Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80056.t1 | XP_013469853.1 | 95.3 | 344 | 16 | 0 | 1 | 344 | 1 | 344 | 2.20E-187 | 664.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80056.t1 | A0A072VQG9 | 95.3 | 344 | 16 | 0 | 1 | 344 | 1 | 344 | 1.6e-187 | 664.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene80056 | 0.82227 | 2.59E-53 | -1.69E-46 |
| MS.gene04986 | MS.gene80056 | 0.8117 | 6.14E-51 | -1.69E-46 |
| MS.gene050883 | MS.gene80056 | 0.804619 | 1.98E-49 | -1.69E-46 |
| MS.gene051364 | MS.gene80056 | 0.813388 | 2.63E-51 | -1.69E-46 |
| MS.gene051366 | MS.gene80056 | 0.822279 | 2.58E-53 | -1.69E-46 |
| MS.gene051367 | MS.gene80056 | 0.829506 | 4.95E-55 | -1.69E-46 |
| MS.gene052560 | MS.gene80056 | 0.809415 | 1.91E-50 | -1.69E-46 |
| MS.gene054056 | MS.gene80056 | 0.831517 | 1.60E-55 | -1.69E-46 |
| MS.gene055776 | MS.gene80056 | -0.808863 | 2.51E-50 | -1.69E-46 |
| MS.gene055942 | MS.gene80056 | 0.837793 | 4.21E-57 | -1.69E-46 |
| MS.gene056185 | MS.gene80056 | 0.805164 | 1.52E-49 | -1.69E-46 |
| MS.gene056530 | MS.gene80056 | 0.820464 | 6.77E-53 | -1.69E-46 |
| MS.gene056761 | MS.gene80056 | 0.831364 | 1.74E-55 | -1.69E-46 |
| MS.gene058109 | MS.gene80056 | 0.803053 | 4.19E-49 | -1.69E-46 |
| MS.gene058111 | MS.gene80056 | 0.805398 | 1.36E-49 | -1.69E-46 |
| MS.gene058493 | MS.gene80056 | 0.805735 | 1.16E-49 | -1.69E-46 |
| MS.gene058494 | MS.gene80056 | 0.800534 | 1.38E-48 | -1.69E-46 |
| MS.gene058628 | MS.gene80056 | 0.814557 | 1.45E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80056.t1 | MTR_1g103870 | 95.349 | 344 | 16 | 0 | 1 | 344 | 1 | 344 | 0.0 | 683 |
| MS.gene80056.t1 | MTR_1g103900 | 81.159 | 345 | 64 | 1 | 1 | 344 | 1 | 345 | 0.0 | 578 |
| MS.gene80056.t1 | MTR_1g030720 | 78.531 | 354 | 72 | 2 | 1 | 350 | 1 | 354 | 0.0 | 566 |
| MS.gene80056.t1 | MTR_1g030720 | 79.710 | 345 | 69 | 1 | 1 | 344 | 1 | 345 | 0.0 | 565 |
| MS.gene80056.t1 | MTR_1g103870 | 95.522 | 268 | 12 | 0 | 1 | 268 | 1 | 268 | 0.0 | 530 |
| MS.gene80056.t1 | MTR_1g030710 | 58.986 | 217 | 37 | 1 | 52 | 268 | 1 | 165 | 6.79e-76 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80056.t1 | AT3G54970 | 48.424 | 349 | 162 | 7 | 1 | 344 | 1 | 336 | 1.27e-100 | 301 |
| MS.gene80056.t1 | AT3G54970 | 48.837 | 301 | 137 | 6 | 1 | 297 | 1 | 288 | 1.09e-85 | 262 |
| MS.gene80056.t1 | AT3G54970 | 49.000 | 300 | 136 | 6 | 1 | 296 | 1 | 287 | 1.12e-85 | 262 |
| MS.gene80056.t1 | AT3G54970 | 49.164 | 299 | 137 | 6 | 52 | 345 | 1 | 289 | 3.41e-82 | 253 |
| MS.gene80056.t1 | AT3G54970 | 45.956 | 272 | 130 | 6 | 1 | 268 | 1 | 259 | 4.90e-68 | 215 |
| MS.gene80056.t1 | AT3G54970 | 50.000 | 250 | 111 | 5 | 52 | 297 | 1 | 240 | 2.67e-67 | 213 |
Find 75 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTTGTTACTGGTAATT+TGG | 0.120632 | 1.1:-74726091 | MS.gene80056:CDS |
| AGTTTCCAAGCTGGCAAATT+TGG | 0.216666 | 1.1:+74726204 | None:intergenic |
| ACTTATGTTCCTCCTCAATT+TGG | 0.238078 | 1.1:-74725994 | MS.gene80056:CDS |
| TTCCTCCTCAATTTGGTATT+CGG | 0.238577 | 1.1:-74725987 | MS.gene80056:CDS |
| GTGCTTCATGCTTGATGTTT+TGG | 0.241820 | 1.1:-74726332 | MS.gene80056:CDS |
| GGGAAAGCCCCGTCTGATTA+TGG | 0.267527 | 1.1:-74724961 | MS.gene80056:CDS |
| ATCAGTGATGGTGTTCTTCC+AGG | 0.297425 | 1.1:-74724904 | MS.gene80056:CDS |
| ATCATTACAACTCTTGTTAC+TGG | 0.301146 | 1.1:-74726099 | MS.gene80056:CDS |
| CATTTGGCTGTTGGCGGCTA+TGG | 0.301439 | 1.1:-74725952 | MS.gene80056:CDS |
| TCCTCCTCAATTTGGTATTC+GGG | 0.303663 | 1.1:-74725986 | MS.gene80056:CDS |
| GCAACATGCAGATAGTATTC+AGG | 0.308908 | 1.1:-74724008 | MS.gene80056:CDS |
| CATGGTCAAAACATGAAATC+TGG | 0.311226 | 1.1:-74724528 | MS.gene80056:CDS |
| GGTCCATGATATATCCTTCC+AGG | 0.320534 | 1.1:+74723952 | None:intergenic |
| GACACTTGTTAACGATTCAT+TGG | 0.337668 | 1.1:-74726172 | MS.gene80056:CDS |
| ACTAGTTGGCGTATTATTCC+TGG | 0.368986 | 1.1:+74724886 | None:intergenic |
| TCGGGGAAATGGTGAACATT+TGG | 0.391554 | 1.1:-74725968 | MS.gene80056:CDS |
| CAATTTGGTATTCGGGGAAA+TGG | 0.396980 | 1.1:-74725979 | MS.gene80056:CDS |
| TCATCACTCATTGAGAACTA+TGG | 0.403558 | 1.1:+74723390 | None:intergenic |
| TGTCACCAAATTTGCCAGCT+TGG | 0.405069 | 1.1:-74726209 | MS.gene80056:CDS |
| TAGGATTCGGTTTCCGATGA+TGG | 0.405731 | 1.1:-74724982 | MS.gene80056:CDS |
| TTTAAGATATCTCTTCAGTA+AGG | 0.413390 | 1.1:-74726989 | MS.gene80056:CDS |
| GGATATATCATGGACCAAAA+AGG | 0.416592 | 1.1:-74723945 | MS.gene80056:CDS |
| GAACTGTTGCTGTCTTATAA+TGG | 0.422416 | 1.1:-74725676 | MS.gene80056:CDS |
| TGCACTTGTGCAGGGTATGC+AGG | 0.429202 | 1.1:-74724585 | MS.gene80056:intron |
| CAGCTGCAAAATATTCAGAT+TGG | 0.435154 | 1.1:-74725918 | MS.gene80056:CDS |
| GTCTTTCTTGAAGCTCATCC+AGG | 0.445380 | 1.1:-74726928 | MS.gene80056:intron |
| AGCTGCAAAATATTCAGATT+GGG | 0.452477 | 1.1:-74725917 | MS.gene80056:CDS |
| ATGTATACGCCAACTGAAGC+GGG | 0.466676 | 1.1:+74723421 | None:intergenic |
| TCTTGTTACTGGTAATTTGG+AGG | 0.471836 | 1.1:-74726088 | MS.gene80056:CDS |
| GGAAGAACACCATCACTGAT+AGG | 0.475333 | 1.1:+74724907 | None:intergenic |
| ATTTGGCTGTTGGCGGCTAT+GGG | 0.475928 | 1.1:-74725951 | MS.gene80056:CDS |
| CAAAATATTCAGATTGGGTA+AGG | 0.477505 | 1.1:-74725912 | MS.gene80056:intron |
| GAGTAAATGCAGGATGGACC+AGG | 0.497705 | 1.1:-74723855 | MS.gene80056:intron |
| AGGATTCGGTTTCCGATGAT+GGG | 0.501749 | 1.1:-74724981 | MS.gene80056:CDS |
| GATGATCACAACTTTAATCC+AGG | 0.513020 | 1.1:-74723832 | MS.gene80056:intron |
| ATGGTCAAAACATGAAATCT+GGG | 0.513865 | 1.1:-74724527 | MS.gene80056:CDS |
| TGTTAACGATTCATTGGAGA+AGG | 0.518710 | 1.1:-74726166 | MS.gene80056:CDS |
| AAACCTGGAAGGATATATCA+TGG | 0.523522 | 1.1:-74723955 | MS.gene80056:CDS |
| AATGGTGAACATTTGGCTGT+TGG | 0.529164 | 1.1:-74725961 | MS.gene80056:CDS |
| TGGGCTGATTGCCATTCTGT+TGG | 0.539164 | 1.1:+74723983 | None:intergenic |
| GTCGAGAAGTTGCTCCATCA+TGG | 0.539467 | 1.1:-74724546 | MS.gene80056:CDS |
| GGTGAACATTTGGCTGTTGG+CGG | 0.542329 | 1.1:-74725958 | MS.gene80056:CDS |
| TGGCTGTTGGCGGCTATGGG+AGG | 0.546410 | 1.1:-74725948 | MS.gene80056:CDS |
| TGCAATGCAAGTTTCCAAGC+TGG | 0.556576 | 1.1:+74726195 | None:intergenic |
| AGCAACAGTTCTGTCACTGA+TGG | 0.558246 | 1.1:+74725688 | None:intergenic |
| TTAAGATATCTCTTCAGTAA+GGG | 0.558486 | 1.1:-74726988 | MS.gene80056:CDS |
| TTTCCCCGAATACCAAATTG+AGG | 0.562586 | 1.1:+74725982 | None:intergenic |
| AGATATCTTAAACTTGACAT+TGG | 0.564311 | 1.1:+74727000 | None:intergenic |
| AACCATACTCAAGTACTAGT+TGG | 0.567061 | 1.1:+74724872 | None:intergenic |
| ATGTCATTGCAGATAGCTTG+AGG | 0.568100 | 1.1:-74724036 | MS.gene80056:intron |
| AGACGGGGCTTTCCCATCAT+CGG | 0.568285 | 1.1:+74724969 | None:intergenic |
| ATTAAAGTTGTGATCATCCC+TGG | 0.570286 | 1.1:+74723837 | None:intergenic |
| TGCAGGGTATGCAGGAGTGA+AGG | 0.571410 | 1.1:-74724577 | MS.gene80056:intron |
| AATCAGCCCATTCTAAAACC+TGG | 0.574405 | 1.1:-74723970 | MS.gene80056:CDS |
| GTATTCAGGTTCCAACAGAA+TGG | 0.575665 | 1.1:-74723994 | MS.gene80056:CDS |
| AATGTATACGCCAACTGAAG+CGG | 0.583333 | 1.1:+74723420 | None:intergenic |
| AACAGTTCTGTCACTGATGG+AGG | 0.583762 | 1.1:+74725691 | None:intergenic |
| CCTCCTCAATTTGGTATTCG+GGG | 0.594882 | 1.1:-74725985 | MS.gene80056:CDS |
| AGCCCATTCTAAAACCTGGA+AGG | 0.604355 | 1.1:-74723966 | MS.gene80056:CDS |
| GAACATCTGAGGTGTGTGAA+AGG | 0.607334 | 1.1:+74726962 | None:intergenic |
| CAGACAGCTCCTATCAGTGA+TGG | 0.620267 | 1.1:-74724916 | MS.gene80056:CDS |
| ATGGAGCAACTTCTCGACAT+GGG | 0.621778 | 1.1:+74724551 | None:intergenic |
| GATGGAGCAACTTCTCGACA+TGG | 0.624453 | 1.1:+74724550 | None:intergenic |
| TCAGATTTAAATATGAGCTG+AGG | 0.626076 | 1.1:+74726255 | None:intergenic |
| ATGCAGGATTAGGAAGACAA+TGG | 0.629546 | 1.1:-74725725 | MS.gene80056:intron |
| AATGGTGATCAAATACTCGA+AGG | 0.638330 | 1.1:-74725658 | MS.gene80056:CDS |
| TGTATACGCCAACTGAAGCG+GGG | 0.639314 | 1.1:+74723422 | None:intergenic |
| GCTGGCAAATTTGGTGACAA+TGG | 0.641423 | 1.1:+74726213 | None:intergenic |
| CCCCGAATACCAAATTGAGG+AGG | 0.643632 | 1.1:+74725985 | None:intergenic |
| GTATACGCCAACTGAAGCGG+GGG | 0.660242 | 1.1:+74723423 | None:intergenic |
| AGTAAATGCAGGATGGACCA+GGG | 0.672480 | 1.1:-74723854 | MS.gene80056:intron |
| ACACACCTCAGATGTTCCTG+CGG | 0.686527 | 1.1:-74726956 | MS.gene80056:CDS |
| TTTATTTCCATAATCAGACG+GGG | 0.699217 | 1.1:+74724954 | None:intergenic |
| GTCAAAACATGAAATCTGGG+AGG | 0.703539 | 1.1:-74724524 | MS.gene80056:CDS |
| TGCATGTGAGACTATATCTG+AGG | 0.711093 | 1.1:-74726058 | MS.gene80056:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTTTATACTTATTTATA+TGG | - | chr1.1:74725340-74725359 | MS.gene80056:intron | 10.0% |
| !!! | TTTATTTTATCTTTTGTTAT+TGG | - | chr1.1:74723710-74723729 | MS.gene80056:intron | 10.0% |
| !! | TAACTTATATTAGAACAATT+TGG | - | chr1.1:74723686-74723705 | MS.gene80056:intron | 15.0% |
| !! | TTAATCATTATAAATAGGTA+TGG | + | chr1.1:74725032-74725051 | None:intergenic | 15.0% |
| !! | TTGTAAATAACATAAAATTC+TGG | + | chr1.1:74725625-74725644 | None:intergenic | 15.0% |
| !!! | GAATTTTATGTTATTTACAA+TGG | - | chr1.1:74725625-74725644 | MS.gene80056:CDS | 15.0% |
| !!! | GGTTTTTAATCATTATAAAT+AGG | + | chr1.1:74725037-74725056 | None:intergenic | 15.0% |
| !!! | TAATTTATTTCTGTAACTTT+TGG | + | chr1.1:74725711-74725730 | None:intergenic | 15.0% |
| !! | AAATAACCAAACTTGTAAAT+AGG | + | chr1.1:74726208-74726227 | None:intergenic | 20.0% |
| !! | AAGTAGTAAATAAATTTACC+TGG | + | chr1.1:74726579-74726598 | None:intergenic | 20.0% |
| !! | AGTAAATTCCTACTATTATT+TGG | - | chr1.1:74725096-74725115 | MS.gene80056:intron | 20.0% |
| !! | ATACTATAAAGATGTTTCAT+TGG | + | chr1.1:74725736-74725755 | None:intergenic | 20.0% |
| !! | ATTGTTAGAATATTAAAGCA+TGG | + | chr1.1:74724945-74724964 | None:intergenic | 20.0% |
| !! | GTAAATTCCTACTATTATTT+GGG | - | chr1.1:74725097-74725116 | MS.gene80056:intron | 20.0% |
| !!! | ACAAAATTTGAGATAATTAC+AGG | + | chr1.1:74723834-74723853 | None:intergenic | 20.0% |
| !!! | ATCAACTTTTTTTCTTTTTC+AGG | - | chr1.1:74724006-74724025 | MS.gene80056:CDS | 20.0% |
| !!! | CAAAATTTGAGATAATTACA+GGG | + | chr1.1:74723833-74723852 | None:intergenic | 20.0% |
| !!! | GTTTTATAATTGCAAATGTT+GGG | + | chr1.1:74726807-74726826 | None:intergenic | 20.0% |
| !!! | TTCAAATTGTTTTGGATTAA+TGG | - | chr1.1:74725063-74725082 | MS.gene80056:intron | 20.0% |
| !!! | TTTTTATTTCCATAATCAGA+CGG | + | chr1.1:74725441-74725460 | None:intergenic | 20.0% |
| ! | AATATGACCCAAATAATAGT+AGG | + | chr1.1:74725107-74725126 | None:intergenic | 25.0% |
| ! | CAAGTTAACAAAACCAATAA+AGG | + | chr1.1:74726327-74726346 | None:intergenic | 25.0% |
| ! | CAATAAGTAACATATGTACA+TGG | - | chr1.1:74726888-74726907 | MS.gene80056:intron | 25.0% |
| ! | CCAAAACAATTTGAAGATAA+TGG | + | chr1.1:74725058-74725077 | None:intergenic | 25.0% |
| ! | GAAATAAGTTGTACAGATTA+TGG | + | chr1.1:74723630-74723649 | None:intergenic | 25.0% |
| ! | GTAATTACAGCATATTAATG+TGG | + | chr1.1:74726122-74726141 | None:intergenic | 25.0% |
| ! | TAATAGCATTTCAAGACTAT+TGG | - | chr1.1:74725152-74725171 | MS.gene80056:intron | 25.0% |
| ! | TTAAGATATCTCTTCAGTAA+GGG | - | chr1.1:74723402-74723421 | MS.gene80056:CDS | 25.0% |
| ! | TTAAGGTGGTAAATTTATAC+TGG | - | chr1.1:74726471-74726490 | MS.gene80056:intron | 25.0% |
| !! | ACTACTTTCACATTTTGAAT+TGG | - | chr1.1:74726592-74726611 | MS.gene80056:intron | 25.0% |
| !! | AGAAAATTAGCACTGAAATT+TGG | + | chr1.1:74724590-74724609 | None:intergenic | 25.0% |
| !! | CATGTACATATGTTACTTAT+TGG | + | chr1.1:74726890-74726909 | None:intergenic | 25.0% |
| !! | CCATTATCTTCAAATTGTTT+TGG | - | chr1.1:74725055-74725074 | MS.gene80056:intron | 25.0% |
| !! | CTACTTTCACATTTTGAATT+GGG | - | chr1.1:74726593-74726612 | MS.gene80056:intron | 25.0% |
| !! | CTCAACAAAAGTATAAAATC+CGG | - | chr1.1:74725655-74725674 | MS.gene80056:CDS | 25.0% |
| !! | CTTTTCCTGATTAAAACATA+AGG | + | chr1.1:74726837-74726856 | None:intergenic | 25.0% |
| !! | GATTAAAACATAAGGCATTT+CGG | + | chr1.1:74726829-74726848 | None:intergenic | 25.0% |
| !! | TCAACAAAAGTATAAAATCC+GGG | - | chr1.1:74725656-74725675 | MS.gene80056:CDS | 25.0% |
| !! | TTCTGGTAAATTTTTCTAGA+AGG | + | chr1.1:74725608-74725627 | None:intergenic | 25.0% |
| !! | TTTAAGATATCTCTTCAGTA+AGG | - | chr1.1:74723401-74723420 | MS.gene80056:CDS | 25.0% |
| !! | TTTTAATCAGGAAAAGGTTA+TGG | - | chr1.1:74726841-74726860 | MS.gene80056:intron | 25.0% |
| !!! | AAATGCCTTATGTTTTAATC+AGG | - | chr1.1:74726829-74726848 | MS.gene80056:intron | 25.0% |
| !!! | ACAAAAGTGCATGTTTTTAA+CGG | + | chr1.1:74723888-74723907 | None:intergenic | 25.0% |
| !!! | ATGCACTTTTGTAATTTGTA+CGG | - | chr1.1:74723896-74723915 | MS.gene80056:intron | 25.0% |
| !!! | CTTATGTTTTAATCAGGAAA+AGG | - | chr1.1:74726835-74726854 | MS.gene80056:intron | 25.0% |
| !!! | CTTTATTGGTTTTGTTAACT+TGG | - | chr1.1:74726325-74726344 | MS.gene80056:CDS | 25.0% |
| !!! | GGTTTTATAATTGCAAATGT+TGG | + | chr1.1:74726808-74726827 | None:intergenic | 25.0% |
| !!! | TCTGGTAAATTTTTCTAGAA+GGG | + | chr1.1:74725607-74725626 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTTAGTCTTACTG+AGG | - | chr1.1:74725926-74725945 | MS.gene80056:CDS | 25.0% |
| !!! | TTTTAGGTTCAAATCTTATG+AGG | + | chr1.1:74724896-74724915 | None:intergenic | 25.0% |
| !!! | TTTTATTTCCATAATCAGAC+GGG | + | chr1.1:74725440-74725459 | None:intergenic | 25.0% |
| AACTCAAATTAACCAGAGAA+AGG | + | chr1.1:74723549-74723568 | None:intergenic | 30.0% | |
| AACTCTTGTTACTGGTAATT+TGG | - | chr1.1:74724299-74724318 | MS.gene80056:intron | 30.0% | |
| AACTTTGCAAATTGTTCGTT+TGG | - | chr1.1:74725958-74725977 | MS.gene80056:CDS | 30.0% | |
| ACTCAAATTAACCAGAGAAA+GGG | + | chr1.1:74723548-74723567 | None:intergenic | 30.0% | |
| AGCTGCAAAATATTCAGATT+GGG | - | chr1.1:74724473-74724492 | MS.gene80056:intron | 30.0% | |
| AGTTGCATCTAGTAATTTGA+AGG | + | chr1.1:74724635-74724654 | None:intergenic | 30.0% | |
| ATCATTACAACTCTTGTTAC+TGG | - | chr1.1:74724291-74724310 | MS.gene80056:intron | 30.0% | |
| ATGGACCAAAAAGGAATTTA+AGG | - | chr1.1:74726454-74726473 | MS.gene80056:intron | 30.0% | |
| ATGGTCAAAACATGAAATCT+GGG | - | chr1.1:74725863-74725882 | MS.gene80056:intron | 30.0% | |
| CAAAATATTCAGATTGGGTA+AGG | - | chr1.1:74724478-74724497 | MS.gene80056:intron | 30.0% | |
| GATTTCAGACTATCCTTTAT+TGG | - | chr1.1:74726311-74726330 | MS.gene80056:CDS | 30.0% | |
| TACTGACCTATTTACAAGTT+TGG | - | chr1.1:74726199-74726218 | MS.gene80056:CDS | 30.0% | |
| TCAGATTTAAATATGAGCTG+AGG | + | chr1.1:74724138-74724157 | None:intergenic | 30.0% | |
| TCTGCTTGAATAAACAAACT+TGG | + | chr1.1:74723791-74723810 | None:intergenic | 30.0% | |
| TTATATGGATGAGCATAGAA+GGG | + | chr1.1:74724548-74724567 | None:intergenic | 30.0% | |
| TTCTCAATTTGAGTAAATGC+AGG | - | chr1.1:74726525-74726544 | MS.gene80056:intron | 30.0% | |
| TTTAAATGTGTCGAAATCCT+CGG | + | chr1.1:74726053-74726072 | None:intergenic | 30.0% | |
| TTTATTTCCATAATCAGACG+GGG | + | chr1.1:74725439-74725458 | None:intergenic | 30.0% | |
| TTTGGTTAGTAACCATATGT+GGG | - | chr1.1:74724865-74724884 | MS.gene80056:intron | 30.0% | |
| ! | AATTTGTACGGACTAAAAAG+AGG | - | chr1.1:74723908-74723927 | MS.gene80056:intron | 30.0% |
| ! | ATCGTTTCCTGTTTCATTTT+AGG | - | chr1.1:74725389-74725408 | MS.gene80056:intron | 30.0% |
| ! | TACCACCTTAAATTCCTTTT+TGG | + | chr1.1:74726462-74726481 | None:intergenic | 30.0% |
| !! | GGGTTTACAAAGTATTTTGT+TGG | + | chr1.1:74723528-74723547 | None:intergenic | 30.0% |
| !! | TAGAAAATAAAAGCGCTAAC+AGG | - | chr1.1:74725755-74725774 | MS.gene80056:intron | 30.0% |
| !! | TTGAAAGTATCTAAAGAACC+TGG | + | chr1.1:74723483-74723502 | None:intergenic | 30.0% |
| !!! | ATTTCATGTTTTGACCATGA+TGG | + | chr1.1:74725861-74725880 | None:intergenic | 30.0% |
| !!! | TCCTGTTTCATTTTAGGATT+CGG | - | chr1.1:74725395-74725414 | MS.gene80056:intron | 30.0% |
| AAACCTGGAAGGATATATCA+TGG | - | chr1.1:74726435-74726454 | MS.gene80056:intron | 35.0% | |
| AACCATACTCAAGTACTAGT+TGG | + | chr1.1:74725521-74725540 | None:intergenic | 35.0% | |
| AAGTTAGCTGGAATAGTTGT+AGG | + | chr1.1:74724994-74725013 | None:intergenic | 35.0% | |
| AATGGTGATCAAATACTCGA+AGG | - | chr1.1:74724732-74724751 | MS.gene80056:intron | 35.0% | |
| ACCGAATCCTAAAATGAAAC+AGG | + | chr1.1:74725399-74725418 | None:intergenic | 35.0% | |
| ACTAGTACTTGAGTATGGTT+TGG | - | chr1.1:74725521-74725540 | MS.gene80056:intron | 35.0% | |
| ACTTATGTTCCTCCTCAATT+TGG | - | chr1.1:74724396-74724415 | MS.gene80056:intron | 35.0% | |
| AGAAACTGAAAAGTGGTTAC+AGG | + | chr1.1:74723865-74723884 | None:intergenic | 35.0% | |
| AGGTTCAGAGACTAAACAAA+AGG | - | chr1.1:74723928-74723947 | MS.gene80056:intron | 35.0% | |
| ATTAAAGTTGTGATCATCCC+TGG | + | chr1.1:74726556-74726575 | None:intergenic | 35.0% | |
| CAATGACATTGTATGTCAGT+TGG | - | chr1.1:74726230-74726249 | MS.gene80056:CDS | 35.0% | |
| CAATTTGAGTAAATGCAGGA+TGG | - | chr1.1:74726529-74726548 | MS.gene80056:intron | 35.0% | |
| CACATATGGTTACTAACCAA+AGG | + | chr1.1:74724866-74724885 | None:intergenic | 35.0% | |
| CAGCTGCAAAATATTCAGAT+TGG | - | chr1.1:74724472-74724491 | MS.gene80056:intron | 35.0% | |
| CATGGTCAAAACATGAAATC+TGG | - | chr1.1:74725862-74725881 | MS.gene80056:intron | 35.0% | |
| CTAAAAGCTGTTGCTAATCA+TGG | - | chr1.1:74724910-74724929 | MS.gene80056:CDS | 35.0% | |
| CTAAAATTCTCTGTGTCCTT+TGG | - | chr1.1:74724847-74724866 | MS.gene80056:intron | 35.0% | |
| CTGAAATTTGGTATCGTCAA+AGG | + | chr1.1:74724578-74724597 | None:intergenic | 35.0% | |
| CTTATATGGATGAGCATAGA+AGG | + | chr1.1:74724549-74724568 | None:intergenic | 35.0% | |
| CTTTGGTTAGTAACCATATG+TGG | - | chr1.1:74724864-74724883 | MS.gene80056:intron | 35.0% | |
| GAAACTGAAAAGTGGTTACA+GGG | + | chr1.1:74723864-74723883 | None:intergenic | 35.0% | |
| GAACTGTTGCTGTCTTATAA+TGG | - | chr1.1:74724714-74724733 | MS.gene80056:intron | 35.0% | |
| GACCAAAAAGGAATTTAAGG+TGG | - | chr1.1:74726457-74726476 | MS.gene80056:intron | 35.0% | |
| GATAAAATAAGCTCACCTTG+CGG | + | chr1.1:74724785-74724804 | None:intergenic | 35.0% | |
| GATGATCACAACTTTAATCC+AGG | - | chr1.1:74726558-74726577 | MS.gene80056:intron | 35.0% | |
| GGATATATCATGGACCAAAA+AGG | - | chr1.1:74726445-74726464 | MS.gene80056:intron | 35.0% | |
| GTAAATGGACAGATGCATAA+TGG | + | chr1.1:74726658-74726677 | None:intergenic | 35.0% | |
| GTCAAAGGCAGTAACTTATA+TGG | + | chr1.1:74724563-74724582 | None:intergenic | 35.0% | |
| TACAAAATAGTATTCTCGCG+AGG | + | chr1.1:74726149-74726168 | None:intergenic | 35.0% | |
| TACAACTATTCCAGCTAACT+TGG | - | chr1.1:74724993-74725012 | MS.gene80056:intron | 35.0% | |
| TACTGCTAGATCGAAATCAA+TGG | - | chr1.1:74726027-74726046 | MS.gene80056:CDS | 35.0% | |
| TACTTTGTAAACCCTTTCTC+TGG | - | chr1.1:74723534-74723553 | MS.gene80056:intron | 35.0% | |
| TATGAGGTAATTCCCACATA+TGG | + | chr1.1:74724880-74724899 | None:intergenic | 35.0% | |
| TATGCATCTGTCCATTTACA+CGG | - | chr1.1:74726659-74726678 | MS.gene80056:intron | 35.0% | |
| TCTTGTTACTGGTAATTTGG+AGG | - | chr1.1:74724302-74724321 | MS.gene80056:intron | 35.0% | |
| TGAAATAAGCTTATGCGTCA+TGG | - | chr1.1:74725314-74725333 | MS.gene80056:intron | 35.0% | |
| TGTTAACGATTCATTGGAGA+AGG | - | chr1.1:74724224-74724243 | MS.gene80056:intron | 35.0% | |
| TTAACGGAGAAACTGAAAAG+TGG | + | chr1.1:74723872-74723891 | None:intergenic | 35.0% | |
| TTATCTCATTTGATGGAGAG+TGG | - | chr1.1:74725681-74725700 | MS.gene80056:CDS | 35.0% | |
| TTCCTCCTCAATTTGGTATT+CGG | - | chr1.1:74724403-74724422 | MS.gene80056:intron | 35.0% | |
| ! | ATGGAGAAAGCAACTTTTGA+AGG | - | chr1.1:74726860-74726879 | MS.gene80056:intron | 35.0% |
| ! | CACATTTTGAATTGGGACTT+GGG | - | chr1.1:74726600-74726619 | MS.gene80056:intron | 35.0% |
| ! | CATGATTAGCAACAGCTTTT+AGG | + | chr1.1:74724912-74724931 | None:intergenic | 35.0% |
| ! | GACACTTGTTAACGATTCAT+TGG | - | chr1.1:74724218-74724237 | MS.gene80056:intron | 35.0% |
| ! | GATAGTCTGAAATCTAGTGT+AGG | + | chr1.1:74726305-74726324 | None:intergenic | 35.0% |
| ! | TCACATTTTGAATTGGGACT+TGG | - | chr1.1:74726599-74726618 | MS.gene80056:intron | 35.0% |
| ! | TGCTTCATGCTTGATGTTTT+GGG | - | chr1.1:74724059-74724078 | MS.gene80056:intron | 35.0% |
| ! | TTTTTCTGCAATGCAGGATT+AGG | - | chr1.1:74724655-74724674 | MS.gene80056:intron | 35.0% |
| !! | AAGTTATGAGTCGTTTTCGT+AGG | + | chr1.1:74723672-74723691 | None:intergenic | 35.0% |
| !! | AGGTTATTTCTCATGTGACT+TGG | - | chr1.1:74725775-74725794 | MS.gene80056:intron | 35.0% |
| !!! | ATCCTTCCAGGTTTTAGAAT+GGG | + | chr1.1:74726429-74726448 | None:intergenic | 35.0% |
| !!! | TATCCTTCCAGGTTTTAGAA+TGG | + | chr1.1:74726430-74726449 | None:intergenic | 35.0% |
| !!! | TTTTTTCGTTGTTATCCGCA+AGG | - | chr1.1:74724767-74724786 | MS.gene80056:intron | 35.0% |
| AAACCTTTGCTGGGATGAAA+TGG | - | chr1.1:74726921-74726940 | MS.gene80056:intron | 40.0% | |
| AACTATTCCAGCTAACTTGG+TGG | - | chr1.1:74724996-74725015 | MS.gene80056:intron | 40.0% | |
| AAGACCACAAACCGTGTAAA+TGG | + | chr1.1:74726673-74726692 | None:intergenic | 40.0% | |
| AAGCTGTTGCTAATCATGGT+TGG | - | chr1.1:74724914-74724933 | MS.gene80056:CDS | 40.0% | |
| AATGGTGAACATTTGGCTGT+TGG | - | chr1.1:74724429-74724448 | MS.gene80056:intron | 40.0% | |
| AATGTATACGCCAACTGAAG+CGG | + | chr1.1:74726973-74726992 | None:intergenic | 40.0% | |
| ACTAGTTGGCGTATTATTCC+TGG | + | chr1.1:74725507-74725526 | None:intergenic | 40.0% | |
| AGCTGTTGCTAATCATGGTT+GGG | - | chr1.1:74724915-74724934 | MS.gene80056:CDS | 40.0% | |
| AGGCTATCTTAGAGAGCTTA+CGG | + | chr1.1:74723652-74723671 | None:intergenic | 40.0% | |
| AGTTTCCAAGCTGGCAAATT+TGG | + | chr1.1:74724189-74724208 | None:intergenic | 40.0% | |
| ATGCAGGATTAGGAAGACAA+TGG | - | chr1.1:74724665-74724684 | MS.gene80056:intron | 40.0% | |
| ATGGACATGTGACATGTCAT+AGG | + | chr1.1:74723611-74723630 | None:intergenic | 40.0% | |
| ATGTCATTGCAGATAGCTTG+AGG | - | chr1.1:74726354-74726373 | MS.gene80056:CDS | 40.0% | |
| ATTCACTCACTACTATGTGG+TGG | - | chr1.1:74726078-74726097 | MS.gene80056:CDS | 40.0% | |
| CAATTTGGTATTCGGGGAAA+TGG | - | chr1.1:74724411-74724430 | MS.gene80056:intron | 40.0% | |
| CCATCAAATGAGATAAAGCC+CGG | + | chr1.1:74725677-74725696 | None:intergenic | 40.0% | |
| GAAGATCCTAAACCTTTGCT+GGG | - | chr1.1:74726912-74726931 | MS.gene80056:intron | 40.0% | |
| GCAACATGCAGATAGTATTC+AGG | - | chr1.1:74726382-74726401 | MS.gene80056:intron | 40.0% | |
| GTCAAAACATGAAATCTGGG+AGG | - | chr1.1:74725866-74725885 | MS.gene80056:intron | 40.0% | |
| TACATTCTCAAGAGTTCACG+AGG | - | chr1.1:74725233-74725252 | MS.gene80056:intron | 40.0% | |
| TCCTCCTCAATTTGGTATTC+GGG | - | chr1.1:74724404-74724423 | MS.gene80056:intron | 40.0% | |
| TGAAGATCCTAAACCTTTGC+TGG | - | chr1.1:74726911-74726930 | MS.gene80056:intron | 40.0% | |
| TGCATGTGAGACTATATCTG+AGG | - | chr1.1:74724332-74724351 | MS.gene80056:intron | 40.0% | |
| TGCATTCACTCACTACTATG+TGG | - | chr1.1:74726075-74726094 | MS.gene80056:CDS | 40.0% | |
| TTAACTTCCACCAAGTTAGC+TGG | + | chr1.1:74725006-74725025 | None:intergenic | 40.0% | |
| TTTCATCCCAGCAAAGGTTT+AGG | + | chr1.1:74726921-74726940 | None:intergenic | 40.0% | |
| TTTCCCCGAATACCAAATTG+AGG | + | chr1.1:74724411-74724430 | None:intergenic | 40.0% | |
| ! | CAAAAGGTGTAAACTCTACG+AGG | - | chr1.1:74723944-74723963 | MS.gene80056:CDS | 40.0% |
| ! | GAAAAAGAGGGTTGATTCTG+AGG | - | chr1.1:74724263-74724282 | MS.gene80056:intron | 40.0% |
| ! | GTATTCAGGTTCCAACAGAA+TGG | - | chr1.1:74726396-74726415 | MS.gene80056:intron | 40.0% |
| ! | GTGCTTCATGCTTGATGTTT+TGG | - | chr1.1:74724058-74724077 | MS.gene80056:intron | 40.0% |
| ! | TTTTGAATTGGGACTTGGGA+TGG | - | chr1.1:74726604-74726623 | MS.gene80056:intron | 40.0% |
| !! | AATCAGCCCATTCTAAAACC+TGG | - | chr1.1:74726420-74726439 | MS.gene80056:intron | 40.0% |
| !!! | AACCCTCTTTTTCAGTGCAA+AGG | + | chr1.1:74724256-74724275 | None:intergenic | 40.0% |
| !!! | ACCCTCTTTTTCAGTGCAAA+GGG | + | chr1.1:74724255-74724274 | None:intergenic | 40.0% |
| !!! | CATGCTTGATGTTTTGGGAA+AGG | - | chr1.1:74724064-74724083 | MS.gene80056:intron | 40.0% |
| !!! | GCAACTTTTTTCTGCAATGC+AGG | - | chr1.1:74724649-74724668 | MS.gene80056:intron | 40.0% |
| AACAGTTCTGTCACTGATGG+AGG | + | chr1.1:74724702-74724721 | None:intergenic | 45.0% | |
| AGCAACAGTTCTGTCACTGA+TGG | + | chr1.1:74724705-74724724 | None:intergenic | 45.0% | |
| AGTAAATGCAGGATGGACCA+GGG | - | chr1.1:74726536-74726555 | MS.gene80056:intron | 45.0% | |
| ATGGAGCAACTTCTCGACAT+GGG | + | chr1.1:74725842-74725861 | None:intergenic | 45.0% | |
| ATGTATACGCCAACTGAAGC+GGG | + | chr1.1:74726972-74726991 | None:intergenic | 45.0% | |
| CCTCCTCAATTTGGTATTCG+GGG | - | chr1.1:74724405-74724424 | MS.gene80056:intron | 45.0% | |
| CGCCAACTAGTACTTGAGTA+TGG | - | chr1.1:74725516-74725535 | MS.gene80056:intron | 45.0% | |
| CTGTCCATTTACACGGTTTG+TGG | - | chr1.1:74726666-74726685 | MS.gene80056:intron | 45.0% | |
| GCCCTTTGCACTGAAAAAGA+GGG | - | chr1.1:74724251-74724270 | MS.gene80056:intron | 45.0% | |
| GGAAGAACACCATCACTGAT+AGG | + | chr1.1:74725486-74725505 | None:intergenic | 45.0% | |
| GGTCCATGATATATCCTTCC+AGG | + | chr1.1:74726441-74726460 | None:intergenic | 45.0% | |
| GTCTTTCTTGAAGCTCATCC+AGG | - | chr1.1:74723462-74723481 | MS.gene80056:intron | 45.0% | |
| TAGATCGAAATCAATGGCCG+AGG | - | chr1.1:74726033-74726052 | MS.gene80056:CDS | 45.0% | |
| TCGGGGAAATGGTGAACATT+TGG | - | chr1.1:74724422-74724441 | MS.gene80056:intron | 45.0% | |
| TGCAATGCAAGTTTCCAAGC+TGG | + | chr1.1:74724198-74724217 | None:intergenic | 45.0% | |
| TGCCCTTTGCACTGAAAAAG+AGG | - | chr1.1:74724250-74724269 | MS.gene80056:intron | 45.0% | |
| TGTCACCAAATTTGCCAGCT+TGG | - | chr1.1:74724181-74724200 | MS.gene80056:intron | 45.0% | |
| TGTCCATTTCATCCCAGCAA+AGG | + | chr1.1:74726927-74726946 | None:intergenic | 45.0% | |
| ! | AGGATTCGGTTTCCGATGAT+GGG | - | chr1.1:74725409-74725428 | MS.gene80056:intron | 45.0% |
| ! | ATCAGTGATGGTGTTCTTCC+AGG | - | chr1.1:74725486-74725505 | MS.gene80056:intron | 45.0% |
| ! | CAAGAGTTCACGAGGTATCT+TGG | - | chr1.1:74725241-74725260 | MS.gene80056:intron | 45.0% |
| ! | CCGGGCTTTATCTCATTTGA+TGG | - | chr1.1:74725674-74725693 | MS.gene80056:CDS | 45.0% |
| ! | GAACATCTGAGGTGTGTGAA+AGG | + | chr1.1:74723431-74723450 | None:intergenic | 45.0% |
| ! | GCATGATTTGCACTTGTGCA+GGG | - | chr1.1:74725797-74725816 | MS.gene80056:intron | 45.0% |
| ! | GCTGGCAAATTTGGTGACAA+TGG | + | chr1.1:74724180-74724199 | None:intergenic | 45.0% |
| ! | TAGGATTCGGTTTCCGATGA+TGG | - | chr1.1:74725408-74725427 | MS.gene80056:intron | 45.0% |
| ! | TCAAGAAAGACTTTTGCCGC+AGG | + | chr1.1:74723453-74723472 | None:intergenic | 45.0% |
| !! | AGCCCATTCTAAAACCTGGA+AGG | - | chr1.1:74726424-74726443 | MS.gene80056:intron | 45.0% |
| ACACACCTCAGATGTTCCTG+CGG | - | chr1.1:74723434-74723453 | MS.gene80056:CDS | 50.0% | |
| AGAAGGGACTCGTTCTTCTG+TGG | + | chr1.1:74725591-74725610 | None:intergenic | 50.0% | |
| ATTTGGCTGTTGGCGGCTAT+GGG | - | chr1.1:74724439-74724458 | MS.gene80056:intron | 50.0% | |
| CAGACAGCTCCTATCAGTGA+TGG | - | chr1.1:74725474-74725493 | MS.gene80056:intron | 50.0% | |
| CCCCGAATACCAAATTGAGG+AGG | + | chr1.1:74724408-74724427 | None:intergenic | 50.0% | |
| GAGTAAATGCAGGATGGACC+AGG | - | chr1.1:74726535-74726554 | MS.gene80056:intron | 50.0% | |
| GATGGAGCAACTTCTCGACA+TGG | + | chr1.1:74725843-74725862 | None:intergenic | 50.0% | |
| GGTGAACATTTGGCTGTTGG+CGG | - | chr1.1:74724432-74724451 | MS.gene80056:intron | 50.0% | |
| GTCGAGAAGTTGCTCCATCA+TGG | - | chr1.1:74725844-74725863 | MS.gene80056:intron | 50.0% | |
| TGGGCTGATTGCCATTCTGT+TGG | + | chr1.1:74726410-74726429 | None:intergenic | 50.0% | |
| TGTATACGCCAACTGAAGCG+GGG | + | chr1.1:74726971-74726990 | None:intergenic | 50.0% | |
| ! | GGCATGATTTGCACTTGTGC+AGG | - | chr1.1:74725796-74725815 | MS.gene80056:intron | 50.0% |
| ! | TTTTGCCGCAGGAACATCTG+AGG | + | chr1.1:74723442-74723461 | None:intergenic | 50.0% |
| AGACGGGGCTTTCCCATCAT+CGG | + | chr1.1:74725424-74725443 | None:intergenic | 55.0% | |
| CATTTGGCTGTTGGCGGCTA+TGG | - | chr1.1:74724438-74724457 | MS.gene80056:intron | 55.0% | |
| GGGAAAGCCCCGTCTGATTA+TGG | - | chr1.1:74725429-74725448 | MS.gene80056:intron | 55.0% | |
| GTATACGCCAACTGAAGCGG+GGG | + | chr1.1:74726970-74726989 | None:intergenic | 55.0% | |
| TCTTTCTCCCCCGCTTCAGT+TGG | - | chr1.1:74726960-74726979 | MS.gene80056:CDS | 55.0% | |
| TGAAGCGGGGGAGAAAGAGA+AGG | + | chr1.1:74726958-74726977 | None:intergenic | 55.0% | |
| TGCACTTGTGCAGGGTATGC+AGG | - | chr1.1:74725805-74725824 | MS.gene80056:intron | 55.0% | |
| TGCAGGGTATGCAGGAGTGA+AGG | - | chr1.1:74725813-74725832 | MS.gene80056:intron | 55.0% | |
| TGGCTGTTGGCGGCTATGGG+AGG | - | chr1.1:74724442-74724461 | MS.gene80056:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 74723393 | 74727019 | 74723393 | ID=MS.gene80056 |
| chr1.1 | mRNA | 74723393 | 74727019 | 74723393 | ID=MS.gene80056.t1;Parent=MS.gene80056 |
| chr1.1 | exon | 74726929 | 74727019 | 74726929 | ID=MS.gene80056.t1.exon1;Parent=MS.gene80056.t1 |
| chr1.1 | CDS | 74726929 | 74727019 | 74726929 | ID=cds.MS.gene80056.t1;Parent=MS.gene80056.t1 |
| chr1.1 | exon | 74725913 | 74726384 | 74725913 | ID=MS.gene80056.t1.exon2;Parent=MS.gene80056.t1 |
| chr1.1 | CDS | 74725913 | 74726384 | 74725913 | ID=cds.MS.gene80056.t1;Parent=MS.gene80056.t1 |
| chr1.1 | exon | 74725624 | 74725741 | 74725624 | ID=MS.gene80056.t1.exon3;Parent=MS.gene80056.t1 |
| chr1.1 | CDS | 74725624 | 74725741 | 74725624 | ID=cds.MS.gene80056.t1;Parent=MS.gene80056.t1 |
| chr1.1 | exon | 74724880 | 74725001 | 74724880 | ID=MS.gene80056.t1.exon4;Parent=MS.gene80056.t1 |
| chr1.1 | CDS | 74724880 | 74725001 | 74724880 | ID=cds.MS.gene80056.t1;Parent=MS.gene80056.t1 |
| chr1.1 | exon | 74724509 | 74724594 | 74724509 | ID=MS.gene80056.t1.exon5;Parent=MS.gene80056.t1 |
| chr1.1 | CDS | 74724509 | 74724594 | 74724509 | ID=cds.MS.gene80056.t1;Parent=MS.gene80056.t1 |
| chr1.1 | exon | 74723937 | 74724046 | 74723937 | ID=MS.gene80056.t1.exon6;Parent=MS.gene80056.t1 |
| chr1.1 | CDS | 74723937 | 74724046 | 74723937 | ID=cds.MS.gene80056.t1;Parent=MS.gene80056.t1 |
| chr1.1 | exon | 74723833 | 74723865 | 74723833 | ID=MS.gene80056.t1.exon7;Parent=MS.gene80056.t1 |
| chr1.1 | CDS | 74723833 | 74723865 | 74723833 | ID=cds.MS.gene80056.t1;Parent=MS.gene80056.t1 |
| chr1.1 | exon | 74723393 | 74723464 | 74723393 | ID=MS.gene80056.t1.exon8;Parent=MS.gene80056.t1 |
| chr1.1 | CDS | 74723393 | 74723464 | 74723393 | ID=cds.MS.gene80056.t1;Parent=MS.gene80056.t1 |
| Gene Sequence |
| Protein sequence |
