:+18505058 | MS.gene028393:CDS |
| ACGTCCCACCACTCAATATC+CGG | 0.458176 | 4.2:-18504761 | None:intergenic |
| ATTAGTGTTGTCGTGGTTGA+AGG | 0.473394 | 4.2:+18505361 | MS.gene028393:CDS |
| TGCTGAGCTGCGTGAGAAGA+AGG | 0.474449 | 4.2:+18505189 | MS.gene028393:CDS |
| AGATCCCACCCGGCTTGAAA+AGG | 0.474598 | 4.2:+18505096 | MS.gene028393:CDS |
| AGGAGATTTGGTGATAAACT+TGG | 0.481118 | 4.2:+18504134 | MS.gene028393:CDS |
| CACACTTGTCTCACTTTACA+GGG | 0.483911 | 4.2:+18505246 | MS.gene028393:CDS |
| TAGAGAATATAGCGAGGATC+GGG | 0.485543 | 4.2:+18504058 | MS.gene028393:CDS |
| GTGAGCAGGCTCACATAGAT+AGG | 0.485650 | 4.2:+18505143 | MS.gene028393:CDS |
| GCTCAACAAAATCGTTTGAC+TGG | 0.491510 | 4.2:+18505316 | MS.gene028393:CDS |
| TAGGGTTTCTGAAGCAAAGA+AGG | 0.491982 | 4.2:+18504106 | MS.gene028393:CDS |
| TTCAGAAGAAAGCACACAGT+TGG | 0.492012 | 4.2:+18504262 | MS.gene028393:CDS |
| CAAGATGAGTAATTTACATA+AGG | 0.497213 | 4.2:+18505051 | MS.gene028393:CDS |
| AACAGGAGCAGAAGAAACTA+AGG | 0.497775 | 4.2:+18504948 | MS.gene028393:CDS |
| TGGGCGTCAAGACGAAGAAC+AGG | 0.500740 | 4.2:-18504329 | None:intergenic |
| TCAGGATCGACATCCAATAC+AGG | 0.501479 | 4.2:-18504467 | None:intergenic |
| GCCTTCATCTATAGTACCGT+TGG | 0.504964 | 4.2:-18504822 | None:intergenic |
| GGAGCCTTGGTTGGTTTCTG+AGG | 0.506975 | 4.2:-18504308 | None:intergenic |
| TGCCTTAGCAAAGGCTAAGA+AGG | 0.507867 | 4.2:+18504175 | MS.gene028393:CDS |
| TGATAGGTTGAGGTGGTGGA+GGG | 0.509364 | 4.2:-18504916 | None:intergenic |
| ACCACTCAATATCCGGAATC+GGG | 0.511345 | 4.2:-18504754 | None:intergenic |
| GCAAGTCAATTAAGAGGTAT+GGG | 0.512247 | 4.2:+18505389 | MS.gene028393:CDS |
| CAAGTGTGTCCAATGTATTT+GGG | 0.514012 | 4.2:-18505231 | None:intergenic |
| TCAGAAGAAAGCACACAGTT+GGG | 0.515196 | 4.2:+18504263 | MS.gene028393:CDS |
| TAAACTGTAGAGCGGGCCTT+GGG | 0.515526 | 4.2:-18505286 | None:intergenic |
| CGAAGAACAGGAGCCTTGGT+TGG | 0.517067 | 4.2:-18504317 | None:intergenic |
| ACTTTCATGTGGAAATTCCT+CGG | 0.518196 | 4.2:+18504867 | MS.gene028393:CDS |
| GTGGAAGCAAGTCAATTAAG+AGG | 0.522404 | 4.2:+18505383 | MS.gene028393:CDS |
| GACCCAAAAGCGTATGGCTA+AGG | 0.527773 | 4.2:+18504970 | MS.gene028393:CDS |
| GGCTAAGGAGAAAGCACGAC+AGG | 0.533388 | 4.2:+18504985 | MS.gene028393:CDS |
| GAGCCTTGGTTGGTTTCTGA+GGG | 0.533893 | 4.2:-18504307 | None:intergenic |
| AGCTCAAGCAAAAGAGCAGA+AGG | 0.535132 | 4.2:+18504631 | MS.gene028393:CDS |
| GGATATTGAGTGGTGGGACG+TGG | 0.536150 | 4.2:+18504763 | MS.gene028393:CDS |
| GTTTCATGACCCAAATACAT+TGG | 0.539983 | 4.2:+18505222 | MS.gene028393:CDS |
| AGCTGCGTGAGAAGAAGGAA+AGG | 0.547194 | 4.2:+18505194 | MS.gene028393:CDS |
| ATCGAAGTGCGATGAAGAGA+TGG | 0.548205 | 4.2:+18504001 | MS.gene028393:CDS |
| CCCATTCTCTCATCAAAATG+AGG | 0.549338 | 4.2:-18504497 | None:intergenic |
| ATAGAGAATATAGCGAGGAT+CGG | 0.549922 | 4.2:+18504057 | MS.gene028393:CDS |
| CAAACAAGCACAGCTAGCAA+AGG | 0.555686 | 4.2:+18504655 | MS.gene028393:CDS |
| TTCTGAGGGACAGTAACGTC+GGG | 0.556866 | 4.2:-18504293 | None:intergenic |
| AAGACGAAGAACAGGAGCCT+TGG | 0.557281 | 4.2:-18504321 | None:intergenic |
| TTCATCTATAGTACCGTTGG+CGG | 0.558630 | 4.2:-18504819 | None:intergenic |
| GACGAAAGAGAGGGTAGCAA+AGG | 0.561832 | 4.2:+18503969 | MS.gene028393:CDS |
| TGTTGACCTTTAATGTGCTA+AGG | 0.561959 | 4.2:-18504406 | None:intergenic |
| GTTCTTCGTCTTGACGCCCA+GGG | 0.562372 | 4.2:+18504332 | MS.gene028393:CDS |
| AATTCATCCTCTTAGGCCGC+AGG | 0.563858 | 4.2:-18504538 | None:intergenic |
| GGAAGAATTCAACTTTCATG+TGG | 0.569338 | 4.2:+18504856 | MS.gene028393:CDS |
| AGTGTTGTCGTGGTTGAAGG+TGG | 0.570940 | 4.2:+18505364 | MS.gene028393:CDS |
| TTAGTTGGCTTGATAGGTTG+AGG | 0.576255 | 4.2:-18504926 | None:intergenic |
| ATTAACATAAACTGTAGAGC+GGG | 0.580679 | 4.2:-18505293 | None:intergenic |
| GTAATTTACATAAGGTACTA+GGG | 0.581923 | 4.2:+18505059 | MS.gene028393:CDS |
| AGCCTTCTTAGCCTTTGCTA+AGG | 0.581971 | 4.2:-18504177 | None:intergenic |
| GATAGGTTGAGGTGGTGGAG+GGG | 0.582077 | 4.2:-18504915 | None:intergenic |
| GTTGGCTTGATAGGTTGAGG+TGG | 0.586185 | 4.2:-18504923 | None:intergenic |
| GCCAACGGTACTATAGATGA+AGG | 0.586217 | 4.2:+18504821 | MS.gene028393:CDS |
| CTAAGGCATCACTACTAGAG+AGG | 0.588190 | 4.2:-18504160 | None:intergenic |
| AAAGAGAGGGTAGCAAAGGT+AGG | 0.594676 | 4.2:+18503973 | MS.gene028393:CDS |
| TATGGTGACATTGCCGCCAA+CGG | 0.595136 | 4.2:+18504806 | MS.gene028393:CDS |
| ACTAAGGACCCAAAAGCGTA+TGG | 0.600708 | 4.2:+18504964 | MS.gene028393:CDS |
| TGATGGTATTAGTGTTGTCG+TGG | 0.603393 | 4.2:+18505354 | MS.gene028393:CDS |
| TCTATCTTTCCTCTTATGCG+AGG | 0.606208 | 4.2:-18504039 | None:intergenic |
| GACAGGGATATGGGATACGA+TGG | 0.607091 | 4.2:+18503945 | None:intergenic |
| CATTTGTATAGTTGACAGCA+TGG | 0.608274 | 4.2:-18505618 | None:intergenic |
| CGACAGGAGATGATTAGAGA+GGG | 0.610590 | 4.2:+18505001 | MS.gene028393:CDS |
| CGATTCCGGATATTGAGTGG+TGG | 0.614030 | 4.2:+18504756 | MS.gene028393:CDS |
| AAATGACTTCTCTCATCCCA+AGG | 0.614270 | 4.2:+18505270 | MS.gene028393:CDS |
| GGATGTGCGGTGATTTGTGA+TGG | 0.616908 | 4.2:+18505337 | MS.gene028393:CDS |
| TGTAATGAAAGCAAAACTGA+AGG | 0.617069 | 4.2:+18504730 | MS.gene028393:CDS |
| ACAGCATGGTCCCAATAATG+AGG | 0.617442 | 4.2:-18505604 | None:intergenic |
| TAGTAGTGATGCCTTAGCAA+AGG | 0.620911 | 4.2:+18504166 | MS.gene028393:CDS |
| AGCACAGCTAGCAAAGGCAA+AGG | 0.626359 | 4.2:+18504661 | MS.gene028393:CDS |
| ATACGATGGAGACGAAAGAG+AGG | 0.628066 | 4.2:+18503959 | MS.gene028393:CDS |
| GCAGGCGGTTCAATAGGCCG+AGG | 0.628346 | 4.2:-18504884 | None:intergenic |
| CATAGAACCGCCAAAACCAA+AGG | 0.629032 | 4.2:+18505027 | MS.gene028393:CDS |
| CCAATAAATGTGTTCTGGTG+TGG | 0.635559 | 4.2:+18505485 | MS.gene028393:CDS |
| ACGACAGGAGATGATTAGAG+AGG | 0.638900 | 4.2:+18505000 | MS.gene028393:CDS |
| TTTCTGAGGGACAGTAACGT+CGG | 0.642738 | 4.2:-18504294 | None:intergenic |
| GATTCCGGATATTGAGTGGT+GGG | 0.645660 | 4.2:+18504757 | MS.gene028393:CDS |
| ACCCGATTCCGGATATTGAG+TGG | 0.647460 | 4.2:+18504753 | MS.gene028393:CDS |
| TCAACAAAACAAAGCTCCTG+CGG | 0.648319 | 4.2:+18504522 | MS.gene028393:CDS |
| GGACGTGAAATAGATGAACA+TGG | 0.655823 | 4.2:+18504353 | MS.gene028393:CDS |
| AAATGTGTTCTGGTGTGGCA+AGG | 0.657323 | 4.2:+18505490 | MS.gene028393:CDS |
| GAAGTGCGATGAAGAGATGG+AGG | 0.664040 | 4.2:+18504004 | MS.gene028393:CDS |
| TACGATGGAGACGAAAGAGA+GGG | 0.671943 | 4.2:+18503960 | MS.gene028393:CDS |
| GAAAGATAGAGAATATAGCG+AGG | 0.672126 | 4.2:+18504052 | MS.gene028393:CDS |
| CTGAAGCAAAGAAGGAACGT+AGG | 0.673233 | 4.2:+18504114 | MS.gene028393:CDS |
| AAATCGTTTGACTGGATGTG+CGG | 0.693768 | 4.2:+18505324 | MS.gene028393:CDS |
| AAGCAACTCAAGATCCCACC+CGG | 0.703568 | 4.2:+18505086 | MS.gene028393:CDS |
| CATTAACATAAACTGTAGAG+CGG | 0.704797 | 4.2:-18505294 | None:intergenic |
| TGTCCCTCAGAAACCAACCA+AGG | 0.741969 | 4.2:+18504304 | MS.gene028393:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTGAAGAGTAAATT+TGG | + | chr4.2:18504605-18504624 | MS.gene028393:CDS | 15.0% |
| !! | TCTGTAATTTCTATTAAGTT+GGG | - | chr4.2:18504704-18504723 | None:intergenic | 20.0% |
| ! | AATTGGATGATAAGAGAATT+AGG | + | chr4.2:18504081-18504100 | MS.gene028393:CDS | 25.0% |
| ! | ATTGGATGATAAGAGAATTA+GGG | + | chr4.2:18504082-18504101 | MS.gene028393:CDS | 25.0% |
| ! | CAAGATGAGTAATTTACATA+AGG | + | chr4.2:18505051-18505070 | MS.gene028393:CDS | 25.0% |
| ! | CTCTGTAATTTCTATTAAGT+TGG | - | chr4.2:18504705-18504724 | None:intergenic | 25.0% |
| ! | TGAAATACTAAAACCTGTAT+TGG | + | chr4.2:18504454-18504473 | MS.gene028393:CDS | 25.0% |
| !! | AGTAATTTACATAAGGTACT+AGG | + | chr4.2:18505058-18505077 | MS.gene028393:CDS | 25.0% |
| !! | GTAATTTACATAAGGTACTA+GGG | + | chr4.2:18505059-18505078 | MS.gene028393:CDS | 25.0% |
| AAATTACTCATCTTGACCTT+TGG | - | chr4.2:18505046-18505065 | None:intergenic | 30.0% | |
| AACAGAAAATTCATCCTCTT+AGG | - | chr4.2:18504548-18504567 | None:intergenic | 30.0% | |
| AGATGAAGGCAATATGAAAA+TGG | + | chr4.2:18504835-18504854 | MS.gene028393:CDS | 30.0% | |
| ATGATAAGAGAATTAGGGTT+AGG | + | chr4.2:18504087-18504106 | MS.gene028393:CDS | 30.0% | |
| ATTAACATAAACTGTAGAGC+GGG | - | chr4.2:18505296-18505315 | None:intergenic | 30.0% | |
| CATTAACATAAACTGTAGAG+CGG | - | chr4.2:18505297-18505316 | None:intergenic | 30.0% | |
| TCAAAATGAGGATTAGATTC+AGG | - | chr4.2:18504488-18504507 | None:intergenic | 30.0% | |
| TGATAAGAGAATTAGGGTTA+GGG | + | chr4.2:18504088-18504107 | MS.gene028393:CDS | 30.0% | |
| TGTAATGAAAGCAAAACTGA+AGG | + | chr4.2:18504730-18504749 | MS.gene028393:CDS | 30.0% | |
| !! | ATTAAGTTGGGATTGATATC+AGG | - | chr4.2:18504692-18504711 | None:intergenic | 30.0% |
| AAGCAACCTTAGCACATTAA+AGG | + | chr4.2:18504400-18504419 | MS.gene028393:CDS | 35.0% | |
| ACAAGTGTGTCCAATGTATT+TGG | - | chr4.2:18505235-18505254 | None:intergenic | 35.0% | |
| ACTTTCATGTGGAAATTCCT+CGG | + | chr4.2:18504867-18504886 | MS.gene028393:CDS | 35.0% | |
| AGCAAGTCAATTAAGAGGTA+TGG | + | chr4.2:18505388-18505407 | MS.gene028393:CDS | 35.0% | |
| ATAGAGAATATAGCGAGGAT+CGG | + | chr4.2:18504057-18504076 | MS.gene028393:CDS | 35.0% | |
| CAAGTGTGTCCAATGTATTT+GGG | - | chr4.2:18505234-18505253 | None:intergenic | 35.0% | |
| CATTTGTATAGTTGACAGCA+TGG | - | chr4.2:18505621-18505640 | None:intergenic | 35.0% | |
| GAAAGATAGAGAATATAGCG+AGG | + | chr4.2:18504052-18504071 | MS.gene028393:CDS | 35.0% | |
| GAACCTATTGAAACTCGATT+TGG | - | chr4.2:18505524-18505543 | None:intergenic | 35.0% | |
| GGAAGAATTCAACTTTCATG+TGG | + | chr4.2:18504856-18504875 | MS.gene028393:CDS | 35.0% | |
| GTTTCATGACCCAAATACAT+TGG | + | chr4.2:18505222-18505241 | MS.gene028393:CDS | 35.0% | |
| TGTTGACCTTTAATGTGCTA+AGG | - | chr4.2:18504409-18504428 | None:intergenic | 35.0% | |
| TTATGCTTAGACGCATCAAT+TGG | + | chr4.2:18505416-18505435 | MS.gene028393:CDS | 35.0% | |
| TTGCCAAATCGAGTTTCAAT+AGG | + | chr4.2:18505518-18505537 | MS.gene028393:CDS | 35.0% | |
| TTTAATGTGCTAAGGTTGCT+TGG | - | chr4.2:18504401-18504420 | None:intergenic | 35.0% | |
| ! | AATTTTCTGTTTGTGGAGGA+AGG | + | chr4.2:18504557-18504576 | MS.gene028393:CDS | 35.0% |
| ! | CTTCTGCATTCTGGAAATTA+TGG | + | chr4.2:18504788-18504807 | MS.gene028393:CDS | 35.0% |
| ! | GAGGATGAATTTTCTGTTTG+TGG | + | chr4.2:18504550-18504569 | MS.gene028393:CDS | 35.0% |
| ! | GATGAATTTTCTGTTTGTGG+AGG | + | chr4.2:18504553-18504572 | MS.gene028393:CDS | 35.0% |
| ! | GCAAGTCAATTAAGAGGTAT+GGG | + | chr4.2:18505389-18505408 | MS.gene028393:CDS | 35.0% |
| ! | GTAAAGTTTTTGTGGATGCT+GGG | + | chr4.2:18505578-18505597 | MS.gene028393:CDS | 35.0% |
| ! | TAAAGTTTTTGTGGATGCTG+GGG | + | chr4.2:18505579-18505598 | MS.gene028393:CDS | 35.0% |
| !! | AGGAGATTTGGTGATAAACT+TGG | + | chr4.2:18504134-18504153 | MS.gene028393:CDS | 35.0% |
| !! | CCTCATTTTGATGAGAGAAT+GGG | + | chr4.2:18504497-18504516 | MS.gene028393:CDS | 35.0% |
| !! | TCCTCATTTTGATGAGAGAA+TGG | + | chr4.2:18504496-18504515 | MS.gene028393:CDS | 35.0% |
| AAATCGTTTGACTGGATGTG+CGG | + | chr4.2:18505324-18505343 | MS.gene028393:CDS | 40.0% | |
| AAATGACTTCTCTCATCCCA+AGG | + | chr4.2:18505270-18505289 | MS.gene028393:CDS | 40.0% | |
| AACAGGAGCAGAAGAAACTA+AGG | + | chr4.2:18504948-18504967 | MS.gene028393:CDS | 40.0% | |
| AAGAAGGAACGTAGGAGATT+TGG | + | chr4.2:18504122-18504141 | MS.gene028393:CDS | 40.0% | |
| ACACACTTGTCTCACTTTAC+AGG | + | chr4.2:18505245-18505264 | MS.gene028393:CDS | 40.0% | |
| ACCTATCAAGCCAACTAAAC+AGG | + | chr4.2:18504931-18504950 | MS.gene028393:CDS | 40.0% | |
| ATTAGTGTTGTCGTGGTTGA+AGG | + | chr4.2:18505361-18505380 | MS.gene028393:CDS | 40.0% | |
| CACACTTGTCTCACTTTACA+GGG | + | chr4.2:18505246-18505265 | MS.gene028393:CDS | 40.0% | |
| CCAATAAATGTGTTCTGGTG+TGG | + | chr4.2:18505485-18505504 | MS.gene028393:CDS | 40.0% | |
| CCACACCAGAACACATTTAT+TGG | - | chr4.2:18505488-18505507 | None:intergenic | 40.0% | |
| CCCATTCTCTCATCAAAATG+AGG | - | chr4.2:18504500-18504519 | None:intergenic | 40.0% | |
| CGATGCCAATAAATGTGTTC+TGG | + | chr4.2:18505480-18505499 | MS.gene028393:CDS | 40.0% | |
| GCTCAACAAAATCGTTTGAC+TGG | + | chr4.2:18505316-18505335 | MS.gene028393:CDS | 40.0% | |
| GGACGTGAAATAGATGAACA+TGG | + | chr4.2:18504353-18504372 | MS.gene028393:CDS | 40.0% | |
| GTGGAAGCAAGTCAATTAAG+AGG | + | chr4.2:18505383-18505402 | MS.gene028393:CDS | 40.0% | |
| TAGAGAATATAGCGAGGATC+GGG | + | chr4.2:18504058-18504077 | MS.gene028393:CDS | 40.0% | |
| TAGTAGTGATGCCTTAGCAA+AGG | + | chr4.2:18504166-18504185 | MS.gene028393:CDS | 40.0% | |
| TCAACAAAACAAAGCTCCTG+CGG | + | chr4.2:18504522-18504541 | MS.gene028393:CDS | 40.0% | |
| TCTATCTTTCCTCTTATGCG+AGG | - | chr4.2:18504042-18504061 | None:intergenic | 40.0% | |
| TGATGGTATTAGTGTTGTCG+TGG | + | chr4.2:18505354-18505373 | MS.gene028393:CDS | 40.0% | |
| TGTTTGTGGAGGAAGGAAAA+TGG | + | chr4.2:18504564-18504583 | MS.gene028393:CDS | 40.0% | |
| TTCATCTATAGTACCGTTGG+CGG | - | chr4.2:18504822-18504841 | None:intergenic | 40.0% | |
| TTCATCTATTTCACGTCCCT+GGG | - | chr4.2:18504351-18504370 | None:intergenic | 40.0% | |
| TTCTTCTGCTCCTGTTTAGT+TGG | - | chr4.2:18504944-18504963 | None:intergenic | 40.0% | |
| ! | AGCTGCTCGTAAAGTTTTTG+TGG | + | chr4.2:18505570-18505589 | MS.gene028393:CDS | 40.0% |
| ! | CGTAAAGTTTTTGTGGATGC+TGG | + | chr4.2:18505577-18505596 | MS.gene028393:CDS | 40.0% |
| ! | TCAGAAGAAAGCACACAGTT+GGG | + | chr4.2:18504263-18504282 | MS.gene028393:CDS | 40.0% |
| ! | TTCAGAAGAAAGCACACAGT+TGG | + | chr4.2:18504262-18504281 | MS.gene028393:CDS | 40.0% |
| !! | CTCATCTTGACCTTTGGTTT+TGG | - | chr4.2:18505040-18505059 | None:intergenic | 40.0% |
| !! | TACGTACTTCCTTTTCAAGC+CGG | - | chr4.2:18505108-18505127 | None:intergenic | 40.0% |
| !! | TAGGGTTTCTGAAGCAAAGA+AGG | + | chr4.2:18504106-18504125 | MS.gene028393:CDS | 40.0% |
| !! | TCCTGTTTAGTTGGCTTGAT+AGG | - | chr4.2:18504935-18504954 | None:intergenic | 40.0% |
| !! | TTAGTTGGCTTGATAGGTTG+AGG | - | chr4.2:18504929-18504948 | None:intergenic | 40.0% |
| !!! | ATCTTGACCTTTGGTTTTGG+CGG | - | chr4.2:18505037-18505056 | None:intergenic | 40.0% |
| AAAACTGAAGGACCCGATTC+CGG | + | chr4.2:18504742-18504761 | MS.gene028393:CDS | 45.0% | |
| AAAGAGAGGGTAGCAAAGGT+AGG | + | chr4.2:18503973-18503992 | MS.gene028393:CDS | 45.0% | |
| AAATGTGTTCTGGTGTGGCA+AGG | + | chr4.2:18505490-18505509 | MS.gene028393:CDS | 45.0% | |
| AACTTTACGAGCAGCTGCTT+CGG | - | chr4.2:18505566-18505585 | None:intergenic | 45.0% | |
| ACAGCATGGTCCCAATAATG+AGG | - | chr4.2:18505607-18505626 | None:intergenic | 45.0% | |
| ACCACTCAATATCCGGAATC+GGG | - | chr4.2:18504757-18504776 | None:intergenic | 45.0% | |
| ACGACAGGAGATGATTAGAG+AGG | + | chr4.2:18505000-18505019 | MS.gene028393:CDS | 45.0% | |
| AGCTCAAGCAAAAGAGCAGA+AGG | + | chr4.2:18504631-18504650 | MS.gene028393:CDS | 45.0% | |
| ATACGATGGAGACGAAAGAG+AGG | + | chr4.2:18503959-18503978 | MS.gene028393:CDS | 45.0% | |
| ATATAGCGAGGATCGGGAAT+TGG | + | chr4.2:18504064-18504083 | MS.gene028393:CDS | 45.0% | |
| ATCGAAGTGCGATGAAGAGA+TGG | + | chr4.2:18504001-18504020 | MS.gene028393:CDS | 45.0% | |
| ATGCTGGGGTTCCTCATTAT+TGG | + | chr4.2:18505593-18505612 | MS.gene028393:CDS | 45.0% | |
| CAAACAAGCACAGCTAGCAA+AGG | + | chr4.2:18504655-18504674 | MS.gene028393:CDS | 45.0% | |
| CACCACTCAATATCCGGAAT+CGG | - | chr4.2:18504758-18504777 | None:intergenic | 45.0% | |
| CATAGAACCGCCAAAACCAA+AGG | + | chr4.2:18505027-18505046 | MS.gene028393:CDS | 45.0% | |
| CGACAGGAGATGATTAGAGA+GGG | + | chr4.2:18505001-18505020 | MS.gene028393:CDS | 45.0% | |
| CTGAAGCAAAGAAGGAACGT+AGG | + | chr4.2:18504114-18504133 | MS.gene028393:CDS | 45.0% | |
| CTTTGCTAGCTGTGCTTGTT+TGG | - | chr4.2:18504657-18504676 | None:intergenic | 45.0% | |
| GATTCCGGATATTGAGTGGT+GGG | + | chr4.2:18504757-18504776 | MS.gene028393:CDS | 45.0% | |
| GCCAACGGTACTATAGATGA+AGG | + | chr4.2:18504821-18504840 | MS.gene028393:CDS | 45.0% | |
| GCCTTCATCTATAGTACCGT+TGG | - | chr4.2:18504825-18504844 | None:intergenic | 45.0% | |
| GTTCATCTATTTCACGTCCC+TGG | - | chr4.2:18504352-18504371 | None:intergenic | 45.0% | |
| TACGATGGAGACGAAAGAGA+GGG | + | chr4.2:18503960-18503979 | MS.gene028393:CDS | 45.0% | |
| TCAGGATCGACATCCAATAC+AGG | - | chr4.2:18504470-18504489 | None:intergenic | 45.0% | |
| TGCCTTAGCAAAGGCTAAGA+AGG | + | chr4.2:18504175-18504194 | MS.gene028393:CDS | 45.0% | |
| TGCTGGGGTTCCTCATTATT+GGG | + | chr4.2:18505594-18505613 | MS.gene028393:CDS | 45.0% | |
| ! | ACTAAGGACCCAAAAGCGTA+TGG | + | chr4.2:18504964-18504983 | MS.gene028393:CDS | 45.0% |
| ! | AGCCTTCTTAGCCTTTGCTA+AGG | - | chr4.2:18504180-18504199 | None:intergenic | 45.0% |
| ! | CTAAGGCATCACTACTAGAG+AGG | - | chr4.2:18504163-18504182 | None:intergenic | 45.0% |
| ! | CTCCTTAGCCATACGCTTTT+GGG | - | chr4.2:18504975-18504994 | None:intergenic | 45.0% |
| ! | TCTCCTTAGCCATACGCTTT+TGG | - | chr4.2:18504976-18504995 | None:intergenic | 45.0% |
| ! | TTTCTGAGGGACAGTAACGT+CGG | - | chr4.2:18504297-18504316 | None:intergenic | 45.0% |
| !! | ACGTACTTCCTTTTCAAGCC+GGG | - | chr4.2:18505107-18505126 | None:intergenic | 45.0% |
| AAGACGAAGAACAGGAGCCT+TGG | - | chr4.2:18504324-18504343 | None:intergenic | 50.0% | |
| AAGCAACTCAAGATCCCACC+CGG | + | chr4.2:18505086-18505105 | MS.gene028393:CDS | 50.0% | |
| AATTCATCCTCTTAGGCCGC+AGG | - | chr4.2:18504541-18504560 | None:intergenic | 50.0% | |
| ACCCGATTCCGGATATTGAG+TGG | + | chr4.2:18504753-18504772 | MS.gene028393:CDS | 50.0% | |
| ACGTCCCACCACTCAATATC+CGG | - | chr4.2:18504764-18504783 | None:intergenic | 50.0% | |
| AGCACAGCTAGCAAAGGCAA+AGG | + | chr4.2:18504661-18504680 | MS.gene028393:CDS | 50.0% | |
| AGCTGCGTGAGAAGAAGGAA+AGG | + | chr4.2:18505194-18505213 | MS.gene028393:CDS | 50.0% | |
| AGTGTTGTCGTGGTTGAAGG+TGG | + | chr4.2:18505364-18505383 | MS.gene028393:CDS | 50.0% | |
| ATAAACTGTAGAGCGGGCCT+TGG | - | chr4.2:18505290-18505309 | None:intergenic | 50.0% | |
| CGATTCCGGATATTGAGTGG+TGG | + | chr4.2:18504756-18504775 | MS.gene028393:CDS | 50.0% | |
| CTCGATACTCCTCGCATAAG+AGG | + | chr4.2:18504030-18504049 | MS.gene028393:CDS | 50.0% | |
| GAAGTGCGATGAAGAGATGG+AGG | + | chr4.2:18504004-18504023 | MS.gene028393:CDS | 50.0% | |
| GACGAAAGAGAGGGTAGCAA+AGG | + | chr4.2:18503969-18503988 | MS.gene028393:CDS | 50.0% | |
| GTGAGCAGGCTCACATAGAT+AGG | + | chr4.2:18505143-18505162 | MS.gene028393:CDS | 50.0% | |
| TAAACTGTAGAGCGGGCCTT+GGG | - | chr4.2:18505289-18505308 | None:intergenic | 50.0% | |
| TATGGTGACATTGCCGCCAA+CGG | + | chr4.2:18504806-18504825 | MS.gene028393:CDS | 50.0% | |
| TGTCCCTCAGAAACCAACCA+AGG | + | chr4.2:18504304-18504323 | MS.gene028393:CDS | 50.0% | |
| ! | GACCCAAAAGCGTATGGCTA+AGG | + | chr4.2:18504970-18504989 | MS.gene028393:CDS | 50.0% |
| ! | GGATGTGCGGTGATTTGTGA+TGG | + | chr4.2:18505337-18505356 | MS.gene028393:CDS | 50.0% |
| ! | TTCTGAGGGACAGTAACGTC+GGG | - | chr4.2:18504296-18504315 | None:intergenic | 50.0% |
| ! | TTGATAGGTTGAGGTGGTGG+AGG | - | chr4.2:18504920-18504939 | None:intergenic | 50.0% |
| !! | ACTTCCTTTTCAAGCCGGGT+GGG | - | chr4.2:18505103-18505122 | None:intergenic | 50.0% |
| !! | GAGCCTTGGTTGGTTTCTGA+GGG | - | chr4.2:18504310-18504329 | None:intergenic | 50.0% |
| !! | GTTGGCTTGATAGGTTGAGG+TGG | - | chr4.2:18504926-18504945 | None:intergenic | 50.0% |
| !! | TACTTCCTTTTCAAGCCGGG+TGG | - | chr4.2:18505104-18505123 | None:intergenic | 50.0% |
| !! | TGATAGGTTGAGGTGGTGGA+GGG | - | chr4.2:18504919-18504938 | None:intergenic | 50.0% |
| CGAAGAACAGGAGCCTTGGT+TGG | - | chr4.2:18504320-18504339 | None:intergenic | 55.0% | |
| GACGTGGCACTTCTGCATTC+TGG | + | chr4.2:18504779-18504798 | MS.gene028393:CDS | 55.0% | |
| GTTCTTCGTCTTGACGCCCA+GGG | + | chr4.2:18504332-18504351 | MS.gene028393:CDS | 55.0% | |
| TGCTGAGCTGCGTGAGAAGA+AGG | + | chr4.2:18505189-18505208 | MS.gene028393:CDS | 55.0% | |
| TGGGCGTCAAGACGAAGAAC+AGG | - | chr4.2:18504332-18504351 | None:intergenic | 55.0% | |
| TGTTCTTCGTCTTGACGCCC+AGG | + | chr4.2:18504331-18504350 | MS.gene028393:CDS | 55.0% | |
| TTCTTCTCACGCAGCTCAGC+AGG | - | chr4.2:18505190-18505209 | None:intergenic | 55.0% | |
| ! | AGATCCCACCCGGCTTGAAA+AGG | + | chr4.2:18505096-18505115 | MS.gene028393:CDS | 55.0% |
| ! | GGATATTGAGTGGTGGGACG+TGG | + | chr4.2:18504763-18504782 | MS.gene028393:CDS | 55.0% |
| ! | GGCTAAGGAGAAAGCACGAC+AGG | + | chr4.2:18504985-18505004 | MS.gene028393:CDS | 55.0% |
| ! | GGCTTGATAGGTTGAGGTGG+TGG | - | chr4.2:18504923-18504942 | None:intergenic | 55.0% |
| !! | GATAGGTTGAGGTGGTGGAG+GGG | - | chr4.2:18504918-18504937 | None:intergenic | 55.0% |
| !! | GGAGCCTTGGTTGGTTTCTG+AGG | - | chr4.2:18504311-18504330 | None:intergenic | 55.0% |
| CAAAGCTCCTGCGGCCTAAG+AGG | + | chr4.2:18504531-18504550 | MS.gene028393:CDS | 60.0% | |
| GGCTCAGCAGGCGGTTCAAT+AGG | - | chr4.2:18504893-18504912 | None:intergenic | 60.0% | |
| GCAGGCGGTTCAATAGGCCG+AGG | - | chr4.2:18504887-18504906 | None:intergenic | 65.0% | |
| TGCAGCTGCTGAGCGTGAGC+AGG | + | chr4.2:18505129-18505148 | MS.gene028393:CDS | 65.0% | |
| !! | AGGTTGAGGTGGTGGAGGGG+CGG | - | chr4.2:18504915-18504934 | None:intergenic | 65.0% |
| !! | GGTTGAGGTGGTGGAGGGGC+GGG | - | chr4.2:18504914-18504933 | None:intergenic | 70.0% |
| !! | GGAGGGGCGGGCTCAGCAGG+CGG | - | chr4.2:18504902-18504921 | None:intergenic | 80.0% |
| !! | GGTGGAGGGGCGGGCTCAGC+AGG | - | chr4.2:18504905-18504924 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 18503954 | 18505654 | 18503954 | ID=MS.gene028393 |
| chr4.2 | mRNA | 18503954 | 18505654 | 18503954 | ID=MS.gene028393.t1;Parent=MS.gene028393 |
| chr4.2 | exon | 18503954 | 18505654 | 18503954 | ID=MS.gene028393.t1.exon1;Parent=MS.gene028393.t1 |
| chr4.2 | CDS | 18503954 | 18505654 | 18503954 | ID=cds.MS.gene028393.t1;Parent=MS.gene028393.t1 |
| Gene Sequence |
| Protein sequence |
