Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80181.t1 | XP_003603291.1 | 99.8 | 636 | 1 | 0 | 1 | 636 | 1 | 636 | 0.00E+00 | 1255.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80181.t1 | Q9C5N2 | 83.3 | 645 | 98 | 3 | 1 | 636 | 1 | 644 | 2.5e-312 | 1072.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80181.t1 | G7J9U2 | 99.8 | 636 | 1 | 0 | 1 | 636 | 1 | 636 | 0.0e+00 | 1255.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052289 | MS.gene80181 | 0.821078 | 4.89E-53 | -1.69E-46 |
| MS.gene057195 | MS.gene80181 | 0.820759 | 5.79E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041418 | MS.gene80181 | PPI |
| MS.gene36542 | MS.gene80181 | PPI |
| MS.gene014910 | MS.gene80181 | PPI |
| MS.gene058486 | MS.gene80181 | PPI |
| MS.gene011190 | MS.gene80181 | PPI |
| MS.gene80184 | MS.gene80181 | PPI |
| MS.gene42664 | MS.gene80181 | PPI |
| MS.gene57710 | MS.gene80181 | PPI |
| MS.gene33117 | MS.gene80181 | PPI |
| MS.gene36992 | MS.gene80181 | PPI |
| MS.gene80181 | MS.gene42664 | PPI |
| MS.gene36990 | MS.gene80181 | PPI |
| MS.gene051485 | MS.gene80181 | PPI |
| MS.gene80181 | MS.gene020254 | PPI |
| MS.gene32702 | MS.gene80181 | PPI |
| MS.gene80181 | MS.gene036639 | PPI |
| MS.gene58761 | MS.gene80181 | PPI |
| MS.gene016086 | MS.gene80181 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80181.t1 | MTR_3g105950 | 99.843 | 636 | 1 | 0 | 1 | 636 | 1 | 636 | 0.0 | 1307 |
| MS.gene80181.t1 | MTR_1g014080 | 89.655 | 638 | 63 | 3 | 1 | 636 | 1 | 637 | 0.0 | 1160 |
| MS.gene80181.t1 | MTR_8g016270 | 75.475 | 632 | 153 | 2 | 6 | 636 | 18 | 648 | 0.0 | 999 |
| MS.gene80181.t1 | MTR_5g098730 | 45.023 | 653 | 301 | 14 | 22 | 636 | 33 | 665 | 0.0 | 531 |
| MS.gene80181.t1 | MTR_3g082140 | 44.720 | 644 | 316 | 15 | 22 | 636 | 27 | 659 | 2.89e-179 | 524 |
| MS.gene80181.t1 | MTR_0204s0010 | 48.690 | 458 | 212 | 7 | 191 | 636 | 2 | 448 | 1.30e-150 | 443 |
| MS.gene80181.t1 | MTR_6g074910 | 32.237 | 608 | 357 | 8 | 35 | 636 | 30 | 588 | 6.43e-111 | 345 |
| MS.gene80181.t1 | MTR_5g077170 | 32.072 | 608 | 360 | 8 | 35 | 636 | 31 | 591 | 4.63e-110 | 343 |
| MS.gene80181.t1 | MTR_8g088730 | 33.225 | 614 | 343 | 10 | 35 | 636 | 31 | 589 | 8.33e-100 | 317 |
| MS.gene80181.t1 | MTR_2g006300 | 33.607 | 610 | 340 | 9 | 37 | 636 | 29 | 583 | 2.01e-96 | 308 |
| MS.gene80181.t1 | MTR_4g053270 | 30.744 | 605 | 362 | 10 | 36 | 634 | 34 | 587 | 3.01e-86 | 281 |
| MS.gene80181.t1 | MTR_7g060560 | 87.288 | 118 | 15 | 0 | 91 | 208 | 274 | 391 | 1.29e-63 | 215 |
| MS.gene80181.t1 | MTR_3g090510 | 81.967 | 122 | 20 | 1 | 87 | 208 | 275 | 394 | 1.68e-60 | 207 |
| MS.gene80181.t1 | MTR_5g014340 | 79.439 | 107 | 17 | 1 | 93 | 199 | 1 | 102 | 4.50e-43 | 155 |
| MS.gene80181.t1 | MTR_4g116770 | 40.704 | 199 | 101 | 6 | 1 | 193 | 1 | 188 | 4.63e-33 | 135 |
| MS.gene80181.t1 | MTR_0249s0060 | 85.294 | 68 | 10 | 0 | 93 | 160 | 1 | 68 | 4.82e-28 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80181.t1 | AT5G25100 | 83.256 | 645 | 98 | 3 | 1 | 636 | 1 | 644 | 0.0 | 1092 |
| MS.gene80181.t1 | AT5G10840 | 82.535 | 647 | 101 | 3 | 1 | 636 | 3 | 648 | 0.0 | 1091 |
| MS.gene80181.t1 | AT5G25100 | 82.362 | 652 | 98 | 4 | 1 | 636 | 1 | 651 | 0.0 | 1087 |
| MS.gene80181.t1 | AT2G24170 | 80.408 | 638 | 122 | 3 | 1 | 636 | 1 | 637 | 0.0 | 1048 |
| MS.gene80181.t1 | AT3G13772 | 76.136 | 616 | 145 | 2 | 22 | 636 | 27 | 641 | 0.0 | 991 |
| MS.gene80181.t1 | AT1G55130 | 73.899 | 636 | 162 | 3 | 4 | 636 | 3 | 637 | 0.0 | 979 |
| MS.gene80181.t1 | AT2G24170 | 76.629 | 445 | 101 | 3 | 1 | 443 | 1 | 444 | 0.0 | 710 |
| MS.gene80181.t1 | AT5G35160 | 44.678 | 667 | 304 | 13 | 13 | 636 | 14 | 658 | 0.0 | 540 |
| MS.gene80181.t1 | AT5G35160 | 44.678 | 667 | 304 | 13 | 13 | 636 | 14 | 658 | 0.0 | 540 |
| MS.gene80181.t1 | AT5G35160 | 44.678 | 667 | 304 | 13 | 13 | 636 | 14 | 658 | 0.0 | 540 |
| MS.gene80181.t1 | AT4G12650 | 44.359 | 647 | 314 | 12 | 22 | 636 | 20 | 652 | 1.55e-173 | 509 |
| MS.gene80181.t1 | AT5G35160 | 42.643 | 666 | 291 | 13 | 13 | 636 | 14 | 630 | 3.97e-169 | 497 |
| MS.gene80181.t1 | AT2G01970 | 33.224 | 608 | 350 | 8 | 36 | 636 | 34 | 592 | 6.38e-118 | 364 |
| MS.gene80181.t1 | AT5G37310 | 31.905 | 630 | 360 | 10 | 24 | 636 | 16 | 593 | 5.41e-110 | 343 |
| MS.gene80181.t1 | AT5G37310 | 31.905 | 630 | 360 | 10 | 24 | 636 | 16 | 593 | 5.41e-110 | 343 |
| MS.gene80181.t1 | AT1G14670 | 32.120 | 632 | 373 | 8 | 12 | 636 | 10 | 592 | 6.31e-110 | 343 |
| MS.gene80181.t1 | AT1G10950 | 34.272 | 604 | 332 | 11 | 43 | 636 | 41 | 589 | 5.36e-99 | 315 |
| MS.gene80181.t1 | AT1G08350 | 30.866 | 635 | 378 | 12 | 11 | 636 | 7 | 589 | 2.52e-98 | 313 |
| MS.gene80181.t1 | AT1G08350 | 30.866 | 635 | 378 | 12 | 11 | 636 | 7 | 589 | 2.52e-98 | 313 |
| MS.gene80181.t1 | AT1G08350 | 30.948 | 559 | 326 | 11 | 86 | 636 | 2 | 508 | 1.19e-87 | 282 |
| MS.gene80181.t1 | AT1G08350 | 30.017 | 583 | 338 | 12 | 11 | 584 | 7 | 528 | 2.55e-83 | 272 |
Find 145 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTCCACAAGATTTCTTTA+AGG | 0.160692 | 3.4:-92451644 | MS.gene80181:intron |
| TCTCTTCTTGGGCTTCTTCC+TGG | 0.162911 | 3.4:+92449267 | None:intergenic |
| ATGATTGTTCTCTTCCTTTC+GGG | 0.199038 | 3.4:-92449356 | MS.gene80181:CDS |
| AACACGAGTATGATGGTAAA+TGG | 0.258508 | 3.4:-92449914 | MS.gene80181:CDS |
| GACAGCCATGCTCTTGGTTT+GGG | 0.261532 | 3.4:-92449081 | MS.gene80181:CDS |
| CAATAGAGAACCAGTGAATT+TGG | 0.271157 | 3.4:+92449390 | None:intergenic |
| CACATATGATGTTGATTTCC+AGG | 0.271731 | 3.4:-92449787 | MS.gene80181:intron |
| AATGATTGTTCTCTTCCTTT+CGG | 0.275069 | 3.4:-92449357 | MS.gene80181:CDS |
| CTCTTCTTGGGCTTCTTCCT+GGG | 0.277059 | 3.4:+92449268 | None:intergenic |
| TTGTCCATGGGGATGTATTT+AGG | 0.282833 | 3.4:-92449232 | MS.gene80181:CDS |
| TATATTAAATGCTCTCATTT+GGG | 0.284478 | 3.4:-92448931 | MS.gene80181:CDS |
| TGACAGCCATGCTCTTGGTT+TGG | 0.284901 | 3.4:-92449082 | MS.gene80181:CDS |
| GCTTCCAACCAGTCTCTTCT+TGG | 0.285153 | 3.4:+92449255 | None:intergenic |
| GTCATCATTCATTAGCAAAT+AGG | 0.315280 | 3.4:+92449412 | None:intergenic |
| TTGGATTCTATGCATGCTTT+TGG | 0.316198 | 3.4:-92448350 | MS.gene80181:CDS |
| GCTTTGAGGTTAAGCCATTC+AGG | 0.317785 | 3.4:-92450053 | MS.gene80181:intron |
| TTATATTAAATGCTCTCATT+TGG | 0.322327 | 3.4:-92448932 | MS.gene80181:CDS |
| ACCATGATATTTGCTATCCT+TGG | 0.330022 | 3.4:-92449137 | MS.gene80181:CDS |
| TTCACAGGATTCTCAATTGC+AGG | 0.336074 | 3.4:+92448795 | None:intergenic |
| GCCTGCTCAGGGATCTGCCT+TGG | 0.337693 | 3.4:+92448759 | None:intergenic |
| CTTCCAACCAGTCTCTTCTT+GGG | 0.349041 | 3.4:+92449256 | None:intergenic |
| TTCATGTACCAGGCCTGCTC+AGG | 0.350610 | 3.4:+92448747 | None:intergenic |
| TCTTTATCCTCACCTCAATC+TGG | 0.357240 | 3.4:-92448662 | MS.gene80181:CDS |
| TGGCGGTCATACCTTACTTC+TGG | 0.362279 | 3.4:-92448513 | MS.gene80181:CDS |
| CCCACAACATTACACATTTG+TGG | 0.366682 | 3.4:+92450528 | None:intergenic |
| GCTTTCTCCTTCTACCTTCC+CGG | 0.371736 | 3.4:-92451670 | MS.gene80181:CDS |
| GGTTCCTCTCTCCTTCAAAC+CGG | 0.375085 | 3.4:-92449115 | MS.gene80181:CDS |
| AGGATAGTGCAGAAAATCTT+GGG | 0.390517 | 3.4:-92450860 | MS.gene80181:CDS |
| TTTGTGGTTACCGGTACTAT+TGG | 0.395492 | 3.4:-92448369 | MS.gene80181:CDS |
| CCTGCTCAGGGATCTGCCTT+GGG | 0.397639 | 3.4:+92448760 | None:intergenic |
| CTGTGTGTTTATGTTGGAAC+AGG | 0.398214 | 3.4:-92449188 | MS.gene80181:CDS |
| CATGTATCCAAAGTAAAATA+TGG | 0.398933 | 3.4:+92448413 | None:intergenic |
| CACAGCAAATCTGAGTTGTT+AGG | 0.400145 | 3.4:+92449206 | None:intergenic |
| AATAAAATGAGTACGGAAGC+TGG | 0.403462 | 3.4:+92450913 | None:intergenic |
| TGCTAGAATCGTGGGCTTTG+AGG | 0.404094 | 3.4:-92450067 | MS.gene80181:CDS |
| CCATGATATTTGCTATCCTT+GGG | 0.409788 | 3.4:-92449136 | MS.gene80181:CDS |
| CTTTAGTTGTTCCCATAAAA+CGG | 0.410146 | 3.4:-92450319 | MS.gene80181:CDS |
| TGTTCTCTTCCTTTCGGGCA+TGG | 0.411830 | 3.4:-92449351 | MS.gene80181:CDS |
| TCATCTGGAGCTGTGCCATT+TGG | 0.418785 | 3.4:-92448900 | MS.gene80181:CDS |
| CAGCTTTGTGATTTCAAGCT+TGG | 0.419934 | 3.4:+92448443 | None:intergenic |
| CAGGATAGTGCAGAAAATCT+TGG | 0.422003 | 3.4:-92450861 | MS.gene80181:CDS |
| AGTAATCCTCACTGCACAAC+TGG | 0.425366 | 3.4:+92448544 | None:intergenic |
| ATTTGGTACAATGTTTGCTC+TGG | 0.433667 | 3.4:-92448883 | MS.gene80181:CDS |
| GTTCCTCTCTCCTTCAAACC+GGG | 0.434696 | 3.4:-92449114 | MS.gene80181:CDS |
| ACAGCAAATCTGAGTTGTTA+GGG | 0.443885 | 3.4:+92449207 | None:intergenic |
| AGCGACGCCGGGAAGGTAGA+AGG | 0.446747 | 3.4:+92451663 | None:intergenic |
| GACTCAAAGGGCAGTATACC+GGG | 0.448506 | 3.4:-92450253 | MS.gene80181:CDS |
| GCTCATGACAGCCATGCTCT+TGG | 0.449410 | 3.4:-92449087 | MS.gene80181:CDS |
| CATTGAAAATTCACTATATG+TGG | 0.454070 | 3.4:-92450817 | MS.gene80181:intron |
| GGTTTCCATGTTGGACTCAA+AGG | 0.456598 | 3.4:-92450266 | MS.gene80181:CDS |
| GGCAGATCCCTGAGCAGGCC+TGG | 0.457305 | 3.4:-92448755 | MS.gene80181:CDS |
| CACATCTCTATGATACTTGA+CGG | 0.457417 | 3.4:+92450101 | None:intergenic |
| TCCCATAAAACGGAATGATC+AGG | 0.460700 | 3.4:-92450309 | MS.gene80181:CDS |
| AAAATGACAGAGACAATTGC+AGG | 0.461385 | 3.4:+92448957 | None:intergenic |
| TATCAGCTTGGTTTCCATGT+TGG | 0.466494 | 3.4:-92450275 | MS.gene80181:CDS |
| TTGCTCTCTTCAACTTCTTG+AGG | 0.468169 | 3.4:+92449822 | None:intergenic |
| AGAAGATCAATGACGAGTAT+CGG | 0.469743 | 3.4:-92450464 | MS.gene80181:CDS |
| GGACTCAAAGGGCAGTATAC+CGG | 0.471498 | 3.4:-92450254 | MS.gene80181:CDS |
| GAAGATCAATGACGAGTATC+GGG | 0.473535 | 3.4:-92450463 | MS.gene80181:CDS |
| AGAAGGAGAAAGCGGTGTGA+AGG | 0.477134 | 3.4:+92451680 | None:intergenic |
| GAAATCTTGTGGAGCGACGC+CGG | 0.479883 | 3.4:+92451651 | None:intergenic |
| GATTTGCTGTGTGTTTATGT+TGG | 0.480715 | 3.4:-92449194 | MS.gene80181:CDS |
| TCTCTCCTTCAAACCGGGGT+GGG | 0.482513 | 3.4:-92449109 | MS.gene80181:CDS |
| ATGAGCCCACCCCGGTTTGA+AGG | 0.482813 | 3.4:+92449104 | None:intergenic |
| GAGGGTCACATGTTGTCAAA+CGG | 0.488799 | 3.4:+92449877 | None:intergenic |
| GTTTCCATGTTGGACTCAAA+GGG | 0.490076 | 3.4:-92450265 | MS.gene80181:CDS |
| AGGGTCACATGTTGTCAAAC+GGG | 0.490682 | 3.4:+92449878 | None:intergenic |
| ACACGAGTATGATGGTAAAT+GGG | 0.490956 | 3.4:-92449913 | MS.gene80181:CDS |
| AGAATGTTGCATAAAGAAAG+AGG | 0.493377 | 3.4:+92448475 | None:intergenic |
| CCAATCAAAACAGAGAAGGC+TGG | 0.495505 | 3.4:+92448723 | None:intergenic |
| GGAAGTGAATAAAATGAGTA+CGG | 0.496741 | 3.4:+92450906 | None:intergenic |
| AAATCTTGTGGAGCGACGCC+GGG | 0.513081 | 3.4:+92451652 | None:intergenic |
| GAAGGCTGGGTTCATGTACC+AGG | 0.517535 | 3.4:+92448737 | None:intergenic |
| ACTGGTTGGAAGCTTGTCCA+TGG | 0.517914 | 3.4:-92449245 | MS.gene80181:CDS |
| GATTCTACCGTCTATCAGCT+TGG | 0.519977 | 3.4:-92450287 | MS.gene80181:CDS |
| CTCTCTCCTTCAAACCGGGG+TGG | 0.526606 | 3.4:-92449110 | MS.gene80181:CDS |
| AGAGCAAACATTGTACCAAA+TGG | 0.527636 | 3.4:+92448885 | None:intergenic |
| CCCAAGGCAGATCCCTGAGC+AGG | 0.531266 | 3.4:-92448760 | MS.gene80181:CDS |
| CCCAAGGATAGCAAATATCA+TGG | 0.533552 | 3.4:+92449136 | None:intergenic |
| AAGCCCAAGAAGAGACTGGT+TGG | 0.534521 | 3.4:-92449259 | MS.gene80181:CDS |
| CAATCAAAACAGAGAAGGCT+GGG | 0.541967 | 3.4:+92448724 | None:intergenic |
| GTATAACGAGCTTGAGACCC+AGG | 0.542211 | 3.4:-92449285 | MS.gene80181:CDS |
| ATATTAAATGCTCTCATTTG+GGG | 0.542556 | 3.4:-92448930 | MS.gene80181:CDS |
| GCCACAAATGTGTAATGTTG+TGG | 0.542830 | 3.4:-92450529 | MS.gene80181:CDS |
| CTGGTTGGAAGCTTGTCCAT+GGG | 0.544476 | 3.4:-92449244 | MS.gene80181:CDS |
| TGCATAGAATCCAATAGTAC+CGG | 0.547684 | 3.4:+92448359 | None:intergenic |
| GTGCGGAAGAACCAGAAGTA+AGG | 0.547713 | 3.4:+92448502 | None:intergenic |
| CGCTTGTACAAAATGTTCAA+AGG | 0.556072 | 3.4:-92449023 | MS.gene80181:CDS |
| TCAAGAAGTTGAAGAGAGCA+AGG | 0.556425 | 3.4:-92449820 | MS.gene80181:CDS |
| ACTGAATCTGCTAGAATCGT+GGG | 0.559429 | 3.4:-92450075 | MS.gene80181:CDS |
| ATAAAATGAGTACGGAAGCT+GGG | 0.562743 | 3.4:+92450914 | None:intergenic |
| ATGTGAAGTGGGCTTCAAGA+TGG | 0.563049 | 3.4:-92449439 | MS.gene80181:CDS |
| GGAACAAGGTTGCAGTCCTG+AGG | 0.563341 | 3.4:+92448979 | None:intergenic |
| CAAGCTTGAAATCACAAAGC+TGG | 0.563454 | 3.4:-92448442 | MS.gene80181:CDS |
| CGGTAAATGCCAAATGATTG+TGG | 0.563495 | 3.4:+92450121 | None:intergenic |
| TCATGTACCAGGCCTGCTCA+GGG | 0.566599 | 3.4:+92448748 | None:intergenic |
| TCAATGAAAACAGCTCCAAA+TGG | 0.567404 | 3.4:+92448690 | None:intergenic |
| AAACTGATTCAACCAGATTG+AGG | 0.568595 | 3.4:+92448650 | None:intergenic |
| AACTGAATCTGCTAGAATCG+TGG | 0.569950 | 3.4:-92450076 | MS.gene80181:CDS |
| GAAGAAGCCCAAGAAGAGAC+TGG | 0.572886 | 3.4:-92449263 | MS.gene80181:CDS |
| TTATGGGAACAACTAAAGGA+AGG | 0.576141 | 3.4:+92450324 | None:intergenic |
| TGAATGATGACCAAATTCAC+TGG | 0.577066 | 3.4:-92449400 | MS.gene80181:CDS |
| CCACAAATGTGTAATGTTGT+GGG | 0.579438 | 3.4:-92450528 | MS.gene80181:CDS |
| GTGAGGATTACTTGTGGTGG+TGG | 0.581791 | 3.4:-92448533 | MS.gene80181:CDS |
| AATCTTGGGGAAGTTCTTCG+TGG | 0.582702 | 3.4:-92450846 | MS.gene80181:CDS |
| AGTACCTTAAAGAAATCTTG+TGG | 0.582843 | 3.4:+92451640 | None:intergenic |
| CTTGTGGAGCGACGCCGGGA+AGG | 0.583502 | 3.4:+92451656 | None:intergenic |
| AGAGACAATTGCAGGGAACA+AGG | 0.584334 | 3.4:+92448965 | None:intergenic |
| CGTTATACTTTGCAATGTCA+CGG | 0.586779 | 3.4:+92449300 | None:intergenic |
| AGGATTACTTGTGGTGGTGG+CGG | 0.591655 | 3.4:-92448530 | MS.gene80181:CDS |
| ACAACTGTGTGCTTAGCATG+AGG | 0.593523 | 3.4:+92449858 | None:intergenic |
| GAACAAGGTTGCAGTCCTGA+GGG | 0.599617 | 3.4:+92448980 | None:intergenic |
| CAACTGTGTGCTTAGCATGA+GGG | 0.605991 | 3.4:+92449859 | None:intergenic |
| AGTGTTAAACACGAGTATGA+TGG | 0.607329 | 3.4:-92449921 | MS.gene80181:CDS |
| TGTGAAGTGGGCTTCAAGAT+GGG | 0.611136 | 3.4:-92449438 | MS.gene80181:CDS |
| AGTGGAAAAGAATTGCCCTC+AGG | 0.612537 | 3.4:-92448995 | MS.gene80181:CDS |
| GAAAACCCAAACCAAGAGCA+TGG | 0.614652 | 3.4:+92449076 | None:intergenic |
| TCATTGCCACCATGCCCGAA+AGG | 0.619231 | 3.4:+92449342 | None:intergenic |
| TTTCAGCACAAGTGACAACA+AGG | 0.619677 | 3.4:+92448589 | None:intergenic |
| TGCAGGAGAGTGATGTGAAG+TGG | 0.630793 | 3.4:-92449451 | MS.gene80181:intron |
| CTACTTCCAGTTGTGCAGTG+AGG | 0.631692 | 3.4:-92448550 | MS.gene80181:CDS |
| ATGGAAACCAAGCTGATAGA+CGG | 0.633306 | 3.4:+92450280 | None:intergenic |
| TGAAAACAAACAAAATCCCA+AGG | 0.637171 | 3.4:-92448776 | MS.gene80181:CDS |
| TTCCTCTCTCCTTCAAACCG+GGG | 0.639857 | 3.4:-92449113 | MS.gene80181:CDS |
| GCAGGAGAGTGATGTGAAGT+GGG | 0.642804 | 3.4:-92449450 | MS.gene80181:intron |
| TTGAAGGAGAGAGGAACCCA+AGG | 0.649137 | 3.4:+92449120 | None:intergenic |
| GGATAGTGCAGAAAATCTTG+GGG | 0.654034 | 3.4:-92450859 | MS.gene80181:CDS |
| TCTCTTCCTTTCGGGCATGG+TGG | 0.655153 | 3.4:-92449348 | MS.gene80181:CDS |
| GCAGTGAGGATTACTTGTGG+TGG | 0.656188 | 3.4:-92448536 | MS.gene80181:CDS |
| AAATGACAGAGACAATTGCA+GGG | 0.656961 | 3.4:+92448958 | None:intergenic |
| GGGGCCTAAATACATCCCCA+TGG | 0.661749 | 3.4:+92449228 | None:intergenic |
| CACCCCGGTTTGAAGGAGAG+AGG | 0.665310 | 3.4:+92449111 | None:intergenic |
| TGGCTGTCATGAGCCCACCC+CGG | 0.665939 | 3.4:+92449096 | None:intergenic |
| CAGCAAATCTGAGTTGTTAG+GGG | 0.667045 | 3.4:+92449208 | None:intergenic |
| ACTGCCCTTTGAGTCCAACA+TGG | 0.674258 | 3.4:+92450261 | None:intergenic |
| AGCAAATCTGAGTTGTTAGG+GGG | 0.675452 | 3.4:+92449209 | None:intergenic |
| AAATGTTCAAAGGATCAGAG+TGG | 0.690463 | 3.4:-92449013 | MS.gene80181:CDS |
| TGTGCAGTGAGGATTACTTG+TGG | 0.692738 | 3.4:-92448539 | MS.gene80181:CDS |
| ATAAAGAAAGAGGTATAGTG+CGG | 0.699094 | 3.4:+92448485 | None:intergenic |
| GATTCAACCAGATTGAGGTG+AGG | 0.702133 | 3.4:+92448655 | None:intergenic |
| TGGTTGGAAGCTTGTCCATG+GGG | 0.704860 | 3.4:-92449243 | MS.gene80181:CDS |
| CTGGAAGTAGCAGAGCACAA+TGG | 0.716782 | 3.4:+92448563 | None:intergenic |
| GGGAAGGTAGAAGGAGAAAG+CGG | 0.717499 | 3.4:+92451672 | None:intergenic |
| ACTCAAAGGGCAGTATACCG+GGG | 0.753482 | 3.4:-92450252 | MS.gene80181:intron |
| AACGAATGTACAGAGCAAGG+AGG | 0.788698 | 3.4:-92450157 | MS.gene80181:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAATTTTTTAGTTTCTA+TGG | - | chr3.4:92449437-92449456 | MS.gene80181:CDS | 10.0% |
| !! | ATAAATGTTAAAAAATTGCT+TGG | + | chr3.4:92449416-92449435 | None:intergenic | 15.0% |
| !! | CTTAATGAAATATATAGTTT+AGG | - | chr3.4:92449295-92449314 | MS.gene80181:CDS | 15.0% |
| !!! | ATTGATGAACATTTTTATAA+TGG | - | chr3.4:92450422-92450441 | MS.gene80181:intron | 15.0% |
| !!! | GTGTTTTTTTTTTTTTTTTG+TGG | - | chr3.4:92448976-92448995 | MS.gene80181:CDS | 15.0% |
| !! | GTCAATTGTTGAAAATAAAA+TGG | + | chr3.4:92450047-92450066 | None:intergenic | 20.0% |
| !! | GTTATTAACATACATGAATT+AGG | - | chr3.4:92450325-92450344 | MS.gene80181:CDS | 20.0% |
| !! | TAAAATATTTCTTTGTTGCA+GGG | - | chr3.4:92449057-92449076 | MS.gene80181:CDS | 20.0% |
| !! | TACTAATAATCGTTGATATA+CGG | - | chr3.4:92448625-92448644 | MS.gene80181:CDS | 20.0% |
| !! | TATATTAAATGCTCTCATTT+GGG | - | chr3.4:92451107-92451126 | MS.gene80181:intron | 20.0% |
| !! | TTAAAATATTTCTTTGTTGC+AGG | - | chr3.4:92449056-92449075 | MS.gene80181:CDS | 20.0% |
| !! | TTATATTAAATGCTCTCATT+TGG | - | chr3.4:92451106-92451125 | MS.gene80181:intron | 20.0% |
| !!! | TCATCTTTTTGTTTAGTATT+TGG | - | chr3.4:92450067-92450086 | MS.gene80181:CDS | 20.0% |
| !!! | TTTCAAGTTATATCTCATAA+TGG | - | chr3.4:92449660-92449679 | MS.gene80181:intron | 20.0% |
| !!! | TTTTTATCAGTTTCTAAGAA+AGG | - | chr3.4:92449268-92449287 | MS.gene80181:CDS | 20.0% |
| ! | AAGTAAGTAAGGAAACTTAT+TGG | + | chr3.4:92449855-92449874 | None:intergenic | 25.0% |
| ! | AGATTGAATCTTAATTTCAG+TGG | - | chr3.4:92448581-92448600 | MS.gene80181:CDS | 25.0% |
| ! | ATATTAAATGCTCTCATTTG+GGG | - | chr3.4:92451108-92451127 | MS.gene80181:intron | 25.0% |
| ! | CATGTATCCAAAGTAAAATA+TGG | + | chr3.4:92451628-92451647 | None:intergenic | 25.0% |
| ! | CATTGAAAATTCACTATATG+TGG | - | chr3.4:92449221-92449240 | MS.gene80181:CDS | 25.0% |
| ! | GATAGAAGAAAAAGAAAAGT+TGG | + | chr3.4:92450461-92450480 | None:intergenic | 25.0% |
| ! | GTTATTATTTGATTCCGATT+TGG | - | chr3.4:92449459-92449478 | MS.gene80181:intron | 25.0% |
| !! | AATCAGTTTTACTACATCTT+TGG | - | chr3.4:92451402-92451421 | MS.gene80181:intron | 25.0% |
| !! | ATCAGTTTTACTACATCTTT+GGG | - | chr3.4:92451403-92451422 | MS.gene80181:intron | 25.0% |
| !! | CATATAGTGAATTTTCAATG+CGG | + | chr3.4:92449221-92449240 | None:intergenic | 25.0% |
| !! | GTATTTTATCCACAATCATT+TGG | - | chr3.4:92449908-92449927 | MS.gene80181:CDS | 25.0% |
| !!! | TCTTTTTGTTTAGTATTTGG+TGG | - | chr3.4:92450070-92450089 | MS.gene80181:CDS | 25.0% |
| AAATACAGATCGAGAAGAAA+TGG | + | chr3.4:92448431-92448450 | None:intergenic | 30.0% | |
| AATGATTGTTCTCTTCCTTT+CGG | - | chr3.4:92450681-92450700 | MS.gene80181:intron | 30.0% | |
| AATGTTCATCAATGCAAAAG+AGG | + | chr3.4:92450415-92450434 | None:intergenic | 30.0% | |
| ACTGAAATATACCACCAAAT+CGG | + | chr3.4:92449476-92449495 | None:intergenic | 30.0% | |
| AGAAAACTCGCAGAAAATAA+CGG | + | chr3.4:92449618-92449637 | None:intergenic | 30.0% | |
| AGAATGTTGCATAAAGAAAG+AGG | + | chr3.4:92451566-92451585 | None:intergenic | 30.0% | |
| AGTACCTTAAAGAAATCTTG+TGG | + | chr3.4:92448401-92448420 | None:intergenic | 30.0% | |
| ATGTTCATCAATGCAAAAGA+GGG | + | chr3.4:92450414-92450433 | None:intergenic | 30.0% | |
| CACAAAAATAATGACCTGAA+TGG | + | chr3.4:92450002-92450021 | None:intergenic | 30.0% | |
| CTTTAGTTGTTCCCATAAAA+CGG | - | chr3.4:92449719-92449738 | MS.gene80181:intron | 30.0% | |
| GATAGCTGCATTACATTTAA+AGG | + | chr3.4:92448920-92448939 | None:intergenic | 30.0% | |
| GGAAGTGAATAAAATGAGTA+CGG | + | chr3.4:92449135-92449154 | None:intergenic | 30.0% | |
| GTATTGAATAACAATAGCCA+TGG | + | chr3.4:92449833-92449852 | None:intergenic | 30.0% | |
| GTCATCATTCATTAGCAAAT+AGG | + | chr3.4:92450629-92450648 | None:intergenic | 30.0% | |
| TAATAATCGTTGATATACGG+AGG | - | chr3.4:92448628-92448647 | MS.gene80181:CDS | 30.0% | |
| TCGTTCAGATAAAGTAAGTA+AGG | + | chr3.4:92449866-92449885 | None:intergenic | 30.0% | |
| TGAAAACAAACAAAATCCCA+AGG | - | chr3.4:92451262-92451281 | MS.gene80181:intron | 30.0% | |
| TTCACCATAACAAAAAAGAG+AGG | + | chr3.4:92450514-92450533 | None:intergenic | 30.0% | |
| ! | ATAAAGAAAGAGGTATAGTG+CGG | + | chr3.4:92451556-92451575 | None:intergenic | 30.0% |
| ! | TTCTTTTTCTTCTATCCAAC+TGG | - | chr3.4:92450465-92450484 | MS.gene80181:CDS | 30.0% |
| ! | TTTGAACTCCTTAGCATTTT+TGG | + | chr3.4:92449553-92449572 | None:intergenic | 30.0% |
| !! | AATAACCATTCTAAAGCACA+GGG | + | chr3.4:92450311-92450330 | None:intergenic | 30.0% |
| !! | ATTATTTGATTCCGATTTGG+TGG | - | chr3.4:92449462-92449481 | MS.gene80181:intron | 30.0% |
| !! | TAATAACCATTCTAAAGCAC+AGG | + | chr3.4:92450312-92450331 | None:intergenic | 30.0% |
| !!! | GAACAGGTGTTCAATTTTTT+GGG | - | chr3.4:92450866-92450885 | MS.gene80181:CDS | 30.0% |
| !!! | TCATCCTCTCTTTTTTGTTA+TGG | - | chr3.4:92450507-92450526 | MS.gene80181:CDS | 30.0% |
| AAAATGACAGAGACAATTGC+AGG | + | chr3.4:92451084-92451103 | None:intergenic | 35.0% | |
| AAATGACAGAGACAATTGCA+GGG | + | chr3.4:92451083-92451102 | None:intergenic | 35.0% | |
| AAATGTTCAAAGGATCAGAG+TGG | - | chr3.4:92451025-92451044 | MS.gene80181:intron | 35.0% | |
| AACACGAGTATGATGGTAAA+TGG | - | chr3.4:92450124-92450143 | MS.gene80181:CDS | 35.0% | |
| AATAAAATGAGTACGGAAGC+TGG | + | chr3.4:92449128-92449147 | None:intergenic | 35.0% | |
| AATGAAGAAGACAATCCAGT+TGG | + | chr3.4:92450483-92450502 | None:intergenic | 35.0% | |
| AATGTGGTTATCCAATTCAG+AGG | + | chr3.4:92449330-92449349 | None:intergenic | 35.0% | |
| ACAAAACAATATGCATACCC+CGG | + | chr3.4:92449806-92449825 | None:intergenic | 35.0% | |
| ACACGAGTATGATGGTAAAT+GGG | - | chr3.4:92450125-92450144 | MS.gene80181:CDS | 35.0% | |
| ACAGCAAATCTGAGTTGTTA+GGG | + | chr3.4:92450834-92450853 | None:intergenic | 35.0% | |
| ACGAATCAGATAATCTTCGA+TGG | - | chr3.4:92448818-92448837 | MS.gene80181:CDS | 35.0% | |
| ACTTGATGCCAAAAATGCTA+AGG | - | chr3.4:92449542-92449561 | MS.gene80181:intron | 35.0% | |
| AGAAGATCAATGACGAGTAT+CGG | - | chr3.4:92449574-92449593 | MS.gene80181:intron | 35.0% | |
| AGAGCAAACATTGTACCAAA+TGG | + | chr3.4:92451156-92451175 | None:intergenic | 35.0% | |
| AGGATAGTGCAGAAAATCTT+GGG | - | chr3.4:92449178-92449197 | MS.gene80181:CDS | 35.0% | |
| AGTGTTAAACACGAGTATGA+TGG | - | chr3.4:92450117-92450136 | MS.gene80181:CDS | 35.0% | |
| ATAAAATGAGTACGGAAGCT+GGG | + | chr3.4:92449127-92449146 | None:intergenic | 35.0% | |
| ATGATTGTTCTCTTCCTTTC+GGG | - | chr3.4:92450682-92450701 | MS.gene80181:intron | 35.0% | |
| ATTTGGTACAATGTTTGCTC+TGG | - | chr3.4:92451155-92451174 | MS.gene80181:intron | 35.0% | |
| CAATAGAGAACCAGTGAATT+TGG | + | chr3.4:92450651-92450670 | None:intergenic | 35.0% | |
| CACATCTCTATGATACTTGA+CGG | + | chr3.4:92449940-92449959 | None:intergenic | 35.0% | |
| CCACAAATGTGTAATGTTGT+GGG | - | chr3.4:92449510-92449529 | MS.gene80181:intron | 35.0% | |
| CGCTTGTACAAAATGTTCAA+AGG | - | chr3.4:92451015-92451034 | MS.gene80181:intron | 35.0% | |
| CGTTATACTTTGCAATGTCA+CGG | + | chr3.4:92450741-92450760 | None:intergenic | 35.0% | |
| GTGTAGTTAGGAATAGATGT+TGG | - | chr3.4:92448782-92448801 | MS.gene80181:CDS | 35.0% | |
| TAAGTTCCACATGTGTAGTT+AGG | - | chr3.4:92448770-92448789 | MS.gene80181:CDS | 35.0% | |
| TCAATGAAAACAGCTCCAAA+TGG | + | chr3.4:92451351-92451370 | None:intergenic | 35.0% | |
| TCTATTCCTAACTACACATG+TGG | + | chr3.4:92448779-92448798 | None:intergenic | 35.0% | |
| TGAATGATGACCAAATTCAC+TGG | - | chr3.4:92450638-92450657 | MS.gene80181:intron | 35.0% | |
| TGCATAGAATCCAATAGTAC+CGG | + | chr3.4:92451682-92451701 | None:intergenic | 35.0% | |
| TTATGGGAACAACTAAAGGA+AGG | + | chr3.4:92449717-92449736 | None:intergenic | 35.0% | |
| TTGTGGTCATAAACTTGATC+TGG | - | chr3.4:92448993-92449012 | MS.gene80181:CDS | 35.0% | |
| TTTAGCCAACTTTGATTGCA+CGG | - | chr3.4:92448710-92448729 | MS.gene80181:CDS | 35.0% | |
| ! | AAACTGATTCAACCAGATTG+AGG | + | chr3.4:92451391-92451410 | None:intergenic | 35.0% |
| ! | ACTATCCTGTATCTTTTTGG+GGG | + | chr3.4:92449166-92449185 | None:intergenic | 35.0% |
| ! | ATCCTGATCATTCCGTTTTA+TGG | + | chr3.4:92449734-92449753 | None:intergenic | 35.0% |
| ! | CACTATCCTGTATCTTTTTG+GGG | + | chr3.4:92449167-92449186 | None:intergenic | 35.0% |
| ! | CGTTTTATGGGAACAACTAA+AGG | + | chr3.4:92449721-92449740 | None:intergenic | 35.0% |
| ! | GCACTATCCTGTATCTTTTT+GGG | + | chr3.4:92449168-92449187 | None:intergenic | 35.0% |
| ! | GTGTCAGCCATATTTTACTT+TGG | - | chr3.4:92451618-92451637 | MS.gene80181:intron | 35.0% |
| ! | GTTTTCATGGGAATATTTGC+TGG | - | chr3.4:92450979-92450998 | MS.gene80181:intron | 35.0% |
| ! | GTTTTTGTGGGTAGCTATAT+TGG | - | chr3.4:92451210-92451229 | MS.gene80181:intron | 35.0% |
| ! | TCCTGATCATTCCGTTTTAT+GGG | + | chr3.4:92449733-92449752 | None:intergenic | 35.0% |
| ! | TCTAGAATCCTGCAAATGAT+AGG | + | chr3.4:92449691-92449710 | None:intergenic | 35.0% |
| ! | TGCACTATCCTGTATCTTTT+TGG | + | chr3.4:92449169-92449188 | None:intergenic | 35.0% |
| ! | TTGGATTCTATGCATGCTTT+TGG | - | chr3.4:92451688-92451707 | MS.gene80181:CDS | 35.0% |
| !! | ACCATGATATTTGCTATCCT+TGG | - | chr3.4:92450901-92450920 | MS.gene80181:CDS | 35.0% |
| !! | CACATATGATGTTGATTTCC+AGG | - | chr3.4:92450251-92450270 | MS.gene80181:intron | 35.0% |
| !! | CATATTGTTTTGTAGCACCA+TGG | - | chr3.4:92449813-92449832 | MS.gene80181:CDS | 35.0% |
| !! | CCATGATATTTGCTATCCTT+GGG | - | chr3.4:92450902-92450921 | MS.gene80181:CDS | 35.0% |
| !! | CTCTGGTCTTTTTATGGTTT+GGG | - | chr3.4:92451172-92451191 | MS.gene80181:intron | 35.0% |
| !! | GATTTGCTGTGTGTTTATGT+TGG | - | chr3.4:92450844-92450863 | MS.gene80181:CDS | 35.0% |
| !! | GGGATTTTGTTTGTTTTCAC+AGG | + | chr3.4:92451261-92451280 | None:intergenic | 35.0% |
| !! | TGTTTGCTCTGGTCTTTTTA+TGG | - | chr3.4:92451166-92451185 | MS.gene80181:intron | 35.0% |
| !! | TTATTATCCGCTTTTGCCTT+TGG | - | chr3.4:92450556-92450575 | MS.gene80181:intron | 35.0% |
| !!! | AGCTTCTTATGCGTTTTTTG+TGG | - | chr3.4:92451653-92451672 | MS.gene80181:CDS | 35.0% |
| !!! | GGAACAGGTGTTCAATTTTT+TGG | - | chr3.4:92450865-92450884 | MS.gene80181:CDS | 35.0% |
| !!! | TATGCGTTTTTTGTGGTTAC+CGG | - | chr3.4:92451660-92451679 | MS.gene80181:CDS | 35.0% |
| !!! | TCAGTTCCACTTGTTTTTGT+GGG | - | chr3.4:92451198-92451217 | MS.gene80181:intron | 35.0% |
| AACCACATTTGCAGAGTTGA+TGG | - | chr3.4:92449341-92449360 | MS.gene80181:CDS | 40.0% | |
| AACTGAATCTGCTAGAATCG+TGG | - | chr3.4:92449962-92449981 | MS.gene80181:intron | 40.0% | |
| AATGTAATGCAGCTATCTGC+TGG | - | chr3.4:92448923-92448942 | MS.gene80181:CDS | 40.0% | |
| ACAAACCGTGCAATCAAAGT+TGG | + | chr3.4:92448718-92448737 | None:intergenic | 40.0% | |
| ACTGAATCTGCTAGAATCGT+GGG | - | chr3.4:92449963-92449982 | MS.gene80181:intron | 40.0% | |
| AGCAAATCTGAGTTGTTAGG+GGG | + | chr3.4:92450832-92450851 | None:intergenic | 40.0% | |
| ATGGAAACCAAGCTGATAGA+CGG | + | chr3.4:92449761-92449780 | None:intergenic | 40.0% | |
| ATTGGGGGAATACTTCCATT+TGG | - | chr3.4:92451333-92451352 | MS.gene80181:intron | 40.0% | |
| ATTGGTGTGAGGGTTGAAAT+TGG | - | chr3.4:92450358-92450377 | MS.gene80181:intron | 40.0% | |
| CAAGCTTGAAATCACAAAGC+TGG | - | chr3.4:92451596-92451615 | MS.gene80181:intron | 40.0% | |
| CAATCAAAACAGAGAAGGCT+GGG | + | chr3.4:92451317-92451336 | None:intergenic | 40.0% | |
| CACAGCAAATCTGAGTTGTT+AGG | + | chr3.4:92450835-92450854 | None:intergenic | 40.0% | |
| CAGCAAATCTGAGTTGTTAG+GGG | + | chr3.4:92450833-92450852 | None:intergenic | 40.0% | |
| CAGGATAGTGCAGAAAATCT+TGG | - | chr3.4:92449177-92449196 | MS.gene80181:CDS | 40.0% | |
| CCCAAGGATAGCAAATATCA+TGG | + | chr3.4:92450905-92450924 | None:intergenic | 40.0% | |
| CCCACAACATTACACATTTG+TGG | + | chr3.4:92449513-92449532 | None:intergenic | 40.0% | |
| CGCTCCACAAGATTTCTTTA+AGG | - | chr3.4:92448394-92448413 | MS.gene80181:CDS | 40.0% | |
| CGGTAAATGCCAAATGATTG+TGG | + | chr3.4:92449920-92449939 | None:intergenic | 40.0% | |
| CTGTGTGTTTATGTTGGAAC+AGG | - | chr3.4:92450850-92450869 | MS.gene80181:CDS | 40.0% | |
| GAAGATCAATGACGAGTATC+GGG | - | chr3.4:92449575-92449594 | MS.gene80181:intron | 40.0% | |
| GCCACAAATGTGTAATGTTG+TGG | - | chr3.4:92449509-92449528 | MS.gene80181:intron | 40.0% | |
| GGAACAGTTAACCTCTGAAT+TGG | - | chr3.4:92449316-92449335 | MS.gene80181:CDS | 40.0% | |
| GGATAGTGCAGAAAATCTTG+GGG | - | chr3.4:92449179-92449198 | MS.gene80181:CDS | 40.0% | |
| GGATGATGAAGACCAAAAAG+AGG | + | chr3.4:92451431-92451450 | None:intergenic | 40.0% | |
| GTTTCCATGTTGGACTCAAA+GGG | - | chr3.4:92449773-92449792 | MS.gene80181:intron | 40.0% | |
| TAGCTACCCACAAAAACAAG+TGG | + | chr3.4:92451207-92451226 | None:intergenic | 40.0% | |
| TATCAGCTTGGTTTCCATGT+TGG | - | chr3.4:92449763-92449782 | MS.gene80181:intron | 40.0% | |
| TCAAGAAGTTGAAGAGAGCA+AGG | - | chr3.4:92450218-92450237 | MS.gene80181:intron | 40.0% | |
| TCCCATAAAACGGAATGATC+AGG | - | chr3.4:92449729-92449748 | MS.gene80181:intron | 40.0% | |
| TCTTTATCCTCACCTCAATC+TGG | - | chr3.4:92451376-92451395 | MS.gene80181:intron | 40.0% | |
| TGGGTAATCGCTCATTAACT+TGG | - | chr3.4:92449361-92449380 | MS.gene80181:CDS | 40.0% | |
| TTCACAGGATTCTCAATTGC+AGG | + | chr3.4:92451246-92451265 | None:intergenic | 40.0% | |
| TTGATATACGGAGGATTGTG+AGG | - | chr3.4:92448637-92448656 | MS.gene80181:CDS | 40.0% | |
| TTGCTCTCTTCAACTTCTTG+AGG | + | chr3.4:92450219-92450238 | None:intergenic | 40.0% | |
| TTGTCCATGGGGATGTATTT+AGG | - | chr3.4:92450806-92450825 | MS.gene80181:intron | 40.0% | |
| TTTCAGCACAAGTGACAACA+AGG | + | chr3.4:92451452-92451471 | None:intergenic | 40.0% | |
| TTTGTGGTTACCGGTACTAT+TGG | - | chr3.4:92451669-92451688 | MS.gene80181:CDS | 40.0% | |
| ! | ACCACATTTGCAGAGTTGAT+GGG | - | chr3.4:92449342-92449361 | MS.gene80181:CDS | 40.0% |
| ! | ATTTGGGGCCAAAAATCATC+TGG | - | chr3.4:92451123-92451142 | MS.gene80181:intron | 40.0% |
| ! | CAGCTTTGTGATTTCAAGCT+TGG | + | chr3.4:92451598-92451617 | None:intergenic | 40.0% |
| ! | CATACATGAATTAGGCACTG+AGG | - | chr3.4:92450333-92450352 | MS.gene80181:CDS | 40.0% |
| ! | GTTGAAATTGGTCTGTCGTT+TGG | - | chr3.4:92450370-92450389 | MS.gene80181:intron | 40.0% |
| !! | CATCTTTGGGTTCCTCTTTT+TGG | - | chr3.4:92451416-92451435 | MS.gene80181:intron | 40.0% |
| !! | CTATACCCTGTGCTTTAGAA+TGG | - | chr3.4:92450303-92450322 | MS.gene80181:CDS | 40.0% |
| !! | GAATTAGGCACTGAGGTAAT+TGG | - | chr3.4:92450340-92450359 | MS.gene80181:intron | 40.0% |
| !! | GCTCTGGTCTTTTTATGGTT+TGG | - | chr3.4:92451171-92451190 | MS.gene80181:intron | 40.0% |
| !! | TGGTTTTGCCTATCATTTGC+AGG | - | chr3.4:92449680-92449699 | MS.gene80181:intron | 40.0% |
| !!! | AGCCTTCTCTGTTTTGATTG+GGG | - | chr3.4:92451317-92451336 | MS.gene80181:intron | 40.0% |
| !!! | ATGCATGCTTTTGGTTCACA+AGG | - | chr3.4:92451697-92451716 | MS.gene80181:CDS | 40.0% |
| !!! | CAGCCTTCTCTGTTTTGATT+GGG | - | chr3.4:92451316-92451335 | MS.gene80181:intron | 40.0% |
| !!! | CTCAGTTCCACTTGTTTTTG+TGG | - | chr3.4:92451197-92451216 | MS.gene80181:intron | 40.0% |
| !!! | CTCTTGGTTTGGGTTTTCAT+GGG | - | chr3.4:92450967-92450986 | MS.gene80181:intron | 40.0% |
| AACGAATGTACAGAGCAAGG+AGG | - | chr3.4:92449881-92449900 | MS.gene80181:CDS | 45.0% | |
| AATCTTGGGGAAGTTCTTCG+TGG | - | chr3.4:92449192-92449211 | MS.gene80181:CDS | 45.0% | |
| ACAACTGTGTGCTTAGCATG+AGG | + | chr3.4:92450183-92450202 | None:intergenic | 45.0% | |
| ACCCATCAACTCTGCAAATG+TGG | + | chr3.4:92449346-92449365 | None:intergenic | 45.0% | |
| AGAGACAATTGCAGGGAACA+AGG | + | chr3.4:92451076-92451095 | None:intergenic | 45.0% | |
| AGGGTCACATGTTGTCAAAC+GGG | + | chr3.4:92450163-92450182 | None:intergenic | 45.0% | |
| AGTAATCCTCACTGCACAAC+TGG | + | chr3.4:92451497-92451516 | None:intergenic | 45.0% | |
| AGTGGAAAAGAATTGCCCTC+AGG | - | chr3.4:92451043-92451062 | MS.gene80181:intron | 45.0% | |
| ATAGCAGCCAAAGGCAAAAG+CGG | + | chr3.4:92450566-92450585 | None:intergenic | 45.0% | |
| CAACTGTGTGCTTAGCATGA+GGG | + | chr3.4:92450182-92450201 | None:intergenic | 45.0% | |
| CACTGAGGTAATTGGTGTGA+GGG | - | chr3.4:92450348-92450367 | MS.gene80181:intron | 45.0% | |
| CCAATCAAAACAGAGAAGGC+TGG | + | chr3.4:92451318-92451337 | None:intergenic | 45.0% | |
| CTGAACGAATGTACAGAGCA+AGG | - | chr3.4:92449878-92449897 | MS.gene80181:CDS | 45.0% | |
| CTTCCAACCAGTCTCTTCTT+GGG | + | chr3.4:92450785-92450804 | None:intergenic | 45.0% | |
| GAAAACCCAAACCAAGAGCA+TGG | + | chr3.4:92450965-92450984 | None:intergenic | 45.0% | |
| GAGGGTCACATGTTGTCAAA+CGG | + | chr3.4:92450164-92450183 | None:intergenic | 45.0% | |
| GATTCAACCAGATTGAGGTG+AGG | + | chr3.4:92451386-92451405 | None:intergenic | 45.0% | |
| GATTCTACCGTCTATCAGCT+TGG | - | chr3.4:92449751-92449770 | MS.gene80181:intron | 45.0% | |
| GGTTTCCATGTTGGACTCAA+AGG | - | chr3.4:92449772-92449791 | MS.gene80181:intron | 45.0% | |
| TATCAGCTCATAAGCTCACC+TGG | + | chr3.4:92450272-92450291 | None:intergenic | 45.0% | |
| TCCCCCAATCAAAACAGAGA+AGG | + | chr3.4:92451322-92451341 | None:intergenic | 45.0% | |
| TGTGCAGTGAGGATTACTTG+TGG | - | chr3.4:92451499-92451518 | MS.gene80181:intron | 45.0% | |
| ! | ATGTGAAGTGGGCTTCAAGA+TGG | - | chr3.4:92450599-92450618 | MS.gene80181:intron | 45.0% |
| ! | GAAATTGGTCTGTCGTTTGG+CGG | - | chr3.4:92450373-92450392 | MS.gene80181:intron | 45.0% |
| ! | GCACAGCTCCAGATGATTTT+TGG | + | chr3.4:92451134-92451153 | None:intergenic | 45.0% |
| ! | TGTGAAGTGGGCTTCAAGAT+GGG | - | chr3.4:92450600-92450619 | MS.gene80181:intron | 45.0% |
| !! | ATCTTTTTGGGGGCAGGATA+AGG | + | chr3.4:92449156-92449175 | None:intergenic | 45.0% |
| !! | GCTTTGAGGTTAAGCCATTC+AGG | - | chr3.4:92449985-92450004 | MS.gene80181:intron | 45.0% |
| !!! | CCAGCCTTCTCTGTTTTGAT+TGG | - | chr3.4:92451315-92451334 | MS.gene80181:intron | 45.0% |
| !!! | GCCTTCTCTGTTTTGATTGG+GGG | - | chr3.4:92451318-92451337 | MS.gene80181:intron | 45.0% |
| !!! | GCTCTTGGTTTGGGTTTTCA+TGG | - | chr3.4:92450966-92450985 | MS.gene80181:intron | 45.0% |
| AAGCCCAAGAAGAGACTGGT+TGG | - | chr3.4:92450779-92450798 | MS.gene80181:intron | 50.0% | |
| ACTCAAAGGGCAGTATACCG+GGG | - | chr3.4:92449786-92449805 | MS.gene80181:intron | 50.0% | |
| ACTGCCCTTTGAGTCCAACA+TGG | + | chr3.4:92449780-92449799 | None:intergenic | 50.0% | |
| ACTGGTTGGAAGCTTGTCCA+TGG | - | chr3.4:92450793-92450812 | MS.gene80181:intron | 50.0% | |
| AGAAGGAGAAAGCGGTGTGA+AGG | + | chr3.4:92448361-92448380 | None:intergenic | 50.0% | |
| CTACTTCCAGTTGTGCAGTG+AGG | - | chr3.4:92451488-92451507 | MS.gene80181:intron | 50.0% | |
| CTCTTCTTGGGCTTCTTCCT+GGG | + | chr3.4:92450773-92450792 | None:intergenic | 50.0% | |
| CTGGAAGTAGCAGAGCACAA+TGG | + | chr3.4:92451478-92451497 | None:intergenic | 50.0% | |
| CTGGTTGGAAGCTTGTCCAT+GGG | - | chr3.4:92450794-92450813 | MS.gene80181:intron | 50.0% | |
| GAACAAGGTTGCAGTCCTGA+GGG | + | chr3.4:92451061-92451080 | None:intergenic | 50.0% | |
| GAAGAAGCCCAAGAAGAGAC+TGG | - | chr3.4:92450775-92450794 | MS.gene80181:intron | 50.0% | |
| GACAGCCATGCTCTTGGTTT+GGG | - | chr3.4:92450957-92450976 | MS.gene80181:CDS | 50.0% | |
| GACTCAAAGGGCAGTATACC+GGG | - | chr3.4:92449785-92449804 | MS.gene80181:intron | 50.0% | |
| GCACTGAGGTAATTGGTGTG+AGG | - | chr3.4:92450347-92450366 | MS.gene80181:intron | 50.0% | |
| GCAGGAGAGTGATGTGAAGT+GGG | - | chr3.4:92450588-92450607 | MS.gene80181:intron | 50.0% | |
| GCAGTGAGGATTACTTGTGG+TGG | - | chr3.4:92451502-92451521 | MS.gene80181:intron | 50.0% | |
| GCTTCCAACCAGTCTCTTCT+TGG | + | chr3.4:92450786-92450805 | None:intergenic | 50.0% | |
| GCTTTCTCCTTCTACCTTCC+CGG | - | chr3.4:92448368-92448387 | MS.gene80181:CDS | 50.0% | |
| GGACTCAAAGGGCAGTATAC+CGG | - | chr3.4:92449784-92449803 | MS.gene80181:intron | 50.0% | |
| GGGAAGGTAGAAGGAGAAAG+CGG | + | chr3.4:92448369-92448388 | None:intergenic | 50.0% | |
| GGTTCCTCTCTCCTTCAAAC+CGG | - | chr3.4:92450923-92450942 | MS.gene80181:CDS | 50.0% | |
| GTATAACGAGCTTGAGACCC+AGG | - | chr3.4:92450753-92450772 | MS.gene80181:intron | 50.0% | |
| GTGAGGATTACTTGTGGTGG+TGG | - | chr3.4:92451505-92451524 | MS.gene80181:intron | 50.0% | |
| GTGCGGAAGAACCAGAAGTA+AGG | + | chr3.4:92451539-92451558 | None:intergenic | 50.0% | |
| GTTCCTCTCTCCTTCAAACC+GGG | - | chr3.4:92450924-92450943 | MS.gene80181:CDS | 50.0% | |
| TCCTGCCCCCAAAAAGATAC+AGG | - | chr3.4:92449158-92449177 | MS.gene80181:CDS | 50.0% | |
| TCTCTTCTTGGGCTTCTTCC+TGG | + | chr3.4:92450774-92450793 | None:intergenic | 50.0% | |
| TGACAGCCATGCTCTTGGTT+TGG | - | chr3.4:92450956-92450975 | MS.gene80181:CDS | 50.0% | |
| TGCAGGAGAGTGATGTGAAG+TGG | - | chr3.4:92450587-92450606 | MS.gene80181:intron | 50.0% | |
| TGCTAGAATCGTGGGCTTTG+AGG | - | chr3.4:92449971-92449990 | MS.gene80181:intron | 50.0% | |
| TGGCGGTCATACCTTACTTC+TGG | - | chr3.4:92451525-92451544 | MS.gene80181:intron | 50.0% | |
| TGGTTGGAAGCTTGTCCATG+GGG | - | chr3.4:92450795-92450814 | MS.gene80181:intron | 50.0% | |
| TGTTCTCTTCCTTTCGGGCA+TGG | - | chr3.4:92450687-92450706 | MS.gene80181:intron | 50.0% | |
| TTCCTCTCTCCTTCAAACCG+GGG | - | chr3.4:92450925-92450944 | MS.gene80181:CDS | 50.0% | |
| TTGAAGGAGAGAGGAACCCA+AGG | + | chr3.4:92450921-92450940 | None:intergenic | 50.0% | |
| ! | TCATCTGGAGCTGTGCCATT+TGG | - | chr3.4:92451138-92451157 | MS.gene80181:intron | 50.0% |
| !! | AGGATTACTTGTGGTGGTGG+CGG | - | chr3.4:92451508-92451527 | MS.gene80181:intron | 50.0% |
| !! | TCCTGTATCTTTTTGGGGGC+AGG | + | chr3.4:92449162-92449181 | None:intergenic | 50.0% |
| AAATCTTGTGGAGCGACGCC+GGG | + | chr3.4:92448389-92448408 | None:intergenic | 55.0% | |
| CTCCTGCAGATAGCAGCCAA+AGG | + | chr3.4:92450575-92450594 | None:intergenic | 55.0% | |
| GAAATCTTGTGGAGCGACGC+CGG | + | chr3.4:92448390-92448409 | None:intergenic | 55.0% | |
| GAAGGCTGGGTTCATGTACC+AGG | + | chr3.4:92451304-92451323 | None:intergenic | 55.0% | |
| GCTCATGACAGCCATGCTCT+TGG | - | chr3.4:92450951-92450970 | MS.gene80181:CDS | 55.0% | |
| GGAACAAGGTTGCAGTCCTG+AGG | + | chr3.4:92451062-92451081 | None:intergenic | 55.0% | |
| GGGGCCTAAATACATCCCCA+TGG | + | chr3.4:92450813-92450832 | None:intergenic | 55.0% | |
| TCATGTACCAGGCCTGCTCA+GGG | + | chr3.4:92451293-92451312 | None:intergenic | 55.0% | |
| TCATTGCCACCATGCCCGAA+AGG | + | chr3.4:92450699-92450718 | None:intergenic | 55.0% | |
| TCTCTCCTTCAAACCGGGGT+GGG | - | chr3.4:92450929-92450948 | MS.gene80181:CDS | 55.0% | |
| TCTCTTCCTTTCGGGCATGG+TGG | - | chr3.4:92450690-92450709 | MS.gene80181:intron | 55.0% | |
| TGCCTTTGGCTGCTATCTGC+AGG | - | chr3.4:92450570-92450589 | MS.gene80181:intron | 55.0% | |
| TTCATGTACCAGGCCTGCTC+AGG | + | chr3.4:92451294-92451313 | None:intergenic | 55.0% | |
| CCTGCTCAGGGATCTGCCTT+GGG | + | chr3.4:92451281-92451300 | None:intergenic | 60.0% | |
| CTCTCTCCTTCAAACCGGGG+TGG | - | chr3.4:92450928-92450947 | MS.gene80181:CDS | 60.0% | |
| ! | ATGAGCCCACCCCGGTTTGA+AGG | + | chr3.4:92450937-92450956 | None:intergenic | 60.0% |
| ! | CACCCCGGTTTGAAGGAGAG+AGG | + | chr3.4:92450930-92450949 | None:intergenic | 60.0% |
| AGCGACGCCGGGAAGGTAGA+AGG | + | chr3.4:92448378-92448397 | None:intergenic | 65.0% | |
| CCCAAGGCAGATCCCTGAGC+AGG | - | chr3.4:92451278-92451297 | MS.gene80181:intron | 65.0% | |
| GCCTGCTCAGGGATCTGCCT+TGG | + | chr3.4:92451282-92451301 | None:intergenic | 65.0% | |
| TGGCTGTCATGAGCCCACCC+CGG | + | chr3.4:92450945-92450964 | None:intergenic | 65.0% | |
| CTTGTGGAGCGACGCCGGGA+AGG | + | chr3.4:92448385-92448404 | None:intergenic | 70.0% | |
| GGCAGATCCCTGAGCAGGCC+TGG | - | chr3.4:92451283-92451302 | MS.gene80181:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92448311 | 92451749 | 92448311 | ID=MS.gene80181 |
| chr3.4 | mRNA | 92448311 | 92451749 | 92448311 | ID=MS.gene80181.t1;Parent=MS.gene80181 |
| chr3.4 | exon | 92451645 | 92451749 | 92451645 | ID=MS.gene80181.t1.exon1;Parent=MS.gene80181.t1 |
| chr3.4 | CDS | 92451645 | 92451749 | 92451645 | ID=cds.MS.gene80181.t1;Parent=MS.gene80181.t1 |
| chr3.4 | exon | 92450818 | 92450982 | 92450818 | ID=MS.gene80181.t1.exon2;Parent=MS.gene80181.t1 |
| chr3.4 | CDS | 92450818 | 92450982 | 92450818 | ID=cds.MS.gene80181.t1;Parent=MS.gene80181.t1 |
| chr3.4 | exon | 92450456 | 92450565 | 92450456 | ID=MS.gene80181.t1.exon3;Parent=MS.gene80181.t1 |
| chr3.4 | CDS | 92450456 | 92450565 | 92450456 | ID=cds.MS.gene80181.t1;Parent=MS.gene80181.t1 |
| chr3.4 | exon | 92450253 | 92450358 | 92450253 | ID=MS.gene80181.t1.exon4;Parent=MS.gene80181.t1 |
| chr3.4 | CDS | 92450253 | 92450358 | 92450253 | ID=cds.MS.gene80181.t1;Parent=MS.gene80181.t1 |
| chr3.4 | exon | 92450054 | 92450166 | 92450054 | ID=MS.gene80181.t1.exon5;Parent=MS.gene80181.t1 |
| chr3.4 | CDS | 92450054 | 92450166 | 92450054 | ID=cds.MS.gene80181.t1;Parent=MS.gene80181.t1 |
| chr3.4 | exon | 92449788 | 92449941 | 92449788 | ID=MS.gene80181.t1.exon6;Parent=MS.gene80181.t1 |
| chr3.4 | CDS | 92449788 | 92449941 | 92449788 | ID=cds.MS.gene80181.t1;Parent=MS.gene80181.t1 |
| chr3.4 | exon | 92448311 | 92449468 | 92448311 | ID=MS.gene80181.t1.exon7;Parent=MS.gene80181.t1 |
| chr3.4 | CDS | 92448311 | 92449468 | 92448311 | ID=cds.MS.gene80181.t1;Parent=MS.gene80181.t1 |
| Gene Sequence |
| Protein sequence |
