AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83322


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83322.t1 MTR_1g115920 92.576 458 30 2 163 617 378 834 0.0 788
MS.gene83322.t1 MTR_1g115920 83.871 124 11 4 1 118 26 146 6.84e-50 186
MS.gene83322.t1 MTR_1g115920 78.947 57 9 1 117 170 241 297 2.72e-11 67.0
MS.gene83322.t1 MTR_4g094355 83.704 270 20 4 75 344 6 251 9.80e-139 411
MS.gene83322.t1 MTR_4g094355 93.194 191 13 0 427 617 250 440 3.63e-123 371
MS.gene83322.t1 MTR_5g039050 84.753 223 25 3 307 529 67 280 1.94e-113 346
MS.gene83322.t1 MTR_5g039050 82.222 45 7 1 169 212 6 50 1.52e-14 76.6
MS.gene83322.t1 MTR_5g039100 70.093 107 20 4 15 118 7 104 1.38e-30 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83322.t1 AT1G28060 66.813 455 145 3 163 614 335 786 0.0 602
MS.gene83322.t1 AT1G28060 66.813 455 145 3 163 614 335 786 0.0 602
MS.gene83322.t1 AT1G28060 66.813 455 145 3 163 614 335 786 0.0 602
MS.gene83322.t1 AT3G55930 61.852 270 99 3 344 611 3 270 8.38e-98 300

Find 160 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACACAAGAACACATTTAT+TGG 0.135860 4.1:+68035436 None:intergenic
ACAAGTTTGTCCAATGTATT+TGG 0.138799 4.1:+68035689 None:intergenic
ATAAAATTGAAGAGTAAATT+TGG 0.190886 4.1:-68036316 MS.gene83322:CDS
TGCTGGGGTTCCTCATTATT+GGG 0.233213 4.1:-68035327 MS.gene83322:CDS
AATTGGATGATAAGAGAATT+AGG 0.237950 4.1:-68036840 MS.gene83322:CDS
ATGCTGGGGTTCCTCATTAT+TGG 0.242299 4.1:-68035328 MS.gene83322:CDS
ACAAACTTGTCTCACTTTAC+AGG 0.244618 4.1:-68035676 MS.gene83322:CDS
CTTCTGCATTCTGGAAATTA+TGG 0.253483 4.1:-68036133 MS.gene83322:CDS
CCCTGTCTCTGCTTCCTTCT+CGG 0.262332 4.1:+68036995 None:intergenic
CTCATCTTGACCTTTGGTTT+TGG 0.279974 4.1:+68035884 None:intergenic
AGGAAGCAGAGACAGGGATA+TGG 0.287407 4.1:-68036989 MS.gene83322:CDS
CTTTGCTAGCTGTGCTTGTT+TGG 0.291419 4.1:+68036267 None:intergenic
CTCGGTCTTCTCTGTGATTC+CGG 0.301582 4.1:+68037013 None:intergenic
TCCTGTTTAGTTGGCTTGAT+AGG 0.304342 4.1:+68035989 None:intergenic
TCACCTTAGCTATACGCCTT+TGG 0.310566 4.1:+68035948 None:intergenic
ATTAAGTTCGGATTGATATC+AGG 0.315138 4.1:+68036232 None:intergenic
CACCTTAGCTATACGCCTTT+GGG 0.317473 4.1:+68035949 None:intergenic
AAGCAACCTTAGCACATTAA+AGG 0.318390 4.1:-68036521 MS.gene83322:CDS
TTCTTCTGCTCCTGTTTAGT+TGG 0.318787 4.1:+68035980 None:intergenic
GACATGGCACTTCTGCATTC+TGG 0.331029 4.1:-68036142 MS.gene83322:CDS
CATCAGAATCGTGCCGGTTC+CGG 0.331455 4.1:+68037058 None:intergenic
GTTCATCTATTTCACGTCCC+TGG 0.343803 4.1:+68036572 None:intergenic
GGTGGAGAGGCGGGCTCAGC+AGG 0.346160 4.1:+68036019 None:intergenic
ATGATAAGAGAATTAGGGTT+AGG 0.350518 4.1:-68036834 MS.gene83322:CDS
TGAAATACTAAAACCTGTAT+TGG 0.355353 4.1:-68036467 MS.gene83322:CDS
GAACCTATTGAAGCTCGATT+TGG 0.361063 4.1:+68035400 None:intergenic
AGATGAAGGCAATATGAAAA+TGG 0.363556 4.1:-68036086 MS.gene83322:CDS
TGCAGCTGCTGAGCGTGAGC+AGG 0.369144 4.1:-68035792 MS.gene83322:CDS
AAGAAGGAACGTAGGAGATT+TGG 0.374683 4.1:-68036799 MS.gene83322:CDS
AAATTACTCATCTTGACCTT+TGG 0.381357 4.1:+68035878 None:intergenic
ACCGTAACCATCACCGGAAC+CGG 0.388029 4.1:-68037071 MS.gene83322:CDS
ATTGGATGATAAGAGAATTA+GGG 0.389557 4.1:-68036839 MS.gene83322:CDS
TGTTTGTGGAGGAAGGAAAA+TGG 0.392737 4.1:-68036357 MS.gene83322:CDS
TCTGTAATTTCTATTAAGTT+CGG 0.393587 4.1:+68036220 None:intergenic
AGCAAGTCAATTAAGAGGTA+TGG 0.404160 4.1:-68035533 MS.gene83322:CDS
CAAGTTTGTCCAATGTATTT+GGG 0.405319 4.1:+68035690 None:intergenic
TTCTTCTCACGCAGCTCAGC+AGG 0.405655 4.1:+68035734 None:intergenic
TTGCCAAATCGAGCTTCAAT+AGG 0.406342 4.1:-68035403 MS.gene83322:CDS
TCAAAATGAGGATTAGATTC+AGG 0.407433 4.1:+68036436 None:intergenic
ACCTATCAAGCCAACTAAAC+AGG 0.413749 4.1:-68035990 MS.gene83322:CDS
TTCATCTATTTCACGTCCCT+GGG 0.414957 4.1:+68036573 None:intergenic
ATAAACTCTAGAGCGGGCCT+TGG 0.420863 4.1:+68035634 None:intergenic
CTCGATACTCCTCGCATAAG+AGG 0.421449 4.1:-68036894 MS.gene83322:CDS
ATATAGCGATGATCGGGAAT+TGG 0.423849 4.1:-68036857 MS.gene83322:CDS
ACCGAGAAGGAAGCAGAGAC+AGG 0.430015 4.1:-68036996 MS.gene83322:CDS
TTTAATGTGCTAAGGTTGCT+TGG 0.430099 4.1:+68036523 None:intergenic
CACCACTCAATATCCGGAAT+CGG 0.431295 4.1:+68036166 None:intergenic
GGAAGCAGAGACAGGGATAT+GGG 0.431480 4.1:-68036988 MS.gene83322:CDS
GGCTCAGCAGGCGGTTCAAT+AGG 0.433119 4.1:+68036031 None:intergenic
CAAAGCTCCTGCGGCCTAAG+AGG 0.436122 4.1:-68036390 MS.gene83322:CDS
TGTTCTTCGTCTTGACGCCC+AGG 0.441585 4.1:-68036590 MS.gene83322:CDS
GTTAGCGTTGTTGTGGTTGA+AGG 0.443663 4.1:-68035560 MS.gene83322:CDS
GTTACGGTCGCGGTCATGTT+CGG 0.446270 4.1:+68037086 None:intergenic
ATGTCCCACCACTCAATATC+CGG 0.449028 4.1:+68036160 None:intergenic
AACAGAAAATTCATCCTCTT+AGG 0.449563 4.1:+68036376 None:intergenic
AAAACTGAAGGACCCGATTC+CGG 0.455391 4.1:-68036179 MS.gene83322:CDS
TGATAAGAGAATTAGGGTTA+GGG 0.455771 4.1:-68036833 MS.gene83322:CDS
GCCGGTTCCGGTGATGGTTA+CGG 0.466812 4.1:+68037070 None:intergenic
TCCGGTGATGGTTACGGTCG+CGG 0.470181 4.1:+68037076 None:intergenic
TGCTGAGCTGCGTGAGAAGA+AGG 0.474449 4.1:-68035732 MS.gene83322:CDS
AGATCCCACCCGGCTTGAAA+AGG 0.474598 4.1:-68035825 MS.gene83322:CDS
CATTTGTATAGTTGACAGCT+TGG 0.476752 4.1:+68035303 None:intergenic
GGTTGAGGTGGTGGAGAGGC+GGG 0.476862 4.1:+68036010 None:intergenic
AATCGTGCCGGTTCCGGTGA+TGG 0.479993 4.1:+68037064 None:intergenic
AGGAGATTTGGTGATAAACT+TGG 0.481118 4.1:-68036787 MS.gene83322:CDS
GTGAGCAGGCTCACATAGAT+AGG 0.485650 4.1:-68035778 MS.gene83322:CDS
GCTCAACAAAATCGTTTGAC+TGG 0.491510 4.1:-68035605 MS.gene83322:CDS
TAGGGTTTCTGAAGCAAAGA+AGG 0.491982 4.1:-68036815 MS.gene83322:CDS
TTCAGAAGAAAGCACACAGT+TGG 0.492012 4.1:-68036659 MS.gene83322:CDS
AGAAGAATATAGCGATGATC+GGG 0.497936 4.1:-68036863 MS.gene83322:CDS
AGTAATTTACATAAGGTGCT+AGG 0.498879 4.1:-68035863 MS.gene83322:CDS
TGGGCGTCAAGACGAAGAAC+AGG 0.500740 4.1:+68036592 None:intergenic
TCAGGATCGACATCCAATAC+AGG 0.501479 4.1:+68036454 None:intergenic
CAAACTTGTCTCACTTTACA+GGG 0.502069 4.1:-68035675 MS.gene83322:CDS
CAAGATGAGTAATTTACATA+AGG 0.502552 4.1:-68035870 MS.gene83322:CDS
AGGTTGAGGTGGTGGAGAGG+CGG 0.504638 4.1:+68036009 None:intergenic
GCCTTCATCTATAGTACCGT+TGG 0.504964 4.1:+68036099 None:intergenic
GGAGCCTTGGTTGGTTTCTG+AGG 0.506975 4.1:+68036613 None:intergenic
TGCCTTAGCAAAGGCTAAGA+AGG 0.507867 4.1:-68036746 MS.gene83322:CDS
AACACATTTATTGGCATCGT+CGG 0.510492 4.1:+68035445 None:intergenic
ACCACTCAATATCCGGAATC+GGG 0.511345 4.1:+68036167 None:intergenic
GCAAGTCAATTAAGAGGTAT+GGG 0.512247 4.1:-68035532 MS.gene83322:CDS
TCAGAAGAAAGCACACAGTT+GGG 0.515196 4.1:-68036658 MS.gene83322:CDS
TAAACTCTAGAGCGGGCCTT+GGG 0.515382 4.1:+68035635 None:intergenic
CGAAGAACAGGAGCCTTGGT+TGG 0.517067 4.1:+68036604 None:intergenic
TTATGCTTAGACGTATCAAA+TGG 0.519358 4.1:-68035505 MS.gene83322:CDS
GTGGAAGCAAGTCAATTAAG+AGG 0.522404 4.1:-68035538 MS.gene83322:CDS
GGCTTGATAGGTTGAGGTGG+TGG 0.526396 4.1:+68036001 None:intergenic
ATCGAAGCGCGATGAAGAGA+GGG 0.529353 4.1:-68036923 MS.gene83322:CDS
GTTTGATGACCCAAATACAT+TGG 0.529532 4.1:-68035699 MS.gene83322:CDS
ACTTTCATGTGGAACATCCT+CGG 0.530971 4.1:-68036054 MS.gene83322:CDS
GAGCCTTGGTTGGTTTCTGA+GGG 0.533893 4.1:+68036614 None:intergenic
GACCCAAAGGCGTATAGCTA+AGG 0.534462 4.1:-68035951 MS.gene83322:CDS
AGCTCAAGCAAAAGAGCAGA+AGG 0.535132 4.1:-68036290 MS.gene83322:CDS
TGATGGTGTTAGCGTTGTTG+TGG 0.536624 4.1:-68035567 MS.gene83322:CDS
GAGAAGAATATAGCGATGAT+CGG 0.536885 4.1:-68036864 MS.gene83322:CDS
ACCGCGACCGTAACCATCAC+CGG 0.538461 4.1:-68037077 MS.gene83322:CDS
CCCATTCTCTCATCAAAATG+AGG 0.549338 4.1:+68036424 None:intergenic
CAAACAAGCACAGCTAGCAA+AGG 0.555686 4.1:-68036266 MS.gene83322:CDS
TTCTGAGGGACAGTAACGTC+GGG 0.556866 4.1:+68036628 None:intergenic
AAGACGAAGAACAGGAGCCT+TGG 0.557281 4.1:+68036600 None:intergenic
TTCATCTATAGTACCGTTGG+CGG 0.558630 4.1:+68036102 None:intergenic
AATCGAAGCGCGATGAAGAG+AGG 0.561052 4.1:-68036924 MS.gene83322:CDS
GACGAAAGAGAGGGTAGCAA+AGG 0.561832 4.1:-68036955 MS.gene83322:CDS
GGAGAGGCGGGCTCAGCAGG+CGG 0.561936 4.1:+68036022 None:intergenic
TGTTGACCTTTAATGTGCTA+AGG 0.561959 4.1:+68036515 None:intergenic
GTTCTTCGTCTTGACGCCCA+GGG 0.562372 4.1:-68036589 MS.gene83322:CDS
AATTCATCCTCTTAGGCCGC+AGG 0.563858 4.1:+68036383 None:intergenic
GTAATTTACATAAGGTGCTA+GGG 0.564338 4.1:-68035862 MS.gene83322:CDS
AGCGTTGTTGTGGTTGAAGG+TGG 0.565444 4.1:-68035557 MS.gene83322:CDS
GGATATTGAGTGGTGGGACA+TGG 0.570746 4.1:-68036158 MS.gene83322:CDS
TTAGTTGGCTTGATAGGTTG+AGG 0.576255 4.1:+68035995 None:intergenic
GGAAGAATTCAACTTTCATG+TGG 0.576369 4.1:-68036065 MS.gene83322:CDS
AGCCTTCTTAGCCTTTGCTA+AGG 0.581971 4.1:+68036744 None:intergenic
GGTCAGATCGATGATGGCGG+TGG 0.582301 4.1:+68037034 None:intergenic
CCGAGAAGGAAGCAGAGACA+GGG 0.584656 4.1:-68036995 MS.gene83322:CDS
GTTGGCTTGATAGGTTGAGG+TGG 0.586185 4.1:+68035998 None:intergenic
GCCAACGGTACTATAGATGA+AGG 0.586217 4.1:-68036100 MS.gene83322:CDS
CTAAGGCATCACTACTAGAG+AGG 0.588190 4.1:+68036761 None:intergenic
GATTCCGGTCAGATCGATGA+TGG 0.589596 4.1:+68037028 None:intergenic
ATTAACATAAACTCTAGAGC+GGG 0.591581 4.1:+68035628 None:intergenic
TGCTTAGACGTATCAAATGG+AGG 0.592616 4.1:-68035502 MS.gene83322:CDS
AAAGAGAGGGTAGCAAAGGT+AGG 0.594676 4.1:-68036951 MS.gene83322:CDS
TATGGTGACATTGCCGCCAA+CGG 0.595136 4.1:-68036115 MS.gene83322:CDS
GGATGTGCGGTGATTTGTGA+TGG 0.599326 4.1:-68035584 MS.gene83322:CDS
TCTATCTTTCCTCTTATGCG+AGG 0.606208 4.1:+68036885 None:intergenic
GACAGGGATATGGGATACGA+TGG 0.607091 4.1:-68036979 MS.gene83322:CDS
GGTGGTCATCAGAATCGTGC+CGG 0.608684 4.1:+68037052 None:intergenic
ACCGCCATCATCGATCTGAC+CGG 0.610844 4.1:-68037032 MS.gene83322:CDS
GCTTAGACGTATCAAATGGA+GGG 0.611542 4.1:-68035501 MS.gene83322:CDS
CGATTCCGGATATTGAGTGG+TGG 0.614030 4.1:-68036165 MS.gene83322:CDS
AAATGACCTCTCTCATCCCA+AGG 0.616566 4.1:-68035651 MS.gene83322:CDS
TGTAATGAAAGCAAAACTGA+AGG 0.617069 4.1:-68036191 MS.gene83322:CDS
ACAGCTTGGTCCCAATAATG+AGG 0.617442 4.1:+68035317 None:intergenic
GAATTTGAGTTATTCAACTG+AGG 0.620565 4.1:+68036679 None:intergenic
TAGTAGTGATGCCTTAGCAA+AGG 0.620911 4.1:-68036755 MS.gene83322:CDS
ATACGATGGAGACGAAAGAG+AGG 0.628066 4.1:-68036965 MS.gene83322:CDS
GCAGGCGGTTCAATAGGCCG+AGG 0.628346 4.1:+68036037 None:intergenic
CATAGAACCGCCAAAACCAA+AGG 0.629032 4.1:-68035894 MS.gene83322:CDS
GATTCCGGATATTGAGTGGT+GGG 0.629362 4.1:-68036164 MS.gene83322:CDS
CGACAGGAGATGATTAGACA+TGG 0.631416 4.1:-68035920 MS.gene83322:CDS
CCAATAAATGTGTTCTTGTG+TGG 0.635554 4.1:-68035436 MS.gene83322:CDS
AAATGTGTTCTTGTGTGGCA+AGG 0.639668 4.1:-68035431 MS.gene83322:CDS
GATAGGTTGAGGTGGTGGAG+AGG 0.641107 4.1:+68036006 None:intergenic
TTTCTGAGGGACAGTAACGT+CGG 0.642738 4.1:+68036627 None:intergenic
ACCCGATTCCGGATATTGAG+TGG 0.647460 4.1:-68036168 MS.gene83322:CDS
AGCGGGCCTTGGGATGAGAG+AGG 0.647591 4.1:+68035645 None:intergenic
AGAAGAAACTAAAGACCCAA+AGG 0.655642 4.1:-68035964 MS.gene83322:CDS
GGACGTGAAATAGATGAACA+TGG 0.655823 4.1:-68036568 MS.gene83322:CDS
ACGAGAGAGACAAATACGAT+AGG 0.661747 4.1:-68037116 MS.gene83322:CDS
GAAGCGCGATGAAGAGAGGG+AGG 0.664190 4.1:-68036920 MS.gene83322:CDS
AATCACAGAGAAGACCGAGA+AGG 0.670001 4.1:-68037009 MS.gene83322:CDS
TACGATGGAGACGAAAGAGA+GGG 0.671943 4.1:-68036964 MS.gene83322:CDS
CTGAAGCAAAGAAGGAACGT+AGG 0.673233 4.1:-68036807 MS.gene83322:CDS
CATTAACATAAACTCTAGAG+CGG 0.690364 4.1:+68035627 None:intergenic
AAATCGTTTGACTGGATGTG+CGG 0.693768 4.1:-68035597 MS.gene83322:CDS
TCGACAAAACAAAGCTCCTG+CGG 0.696622 4.1:-68036399 MS.gene83322:CDS
TCCGGTCAGATCGATGATGG+CGG 0.696675 4.1:+68037031 None:intergenic
AAGCAACTCAAGATCCCACC+CGG 0.703568 4.1:-68035835 MS.gene83322:CDS
TGTCCCTCAGAAACCAACCA+AGG 0.741969 4.1:-68036617 MS.gene83322:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATTGAAGAGTAAATT+TGG - chr4.1:68036093-68036112 MS.gene83322:CDS 15.0%
!! TCTGTAATTTCTATTAAGTT+CGG + chr4.1:68036192-68036211 None:intergenic 20.0%
! AATTGGATGATAAGAGAATT+AGG - chr4.1:68035569-68035588 MS.gene83322:CDS 25.0%
! ATTGGATGATAAGAGAATTA+GGG - chr4.1:68035570-68035589 MS.gene83322:CDS 25.0%
! CAAGATGAGTAATTTACATA+AGG - chr4.1:68036539-68036558 MS.gene83322:CDS 25.0%
! TGAAATACTAAAACCTGTAT+TGG - chr4.1:68035942-68035961 MS.gene83322:CDS 25.0%
AAATTACTCATCTTGACCTT+TGG + chr4.1:68036534-68036553 None:intergenic 30.0%
AACAGAAAATTCATCCTCTT+AGG + chr4.1:68036036-68036055 None:intergenic 30.0%
ACAAGTTTGTCCAATGTATT+TGG + chr4.1:68036723-68036742 None:intergenic 30.0%
AGATGAAGGCAATATGAAAA+TGG - chr4.1:68036323-68036342 MS.gene83322:CDS 30.0%
ATGATAAGAGAATTAGGGTT+AGG - chr4.1:68035575-68035594 MS.gene83322:CDS 30.0%
ATTAAGTTCGGATTGATATC+AGG + chr4.1:68036180-68036199 None:intergenic 30.0%
CAAGTTTGTCCAATGTATTT+GGG + chr4.1:68036722-68036741 None:intergenic 30.0%
TCAAAATGAGGATTAGATTC+AGG + chr4.1:68035976-68035995 None:intergenic 30.0%
TGATAAGAGAATTAGGGTTA+GGG - chr4.1:68035576-68035595 MS.gene83322:CDS 30.0%
TGTAATGAAAGCAAAACTGA+AGG - chr4.1:68036218-68036237 MS.gene83322:CDS 30.0%
TTATGCTTAGACGTATCAAA+TGG - chr4.1:68036904-68036923 MS.gene83322:CDS 30.0%
! AGTAATTTACATAAGGTGCT+AGG - chr4.1:68036546-68036565 MS.gene83322:CDS 30.0%
! CATTAACATAAACTCTAGAG+CGG + chr4.1:68036785-68036804 None:intergenic 30.0%
! GAATTTGAGTTATTCAACTG+AGG + chr4.1:68035733-68035752 None:intergenic 30.0%
! GTAATTTACATAAGGTGCTA+GGG - chr4.1:68036547-68036566 MS.gene83322:CDS 30.0%
!! ATTAACATAAACTCTAGAGC+GGG + chr4.1:68036784-68036803 None:intergenic 30.0%
AACACATTTATTGGCATCGT+CGG + chr4.1:68036967-68036986 None:intergenic 35.0%
AAGCAACCTTAGCACATTAA+AGG - chr4.1:68035888-68035907 MS.gene83322:CDS 35.0%
ACAAACTTGTCTCACTTTAC+AGG - chr4.1:68036733-68036752 MS.gene83322:CDS 35.0%
AGAAGAAACTAAAGACCCAA+AGG - chr4.1:68036445-68036464 MS.gene83322:CDS 35.0%
AGAAGAATATAGCGATGATC+GGG - chr4.1:68035546-68035565 MS.gene83322:CDS 35.0%
AGCAAGTCAATTAAGAGGTA+TGG - chr4.1:68036876-68036895 MS.gene83322:CDS 35.0%
CAAACTTGTCTCACTTTACA+GGG - chr4.1:68036734-68036753 MS.gene83322:CDS 35.0%
CATTTGTATAGTTGACAGCT+TGG + chr4.1:68037109-68037128 None:intergenic 35.0%
CCAATAAATGTGTTCTTGTG+TGG - chr4.1:68036973-68036992 MS.gene83322:CDS 35.0%
CCACACAAGAACACATTTAT+TGG + chr4.1:68036976-68036995 None:intergenic 35.0%
GAGAAGAATATAGCGATGAT+CGG - chr4.1:68035545-68035564 MS.gene83322:CDS 35.0%
GGAAGAATTCAACTTTCATG+TGG - chr4.1:68036344-68036363 MS.gene83322:CDS 35.0%
TGTTGACCTTTAATGTGCTA+AGG + chr4.1:68035897-68035916 None:intergenic 35.0%
TTTAATGTGCTAAGGTTGCT+TGG + chr4.1:68035889-68035908 None:intergenic 35.0%
! AATTTTCTGTTTGTGGAGGA+AGG - chr4.1:68036045-68036064 MS.gene83322:CDS 35.0%
! CTTCTGCATTCTGGAAATTA+TGG - chr4.1:68036276-68036295 MS.gene83322:CDS 35.0%
! GAGGATGAATTTTCTGTTTG+TGG - chr4.1:68036038-68036057 MS.gene83322:CDS 35.0%
! GATGAATTTTCTGTTTGTGG+AGG - chr4.1:68036041-68036060 MS.gene83322:CDS 35.0%
! GCAAGTCAATTAAGAGGTAT+GGG - chr4.1:68036877-68036896 MS.gene83322:CDS 35.0%
! GTAAAGTTTTTGTGGATGCT+GGG - chr4.1:68037066-68037085 MS.gene83322:CDS 35.0%
! GTTTGATGACCCAAATACAT+TGG - chr4.1:68036710-68036729 MS.gene83322:CDS 35.0%
! TAAAGTTTTTGTGGATGCTG+GGG - chr4.1:68037067-68037086 MS.gene83322:CDS 35.0%
!! AGGAGATTTGGTGATAAACT+TGG - chr4.1:68035622-68035641 MS.gene83322:CDS 35.0%
!! CCTCATTTTGATGAGAGAAT+GGG - chr4.1:68035985-68036004 MS.gene83322:CDS 35.0%
!! TCCTCATTTTGATGAGAGAA+TGG - chr4.1:68035984-68036003 MS.gene83322:CDS 35.0%
AAATCGTTTGACTGGATGTG+CGG - chr4.1:68036812-68036831 MS.gene83322:CDS 40.0%
AAATGTGTTCTTGTGTGGCA+AGG - chr4.1:68036978-68036997 MS.gene83322:CDS 40.0%
AAGAAGGAACGTAGGAGATT+TGG - chr4.1:68035610-68035629 MS.gene83322:CDS 40.0%
ACCTATCAAGCCAACTAAAC+AGG - chr4.1:68036419-68036438 MS.gene83322:CDS 40.0%
ACGAGAGAGACAAATACGAT+AGG - chr4.1:68035293-68035312 MS.gene83322:CDS 40.0%
ACTTTCATGTGGAACATCCT+CGG - chr4.1:68036355-68036374 MS.gene83322:CDS 40.0%
ATATAGCGATGATCGGGAAT+TGG - chr4.1:68035552-68035571 MS.gene83322:CDS 40.0%
CCCATTCTCTCATCAAAATG+AGG + chr4.1:68035988-68036007 None:intergenic 40.0%
GAACCTATTGAAGCTCGATT+TGG + chr4.1:68037012-68037031 None:intergenic 40.0%
GCTCAACAAAATCGTTTGAC+TGG - chr4.1:68036804-68036823 MS.gene83322:CDS 40.0%
GCTTAGACGTATCAAATGGA+GGG - chr4.1:68036908-68036927 MS.gene83322:CDS 40.0%
GGACGTGAAATAGATGAACA+TGG - chr4.1:68035841-68035860 MS.gene83322:CDS 40.0%
GTGGAAGCAAGTCAATTAAG+AGG - chr4.1:68036871-68036890 MS.gene83322:CDS 40.0%
TAGTAGTGATGCCTTAGCAA+AGG - chr4.1:68035654-68035673 MS.gene83322:CDS 40.0%
TCTATCTTTCCTCTTATGCG+AGG + chr4.1:68035527-68035546 None:intergenic 40.0%
TGCTTAGACGTATCAAATGG+AGG - chr4.1:68036907-68036926 MS.gene83322:CDS 40.0%
TGTTTGTGGAGGAAGGAAAA+TGG - chr4.1:68036052-68036071 MS.gene83322:CDS 40.0%
TTCATCTATAGTACCGTTGG+CGG + chr4.1:68036310-68036329 None:intergenic 40.0%
TTCATCTATTTCACGTCCCT+GGG + chr4.1:68035839-68035858 None:intergenic 40.0%
TTCTTCTGCTCCTGTTTAGT+TGG + chr4.1:68036432-68036451 None:intergenic 40.0%
TTGCCAAATCGAGCTTCAAT+AGG - chr4.1:68037006-68037025 MS.gene83322:CDS 40.0%
! AGCTGCTCGTAAAGTTTTTG+TGG - chr4.1:68037058-68037077 MS.gene83322:CDS 40.0%
! CGTAAAGTTTTTGTGGATGC+TGG - chr4.1:68037065-68037084 MS.gene83322:CDS 40.0%
! TCAGAAGAAAGCACACAGTT+GGG - chr4.1:68035751-68035770 MS.gene83322:CDS 40.0%
! TTCAGAAGAAAGCACACAGT+TGG - chr4.1:68035750-68035769 MS.gene83322:CDS 40.0%
!! CTCATCTTGACCTTTGGTTT+TGG + chr4.1:68036528-68036547 None:intergenic 40.0%
!! TAGGGTTTCTGAAGCAAAGA+AGG - chr4.1:68035594-68035613 MS.gene83322:CDS 40.0%
!! TCCTGTTTAGTTGGCTTGAT+AGG + chr4.1:68036423-68036442 None:intergenic 40.0%
!! TTAGTTGGCTTGATAGGTTG+AGG + chr4.1:68036417-68036436 None:intergenic 40.0%
!!! ATCTTGACCTTTGGTTTTGG+CGG + chr4.1:68036525-68036544 None:intergenic 40.0%
AAAACTGAAGGACCCGATTC+CGG - chr4.1:68036230-68036249 MS.gene83322:CDS 45.0%
AAAGAGAGGGTAGCAAAGGT+AGG - chr4.1:68035458-68035477 MS.gene83322:CDS 45.0%
AAATGACCTCTCTCATCCCA+AGG - chr4.1:68036758-68036777 MS.gene83322:CDS 45.0%
AATCACAGAGAAGACCGAGA+AGG - chr4.1:68035400-68035419 MS.gene83322:CDS 45.0%
ACAGCTTGGTCCCAATAATG+AGG + chr4.1:68037095-68037114 None:intergenic 45.0%
ACCACTCAATATCCGGAATC+GGG + chr4.1:68036245-68036264 None:intergenic 45.0%
AGCTAAGGTGAAAAAGCGAC+AGG - chr4.1:68036473-68036492 MS.gene83322:CDS 45.0%
AGCTCAAGCAAAAGAGCAGA+AGG - chr4.1:68036119-68036138 MS.gene83322:CDS 45.0%
ATACGATGGAGACGAAAGAG+AGG - chr4.1:68035444-68035463 MS.gene83322:CDS 45.0%
ATGCTGGGGTTCCTCATTAT+TGG - chr4.1:68037081-68037100 MS.gene83322:CDS 45.0%
ATGTCCCACCACTCAATATC+CGG + chr4.1:68036252-68036271 None:intergenic 45.0%
CAAACAAGCACAGCTAGCAA+AGG - chr4.1:68036143-68036162 MS.gene83322:CDS 45.0%
CACCACTCAATATCCGGAAT+CGG + chr4.1:68036246-68036265 None:intergenic 45.0%
CACCTTAGCTATACGCCTTT+GGG + chr4.1:68036463-68036482 None:intergenic 45.0%
CATAGAACCGCCAAAACCAA+AGG - chr4.1:68036515-68036534 MS.gene83322:CDS 45.0%
CGACAGGAGATGATTAGACA+TGG - chr4.1:68036489-68036508 MS.gene83322:CDS 45.0%
CTGAAGCAAAGAAGGAACGT+AGG - chr4.1:68035602-68035621 MS.gene83322:CDS 45.0%
CTTTGCTAGCTGTGCTTGTT+TGG + chr4.1:68036145-68036164 None:intergenic 45.0%
GATTCCGGATATTGAGTGGT+GGG - chr4.1:68036245-68036264 MS.gene83322:CDS 45.0%
GCCAACGGTACTATAGATGA+AGG - chr4.1:68036309-68036328 MS.gene83322:CDS 45.0%
GCCTTCATCTATAGTACCGT+TGG + chr4.1:68036313-68036332 None:intergenic 45.0%
GTTAGCGTTGTTGTGGTTGA+AGG - chr4.1:68036849-68036868 MS.gene83322:CDS 45.0%
GTTCATCTATTTCACGTCCC+TGG + chr4.1:68035840-68035859 None:intergenic 45.0%
TACGATGGAGACGAAAGAGA+GGG - chr4.1:68035445-68035464 MS.gene83322:CDS 45.0%
TCACCTTAGCTATACGCCTT+TGG + chr4.1:68036464-68036483 None:intergenic 45.0%
TCAGGATCGACATCCAATAC+AGG + chr4.1:68035958-68035977 None:intergenic 45.0%
TCGACAAAACAAAGCTCCTG+CGG - chr4.1:68036010-68036029 MS.gene83322:CDS 45.0%
TGCCTTAGCAAAGGCTAAGA+AGG - chr4.1:68035663-68035682 MS.gene83322:CDS 45.0%
TGCTGGGGTTCCTCATTATT+GGG - chr4.1:68037082-68037101 MS.gene83322:CDS 45.0%
! AGCCTTCTTAGCCTTTGCTA+AGG + chr4.1:68035668-68035687 None:intergenic 45.0%
! CTAAGGCATCACTACTAGAG+AGG + chr4.1:68035651-68035670 None:intergenic 45.0%
! TGATGGTGTTAGCGTTGTTG+TGG - chr4.1:68036842-68036861 MS.gene83322:CDS 45.0%
! TTTCTGAGGGACAGTAACGT+CGG + chr4.1:68035785-68035804 None:intergenic 45.0%
!! ACGTACTTCCTTTTCAAGCC+GGG + chr4.1:68036595-68036614 None:intergenic 45.0%
!! GACGTACTTCCTTTTCAAGC+CGG + chr4.1:68036596-68036615 None:intergenic 45.0%
AAGACGAAGAACAGGAGCCT+TGG + chr4.1:68035812-68035831 None:intergenic 50.0%
AAGCAACTCAAGATCCCACC+CGG - chr4.1:68036574-68036593 MS.gene83322:CDS 50.0%
AATCGAAGCGCGATGAAGAG+AGG - chr4.1:68035485-68035504 MS.gene83322:CDS 50.0%
AATTCATCCTCTTAGGCCGC+AGG + chr4.1:68036029-68036048 None:intergenic 50.0%
ACCCGATTCCGGATATTGAG+TGG - chr4.1:68036241-68036260 MS.gene83322:CDS 50.0%
AGCGTTGTTGTGGTTGAAGG+TGG - chr4.1:68036852-68036871 MS.gene83322:CDS 50.0%
AGGAAGCAGAGACAGGGATA+TGG - chr4.1:68035420-68035439 MS.gene83322:CDS 50.0%
ATCGAAGCGCGATGAAGAGA+GGG - chr4.1:68035486-68035505 MS.gene83322:CDS 50.0%
CGATTCCGGATATTGAGTGG+TGG - chr4.1:68036244-68036263 MS.gene83322:CDS 50.0%
CTCGATACTCCTCGCATAAG+AGG - chr4.1:68035515-68035534 MS.gene83322:CDS 50.0%
CTCGGTCTTCTCTGTGATTC+CGG + chr4.1:68035399-68035418 None:intergenic 50.0%
GACAGGGATATGGGATACGA+TGG - chr4.1:68035430-68035449 MS.gene83322:CDS 50.0%
GACATGGCACTTCTGCATTC+TGG - chr4.1:68036267-68036286 MS.gene83322:CDS 50.0%
GACGAAAGAGAGGGTAGCAA+AGG - chr4.1:68035454-68035473 MS.gene83322:CDS 50.0%
GATTCCGGTCAGATCGATGA+TGG + chr4.1:68035384-68035403 None:intergenic 50.0%
GGAAGCAGAGACAGGGATAT+GGG - chr4.1:68035421-68035440 MS.gene83322:CDS 50.0%
GTGAGCAGGCTCACATAGAT+AGG - chr4.1:68036631-68036650 MS.gene83322:CDS 50.0%
TATGGTGACATTGCCGCCAA+CGG - chr4.1:68036294-68036313 MS.gene83322:CDS 50.0%
TGTCCCTCAGAAACCAACCA+AGG - chr4.1:68035792-68035811 MS.gene83322:CDS 50.0%
! GACCCAAAGGCGTATAGCTA+AGG - chr4.1:68036458-68036477 MS.gene83322:CDS 50.0%
! GGATATTGAGTGGTGGGACA+TGG - chr4.1:68036251-68036270 MS.gene83322:CDS 50.0%
! GGATGTGCGGTGATTTGTGA+TGG - chr4.1:68036825-68036844 MS.gene83322:CDS 50.0%
! TTCTGAGGGACAGTAACGTC+GGG + chr4.1:68035784-68035803 None:intergenic 50.0%
!! ACTTCCTTTTCAAGCCGGGT+GGG + chr4.1:68036591-68036610 None:intergenic 50.0%
!! ATAAACTCTAGAGCGGGCCT+TGG + chr4.1:68036778-68036797 None:intergenic 50.0%
!! GAGCCTTGGTTGGTTTCTGA+GGG + chr4.1:68035798-68035817 None:intergenic 50.0%
!! GTTGGCTTGATAGGTTGAGG+TGG + chr4.1:68036414-68036433 None:intergenic 50.0%
!! TAAACTCTAGAGCGGGCCTT+GGG + chr4.1:68036777-68036796 None:intergenic 50.0%
!! TACTTCCTTTTCAAGCCGGG+TGG + chr4.1:68036592-68036611 None:intergenic 50.0%
ACCGAGAAGGAAGCAGAGAC+AGG - chr4.1:68035413-68035432 MS.gene83322:CDS 55.0%
ACCGCCATCATCGATCTGAC+CGG - chr4.1:68035377-68035396 MS.gene83322:CDS 55.0%
ACCGTAACCATCACCGGAAC+CGG - chr4.1:68035338-68035357 MS.gene83322:CDS 55.0%
CCCTGTCTCTGCTTCCTTCT+CGG + chr4.1:68035417-68035436 None:intergenic 55.0%
CCGAGAAGGAAGCAGAGACA+GGG - chr4.1:68035414-68035433 MS.gene83322:CDS 55.0%
CGAAGAACAGGAGCCTTGGT+TGG + chr4.1:68035808-68035827 None:intergenic 55.0%
GGTGGTCATCAGAATCGTGC+CGG + chr4.1:68035360-68035379 None:intergenic 55.0%
GTTACGGTCGCGGTCATGTT+CGG + chr4.1:68035326-68035345 None:intergenic 55.0%
GTTCTTCGTCTTGACGCCCA+GGG - chr4.1:68035820-68035839 MS.gene83322:CDS 55.0%
TGCTGAGCTGCGTGAGAAGA+AGG - chr4.1:68036677-68036696 MS.gene83322:CDS 55.0%
TGGGCGTCAAGACGAAGAAC+AGG + chr4.1:68035820-68035839 None:intergenic 55.0%
TGTTCTTCGTCTTGACGCCC+AGG - chr4.1:68035819-68035838 MS.gene83322:CDS 55.0%
TTCTTCTCACGCAGCTCAGC+AGG + chr4.1:68036678-68036697 None:intergenic 55.0%
! AGATCCCACCCGGCTTGAAA+AGG - chr4.1:68036584-68036603 MS.gene83322:CDS 55.0%
! GGCTTGATAGGTTGAGGTGG+TGG + chr4.1:68036411-68036430 None:intergenic 55.0%
! TCCGGTCAGATCGATGATGG+CGG + chr4.1:68035381-68035400 None:intergenic 55.0%
!! CATCAGAATCGTGCCGGTTC+CGG + chr4.1:68035354-68035373 None:intergenic 55.0%
!! GATAGGTTGAGGTGGTGGAG+AGG + chr4.1:68036406-68036425 None:intergenic 55.0%
!! GGAGCCTTGGTTGGTTTCTG+AGG + chr4.1:68035799-68035818 None:intergenic 55.0%
ACCGCGACCGTAACCATCAC+CGG - chr4.1:68035332-68035351 MS.gene83322:CDS 60.0%
CAAAGCTCCTGCGGCCTAAG+AGG - chr4.1:68036019-68036038 MS.gene83322:CDS 60.0%
GAAGCGCGATGAAGAGAGGG+AGG - chr4.1:68035489-68035508 MS.gene83322:CDS 60.0%
GGCTCAGCAGGCGGTTCAAT+AGG + chr4.1:68036381-68036400 None:intergenic 60.0%
! GCCGGTTCCGGTGATGGTTA+CGG + chr4.1:68035342-68035361 None:intergenic 60.0%
! TCCGGTGATGGTTACGGTCG+CGG + chr4.1:68035336-68035355 None:intergenic 60.0%
!! AATCGTGCCGGTTCCGGTGA+TGG + chr4.1:68035348-68035367 None:intergenic 60.0%
!! AGGTTGAGGTGGTGGAGAGG+CGG + chr4.1:68036403-68036422 None:intergenic 60.0%
!! GGTCAGATCGATGATGGCGG+TGG + chr4.1:68035378-68035397 None:intergenic 60.0%
AGCGGGCCTTGGGATGAGAG+AGG + chr4.1:68036767-68036786 None:intergenic 65.0%
GCAGGCGGTTCAATAGGCCG+AGG + chr4.1:68036375-68036394 None:intergenic 65.0%
TGCAGCTGCTGAGCGTGAGC+AGG - chr4.1:68036617-68036636 MS.gene83322:CDS 65.0%
!! GGTTGAGGTGGTGGAGAGGC+GGG + chr4.1:68036402-68036421 None:intergenic 65.0%
! GGAGAGGCGGGCTCAGCAGG+CGG + chr4.1:68036390-68036409 None:intergenic 75.0%
! GGTGGAGAGGCGGGCTCAGC+AGG + chr4.1:68036393-68036412 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 68035289 68037142 68035289 ID=MS.gene83322
chr4.1 mRNA 68035289 68037142 68035289 ID=MS.gene83322.t1;Parent=MS.gene83322
chr4.1 exon 68035289 68037142 68035289 ID=MS.gene83322.t1.exon1;Parent=MS.gene83322.t1
chr4.1 CDS 68035289 68037142 68035289 ID=cds.MS.gene83322.t1;Parent=MS.gene83322.t1
Gene Sequence

>MS.gene83322

ATGGACGAGAGAGACAAATACGATAGGCGACACTCCGAACATGACCGCGACCGTAACCATCACCGGAACCGGCACGATTCTGATGACCACCGCCATCATCGATCTGACCGGAATCACAGAGAAGACCGAGAAGGAAGCAGAGACAGGGATATGGGATACGATGGAGACGAAAGAGAGGGTAGCAAAGGTAGGTCTAAATCGAAGCGCGATGAAGAGAGGGAGGATTCTCGATACTCCTCGCATAAGAGGAAAGATAGAGAAGAATATAGCGATGATCGGGAATTGGATGATAAGAGAATTAGGGTTAGGGTTTCTGAAGCAAAGAAGGAACGTAGGAGATTTGGTGATAAACTTGGAAGCCTCTCTAGTAGTGATGCCTTAGCAAAGGCTAAGAAGGCTTTACAAATGCAGAAATTGTTGTCAGAGAAGCTGAAGAAAATTCCTCAGTTGAATAACTCAAATTCAGAAGAAAGCACACAGTTGGGTGCTACACCCGACGTTACTGTCCCTCAGAAACCAACCAAGGCTCCTGTTCTTCGTCTTGACGCCCAGGGACGTGAAATAGATGAACATGGAAATGTTGTTAATGTAACTAAGCCAAGCAACCTTAGCACATTAAAGGTCAACATTAATAAACACAAGAGAGATGCATTTGAAATACTAAAACCTGTATTGGATGTCGATCCTGAATCTAATCCTCATTTTGATGAGAGAATGGGTATCGACAAAACAAAGCTCCTGCGGCCTAAGAGGATGAATTTTCTGTTTGTGGAGGAAGGAAAATGGTCAAGAGACGCTGAATCAATAAAATTGAAGAGTAAATTTGGAGAAGCTCAAGCAAAAGAGCAGAAGGCCAAACAAGCACAGCTAGCAAAGGCAAATGCTTCTCCTGATATCAATCCGAACTTAATAGAAATTACAGAGAGAGTTGTAATGAAAGCAAAACTGAAGGACCCGATTCCGGATATTGAGTGGTGGGACATGGCACTTCTGCATTCTGGAAATTATGGTGACATTGCCGCCAACGGTACTATAGATGAAGGCAATATGAAAATGGAAGAATTCAACTTTCATGTGGAACATCCTCGGCCTATTGAACCGCCTGCTGAGCCCGCCTCTCCACCACCTCAACCTATCAAGCCAACTAAACAGGAGCAGAAGAAACTAAAGACCCAAAGGCGTATAGCTAAGGTGAAAAAGCGACAGGAGATGATTAGACATGGTGTCATAGAACCGCCAAAACCAAAGGTCAAGATGAGTAATTTACATAAGGTGCTAGGGACTGAAGCAACTCAAGATCCCACCCGGCTTGAAAAGGAAGTACGTCATGCAGCTGCTGAGCGTGAGCAGGCTCACATAGATAGGAATATTGCACGCAAGCTTACTCCTGCTGAGCTGCGTGAGAAGAAGGAAAGAAAACTGTTTGATGACCCAAATACATTGGACAAACTTGTCTCACTTTACAGGGTAAATGACCTCTCTCATCCCAAGGCCCGCTCTAGAGTTTATGTTAATGCTCAACAAAATCGTTTGACTGGATGTGCGGTGATTTGTGATGGTGTTAGCGTTGTTGTGGTTGAAGGTGGAAGCAAGTCAATTAAGAGGTATGGGAAAGTTATGCTTAGACGTATCAAATGGAGGGATGTTTCAAAAGAGAAAGAAGATAATGAAGATTCCGACGATGCCAATAAATGTGTTCTTGTGTGGCAAGGAAGTGTTGCCAAATCGAGCTTCAATAGGTTCAGTGTTCATGACTGCATCACTGAAGCAGCTGCTCGTAAAGTTTTTGTGGATGCTGGGGTTCCTCATTATTGGGACCAAGCTGTCAACTATACAAATGATGATGCTGTTTGA

Protein sequence

>MS.gene83322.t1

MDERDKYDRRHSEHDRDRNHHRNRHDSDDHRHHRSDRNHREDREGSRDRDMGYDGDEREGSKGRSKSKRDEEREDSRYSSHKRKDREEYSDDRELDDKRIRVRVSEAKKERRRFGDKLGSLSSSDALAKAKKALQMQKLLSEKLKKIPQLNNSNSEESTQLGATPDVTVPQKPTKAPVLRLDAQGREIDEHGNVVNVTKPSNLSTLKVNINKHKRDAFEILKPVLDVDPESNPHFDERMGIDKTKLLRPKRMNFLFVEEGKWSRDAESIKLKSKFGEAQAKEQKAKQAQLAKANASPDINPNLIEITERVVMKAKLKDPIPDIEWWDMALLHSGNYGDIAANGTIDEGNMKMEEFNFHVEHPRPIEPPAEPASPPPQPIKPTKQEQKKLKTQRRIAKVKKRQEMIRHGVIEPPKPKVKMSNLHKVLGTEATQDPTRLEKEVRHAAAEREQAHIDRNIARKLTPAELREKKERKLFDDPNTLDKLVSLYRVNDLSHPKARSRVYVNAQQNRLTGCAVICDGVSVVVVEGGSKSIKRYGKVMLRRIKWRDVSKEKEDNEDSDDANKCVLVWQGSVAKSSFNRFSVHDCITEAAARKVFVDAGVPHYWDQAVNYTNDDAV