Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48652.t1 | AES63022.2 | 77.3 | 595 | 40 | 4 | 117 | 617 | 241 | 834 | 5.40E-226 | 793.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48652.t1 | Q9C7E7 | 68.4 | 456 | 136 | 4 | 163 | 614 | 335 | 786 | 5.9e-157 | 555.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48652.t1 | G7IF06 | 77.3 | 595 | 40 | 4 | 117 | 617 | 241 | 834 | 3.9e-226 | 793.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060774 | MS.gene48652 | 0.859551 | 3.82E-63 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48652.t1 | MTR_1g115920 | 92.576 | 458 | 30 | 2 | 163 | 617 | 378 | 834 | 0.0 | 788 |
MS.gene48652.t1 | MTR_1g115920 | 83.871 | 124 | 11 | 4 | 1 | 118 | 26 | 146 | 6.84e-50 | 186 |
MS.gene48652.t1 | MTR_1g115920 | 78.947 | 57 | 9 | 1 | 117 | 170 | 241 | 297 | 2.72e-11 | 67.0 |
MS.gene48652.t1 | MTR_4g094355 | 83.704 | 270 | 20 | 4 | 75 | 344 | 6 | 251 | 9.80e-139 | 411 |
MS.gene48652.t1 | MTR_4g094355 | 93.194 | 191 | 13 | 0 | 427 | 617 | 250 | 440 | 3.63e-123 | 371 |
MS.gene48652.t1 | MTR_5g039050 | 84.753 | 223 | 25 | 3 | 307 | 529 | 67 | 280 | 1.94e-113 | 346 |
MS.gene48652.t1 | MTR_5g039050 | 82.222 | 45 | 7 | 1 | 169 | 212 | 6 | 50 | 1.52e-14 | 76.6 |
MS.gene48652.t1 | MTR_5g039100 | 70.093 | 107 | 20 | 4 | 15 | 118 | 7 | 104 | 1.38e-30 | 119 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48652.t1 | AT1G28060 | 66.813 | 455 | 145 | 3 | 163 | 614 | 335 | 786 | 0.0 | 602 |
MS.gene48652.t1 | AT1G28060 | 66.813 | 455 | 145 | 3 | 163 | 614 | 335 | 786 | 0.0 | 602 |
MS.gene48652.t1 | AT1G28060 | 66.813 | 455 | 145 | 3 | 163 | 614 | 335 | 786 | 0.0 | 602 |
MS.gene48652.t1 | AT3G55930 | 61.852 | 270 | 99 | 3 | 344 | 611 | 3 | 270 | 8.38e-98 | 300 |
Find 159 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCACACAAGAACACATTTAT+TGG | 0.135860 | 4.3:+67675722 | None:intergenic |
ACAAGTTTGTCCAATGTATT+TGG | 0.138799 | 4.3:+67675975 | None:intergenic |
ATAAAATTGAAGAGTAAATT+TGG | 0.190886 | 4.3:-67676602 | MS.gene48652:CDS |
TGCTGGGGTTCCTCATTATT+GGG | 0.233213 | 4.3:-67675613 | MS.gene48652:CDS |
AATTGGATGATAAGAGAATT+AGG | 0.237950 | 4.3:-67677126 | MS.gene48652:CDS |
ATGCTGGGGTTCCTCATTAT+TGG | 0.242299 | 4.3:-67675614 | MS.gene48652:CDS |
ACAAACTTGTCTCACTTTAC+AGG | 0.244618 | 4.3:-67675962 | MS.gene48652:CDS |
CTTCTGCATTCTGGAAATTA+TGG | 0.253483 | 4.3:-67676419 | MS.gene48652:CDS |
CCCTGTCTCTGCTTCCTTCT+CGG | 0.262332 | 4.3:+67677281 | None:intergenic |
CTCATCTTGACCTTTGGTTT+TGG | 0.279974 | 4.3:+67676170 | None:intergenic |
AGGAAGCAGAGACAGGGATA+TGG | 0.287407 | 4.3:-67677275 | MS.gene48652:CDS |
CTTTGCTAGCTGTGCTTGTT+TGG | 0.291419 | 4.3:+67676553 | None:intergenic |
CTCGGTCTTCTCTGTGATTC+CGG | 0.301582 | 4.3:+67677299 | None:intergenic |
TCCTGTTTAGTTGGCTTGAT+AGG | 0.304342 | 4.3:+67676275 | None:intergenic |
TCACCTTAGCTATACGCCTT+TGG | 0.310566 | 4.3:+67676234 | None:intergenic |
ATTAAGTTCGGATTGATATC+AGG | 0.315138 | 4.3:+67676518 | None:intergenic |
CACCTTAGCTATACGCCTTT+GGG | 0.317473 | 4.3:+67676235 | None:intergenic |
AAGCAACCTTAGCACATTAA+AGG | 0.318390 | 4.3:-67676807 | MS.gene48652:CDS |
TTCTTCTGCTCCTGTTTAGT+TGG | 0.318787 | 4.3:+67676266 | None:intergenic |
GACATGGCACTTCTGCATTC+TGG | 0.331029 | 4.3:-67676428 | MS.gene48652:CDS |
CATCAGAATCGTGCCGGTTC+CGG | 0.331455 | 4.3:+67677344 | None:intergenic |
GTTCATCTATTTCACGTCCC+TGG | 0.343803 | 4.3:+67676858 | None:intergenic |
GGTGGAGAGGCGGGCTCAGC+AGG | 0.346160 | 4.3:+67676305 | None:intergenic |
ATGATAAGAGAATTAGGGTT+AGG | 0.350518 | 4.3:-67677120 | MS.gene48652:CDS |
TGAAATACTAAAACCTGTAT+TGG | 0.355353 | 4.3:-67676753 | MS.gene48652:CDS |
GAACCTATTGAAGCTCGATT+TGG | 0.361063 | 4.3:+67675686 | None:intergenic |
AGATGAAGGCAATATGAAAA+TGG | 0.363556 | 4.3:-67676372 | MS.gene48652:CDS |
TGCAGCTGCTGAGCGTGAGC+AGG | 0.369144 | 4.3:-67676078 | MS.gene48652:CDS |
AAGAAGGAACGTAGGAGATT+TGG | 0.374683 | 4.3:-67677085 | MS.gene48652:CDS |
AAATTACTCATCTTGACCTT+TGG | 0.381357 | 4.3:+67676164 | None:intergenic |
ACCGTAACCATCACCGGAAC+CGG | 0.388029 | 4.3:-67677357 | MS.gene48652:CDS |
ATTGGATGATAAGAGAATTA+GGG | 0.389557 | 4.3:-67677125 | MS.gene48652:CDS |
TGTTTGTGGAGGAAGGAAAA+TGG | 0.392737 | 4.3:-67676643 | MS.gene48652:CDS |
TCTGTAATTTCTATTAAGTT+CGG | 0.393587 | 4.3:+67676506 | None:intergenic |
AGCAAGTCAATTAAGAGGTA+TGG | 0.404160 | 4.3:-67675819 | MS.gene48652:CDS |
CAAGTTTGTCCAATGTATTT+GGG | 0.405319 | 4.3:+67675976 | None:intergenic |
TTCTTCTCACGCAGCTCAGC+AGG | 0.405655 | 4.3:+67676020 | None:intergenic |
TTGCCAAATCGAGCTTCAAT+AGG | 0.406342 | 4.3:-67675689 | MS.gene48652:CDS |
TCAAAATGAGGATTAGATTC+AGG | 0.407433 | 4.3:+67676722 | None:intergenic |
ACCTATCAAGCCAACTAAAC+AGG | 0.413749 | 4.3:-67676276 | MS.gene48652:CDS |
TTCATCTATTTCACGTCCCT+GGG | 0.414957 | 4.3:+67676859 | None:intergenic |
ATAAACTCTAGAGCGGGCCT+TGG | 0.420863 | 4.3:+67675920 | None:intergenic |
CTCGATACTCCTCGCATAAG+AGG | 0.421449 | 4.3:-67677180 | MS.gene48652:CDS |
ATATAGCGATGATCGGGAAT+TGG | 0.423849 | 4.3:-67677143 | MS.gene48652:CDS |
ACCGAGAAGGAAGCAGAGAC+AGG | 0.430015 | 4.3:-67677282 | MS.gene48652:CDS |
TTTAATGTGCTAAGGTTGCT+TGG | 0.430099 | 4.3:+67676809 | None:intergenic |
CACCACTCAATATCCGGAAT+CGG | 0.431295 | 4.3:+67676452 | None:intergenic |
GGAAGCAGAGACAGGGATAT+GGG | 0.431480 | 4.3:-67677274 | MS.gene48652:CDS |
GGCTCAGCAGGCGGTTCAAT+AGG | 0.433119 | 4.3:+67676317 | None:intergenic |
CAAAGCTCCTGCGGCCTAAG+AGG | 0.436122 | 4.3:-67676676 | MS.gene48652:CDS |
TGTTCTTCGTCTTGACGCCC+AGG | 0.441585 | 4.3:-67676876 | MS.gene48652:CDS |
GTTACGGTCGCGGTCATGTT+CGG | 0.446270 | 4.3:+67677372 | None:intergenic |
ATGTCCCACCACTCAATATC+CGG | 0.449028 | 4.3:+67676446 | None:intergenic |
AACAGAAAATTCATCCTCTT+AGG | 0.449563 | 4.3:+67676662 | None:intergenic |
AAAACTGAAGGACCCGATTC+CGG | 0.455391 | 4.3:-67676465 | MS.gene48652:CDS |
TGATAAGAGAATTAGGGTTA+GGG | 0.455771 | 4.3:-67677119 | MS.gene48652:CDS |
GCCGGTTCCGGTGATGGTTA+CGG | 0.466812 | 4.3:+67677356 | None:intergenic |
TCCGGTGATGGTTACGGTCG+CGG | 0.470181 | 4.3:+67677362 | None:intergenic |
TGCTGAGCTGCGTGAGAAGA+AGG | 0.474449 | 4.3:-67676018 | MS.gene48652:CDS |
AGATCCCACCCGGCTTGAAA+AGG | 0.474598 | 4.3:-67676111 | MS.gene48652:CDS |
CATTTGTATAGTTGACAGCT+TGG | 0.476752 | 4.3:+67675589 | None:intergenic |
GGTTGAGGTGGTGGAGAGGC+GGG | 0.476862 | 4.3:+67676296 | None:intergenic |
GTTAGCGTTGTCGTGGTTGA+AGG | 0.477825 | 4.3:-67675846 | MS.gene48652:CDS |
AATCGTGCCGGTTCCGGTGA+TGG | 0.479993 | 4.3:+67677350 | None:intergenic |
AGGAGATTTGGTGATAAACT+TGG | 0.481118 | 4.3:-67677073 | MS.gene48652:CDS |
GTGAGCAGGCTCACATAGAT+AGG | 0.485650 | 4.3:-67676064 | MS.gene48652:CDS |
GCTCAACAAAATCGTTTGAC+TGG | 0.491510 | 4.3:-67675891 | MS.gene48652:CDS |
TAGGGTTTCTGAAGCAAAGA+AGG | 0.491982 | 4.3:-67677101 | MS.gene48652:CDS |
TTCAGAAGAAAGCACACAGT+TGG | 0.492012 | 4.3:-67676945 | MS.gene48652:CDS |
AGAAGAATATAGCGATGATC+GGG | 0.497936 | 4.3:-67677149 | MS.gene48652:CDS |
AGTAATTTACATAAGGTGCT+AGG | 0.498879 | 4.3:-67676149 | MS.gene48652:CDS |
TGGGCGTCAAGACGAAGAAC+AGG | 0.500740 | 4.3:+67676878 | None:intergenic |
TCAGGATCGACATCCAATAC+AGG | 0.501479 | 4.3:+67676740 | None:intergenic |
CAAACTTGTCTCACTTTACA+GGG | 0.502069 | 4.3:-67675961 | MS.gene48652:CDS |
CAAGATGAGTAATTTACATA+AGG | 0.502552 | 4.3:-67676156 | MS.gene48652:CDS |
AGGTTGAGGTGGTGGAGAGG+CGG | 0.504638 | 4.3:+67676295 | None:intergenic |
GCCTTCATCTATAGTACCGT+TGG | 0.504964 | 4.3:+67676385 | None:intergenic |
GGAGCCTTGGTTGGTTTCTG+AGG | 0.506975 | 4.3:+67676899 | None:intergenic |
TGCCTTAGCAAAGGCTAAGA+AGG | 0.507867 | 4.3:-67677032 | MS.gene48652:CDS |
ACCACTCAATATCCGGAATC+GGG | 0.511345 | 4.3:+67676453 | None:intergenic |
GCAAGTCAATTAAGAGGTAT+GGG | 0.512247 | 4.3:-67675818 | MS.gene48652:CDS |
TCAGAAGAAAGCACACAGTT+GGG | 0.515196 | 4.3:-67676944 | MS.gene48652:CDS |
TAAACTCTAGAGCGGGCCTT+GGG | 0.515382 | 4.3:+67675921 | None:intergenic |
CGAAGAACAGGAGCCTTGGT+TGG | 0.517067 | 4.3:+67676890 | None:intergenic |
TTATGCTTAGACGTATCAAA+TGG | 0.519358 | 4.3:-67675791 | MS.gene48652:CDS |
GTGGAAGCAAGTCAATTAAG+AGG | 0.522404 | 4.3:-67675824 | MS.gene48652:CDS |
GGCTTGATAGGTTGAGGTGG+TGG | 0.526396 | 4.3:+67676287 | None:intergenic |
ATCGAAGCGCGATGAAGAGA+GGG | 0.529353 | 4.3:-67677209 | MS.gene48652:CDS |
GTTTGATGACCCAAATACAT+TGG | 0.529532 | 4.3:-67675985 | MS.gene48652:CDS |
ACTTTCATGTGGAACATCCT+CGG | 0.530971 | 4.3:-67676340 | MS.gene48652:CDS |
GAGCCTTGGTTGGTTTCTGA+GGG | 0.533893 | 4.3:+67676900 | None:intergenic |
GACCCAAAGGCGTATAGCTA+AGG | 0.534462 | 4.3:-67676237 | MS.gene48652:CDS |
AGCTCAAGCAAAAGAGCAGA+AGG | 0.535132 | 4.3:-67676576 | MS.gene48652:CDS |
GAGAAGAATATAGCGATGAT+CGG | 0.536885 | 4.3:-67677150 | MS.gene48652:CDS |
ACCGCGACCGTAACCATCAC+CGG | 0.538461 | 4.3:-67677363 | MS.gene48652:CDS |
CCCATTCTCTCATCAAAATG+AGG | 0.549338 | 4.3:+67676710 | None:intergenic |
CAAACAAGCACAGCTAGCAA+AGG | 0.555686 | 4.3:-67676552 | MS.gene48652:CDS |
TTCTGAGGGACAGTAACGTC+GGG | 0.556866 | 4.3:+67676914 | None:intergenic |
AAGACGAAGAACAGGAGCCT+TGG | 0.557281 | 4.3:+67676886 | None:intergenic |
TTCATCTATAGTACCGTTGG+CGG | 0.558630 | 4.3:+67676388 | None:intergenic |
AATCGAAGCGCGATGAAGAG+AGG | 0.561052 | 4.3:-67677210 | MS.gene48652:CDS |
GACGAAAGAGAGGGTAGCAA+AGG | 0.561832 | 4.3:-67677241 | MS.gene48652:CDS |
GGAGAGGCGGGCTCAGCAGG+CGG | 0.561936 | 4.3:+67676308 | None:intergenic |
TGTTGACCTTTAATGTGCTA+AGG | 0.561959 | 4.3:+67676801 | None:intergenic |
GTTCTTCGTCTTGACGCCCA+GGG | 0.562372 | 4.3:-67676875 | MS.gene48652:CDS |
AATTCATCCTCTTAGGCCGC+AGG | 0.563858 | 4.3:+67676669 | None:intergenic |
GTAATTTACATAAGGTGCTA+GGG | 0.564338 | 4.3:-67676148 | MS.gene48652:CDS |
GGATATTGAGTGGTGGGACA+TGG | 0.570746 | 4.3:-67676444 | MS.gene48652:CDS |
TTAGTTGGCTTGATAGGTTG+AGG | 0.576255 | 4.3:+67676281 | None:intergenic |
GGAAGAATTCAACTTTCATG+TGG | 0.576369 | 4.3:-67676351 | MS.gene48652:CDS |
AGCCTTCTTAGCCTTTGCTA+AGG | 0.581971 | 4.3:+67677030 | None:intergenic |
GGTCAGATCGATGATGGCGG+TGG | 0.582301 | 4.3:+67677320 | None:intergenic |
CCGAGAAGGAAGCAGAGACA+GGG | 0.584656 | 4.3:-67677281 | MS.gene48652:CDS |
GTTGGCTTGATAGGTTGAGG+TGG | 0.586185 | 4.3:+67676284 | None:intergenic |
GCCAACGGTACTATAGATGA+AGG | 0.586217 | 4.3:-67676386 | MS.gene48652:CDS |
CTAAGGCATCACTACTAGAG+AGG | 0.588190 | 4.3:+67677047 | None:intergenic |
GATTCCGGTCAGATCGATGA+TGG | 0.589596 | 4.3:+67677314 | None:intergenic |
ATTAACATAAACTCTAGAGC+GGG | 0.591581 | 4.3:+67675914 | None:intergenic |
TGCTTAGACGTATCAAATGG+AGG | 0.592616 | 4.3:-67675788 | MS.gene48652:CDS |
AAAGAGAGGGTAGCAAAGGT+AGG | 0.594676 | 4.3:-67677237 | MS.gene48652:CDS |
TATGGTGACATTGCCGCCAA+CGG | 0.595136 | 4.3:-67676401 | MS.gene48652:CDS |
GGATGTGCGGTGATTTGTGA+TGG | 0.599326 | 4.3:-67675870 | MS.gene48652:CDS |
TCTATCTTTCCTCTTATGCG+AGG | 0.606208 | 4.3:+67677171 | None:intergenic |
GACAGGGATATGGGATACGA+TGG | 0.607091 | 4.3:-67677265 | MS.gene48652:CDS |
GGTGGTCATCAGAATCGTGC+CGG | 0.608684 | 4.3:+67677338 | None:intergenic |
ACCGCCATCATCGATCTGAC+CGG | 0.610844 | 4.3:-67677318 | MS.gene48652:CDS |
GCTTAGACGTATCAAATGGA+GGG | 0.611542 | 4.3:-67675787 | MS.gene48652:CDS |
CGATTCCGGATATTGAGTGG+TGG | 0.614030 | 4.3:-67676451 | MS.gene48652:CDS |
TGATGGTGTTAGCGTTGTCG+TGG | 0.615588 | 4.3:-67675853 | MS.gene48652:CDS |
AAATGACCTCTCTCATCCCA+AGG | 0.616566 | 4.3:-67675937 | MS.gene48652:CDS |
TGTAATGAAAGCAAAACTGA+AGG | 0.617069 | 4.3:-67676477 | MS.gene48652:CDS |
ACAGCTTGGTCCCAATAATG+AGG | 0.617442 | 4.3:+67675603 | None:intergenic |
GAATTTGAGTTATTCAACTG+AGG | 0.620565 | 4.3:+67676965 | None:intergenic |
TAGTAGTGATGCCTTAGCAA+AGG | 0.620911 | 4.3:-67677041 | MS.gene48652:CDS |
AGCGTTGTCGTGGTTGAAGG+TGG | 0.623840 | 4.3:-67675843 | MS.gene48652:CDS |
ATACGATGGAGACGAAAGAG+AGG | 0.628066 | 4.3:-67677251 | MS.gene48652:CDS |
GCAGGCGGTTCAATAGGCCG+AGG | 0.628346 | 4.3:+67676323 | None:intergenic |
CATAGAACCGCCAAAACCAA+AGG | 0.629032 | 4.3:-67676180 | MS.gene48652:CDS |
GATTCCGGATATTGAGTGGT+GGG | 0.629362 | 4.3:-67676450 | MS.gene48652:CDS |
CGACAGGAGATGATTAGACA+TGG | 0.631416 | 4.3:-67676206 | MS.gene48652:CDS |
CCAATAAATGTGTTCTTGTG+TGG | 0.635554 | 4.3:-67675722 | MS.gene48652:CDS |
AAATGTGTTCTTGTGTGGCA+AGG | 0.639668 | 4.3:-67675717 | MS.gene48652:CDS |
GATAGGTTGAGGTGGTGGAG+AGG | 0.641107 | 4.3:+67676292 | None:intergenic |
TTTCTGAGGGACAGTAACGT+CGG | 0.642738 | 4.3:+67676913 | None:intergenic |
ACCCGATTCCGGATATTGAG+TGG | 0.647460 | 4.3:-67676454 | MS.gene48652:CDS |
AGCGGGCCTTGGGATGAGAG+AGG | 0.647591 | 4.3:+67675931 | None:intergenic |
AGAAGAAACTAAAGACCCAA+AGG | 0.655642 | 4.3:-67676250 | MS.gene48652:CDS |
GGACGTGAAATAGATGAACA+TGG | 0.655823 | 4.3:-67676854 | MS.gene48652:CDS |
ACGAGAGAGACAAATACGAT+AGG | 0.661747 | 4.3:-67677402 | MS.gene48652:CDS |
GAAGCGCGATGAAGAGAGGG+AGG | 0.664190 | 4.3:-67677206 | MS.gene48652:CDS |
AATCACAGAGAAGACCGAGA+AGG | 0.670001 | 4.3:-67677295 | MS.gene48652:CDS |
TACGATGGAGACGAAAGAGA+GGG | 0.671943 | 4.3:-67677250 | MS.gene48652:CDS |
CTGAAGCAAAGAAGGAACGT+AGG | 0.673233 | 4.3:-67677093 | MS.gene48652:CDS |
CATTAACATAAACTCTAGAG+CGG | 0.690364 | 4.3:+67675913 | None:intergenic |
AAATCGTTTGACTGGATGTG+CGG | 0.693768 | 4.3:-67675883 | MS.gene48652:CDS |
TCGACAAAACAAAGCTCCTG+CGG | 0.696622 | 4.3:-67676685 | MS.gene48652:CDS |
TCCGGTCAGATCGATGATGG+CGG | 0.696675 | 4.3:+67677317 | None:intergenic |
AAGCAACTCAAGATCCCACC+CGG | 0.703568 | 4.3:-67676121 | MS.gene48652:CDS |
TGTCCCTCAGAAACCAACCA+AGG | 0.741969 | 4.3:-67676903 | MS.gene48652:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAATTGAAGAGTAAATT+TGG | - | chr4.3:67676379-67676398 | MS.gene48652:CDS | 15.0% |
!! | TCTGTAATTTCTATTAAGTT+CGG | + | chr4.3:67676478-67676497 | None:intergenic | 20.0% |
! | AATTGGATGATAAGAGAATT+AGG | - | chr4.3:67675855-67675874 | MS.gene48652:CDS | 25.0% |
! | ATTGGATGATAAGAGAATTA+GGG | - | chr4.3:67675856-67675875 | MS.gene48652:CDS | 25.0% |
! | CAAGATGAGTAATTTACATA+AGG | - | chr4.3:67676825-67676844 | MS.gene48652:CDS | 25.0% |
! | TGAAATACTAAAACCTGTAT+TGG | - | chr4.3:67676228-67676247 | MS.gene48652:CDS | 25.0% |
AAATTACTCATCTTGACCTT+TGG | + | chr4.3:67676820-67676839 | None:intergenic | 30.0% | |
AACAGAAAATTCATCCTCTT+AGG | + | chr4.3:67676322-67676341 | None:intergenic | 30.0% | |
ACAAGTTTGTCCAATGTATT+TGG | + | chr4.3:67677009-67677028 | None:intergenic | 30.0% | |
AGATGAAGGCAATATGAAAA+TGG | - | chr4.3:67676609-67676628 | MS.gene48652:CDS | 30.0% | |
ATGATAAGAGAATTAGGGTT+AGG | - | chr4.3:67675861-67675880 | MS.gene48652:CDS | 30.0% | |
ATTAAGTTCGGATTGATATC+AGG | + | chr4.3:67676466-67676485 | None:intergenic | 30.0% | |
CAAGTTTGTCCAATGTATTT+GGG | + | chr4.3:67677008-67677027 | None:intergenic | 30.0% | |
TCAAAATGAGGATTAGATTC+AGG | + | chr4.3:67676262-67676281 | None:intergenic | 30.0% | |
TGATAAGAGAATTAGGGTTA+GGG | - | chr4.3:67675862-67675881 | MS.gene48652:CDS | 30.0% | |
TGTAATGAAAGCAAAACTGA+AGG | - | chr4.3:67676504-67676523 | MS.gene48652:CDS | 30.0% | |
TTATGCTTAGACGTATCAAA+TGG | - | chr4.3:67677190-67677209 | MS.gene48652:CDS | 30.0% | |
! | AGTAATTTACATAAGGTGCT+AGG | - | chr4.3:67676832-67676851 | MS.gene48652:CDS | 30.0% |
! | CATTAACATAAACTCTAGAG+CGG | + | chr4.3:67677071-67677090 | None:intergenic | 30.0% |
! | GAATTTGAGTTATTCAACTG+AGG | + | chr4.3:67676019-67676038 | None:intergenic | 30.0% |
! | GTAATTTACATAAGGTGCTA+GGG | - | chr4.3:67676833-67676852 | MS.gene48652:CDS | 30.0% |
!! | ATTAACATAAACTCTAGAGC+GGG | + | chr4.3:67677070-67677089 | None:intergenic | 30.0% |
AAGCAACCTTAGCACATTAA+AGG | - | chr4.3:67676174-67676193 | MS.gene48652:CDS | 35.0% | |
ACAAACTTGTCTCACTTTAC+AGG | - | chr4.3:67677019-67677038 | MS.gene48652:CDS | 35.0% | |
AGAAGAAACTAAAGACCCAA+AGG | - | chr4.3:67676731-67676750 | MS.gene48652:CDS | 35.0% | |
AGAAGAATATAGCGATGATC+GGG | - | chr4.3:67675832-67675851 | MS.gene48652:CDS | 35.0% | |
AGCAAGTCAATTAAGAGGTA+TGG | - | chr4.3:67677162-67677181 | MS.gene48652:CDS | 35.0% | |
CAAACTTGTCTCACTTTACA+GGG | - | chr4.3:67677020-67677039 | MS.gene48652:CDS | 35.0% | |
CATTTGTATAGTTGACAGCT+TGG | + | chr4.3:67677395-67677414 | None:intergenic | 35.0% | |
CCAATAAATGTGTTCTTGTG+TGG | - | chr4.3:67677259-67677278 | MS.gene48652:CDS | 35.0% | |
CCACACAAGAACACATTTAT+TGG | + | chr4.3:67677262-67677281 | None:intergenic | 35.0% | |
GAGAAGAATATAGCGATGAT+CGG | - | chr4.3:67675831-67675850 | MS.gene48652:CDS | 35.0% | |
GGAAGAATTCAACTTTCATG+TGG | - | chr4.3:67676630-67676649 | MS.gene48652:CDS | 35.0% | |
TGTTGACCTTTAATGTGCTA+AGG | + | chr4.3:67676183-67676202 | None:intergenic | 35.0% | |
TTTAATGTGCTAAGGTTGCT+TGG | + | chr4.3:67676175-67676194 | None:intergenic | 35.0% | |
! | AATTTTCTGTTTGTGGAGGA+AGG | - | chr4.3:67676331-67676350 | MS.gene48652:CDS | 35.0% |
! | CTTCTGCATTCTGGAAATTA+TGG | - | chr4.3:67676562-67676581 | MS.gene48652:CDS | 35.0% |
! | GAGGATGAATTTTCTGTTTG+TGG | - | chr4.3:67676324-67676343 | MS.gene48652:CDS | 35.0% |
! | GATGAATTTTCTGTTTGTGG+AGG | - | chr4.3:67676327-67676346 | MS.gene48652:CDS | 35.0% |
! | GCAAGTCAATTAAGAGGTAT+GGG | - | chr4.3:67677163-67677182 | MS.gene48652:CDS | 35.0% |
! | GTAAAGTTTTTGTGGATGCT+GGG | - | chr4.3:67677352-67677371 | MS.gene48652:CDS | 35.0% |
! | GTTTGATGACCCAAATACAT+TGG | - | chr4.3:67676996-67677015 | MS.gene48652:CDS | 35.0% |
! | TAAAGTTTTTGTGGATGCTG+GGG | - | chr4.3:67677353-67677372 | MS.gene48652:CDS | 35.0% |
!! | AGGAGATTTGGTGATAAACT+TGG | - | chr4.3:67675908-67675927 | MS.gene48652:CDS | 35.0% |
!! | CCTCATTTTGATGAGAGAAT+GGG | - | chr4.3:67676271-67676290 | MS.gene48652:CDS | 35.0% |
!! | TCCTCATTTTGATGAGAGAA+TGG | - | chr4.3:67676270-67676289 | MS.gene48652:CDS | 35.0% |
AAATCGTTTGACTGGATGTG+CGG | - | chr4.3:67677098-67677117 | MS.gene48652:CDS | 40.0% | |
AAATGTGTTCTTGTGTGGCA+AGG | - | chr4.3:67677264-67677283 | MS.gene48652:CDS | 40.0% | |
AAGAAGGAACGTAGGAGATT+TGG | - | chr4.3:67675896-67675915 | MS.gene48652:CDS | 40.0% | |
ACCTATCAAGCCAACTAAAC+AGG | - | chr4.3:67676705-67676724 | MS.gene48652:CDS | 40.0% | |
ACGAGAGAGACAAATACGAT+AGG | - | chr4.3:67675579-67675598 | MS.gene48652:CDS | 40.0% | |
ACTTTCATGTGGAACATCCT+CGG | - | chr4.3:67676641-67676660 | MS.gene48652:CDS | 40.0% | |
ATATAGCGATGATCGGGAAT+TGG | - | chr4.3:67675838-67675857 | MS.gene48652:CDS | 40.0% | |
CCCATTCTCTCATCAAAATG+AGG | + | chr4.3:67676274-67676293 | None:intergenic | 40.0% | |
GAACCTATTGAAGCTCGATT+TGG | + | chr4.3:67677298-67677317 | None:intergenic | 40.0% | |
GCTCAACAAAATCGTTTGAC+TGG | - | chr4.3:67677090-67677109 | MS.gene48652:CDS | 40.0% | |
GCTTAGACGTATCAAATGGA+GGG | - | chr4.3:67677194-67677213 | MS.gene48652:CDS | 40.0% | |
GGACGTGAAATAGATGAACA+TGG | - | chr4.3:67676127-67676146 | MS.gene48652:CDS | 40.0% | |
GTGGAAGCAAGTCAATTAAG+AGG | - | chr4.3:67677157-67677176 | MS.gene48652:CDS | 40.0% | |
TAGTAGTGATGCCTTAGCAA+AGG | - | chr4.3:67675940-67675959 | MS.gene48652:CDS | 40.0% | |
TCTATCTTTCCTCTTATGCG+AGG | + | chr4.3:67675813-67675832 | None:intergenic | 40.0% | |
TGCTTAGACGTATCAAATGG+AGG | - | chr4.3:67677193-67677212 | MS.gene48652:CDS | 40.0% | |
TGTTTGTGGAGGAAGGAAAA+TGG | - | chr4.3:67676338-67676357 | MS.gene48652:CDS | 40.0% | |
TTCATCTATAGTACCGTTGG+CGG | + | chr4.3:67676596-67676615 | None:intergenic | 40.0% | |
TTCATCTATTTCACGTCCCT+GGG | + | chr4.3:67676125-67676144 | None:intergenic | 40.0% | |
TTCTTCTGCTCCTGTTTAGT+TGG | + | chr4.3:67676718-67676737 | None:intergenic | 40.0% | |
TTGCCAAATCGAGCTTCAAT+AGG | - | chr4.3:67677292-67677311 | MS.gene48652:CDS | 40.0% | |
! | AGCTGCTCGTAAAGTTTTTG+TGG | - | chr4.3:67677344-67677363 | MS.gene48652:CDS | 40.0% |
! | CGTAAAGTTTTTGTGGATGC+TGG | - | chr4.3:67677351-67677370 | MS.gene48652:CDS | 40.0% |
! | TCAGAAGAAAGCACACAGTT+GGG | - | chr4.3:67676037-67676056 | MS.gene48652:CDS | 40.0% |
! | TTCAGAAGAAAGCACACAGT+TGG | - | chr4.3:67676036-67676055 | MS.gene48652:CDS | 40.0% |
!! | CTCATCTTGACCTTTGGTTT+TGG | + | chr4.3:67676814-67676833 | None:intergenic | 40.0% |
!! | TAGGGTTTCTGAAGCAAAGA+AGG | - | chr4.3:67675880-67675899 | MS.gene48652:CDS | 40.0% |
!! | TCCTGTTTAGTTGGCTTGAT+AGG | + | chr4.3:67676709-67676728 | None:intergenic | 40.0% |
!! | TTAGTTGGCTTGATAGGTTG+AGG | + | chr4.3:67676703-67676722 | None:intergenic | 40.0% |
!!! | ATCTTGACCTTTGGTTTTGG+CGG | + | chr4.3:67676811-67676830 | None:intergenic | 40.0% |
AAAACTGAAGGACCCGATTC+CGG | - | chr4.3:67676516-67676535 | MS.gene48652:CDS | 45.0% | |
AAAGAGAGGGTAGCAAAGGT+AGG | - | chr4.3:67675744-67675763 | MS.gene48652:CDS | 45.0% | |
AAATGACCTCTCTCATCCCA+AGG | - | chr4.3:67677044-67677063 | MS.gene48652:CDS | 45.0% | |
AATCACAGAGAAGACCGAGA+AGG | - | chr4.3:67675686-67675705 | MS.gene48652:CDS | 45.0% | |
ACAGCTTGGTCCCAATAATG+AGG | + | chr4.3:67677381-67677400 | None:intergenic | 45.0% | |
ACCACTCAATATCCGGAATC+GGG | + | chr4.3:67676531-67676550 | None:intergenic | 45.0% | |
AGCTAAGGTGAAAAAGCGAC+AGG | - | chr4.3:67676759-67676778 | MS.gene48652:CDS | 45.0% | |
AGCTCAAGCAAAAGAGCAGA+AGG | - | chr4.3:67676405-67676424 | MS.gene48652:CDS | 45.0% | |
ATACGATGGAGACGAAAGAG+AGG | - | chr4.3:67675730-67675749 | MS.gene48652:CDS | 45.0% | |
ATGCTGGGGTTCCTCATTAT+TGG | - | chr4.3:67677367-67677386 | MS.gene48652:CDS | 45.0% | |
ATGTCCCACCACTCAATATC+CGG | + | chr4.3:67676538-67676557 | None:intergenic | 45.0% | |
CAAACAAGCACAGCTAGCAA+AGG | - | chr4.3:67676429-67676448 | MS.gene48652:CDS | 45.0% | |
CACCACTCAATATCCGGAAT+CGG | + | chr4.3:67676532-67676551 | None:intergenic | 45.0% | |
CACCTTAGCTATACGCCTTT+GGG | + | chr4.3:67676749-67676768 | None:intergenic | 45.0% | |
CATAGAACCGCCAAAACCAA+AGG | - | chr4.3:67676801-67676820 | MS.gene48652:CDS | 45.0% | |
CGACAGGAGATGATTAGACA+TGG | - | chr4.3:67676775-67676794 | MS.gene48652:CDS | 45.0% | |
CTGAAGCAAAGAAGGAACGT+AGG | - | chr4.3:67675888-67675907 | MS.gene48652:CDS | 45.0% | |
CTTTGCTAGCTGTGCTTGTT+TGG | + | chr4.3:67676431-67676450 | None:intergenic | 45.0% | |
GATTCCGGATATTGAGTGGT+GGG | - | chr4.3:67676531-67676550 | MS.gene48652:CDS | 45.0% | |
GCCAACGGTACTATAGATGA+AGG | - | chr4.3:67676595-67676614 | MS.gene48652:CDS | 45.0% | |
GCCTTCATCTATAGTACCGT+TGG | + | chr4.3:67676599-67676618 | None:intergenic | 45.0% | |
GTTCATCTATTTCACGTCCC+TGG | + | chr4.3:67676126-67676145 | None:intergenic | 45.0% | |
TACGATGGAGACGAAAGAGA+GGG | - | chr4.3:67675731-67675750 | MS.gene48652:CDS | 45.0% | |
TCACCTTAGCTATACGCCTT+TGG | + | chr4.3:67676750-67676769 | None:intergenic | 45.0% | |
TCAGGATCGACATCCAATAC+AGG | + | chr4.3:67676244-67676263 | None:intergenic | 45.0% | |
TCGACAAAACAAAGCTCCTG+CGG | - | chr4.3:67676296-67676315 | MS.gene48652:CDS | 45.0% | |
TGCCTTAGCAAAGGCTAAGA+AGG | - | chr4.3:67675949-67675968 | MS.gene48652:CDS | 45.0% | |
TGCTGGGGTTCCTCATTATT+GGG | - | chr4.3:67677368-67677387 | MS.gene48652:CDS | 45.0% | |
! | AGCCTTCTTAGCCTTTGCTA+AGG | + | chr4.3:67675954-67675973 | None:intergenic | 45.0% |
! | CTAAGGCATCACTACTAGAG+AGG | + | chr4.3:67675937-67675956 | None:intergenic | 45.0% |
! | TTTCTGAGGGACAGTAACGT+CGG | + | chr4.3:67676071-67676090 | None:intergenic | 45.0% |
!! | ACGTACTTCCTTTTCAAGCC+GGG | + | chr4.3:67676881-67676900 | None:intergenic | 45.0% |
!! | GACGTACTTCCTTTTCAAGC+CGG | + | chr4.3:67676882-67676901 | None:intergenic | 45.0% |
AAGACGAAGAACAGGAGCCT+TGG | + | chr4.3:67676098-67676117 | None:intergenic | 50.0% | |
AAGCAACTCAAGATCCCACC+CGG | - | chr4.3:67676860-67676879 | MS.gene48652:CDS | 50.0% | |
AATCGAAGCGCGATGAAGAG+AGG | - | chr4.3:67675771-67675790 | MS.gene48652:CDS | 50.0% | |
AATTCATCCTCTTAGGCCGC+AGG | + | chr4.3:67676315-67676334 | None:intergenic | 50.0% | |
ACCCGATTCCGGATATTGAG+TGG | - | chr4.3:67676527-67676546 | MS.gene48652:CDS | 50.0% | |
AGGAAGCAGAGACAGGGATA+TGG | - | chr4.3:67675706-67675725 | MS.gene48652:CDS | 50.0% | |
ATCGAAGCGCGATGAAGAGA+GGG | - | chr4.3:67675772-67675791 | MS.gene48652:CDS | 50.0% | |
CGATTCCGGATATTGAGTGG+TGG | - | chr4.3:67676530-67676549 | MS.gene48652:CDS | 50.0% | |
CTCGATACTCCTCGCATAAG+AGG | - | chr4.3:67675801-67675820 | MS.gene48652:CDS | 50.0% | |
CTCGGTCTTCTCTGTGATTC+CGG | + | chr4.3:67675685-67675704 | None:intergenic | 50.0% | |
GACAGGGATATGGGATACGA+TGG | - | chr4.3:67675716-67675735 | MS.gene48652:CDS | 50.0% | |
GACATGGCACTTCTGCATTC+TGG | - | chr4.3:67676553-67676572 | MS.gene48652:CDS | 50.0% | |
GACGAAAGAGAGGGTAGCAA+AGG | - | chr4.3:67675740-67675759 | MS.gene48652:CDS | 50.0% | |
GATTCCGGTCAGATCGATGA+TGG | + | chr4.3:67675670-67675689 | None:intergenic | 50.0% | |
GGAAGCAGAGACAGGGATAT+GGG | - | chr4.3:67675707-67675726 | MS.gene48652:CDS | 50.0% | |
GTGAGCAGGCTCACATAGAT+AGG | - | chr4.3:67676917-67676936 | MS.gene48652:CDS | 50.0% | |
GTTAGCGTTGTCGTGGTTGA+AGG | - | chr4.3:67677135-67677154 | MS.gene48652:CDS | 50.0% | |
TATGGTGACATTGCCGCCAA+CGG | - | chr4.3:67676580-67676599 | MS.gene48652:CDS | 50.0% | |
TGTCCCTCAGAAACCAACCA+AGG | - | chr4.3:67676078-67676097 | MS.gene48652:CDS | 50.0% | |
! | GACCCAAAGGCGTATAGCTA+AGG | - | chr4.3:67676744-67676763 | MS.gene48652:CDS | 50.0% |
! | GGATATTGAGTGGTGGGACA+TGG | - | chr4.3:67676537-67676556 | MS.gene48652:CDS | 50.0% |
! | GGATGTGCGGTGATTTGTGA+TGG | - | chr4.3:67677111-67677130 | MS.gene48652:CDS | 50.0% |
! | TGATGGTGTTAGCGTTGTCG+TGG | - | chr4.3:67677128-67677147 | MS.gene48652:CDS | 50.0% |
! | TTCTGAGGGACAGTAACGTC+GGG | + | chr4.3:67676070-67676089 | None:intergenic | 50.0% |
!! | ACTTCCTTTTCAAGCCGGGT+GGG | + | chr4.3:67676877-67676896 | None:intergenic | 50.0% |
!! | ATAAACTCTAGAGCGGGCCT+TGG | + | chr4.3:67677064-67677083 | None:intergenic | 50.0% |
!! | GAGCCTTGGTTGGTTTCTGA+GGG | + | chr4.3:67676084-67676103 | None:intergenic | 50.0% |
!! | GTTGGCTTGATAGGTTGAGG+TGG | + | chr4.3:67676700-67676719 | None:intergenic | 50.0% |
!! | TAAACTCTAGAGCGGGCCTT+GGG | + | chr4.3:67677063-67677082 | None:intergenic | 50.0% |
!! | TACTTCCTTTTCAAGCCGGG+TGG | + | chr4.3:67676878-67676897 | None:intergenic | 50.0% |
ACCGAGAAGGAAGCAGAGAC+AGG | - | chr4.3:67675699-67675718 | MS.gene48652:CDS | 55.0% | |
ACCGCCATCATCGATCTGAC+CGG | - | chr4.3:67675663-67675682 | MS.gene48652:CDS | 55.0% | |
ACCGTAACCATCACCGGAAC+CGG | - | chr4.3:67675624-67675643 | MS.gene48652:CDS | 55.0% | |
AGCGTTGTCGTGGTTGAAGG+TGG | - | chr4.3:67677138-67677157 | MS.gene48652:CDS | 55.0% | |
CCCTGTCTCTGCTTCCTTCT+CGG | + | chr4.3:67675703-67675722 | None:intergenic | 55.0% | |
CCGAGAAGGAAGCAGAGACA+GGG | - | chr4.3:67675700-67675719 | MS.gene48652:CDS | 55.0% | |
CGAAGAACAGGAGCCTTGGT+TGG | + | chr4.3:67676094-67676113 | None:intergenic | 55.0% | |
GGTGGTCATCAGAATCGTGC+CGG | + | chr4.3:67675646-67675665 | None:intergenic | 55.0% | |
GTTACGGTCGCGGTCATGTT+CGG | + | chr4.3:67675612-67675631 | None:intergenic | 55.0% | |
GTTCTTCGTCTTGACGCCCA+GGG | - | chr4.3:67676106-67676125 | MS.gene48652:CDS | 55.0% | |
TGCTGAGCTGCGTGAGAAGA+AGG | - | chr4.3:67676963-67676982 | MS.gene48652:CDS | 55.0% | |
TGGGCGTCAAGACGAAGAAC+AGG | + | chr4.3:67676106-67676125 | None:intergenic | 55.0% | |
TGTTCTTCGTCTTGACGCCC+AGG | - | chr4.3:67676105-67676124 | MS.gene48652:CDS | 55.0% | |
TTCTTCTCACGCAGCTCAGC+AGG | + | chr4.3:67676964-67676983 | None:intergenic | 55.0% | |
! | AGATCCCACCCGGCTTGAAA+AGG | - | chr4.3:67676870-67676889 | MS.gene48652:CDS | 55.0% |
! | GGCTTGATAGGTTGAGGTGG+TGG | + | chr4.3:67676697-67676716 | None:intergenic | 55.0% |
! | TCCGGTCAGATCGATGATGG+CGG | + | chr4.3:67675667-67675686 | None:intergenic | 55.0% |
!! | CATCAGAATCGTGCCGGTTC+CGG | + | chr4.3:67675640-67675659 | None:intergenic | 55.0% |
!! | GATAGGTTGAGGTGGTGGAG+AGG | + | chr4.3:67676692-67676711 | None:intergenic | 55.0% |
!! | GGAGCCTTGGTTGGTTTCTG+AGG | + | chr4.3:67676085-67676104 | None:intergenic | 55.0% |
ACCGCGACCGTAACCATCAC+CGG | - | chr4.3:67675618-67675637 | MS.gene48652:CDS | 60.0% | |
CAAAGCTCCTGCGGCCTAAG+AGG | - | chr4.3:67676305-67676324 | MS.gene48652:CDS | 60.0% | |
GAAGCGCGATGAAGAGAGGG+AGG | - | chr4.3:67675775-67675794 | MS.gene48652:CDS | 60.0% | |
GGCTCAGCAGGCGGTTCAAT+AGG | + | chr4.3:67676667-67676686 | None:intergenic | 60.0% | |
! | GCCGGTTCCGGTGATGGTTA+CGG | + | chr4.3:67675628-67675647 | None:intergenic | 60.0% |
! | TCCGGTGATGGTTACGGTCG+CGG | + | chr4.3:67675622-67675641 | None:intergenic | 60.0% |
!! | AATCGTGCCGGTTCCGGTGA+TGG | + | chr4.3:67675634-67675653 | None:intergenic | 60.0% |
!! | AGGTTGAGGTGGTGGAGAGG+CGG | + | chr4.3:67676689-67676708 | None:intergenic | 60.0% |
!! | GGTCAGATCGATGATGGCGG+TGG | + | chr4.3:67675664-67675683 | None:intergenic | 60.0% |
AGCGGGCCTTGGGATGAGAG+AGG | + | chr4.3:67677053-67677072 | None:intergenic | 65.0% | |
GCAGGCGGTTCAATAGGCCG+AGG | + | chr4.3:67676661-67676680 | None:intergenic | 65.0% | |
TGCAGCTGCTGAGCGTGAGC+AGG | - | chr4.3:67676903-67676922 | MS.gene48652:CDS | 65.0% | |
!! | GGTTGAGGTGGTGGAGAGGC+GGG | + | chr4.3:67676688-67676707 | None:intergenic | 65.0% |
! | GGAGAGGCGGGCTCAGCAGG+CGG | + | chr4.3:67676676-67676695 | None:intergenic | 75.0% |
! | GGTGGAGAGGCGGGCTCAGC+AGG | + | chr4.3:67676679-67676698 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 67675575 | 67677428 | 67675575 | ID=MS.gene48652 |
chr4.3 | mRNA | 67675575 | 67677428 | 67675575 | ID=MS.gene48652.t1;Parent=MS.gene48652 |
chr4.3 | exon | 67675575 | 67677428 | 67675575 | ID=MS.gene48652.t1.exon1;Parent=MS.gene48652.t1 |
chr4.3 | CDS | 67675575 | 67677428 | 67675575 | ID=cds.MS.gene48652.t1;Parent=MS.gene48652.t1 |
Gene Sequence |
Protein sequence |