AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48652


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48652.t1 MTR_1g115920 92.576 458 30 2 163 617 378 834 0.0 788
MS.gene48652.t1 MTR_1g115920 83.871 124 11 4 1 118 26 146 6.84e-50 186
MS.gene48652.t1 MTR_1g115920 78.947 57 9 1 117 170 241 297 2.72e-11 67.0
MS.gene48652.t1 MTR_4g094355 83.704 270 20 4 75 344 6 251 9.80e-139 411
MS.gene48652.t1 MTR_4g094355 93.194 191 13 0 427 617 250 440 3.63e-123 371
MS.gene48652.t1 MTR_5g039050 84.753 223 25 3 307 529 67 280 1.94e-113 346
MS.gene48652.t1 MTR_5g039050 82.222 45 7 1 169 212 6 50 1.52e-14 76.6
MS.gene48652.t1 MTR_5g039100 70.093 107 20 4 15 118 7 104 1.38e-30 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48652.t1 AT1G28060 66.813 455 145 3 163 614 335 786 0.0 602
MS.gene48652.t1 AT1G28060 66.813 455 145 3 163 614 335 786 0.0 602
MS.gene48652.t1 AT1G28060 66.813 455 145 3 163 614 335 786 0.0 602
MS.gene48652.t1 AT3G55930 61.852 270 99 3 344 611 3 270 8.38e-98 300

Find 159 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACACAAGAACACATTTAT+TGG 0.135860 4.3:+67675722 None:intergenic
ACAAGTTTGTCCAATGTATT+TGG 0.138799 4.3:+67675975 None:intergenic
ATAAAATTGAAGAGTAAATT+TGG 0.190886 4.3:-67676602 MS.gene48652:CDS
TGCTGGGGTTCCTCATTATT+GGG 0.233213 4.3:-67675613 MS.gene48652:CDS
AATTGGATGATAAGAGAATT+AGG 0.237950 4.3:-67677126 MS.gene48652:CDS
ATGCTGGGGTTCCTCATTAT+TGG 0.242299 4.3:-67675614 MS.gene48652:CDS
ACAAACTTGTCTCACTTTAC+AGG 0.244618 4.3:-67675962 MS.gene48652:CDS
CTTCTGCATTCTGGAAATTA+TGG 0.253483 4.3:-67676419 MS.gene48652:CDS
CCCTGTCTCTGCTTCCTTCT+CGG 0.262332 4.3:+67677281 None:intergenic
CTCATCTTGACCTTTGGTTT+TGG 0.279974 4.3:+67676170 None:intergenic
AGGAAGCAGAGACAGGGATA+TGG 0.287407 4.3:-67677275 MS.gene48652:CDS
CTTTGCTAGCTGTGCTTGTT+TGG 0.291419 4.3:+67676553 None:intergenic
CTCGGTCTTCTCTGTGATTC+CGG 0.301582 4.3:+67677299 None:intergenic
TCCTGTTTAGTTGGCTTGAT+AGG 0.304342 4.3:+67676275 None:intergenic
TCACCTTAGCTATACGCCTT+TGG 0.310566 4.3:+67676234 None:intergenic
ATTAAGTTCGGATTGATATC+AGG 0.315138 4.3:+67676518 None:intergenic
CACCTTAGCTATACGCCTTT+GGG 0.317473 4.3:+67676235 None:intergenic
AAGCAACCTTAGCACATTAA+AGG 0.318390 4.3:-67676807 MS.gene48652:CDS
TTCTTCTGCTCCTGTTTAGT+TGG 0.318787 4.3:+67676266 None:intergenic
GACATGGCACTTCTGCATTC+TGG 0.331029 4.3:-67676428 MS.gene48652:CDS
CATCAGAATCGTGCCGGTTC+CGG 0.331455 4.3:+67677344 None:intergenic
GTTCATCTATTTCACGTCCC+TGG 0.343803 4.3:+67676858 None:intergenic
GGTGGAGAGGCGGGCTCAGC+AGG 0.346160 4.3:+67676305 None:intergenic
ATGATAAGAGAATTAGGGTT+AGG 0.350518 4.3:-67677120 MS.gene48652:CDS
TGAAATACTAAAACCTGTAT+TGG 0.355353 4.3:-67676753 MS.gene48652:CDS
GAACCTATTGAAGCTCGATT+TGG 0.361063 4.3:+67675686 None:intergenic
AGATGAAGGCAATATGAAAA+TGG 0.363556 4.3:-67676372 MS.gene48652:CDS
TGCAGCTGCTGAGCGTGAGC+AGG 0.369144 4.3:-67676078 MS.gene48652:CDS
AAGAAGGAACGTAGGAGATT+TGG 0.374683 4.3:-67677085 MS.gene48652:CDS
AAATTACTCATCTTGACCTT+TGG 0.381357 4.3:+67676164 None:intergenic
ACCGTAACCATCACCGGAAC+CGG 0.388029 4.3:-67677357 MS.gene48652:CDS
ATTGGATGATAAGAGAATTA+GGG 0.389557 4.3:-67677125 MS.gene48652:CDS
TGTTTGTGGAGGAAGGAAAA+TGG 0.392737 4.3:-67676643 MS.gene48652:CDS
TCTGTAATTTCTATTAAGTT+CGG 0.393587 4.3:+67676506 None:intergenic
AGCAAGTCAATTAAGAGGTA+TGG 0.404160 4.3:-67675819 MS.gene48652:CDS
CAAGTTTGTCCAATGTATTT+GGG 0.405319 4.3:+67675976 None:intergenic
TTCTTCTCACGCAGCTCAGC+AGG 0.405655 4.3:+67676020 None:intergenic
TTGCCAAATCGAGCTTCAAT+AGG 0.406342 4.3:-67675689 MS.gene48652:CDS
TCAAAATGAGGATTAGATTC+AGG 0.407433 4.3:+67676722 None:intergenic
ACCTATCAAGCCAACTAAAC+AGG 0.413749 4.3:-67676276 MS.gene48652:CDS
TTCATCTATTTCACGTCCCT+GGG 0.414957 4.3:+67676859 None:intergenic
ATAAACTCTAGAGCGGGCCT+TGG 0.420863 4.3:+67675920 None:intergenic
CTCGATACTCCTCGCATAAG+AGG 0.421449 4.3:-67677180 MS.gene48652:CDS
ATATAGCGATGATCGGGAAT+TGG 0.423849 4.3:-67677143 MS.gene48652:CDS
ACCGAGAAGGAAGCAGAGAC+AGG 0.430015 4.3:-67677282 MS.gene48652:CDS
TTTAATGTGCTAAGGTTGCT+TGG 0.430099 4.3:+67676809 None:intergenic
CACCACTCAATATCCGGAAT+CGG 0.431295 4.3:+67676452 None:intergenic
GGAAGCAGAGACAGGGATAT+GGG 0.431480 4.3:-67677274 MS.gene48652:CDS
GGCTCAGCAGGCGGTTCAAT+AGG 0.433119 4.3:+67676317 None:intergenic
CAAAGCTCCTGCGGCCTAAG+AGG 0.436122 4.3:-67676676 MS.gene48652:CDS
TGTTCTTCGTCTTGACGCCC+AGG 0.441585 4.3:-67676876 MS.gene48652:CDS
GTTACGGTCGCGGTCATGTT+CGG 0.446270 4.3:+67677372 None:intergenic
ATGTCCCACCACTCAATATC+CGG 0.449028 4.3:+67676446 None:intergenic
AACAGAAAATTCATCCTCTT+AGG 0.449563 4.3:+67676662 None:intergenic
AAAACTGAAGGACCCGATTC+CGG 0.455391 4.3:-67676465 MS.gene48652:CDS
TGATAAGAGAATTAGGGTTA+GGG 0.455771 4.3:-67677119 MS.gene48652:CDS
GCCGGTTCCGGTGATGGTTA+CGG 0.466812 4.3:+67677356 None:intergenic
TCCGGTGATGGTTACGGTCG+CGG 0.470181 4.3:+67677362 None:intergenic
TGCTGAGCTGCGTGAGAAGA+AGG 0.474449 4.3:-67676018 MS.gene48652:CDS
AGATCCCACCCGGCTTGAAA+AGG 0.474598 4.3:-67676111 MS.gene48652:CDS
CATTTGTATAGTTGACAGCT+TGG 0.476752 4.3:+67675589 None:intergenic
GGTTGAGGTGGTGGAGAGGC+GGG 0.476862 4.3:+67676296 None:intergenic
GTTAGCGTTGTCGTGGTTGA+AGG 0.477825 4.3:-67675846 MS.gene48652:CDS
AATCGTGCCGGTTCCGGTGA+TGG 0.479993 4.3:+67677350 None:intergenic
AGGAGATTTGGTGATAAACT+TGG 0.481118 4.3:-67677073 MS.gene48652:CDS
GTGAGCAGGCTCACATAGAT+AGG 0.485650 4.3:-67676064 MS.gene48652:CDS
GCTCAACAAAATCGTTTGAC+TGG 0.491510 4.3:-67675891 MS.gene48652:CDS
TAGGGTTTCTGAAGCAAAGA+AGG 0.491982 4.3:-67677101 MS.gene48652:CDS
TTCAGAAGAAAGCACACAGT+TGG 0.492012 4.3:-67676945 MS.gene48652:CDS
AGAAGAATATAGCGATGATC+GGG 0.497936 4.3:-67677149 MS.gene48652:CDS
AGTAATTTACATAAGGTGCT+AGG 0.498879 4.3:-67676149 MS.gene48652:CDS
TGGGCGTCAAGACGAAGAAC+AGG 0.500740 4.3:+67676878 None:intergenic
TCAGGATCGACATCCAATAC+AGG 0.501479 4.3:+67676740 None:intergenic
CAAACTTGTCTCACTTTACA+GGG 0.502069 4.3:-67675961 MS.gene48652:CDS
CAAGATGAGTAATTTACATA+AGG 0.502552 4.3:-67676156 MS.gene48652:CDS
AGGTTGAGGTGGTGGAGAGG+CGG 0.504638 4.3:+67676295 None:intergenic
GCCTTCATCTATAGTACCGT+TGG 0.504964 4.3:+67676385 None:intergenic
GGAGCCTTGGTTGGTTTCTG+AGG 0.506975 4.3:+67676899 None:intergenic
TGCCTTAGCAAAGGCTAAGA+AGG 0.507867 4.3:-67677032 MS.gene48652:CDS
ACCACTCAATATCCGGAATC+GGG 0.511345 4.3:+67676453 None:intergenic
GCAAGTCAATTAAGAGGTAT+GGG 0.512247 4.3:-67675818 MS.gene48652:CDS
TCAGAAGAAAGCACACAGTT+GGG 0.515196 4.3:-67676944 MS.gene48652:CDS
TAAACTCTAGAGCGGGCCTT+GGG 0.515382 4.3:+67675921 None:intergenic
CGAAGAACAGGAGCCTTGGT+TGG 0.517067 4.3:+67676890 None:intergenic
TTATGCTTAGACGTATCAAA+TGG 0.519358 4.3:-67675791 MS.gene48652:CDS
GTGGAAGCAAGTCAATTAAG+AGG 0.522404 4.3:-67675824 MS.gene48652:CDS
GGCTTGATAGGTTGAGGTGG+TGG 0.526396 4.3:+67676287 None:intergenic
ATCGAAGCGCGATGAAGAGA+GGG 0.529353 4.3:-67677209 MS.gene48652:CDS
GTTTGATGACCCAAATACAT+TGG 0.529532 4.3:-67675985 MS.gene48652:CDS
ACTTTCATGTGGAACATCCT+CGG 0.530971 4.3:-67676340 MS.gene48652:CDS
GAGCCTTGGTTGGTTTCTGA+GGG 0.533893 4.3:+67676900 None:intergenic
GACCCAAAGGCGTATAGCTA+AGG 0.534462 4.3:-67676237 MS.gene48652:CDS
AGCTCAAGCAAAAGAGCAGA+AGG 0.535132 4.3:-67676576 MS.gene48652:CDS
GAGAAGAATATAGCGATGAT+CGG 0.536885 4.3:-67677150 MS.gene48652:CDS
ACCGCGACCGTAACCATCAC+CGG 0.538461 4.3:-67677363 MS.gene48652:CDS
CCCATTCTCTCATCAAAATG+AGG 0.549338 4.3:+67676710 None:intergenic
CAAACAAGCACAGCTAGCAA+AGG 0.555686 4.3:-67676552 MS.gene48652:CDS
TTCTGAGGGACAGTAACGTC+GGG 0.556866 4.3:+67676914 None:intergenic
AAGACGAAGAACAGGAGCCT+TGG 0.557281 4.3:+67676886 None:intergenic
TTCATCTATAGTACCGTTGG+CGG 0.558630 4.3:+67676388 None:intergenic
AATCGAAGCGCGATGAAGAG+AGG 0.561052 4.3:-67677210 MS.gene48652:CDS
GACGAAAGAGAGGGTAGCAA+AGG 0.561832 4.3:-67677241 MS.gene48652:CDS
GGAGAGGCGGGCTCAGCAGG+CGG 0.561936 4.3:+67676308 None:intergenic
TGTTGACCTTTAATGTGCTA+AGG 0.561959 4.3:+67676801 None:intergenic
GTTCTTCGTCTTGACGCCCA+GGG 0.562372 4.3:-67676875 MS.gene48652:CDS
AATTCATCCTCTTAGGCCGC+AGG 0.563858 4.3:+67676669 None:intergenic
GTAATTTACATAAGGTGCTA+GGG 0.564338 4.3:-67676148 MS.gene48652:CDS
GGATATTGAGTGGTGGGACA+TGG 0.570746 4.3:-67676444 MS.gene48652:CDS
TTAGTTGGCTTGATAGGTTG+AGG 0.576255 4.3:+67676281 None:intergenic
GGAAGAATTCAACTTTCATG+TGG 0.576369 4.3:-67676351 MS.gene48652:CDS
AGCCTTCTTAGCCTTTGCTA+AGG 0.581971 4.3:+67677030 None:intergenic
GGTCAGATCGATGATGGCGG+TGG 0.582301 4.3:+67677320 None:intergenic
CCGAGAAGGAAGCAGAGACA+GGG 0.584656 4.3:-67677281 MS.gene48652:CDS
GTTGGCTTGATAGGTTGAGG+TGG 0.586185 4.3:+67676284 None:intergenic
GCCAACGGTACTATAGATGA+AGG 0.586217 4.3:-67676386 MS.gene48652:CDS
CTAAGGCATCACTACTAGAG+AGG 0.588190 4.3:+67677047 None:intergenic
GATTCCGGTCAGATCGATGA+TGG 0.589596 4.3:+67677314 None:intergenic
ATTAACATAAACTCTAGAGC+GGG 0.591581 4.3:+67675914 None:intergenic
TGCTTAGACGTATCAAATGG+AGG 0.592616 4.3:-67675788 MS.gene48652:CDS
AAAGAGAGGGTAGCAAAGGT+AGG 0.594676 4.3:-67677237 MS.gene48652:CDS
TATGGTGACATTGCCGCCAA+CGG 0.595136 4.3:-67676401 MS.gene48652:CDS
GGATGTGCGGTGATTTGTGA+TGG 0.599326 4.3:-67675870 MS.gene48652:CDS
TCTATCTTTCCTCTTATGCG+AGG 0.606208 4.3:+67677171 None:intergenic
GACAGGGATATGGGATACGA+TGG 0.607091 4.3:-67677265 MS.gene48652:CDS
GGTGGTCATCAGAATCGTGC+CGG 0.608684 4.3:+67677338 None:intergenic
ACCGCCATCATCGATCTGAC+CGG 0.610844 4.3:-67677318 MS.gene48652:CDS
GCTTAGACGTATCAAATGGA+GGG 0.611542 4.3:-67675787 MS.gene48652:CDS
CGATTCCGGATATTGAGTGG+TGG 0.614030 4.3:-67676451 MS.gene48652:CDS
TGATGGTGTTAGCGTTGTCG+TGG 0.615588 4.3:-67675853 MS.gene48652:CDS
AAATGACCTCTCTCATCCCA+AGG 0.616566 4.3:-67675937 MS.gene48652:CDS
TGTAATGAAAGCAAAACTGA+AGG 0.617069 4.3:-67676477 MS.gene48652:CDS
ACAGCTTGGTCCCAATAATG+AGG 0.617442 4.3:+67675603 None:intergenic
GAATTTGAGTTATTCAACTG+AGG 0.620565 4.3:+67676965 None:intergenic
TAGTAGTGATGCCTTAGCAA+AGG 0.620911 4.3:-67677041 MS.gene48652:CDS
AGCGTTGTCGTGGTTGAAGG+TGG 0.623840 4.3:-67675843 MS.gene48652:CDS
ATACGATGGAGACGAAAGAG+AGG 0.628066 4.3:-67677251 MS.gene48652:CDS
GCAGGCGGTTCAATAGGCCG+AGG 0.628346 4.3:+67676323 None:intergenic
CATAGAACCGCCAAAACCAA+AGG 0.629032 4.3:-67676180 MS.gene48652:CDS
GATTCCGGATATTGAGTGGT+GGG 0.629362 4.3:-67676450 MS.gene48652:CDS
CGACAGGAGATGATTAGACA+TGG 0.631416 4.3:-67676206 MS.gene48652:CDS
CCAATAAATGTGTTCTTGTG+TGG 0.635554 4.3:-67675722 MS.gene48652:CDS
AAATGTGTTCTTGTGTGGCA+AGG 0.639668 4.3:-67675717 MS.gene48652:CDS
GATAGGTTGAGGTGGTGGAG+AGG 0.641107 4.3:+67676292 None:intergenic
TTTCTGAGGGACAGTAACGT+CGG 0.642738 4.3:+67676913 None:intergenic
ACCCGATTCCGGATATTGAG+TGG 0.647460 4.3:-67676454 MS.gene48652:CDS
AGCGGGCCTTGGGATGAGAG+AGG 0.647591 4.3:+67675931 None:intergenic
AGAAGAAACTAAAGACCCAA+AGG 0.655642 4.3:-67676250 MS.gene48652:CDS
GGACGTGAAATAGATGAACA+TGG 0.655823 4.3:-67676854 MS.gene48652:CDS
ACGAGAGAGACAAATACGAT+AGG 0.661747 4.3:-67677402 MS.gene48652:CDS
GAAGCGCGATGAAGAGAGGG+AGG 0.664190 4.3:-67677206 MS.gene48652:CDS
AATCACAGAGAAGACCGAGA+AGG 0.670001 4.3:-67677295 MS.gene48652:CDS
TACGATGGAGACGAAAGAGA+GGG 0.671943 4.3:-67677250 MS.gene48652:CDS
CTGAAGCAAAGAAGGAACGT+AGG 0.673233 4.3:-67677093 MS.gene48652:CDS
CATTAACATAAACTCTAGAG+CGG 0.690364 4.3:+67675913 None:intergenic
AAATCGTTTGACTGGATGTG+CGG 0.693768 4.3:-67675883 MS.gene48652:CDS
TCGACAAAACAAAGCTCCTG+CGG 0.696622 4.3:-67676685 MS.gene48652:CDS
TCCGGTCAGATCGATGATGG+CGG 0.696675 4.3:+67677317 None:intergenic
AAGCAACTCAAGATCCCACC+CGG 0.703568 4.3:-67676121 MS.gene48652:CDS
TGTCCCTCAGAAACCAACCA+AGG 0.741969 4.3:-67676903 MS.gene48652:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATTGAAGAGTAAATT+TGG - chr4.3:67676379-67676398 MS.gene48652:CDS 15.0%
!! TCTGTAATTTCTATTAAGTT+CGG + chr4.3:67676478-67676497 None:intergenic 20.0%
! AATTGGATGATAAGAGAATT+AGG - chr4.3:67675855-67675874 MS.gene48652:CDS 25.0%
! ATTGGATGATAAGAGAATTA+GGG - chr4.3:67675856-67675875 MS.gene48652:CDS 25.0%
! CAAGATGAGTAATTTACATA+AGG - chr4.3:67676825-67676844 MS.gene48652:CDS 25.0%
! TGAAATACTAAAACCTGTAT+TGG - chr4.3:67676228-67676247 MS.gene48652:CDS 25.0%
AAATTACTCATCTTGACCTT+TGG + chr4.3:67676820-67676839 None:intergenic 30.0%
AACAGAAAATTCATCCTCTT+AGG + chr4.3:67676322-67676341 None:intergenic 30.0%
ACAAGTTTGTCCAATGTATT+TGG + chr4.3:67677009-67677028 None:intergenic 30.0%
AGATGAAGGCAATATGAAAA+TGG - chr4.3:67676609-67676628 MS.gene48652:CDS 30.0%
ATGATAAGAGAATTAGGGTT+AGG - chr4.3:67675861-67675880 MS.gene48652:CDS 30.0%
ATTAAGTTCGGATTGATATC+AGG + chr4.3:67676466-67676485 None:intergenic 30.0%
CAAGTTTGTCCAATGTATTT+GGG + chr4.3:67677008-67677027 None:intergenic 30.0%
TCAAAATGAGGATTAGATTC+AGG + chr4.3:67676262-67676281 None:intergenic 30.0%
TGATAAGAGAATTAGGGTTA+GGG - chr4.3:67675862-67675881 MS.gene48652:CDS 30.0%
TGTAATGAAAGCAAAACTGA+AGG - chr4.3:67676504-67676523 MS.gene48652:CDS 30.0%
TTATGCTTAGACGTATCAAA+TGG - chr4.3:67677190-67677209 MS.gene48652:CDS 30.0%
! AGTAATTTACATAAGGTGCT+AGG - chr4.3:67676832-67676851 MS.gene48652:CDS 30.0%
! CATTAACATAAACTCTAGAG+CGG + chr4.3:67677071-67677090 None:intergenic 30.0%
! GAATTTGAGTTATTCAACTG+AGG + chr4.3:67676019-67676038 None:intergenic 30.0%
! GTAATTTACATAAGGTGCTA+GGG - chr4.3:67676833-67676852 MS.gene48652:CDS 30.0%
!! ATTAACATAAACTCTAGAGC+GGG + chr4.3:67677070-67677089 None:intergenic 30.0%
AAGCAACCTTAGCACATTAA+AGG - chr4.3:67676174-67676193 MS.gene48652:CDS 35.0%
ACAAACTTGTCTCACTTTAC+AGG - chr4.3:67677019-67677038 MS.gene48652:CDS 35.0%
AGAAGAAACTAAAGACCCAA+AGG - chr4.3:67676731-67676750 MS.gene48652:CDS 35.0%
AGAAGAATATAGCGATGATC+GGG - chr4.3:67675832-67675851 MS.gene48652:CDS 35.0%
AGCAAGTCAATTAAGAGGTA+TGG - chr4.3:67677162-67677181 MS.gene48652:CDS 35.0%
CAAACTTGTCTCACTTTACA+GGG - chr4.3:67677020-67677039 MS.gene48652:CDS 35.0%
CATTTGTATAGTTGACAGCT+TGG + chr4.3:67677395-67677414 None:intergenic 35.0%
CCAATAAATGTGTTCTTGTG+TGG - chr4.3:67677259-67677278 MS.gene48652:CDS 35.0%
CCACACAAGAACACATTTAT+TGG + chr4.3:67677262-67677281 None:intergenic 35.0%
GAGAAGAATATAGCGATGAT+CGG - chr4.3:67675831-67675850 MS.gene48652:CDS 35.0%
GGAAGAATTCAACTTTCATG+TGG - chr4.3:67676630-67676649 MS.gene48652:CDS 35.0%
TGTTGACCTTTAATGTGCTA+AGG + chr4.3:67676183-67676202 None:intergenic 35.0%
TTTAATGTGCTAAGGTTGCT+TGG + chr4.3:67676175-67676194 None:intergenic 35.0%
! AATTTTCTGTTTGTGGAGGA+AGG - chr4.3:67676331-67676350 MS.gene48652:CDS 35.0%
! CTTCTGCATTCTGGAAATTA+TGG - chr4.3:67676562-67676581 MS.gene48652:CDS 35.0%
! GAGGATGAATTTTCTGTTTG+TGG - chr4.3:67676324-67676343 MS.gene48652:CDS 35.0%
! GATGAATTTTCTGTTTGTGG+AGG - chr4.3:67676327-67676346 MS.gene48652:CDS 35.0%
! GCAAGTCAATTAAGAGGTAT+GGG - chr4.3:67677163-67677182 MS.gene48652:CDS 35.0%
! GTAAAGTTTTTGTGGATGCT+GGG - chr4.3:67677352-67677371 MS.gene48652:CDS 35.0%
! GTTTGATGACCCAAATACAT+TGG - chr4.3:67676996-67677015 MS.gene48652:CDS 35.0%
! TAAAGTTTTTGTGGATGCTG+GGG - chr4.3:67677353-67677372 MS.gene48652:CDS 35.0%
!! AGGAGATTTGGTGATAAACT+TGG - chr4.3:67675908-67675927 MS.gene48652:CDS 35.0%
!! CCTCATTTTGATGAGAGAAT+GGG - chr4.3:67676271-67676290 MS.gene48652:CDS 35.0%
!! TCCTCATTTTGATGAGAGAA+TGG - chr4.3:67676270-67676289 MS.gene48652:CDS 35.0%
AAATCGTTTGACTGGATGTG+CGG - chr4.3:67677098-67677117 MS.gene48652:CDS 40.0%
AAATGTGTTCTTGTGTGGCA+AGG - chr4.3:67677264-67677283 MS.gene48652:CDS 40.0%
AAGAAGGAACGTAGGAGATT+TGG - chr4.3:67675896-67675915 MS.gene48652:CDS 40.0%
ACCTATCAAGCCAACTAAAC+AGG - chr4.3:67676705-67676724 MS.gene48652:CDS 40.0%
ACGAGAGAGACAAATACGAT+AGG - chr4.3:67675579-67675598 MS.gene48652:CDS 40.0%
ACTTTCATGTGGAACATCCT+CGG - chr4.3:67676641-67676660 MS.gene48652:CDS 40.0%
ATATAGCGATGATCGGGAAT+TGG - chr4.3:67675838-67675857 MS.gene48652:CDS 40.0%
CCCATTCTCTCATCAAAATG+AGG + chr4.3:67676274-67676293 None:intergenic 40.0%
GAACCTATTGAAGCTCGATT+TGG + chr4.3:67677298-67677317 None:intergenic 40.0%
GCTCAACAAAATCGTTTGAC+TGG - chr4.3:67677090-67677109 MS.gene48652:CDS 40.0%
GCTTAGACGTATCAAATGGA+GGG - chr4.3:67677194-67677213 MS.gene48652:CDS 40.0%
GGACGTGAAATAGATGAACA+TGG - chr4.3:67676127-67676146 MS.gene48652:CDS 40.0%
GTGGAAGCAAGTCAATTAAG+AGG - chr4.3:67677157-67677176 MS.gene48652:CDS 40.0%
TAGTAGTGATGCCTTAGCAA+AGG - chr4.3:67675940-67675959 MS.gene48652:CDS 40.0%
TCTATCTTTCCTCTTATGCG+AGG + chr4.3:67675813-67675832 None:intergenic 40.0%
TGCTTAGACGTATCAAATGG+AGG - chr4.3:67677193-67677212 MS.gene48652:CDS 40.0%
TGTTTGTGGAGGAAGGAAAA+TGG - chr4.3:67676338-67676357 MS.gene48652:CDS 40.0%
TTCATCTATAGTACCGTTGG+CGG + chr4.3:67676596-67676615 None:intergenic 40.0%
TTCATCTATTTCACGTCCCT+GGG + chr4.3:67676125-67676144 None:intergenic 40.0%
TTCTTCTGCTCCTGTTTAGT+TGG + chr4.3:67676718-67676737 None:intergenic 40.0%
TTGCCAAATCGAGCTTCAAT+AGG - chr4.3:67677292-67677311 MS.gene48652:CDS 40.0%
! AGCTGCTCGTAAAGTTTTTG+TGG - chr4.3:67677344-67677363 MS.gene48652:CDS 40.0%
! CGTAAAGTTTTTGTGGATGC+TGG - chr4.3:67677351-67677370 MS.gene48652:CDS 40.0%
! TCAGAAGAAAGCACACAGTT+GGG - chr4.3:67676037-67676056 MS.gene48652:CDS 40.0%
! TTCAGAAGAAAGCACACAGT+TGG - chr4.3:67676036-67676055 MS.gene48652:CDS 40.0%
!! CTCATCTTGACCTTTGGTTT+TGG + chr4.3:67676814-67676833 None:intergenic 40.0%
!! TAGGGTTTCTGAAGCAAAGA+AGG - chr4.3:67675880-67675899 MS.gene48652:CDS 40.0%
!! TCCTGTTTAGTTGGCTTGAT+AGG + chr4.3:67676709-67676728 None:intergenic 40.0%
!! TTAGTTGGCTTGATAGGTTG+AGG + chr4.3:67676703-67676722 None:intergenic 40.0%
!!! ATCTTGACCTTTGGTTTTGG+CGG + chr4.3:67676811-67676830 None:intergenic 40.0%
AAAACTGAAGGACCCGATTC+CGG - chr4.3:67676516-67676535 MS.gene48652:CDS 45.0%
AAAGAGAGGGTAGCAAAGGT+AGG - chr4.3:67675744-67675763 MS.gene48652:CDS 45.0%
AAATGACCTCTCTCATCCCA+AGG - chr4.3:67677044-67677063 MS.gene48652:CDS 45.0%
AATCACAGAGAAGACCGAGA+AGG - chr4.3:67675686-67675705 MS.gene48652:CDS 45.0%
ACAGCTTGGTCCCAATAATG+AGG + chr4.3:67677381-67677400 None:intergenic 45.0%
ACCACTCAATATCCGGAATC+GGG + chr4.3:67676531-67676550 None:intergenic 45.0%
AGCTAAGGTGAAAAAGCGAC+AGG - chr4.3:67676759-67676778 MS.gene48652:CDS 45.0%
AGCTCAAGCAAAAGAGCAGA+AGG - chr4.3:67676405-67676424 MS.gene48652:CDS 45.0%
ATACGATGGAGACGAAAGAG+AGG - chr4.3:67675730-67675749 MS.gene48652:CDS 45.0%
ATGCTGGGGTTCCTCATTAT+TGG - chr4.3:67677367-67677386 MS.gene48652:CDS 45.0%
ATGTCCCACCACTCAATATC+CGG + chr4.3:67676538-67676557 None:intergenic 45.0%
CAAACAAGCACAGCTAGCAA+AGG - chr4.3:67676429-67676448 MS.gene48652:CDS 45.0%
CACCACTCAATATCCGGAAT+CGG + chr4.3:67676532-67676551 None:intergenic 45.0%
CACCTTAGCTATACGCCTTT+GGG + chr4.3:67676749-67676768 None:intergenic 45.0%
CATAGAACCGCCAAAACCAA+AGG - chr4.3:67676801-67676820 MS.gene48652:CDS 45.0%
CGACAGGAGATGATTAGACA+TGG - chr4.3:67676775-67676794 MS.gene48652:CDS 45.0%
CTGAAGCAAAGAAGGAACGT+AGG - chr4.3:67675888-67675907 MS.gene48652:CDS 45.0%
CTTTGCTAGCTGTGCTTGTT+TGG + chr4.3:67676431-67676450 None:intergenic 45.0%
GATTCCGGATATTGAGTGGT+GGG - chr4.3:67676531-67676550 MS.gene48652:CDS 45.0%
GCCAACGGTACTATAGATGA+AGG - chr4.3:67676595-67676614 MS.gene48652:CDS 45.0%
GCCTTCATCTATAGTACCGT+TGG + chr4.3:67676599-67676618 None:intergenic 45.0%
GTTCATCTATTTCACGTCCC+TGG + chr4.3:67676126-67676145 None:intergenic 45.0%
TACGATGGAGACGAAAGAGA+GGG - chr4.3:67675731-67675750 MS.gene48652:CDS 45.0%
TCACCTTAGCTATACGCCTT+TGG + chr4.3:67676750-67676769 None:intergenic 45.0%
TCAGGATCGACATCCAATAC+AGG + chr4.3:67676244-67676263 None:intergenic 45.0%
TCGACAAAACAAAGCTCCTG+CGG - chr4.3:67676296-67676315 MS.gene48652:CDS 45.0%
TGCCTTAGCAAAGGCTAAGA+AGG - chr4.3:67675949-67675968 MS.gene48652:CDS 45.0%
TGCTGGGGTTCCTCATTATT+GGG - chr4.3:67677368-67677387 MS.gene48652:CDS 45.0%
! AGCCTTCTTAGCCTTTGCTA+AGG + chr4.3:67675954-67675973 None:intergenic 45.0%
! CTAAGGCATCACTACTAGAG+AGG + chr4.3:67675937-67675956 None:intergenic 45.0%
! TTTCTGAGGGACAGTAACGT+CGG + chr4.3:67676071-67676090 None:intergenic 45.0%
!! ACGTACTTCCTTTTCAAGCC+GGG + chr4.3:67676881-67676900 None:intergenic 45.0%
!! GACGTACTTCCTTTTCAAGC+CGG + chr4.3:67676882-67676901 None:intergenic 45.0%
AAGACGAAGAACAGGAGCCT+TGG + chr4.3:67676098-67676117 None:intergenic 50.0%
AAGCAACTCAAGATCCCACC+CGG - chr4.3:67676860-67676879 MS.gene48652:CDS 50.0%
AATCGAAGCGCGATGAAGAG+AGG - chr4.3:67675771-67675790 MS.gene48652:CDS 50.0%
AATTCATCCTCTTAGGCCGC+AGG + chr4.3:67676315-67676334 None:intergenic 50.0%
ACCCGATTCCGGATATTGAG+TGG - chr4.3:67676527-67676546 MS.gene48652:CDS 50.0%
AGGAAGCAGAGACAGGGATA+TGG - chr4.3:67675706-67675725 MS.gene48652:CDS 50.0%
ATCGAAGCGCGATGAAGAGA+GGG - chr4.3:67675772-67675791 MS.gene48652:CDS 50.0%
CGATTCCGGATATTGAGTGG+TGG - chr4.3:67676530-67676549 MS.gene48652:CDS 50.0%
CTCGATACTCCTCGCATAAG+AGG - chr4.3:67675801-67675820 MS.gene48652:CDS 50.0%
CTCGGTCTTCTCTGTGATTC+CGG + chr4.3:67675685-67675704 None:intergenic 50.0%
GACAGGGATATGGGATACGA+TGG - chr4.3:67675716-67675735 MS.gene48652:CDS 50.0%
GACATGGCACTTCTGCATTC+TGG - chr4.3:67676553-67676572 MS.gene48652:CDS 50.0%
GACGAAAGAGAGGGTAGCAA+AGG - chr4.3:67675740-67675759 MS.gene48652:CDS 50.0%
GATTCCGGTCAGATCGATGA+TGG + chr4.3:67675670-67675689 None:intergenic 50.0%
GGAAGCAGAGACAGGGATAT+GGG - chr4.3:67675707-67675726 MS.gene48652:CDS 50.0%
GTGAGCAGGCTCACATAGAT+AGG - chr4.3:67676917-67676936 MS.gene48652:CDS 50.0%
GTTAGCGTTGTCGTGGTTGA+AGG - chr4.3:67677135-67677154 MS.gene48652:CDS 50.0%
TATGGTGACATTGCCGCCAA+CGG - chr4.3:67676580-67676599 MS.gene48652:CDS 50.0%
TGTCCCTCAGAAACCAACCA+AGG - chr4.3:67676078-67676097 MS.gene48652:CDS 50.0%
! GACCCAAAGGCGTATAGCTA+AGG - chr4.3:67676744-67676763 MS.gene48652:CDS 50.0%
! GGATATTGAGTGGTGGGACA+TGG - chr4.3:67676537-67676556 MS.gene48652:CDS 50.0%
! GGATGTGCGGTGATTTGTGA+TGG - chr4.3:67677111-67677130 MS.gene48652:CDS 50.0%
! TGATGGTGTTAGCGTTGTCG+TGG - chr4.3:67677128-67677147 MS.gene48652:CDS 50.0%
! TTCTGAGGGACAGTAACGTC+GGG + chr4.3:67676070-67676089 None:intergenic 50.0%
!! ACTTCCTTTTCAAGCCGGGT+GGG + chr4.3:67676877-67676896 None:intergenic 50.0%
!! ATAAACTCTAGAGCGGGCCT+TGG + chr4.3:67677064-67677083 None:intergenic 50.0%
!! GAGCCTTGGTTGGTTTCTGA+GGG + chr4.3:67676084-67676103 None:intergenic 50.0%
!! GTTGGCTTGATAGGTTGAGG+TGG + chr4.3:67676700-67676719 None:intergenic 50.0%
!! TAAACTCTAGAGCGGGCCTT+GGG + chr4.3:67677063-67677082 None:intergenic 50.0%
!! TACTTCCTTTTCAAGCCGGG+TGG + chr4.3:67676878-67676897 None:intergenic 50.0%
ACCGAGAAGGAAGCAGAGAC+AGG - chr4.3:67675699-67675718 MS.gene48652:CDS 55.0%
ACCGCCATCATCGATCTGAC+CGG - chr4.3:67675663-67675682 MS.gene48652:CDS 55.0%
ACCGTAACCATCACCGGAAC+CGG - chr4.3:67675624-67675643 MS.gene48652:CDS 55.0%
AGCGTTGTCGTGGTTGAAGG+TGG - chr4.3:67677138-67677157 MS.gene48652:CDS 55.0%
CCCTGTCTCTGCTTCCTTCT+CGG + chr4.3:67675703-67675722 None:intergenic 55.0%
CCGAGAAGGAAGCAGAGACA+GGG - chr4.3:67675700-67675719 MS.gene48652:CDS 55.0%
CGAAGAACAGGAGCCTTGGT+TGG + chr4.3:67676094-67676113 None:intergenic 55.0%
GGTGGTCATCAGAATCGTGC+CGG + chr4.3:67675646-67675665 None:intergenic 55.0%
GTTACGGTCGCGGTCATGTT+CGG + chr4.3:67675612-67675631 None:intergenic 55.0%
GTTCTTCGTCTTGACGCCCA+GGG - chr4.3:67676106-67676125 MS.gene48652:CDS 55.0%
TGCTGAGCTGCGTGAGAAGA+AGG - chr4.3:67676963-67676982 MS.gene48652:CDS 55.0%
TGGGCGTCAAGACGAAGAAC+AGG + chr4.3:67676106-67676125 None:intergenic 55.0%
TGTTCTTCGTCTTGACGCCC+AGG - chr4.3:67676105-67676124 MS.gene48652:CDS 55.0%
TTCTTCTCACGCAGCTCAGC+AGG + chr4.3:67676964-67676983 None:intergenic 55.0%
! AGATCCCACCCGGCTTGAAA+AGG - chr4.3:67676870-67676889 MS.gene48652:CDS 55.0%
! GGCTTGATAGGTTGAGGTGG+TGG + chr4.3:67676697-67676716 None:intergenic 55.0%
! TCCGGTCAGATCGATGATGG+CGG + chr4.3:67675667-67675686 None:intergenic 55.0%
!! CATCAGAATCGTGCCGGTTC+CGG + chr4.3:67675640-67675659 None:intergenic 55.0%
!! GATAGGTTGAGGTGGTGGAG+AGG + chr4.3:67676692-67676711 None:intergenic 55.0%
!! GGAGCCTTGGTTGGTTTCTG+AGG + chr4.3:67676085-67676104 None:intergenic 55.0%
ACCGCGACCGTAACCATCAC+CGG - chr4.3:67675618-67675637 MS.gene48652:CDS 60.0%
CAAAGCTCCTGCGGCCTAAG+AGG - chr4.3:67676305-67676324 MS.gene48652:CDS 60.0%
GAAGCGCGATGAAGAGAGGG+AGG - chr4.3:67675775-67675794 MS.gene48652:CDS 60.0%
GGCTCAGCAGGCGGTTCAAT+AGG + chr4.3:67676667-67676686 None:intergenic 60.0%
! GCCGGTTCCGGTGATGGTTA+CGG + chr4.3:67675628-67675647 None:intergenic 60.0%
! TCCGGTGATGGTTACGGTCG+CGG + chr4.3:67675622-67675641 None:intergenic 60.0%
!! AATCGTGCCGGTTCCGGTGA+TGG + chr4.3:67675634-67675653 None:intergenic 60.0%
!! AGGTTGAGGTGGTGGAGAGG+CGG + chr4.3:67676689-67676708 None:intergenic 60.0%
!! GGTCAGATCGATGATGGCGG+TGG + chr4.3:67675664-67675683 None:intergenic 60.0%
AGCGGGCCTTGGGATGAGAG+AGG + chr4.3:67677053-67677072 None:intergenic 65.0%
GCAGGCGGTTCAATAGGCCG+AGG + chr4.3:67676661-67676680 None:intergenic 65.0%
TGCAGCTGCTGAGCGTGAGC+AGG - chr4.3:67676903-67676922 MS.gene48652:CDS 65.0%
!! GGTTGAGGTGGTGGAGAGGC+GGG + chr4.3:67676688-67676707 None:intergenic 65.0%
! GGAGAGGCGGGCTCAGCAGG+CGG + chr4.3:67676676-67676695 None:intergenic 75.0%
! GGTGGAGAGGCGGGCTCAGC+AGG + chr4.3:67676679-67676698 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 67675575 67677428 67675575 ID=MS.gene48652
chr4.3 mRNA 67675575 67677428 67675575 ID=MS.gene48652.t1;Parent=MS.gene48652
chr4.3 exon 67675575 67677428 67675575 ID=MS.gene48652.t1.exon1;Parent=MS.gene48652.t1
chr4.3 CDS 67675575 67677428 67675575 ID=cds.MS.gene48652.t1;Parent=MS.gene48652.t1
Gene Sequence

>MS.gene48652

ATGGACGAGAGAGACAAATACGATAGGCGACACTCCGAACATGACCGCGACCGTAACCATCACCGGAACCGGCACGATTCTGATGACCACCGCCATCATCGATCTGACCGGAATCACAGAGAAGACCGAGAAGGAAGCAGAGACAGGGATATGGGATACGATGGAGACGAAAGAGAGGGTAGCAAAGGTAGGTCTAAATCGAAGCGCGATGAAGAGAGGGAGGATTCTCGATACTCCTCGCATAAGAGGAAAGATAGAGAAGAATATAGCGATGATCGGGAATTGGATGATAAGAGAATTAGGGTTAGGGTTTCTGAAGCAAAGAAGGAACGTAGGAGATTTGGTGATAAACTTGGAAGCCTCTCTAGTAGTGATGCCTTAGCAAAGGCTAAGAAGGCTTTACAAATGCAGAAATTGTTGTCAGAGAAGCTGAAGAAAATTCCTCAGTTGAATAACTCAAATTCAGAAGAAAGCACACAGTTGGGTGCTACACCCGACGTTACTGTCCCTCAGAAACCAACCAAGGCTCCTGTTCTTCGTCTTGACGCCCAGGGACGTGAAATAGATGAACATGGAAATGTTGTTAATGTAACTAAGCCAAGCAACCTTAGCACATTAAAGGTCAACATTAATAAACACAAGAGAGATGCATTTGAAATACTAAAACCTGTATTGGATGTCGATCCTGAATCTAATCCTCATTTTGATGAGAGAATGGGTATCGACAAAACAAAGCTCCTGCGGCCTAAGAGGATGAATTTTCTGTTTGTGGAGGAAGGAAAATGGTCAAGAGACGCTGAATCAATAAAATTGAAGAGTAAATTTGGAGAAGCTCAAGCAAAAGAGCAGAAGGCCAAACAAGCACAGCTAGCAAAGGCAAATGCTTCTCCTGATATCAATCCGAACTTAATAGAAATTACAGAGAGAGTTGTAATGAAAGCAAAACTGAAGGACCCGATTCCGGATATTGAGTGGTGGGACATGGCACTTCTGCATTCTGGAAATTATGGTGACATTGCCGCCAACGGTACTATAGATGAAGGCAATATGAAAATGGAAGAATTCAACTTTCATGTGGAACATCCTCGGCCTATTGAACCGCCTGCTGAGCCCGCCTCTCCACCACCTCAACCTATCAAGCCAACTAAACAGGAGCAGAAGAAACTAAAGACCCAAAGGCGTATAGCTAAGGTGAAAAAGCGACAGGAGATGATTAGACATGGTGTCATAGAACCGCCAAAACCAAAGGTCAAGATGAGTAATTTACATAAGGTGCTAGGGACTGAAGCAACTCAAGATCCCACCCGGCTTGAAAAGGAAGTACGTCATGCAGCTGCTGAGCGTGAGCAGGCTCACATAGATAGGAATATTGCACGCAAGCTTACTCCTGCTGAGCTGCGTGAGAAGAAGGAAAGAAAACTGTTTGATGACCCAAATACATTGGACAAACTTGTCTCACTTTACAGGGTAAATGACCTCTCTCATCCCAAGGCCCGCTCTAGAGTTTATGTTAATGCTCAACAAAATCGTTTGACTGGATGTGCGGTGATTTGTGATGGTGTTAGCGTTGTCGTGGTTGAAGGTGGAAGCAAGTCAATTAAGAGGTATGGGAAAGTTATGCTTAGACGTATCAAATGGAGGGATGTTTCAAAAGAGAAAGAAGATAATGAAGATTCAGACGATGCCAATAAATGTGTTCTTGTGTGGCAAGGAAGTGTTGCCAAATCGAGCTTCAATAGGTTCAGTGTTCATGACTGCATTACTGAAGCAGCTGCTCGTAAAGTTTTTGTGGATGCTGGGGTTCCTCATTATTGGGACCAAGCTGTCAACTATACAAATGATGATGCTGTTTGA

Protein sequence

>MS.gene48652.t1

MDERDKYDRRHSEHDRDRNHHRNRHDSDDHRHHRSDRNHREDREGSRDRDMGYDGDEREGSKGRSKSKRDEEREDSRYSSHKRKDREEYSDDRELDDKRIRVRVSEAKKERRRFGDKLGSLSSSDALAKAKKALQMQKLLSEKLKKIPQLNNSNSEESTQLGATPDVTVPQKPTKAPVLRLDAQGREIDEHGNVVNVTKPSNLSTLKVNINKHKRDAFEILKPVLDVDPESNPHFDERMGIDKTKLLRPKRMNFLFVEEGKWSRDAESIKLKSKFGEAQAKEQKAKQAQLAKANASPDINPNLIEITERVVMKAKLKDPIPDIEWWDMALLHSGNYGDIAANGTIDEGNMKMEEFNFHVEHPRPIEPPAEPASPPPQPIKPTKQEQKKLKTQRRIAKVKKRQEMIRHGVIEPPKPKVKMSNLHKVLGTEATQDPTRLEKEVRHAAAEREQAHIDRNIARKLTPAELREKKERKLFDDPNTLDKLVSLYRVNDLSHPKARSRVYVNAQQNRLTGCAVICDGVSVVVVEGGSKSIKRYGKVMLRRIKWRDVSKEKEDNEDSDDANKCVLVWQGSVAKSSFNRFSVHDCITEAAARKVFVDAGVPHYWDQAVNYTNDDAV