Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80703.t1 | XP_003613218.1 | 100 | 666 | 0 | 0 | 1 | 666 | 1 | 666 | 0.00E+00 | 1337.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80703.t1 | P42347 | 91.8 | 672 | 49 | 1 | 1 | 666 | 1 | 672 | 0.0e+00 | 1238.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80703.t1 | Q8GUA6 | 100.0 | 666 | 0 | 0 | 1 | 666 | 1 | 666 | 0.0e+00 | 1337.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene80703 | 0.801041 | 1.09E-48 | -1.69E-46 |
| MS.gene049404 | MS.gene80703 | 0.801217 | 9.99E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene80703 | 0.803148 | 4.00E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene80703 | 0.808633 | 2.81E-50 | -1.69E-46 |
| MS.gene050273 | MS.gene80703 | 0.801155 | 1.03E-48 | -1.69E-46 |
| MS.gene050348 | MS.gene80703 | 0.801882 | 7.30E-49 | -1.69E-46 |
| MS.gene050361 | MS.gene80703 | 0.80326 | 3.79E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene80703 | 0.820589 | 6.33E-53 | -1.69E-46 |
| MS.gene051198 | MS.gene80703 | 0.809241 | 2.09E-50 | -1.69E-46 |
| MS.gene051209 | MS.gene80703 | 0.803981 | 2.69E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene80703 | 0.823691 | 1.21E-53 | -1.69E-46 |
| MS.gene051543 | MS.gene80703 | 0.800937 | 1.14E-48 | -1.69E-46 |
| MS.gene051800 | MS.gene80703 | 0.825184 | 5.38E-54 | -1.69E-46 |
| MS.gene052037 | MS.gene80703 | 0.814631 | 1.40E-51 | -1.69E-46 |
| MS.gene052239 | MS.gene80703 | -0.82032 | 7.30E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene80703 | 0.816313 | 5.90E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene80703 | 0.837978 | 3.78E-57 | -1.69E-46 |
| MS.gene052674 | MS.gene80703 | 0.816995 | 4.15E-52 | -1.69E-46 |
| MS.gene052675 | MS.gene80703 | 0.822598 | 2.17E-53 | -1.69E-46 |
| MS.gene052677 | MS.gene80703 | 0.825879 | 3.68E-54 | -1.69E-46 |
| MS.gene052775 | MS.gene80703 | 0.800491 | 1.41E-48 | -1.69E-46 |
| MS.gene052776 | MS.gene80703 | 0.820148 | 7.99E-53 | -1.69E-46 |
| MS.gene053079 | MS.gene80703 | 0.816522 | 5.29E-52 | -1.69E-46 |
| MS.gene053486 | MS.gene80703 | 0.806235 | 9.08E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene80703 | 0.801171 | 1.02E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene80703 | 0.812492 | 4.13E-51 | -1.69E-46 |
| MS.gene055724 | MS.gene80703 | 0.81524 | 1.02E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene80703 | 0.800444 | 1.44E-48 | -1.69E-46 |
| MS.gene056480 | MS.gene80703 | 0.80885 | 2.53E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene80703 | 0.83838 | 2.98E-57 | -1.69E-46 |
| MS.gene056622 | MS.gene80703 | 0.820954 | 5.22E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene80703 | 0.840051 | 1.10E-57 | -1.69E-46 |
| MS.gene056973 | MS.gene80703 | 0.812794 | 3.54E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene80703 | 0.812251 | 4.66E-51 | -1.69E-46 |
| MS.gene057855 | MS.gene80703 | 0.805677 | 1.19E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene80703 | 0.83964 | 1.40E-57 | -1.69E-46 |
| MS.gene058010 | MS.gene80703 | 0.870127 | 1.85E-66 | -1.69E-46 |
| MS.gene058292 | MS.gene80703 | 0.820631 | 6.19E-53 | -1.69E-46 |
| MS.gene058919 | MS.gene80703 | 0.806021 | 1.01E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene80703 | 0.819648 | 1.04E-52 | -1.69E-46 |
| MS.gene059439 | MS.gene80703 | 0.825449 | 4.66E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene80703 | 0.81196 | 5.39E-51 | -1.69E-46 |
| MS.gene060167 | MS.gene80703 | 0.811426 | 7.04E-51 | -1.69E-46 |
| MS.gene060244 | MS.gene80703 | 0.802032 | 6.80E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene80703 | 0.840773 | 7.10E-58 | -1.69E-46 |
| MS.gene060933 | MS.gene80703 | 0.845036 | 5.21E-59 | -1.69E-46 |
| MS.gene060935 | MS.gene80703 | 0.818352 | 2.05E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene80703 | 0.815348 | 9.68E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80703.t1 | MTR_5g034120 | 100.000 | 666 | 0 | 0 | 1 | 666 | 1 | 666 | 0.0 | 1369 |
| MS.gene80703.t1 | MTR_3g116250 | 28.989 | 376 | 223 | 16 | 334 | 685 | 1555 | 1910 | 2.35e-21 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80703.t1 | AT1G60490 | 81.575 | 673 | 116 | 4 | 1 | 666 | 1 | 672 | 0.0 | 1124 |
| MS.gene80703.t1 | AT1G49340 | 26.376 | 436 | 276 | 16 | 274 | 686 | 1484 | 1897 | 2.60e-23 | 107 |
| MS.gene80703.t1 | AT1G49340 | 26.376 | 436 | 276 | 16 | 274 | 686 | 1484 | 1897 | 2.60e-23 | 107 |
| MS.gene80703.t1 | AT1G49340 | 26.376 | 436 | 276 | 16 | 274 | 686 | 1491 | 1904 | 3.01e-23 | 106 |
| MS.gene80703.t1 | AT1G49340 | 26.376 | 436 | 276 | 16 | 274 | 686 | 1491 | 1904 | 3.01e-23 | 106 |
Find 143 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGATGATCATGGGCCTTT+TGG | 0.206214 | 5.1:-17231194 | MS.gene80703:CDS |
| TGTTCAAATGGTATCGTTAA+TGG | 0.238019 | 5.1:-17232142 | MS.gene80703:CDS |
| AAGCTTAGACAGCTACTTTC+TGG | 0.244205 | 5.1:-17232734 | MS.gene80703:CDS |
| GCCAGTCCACTCGTTGAATT+TGG | 0.248295 | 5.1:+17236885 | None:intergenic |
| AAGGAAATAGACCTGAATTA+AGG | 0.256047 | 5.1:+17239117 | None:intergenic |
| CACATTGATGGCGCGCCGTT+TGG | 0.265882 | 5.1:-17238712 | MS.gene80703:CDS |
| TTTCCCAATTCCCTTAATTC+AGG | 0.290246 | 5.1:-17239128 | MS.gene80703:intron |
| TTACTGCACATATGAAATTC+TGG | 0.297436 | 5.1:-17233365 | MS.gene80703:CDS |
| TAGACCTGAATTAAGGGAAT+TGG | 0.308027 | 5.1:+17239124 | None:intergenic |
| ATGACCCTACATATGCAAAA+AGG | 0.322562 | 5.1:-17233390 | MS.gene80703:CDS |
| TGCACATTATTAACCTTTCC+AGG | 0.328164 | 5.1:+17237073 | None:intergenic |
| TCACGTTAACAGCTAAATAT+CGG | 0.339699 | 5.1:-17237499 | MS.gene80703:CDS |
| AATTTCTTCGTTGTGTTGAA+TGG | 0.348338 | 5.1:-17234896 | MS.gene80703:CDS |
| TTACTTGCTCCAATTGGTTC+AGG | 0.349986 | 5.1:-17233617 | MS.gene80703:CDS |
| AGCATTAAGCAATATTGAAT+TGG | 0.350124 | 5.1:-17233449 | MS.gene80703:CDS |
| GACCAATACCTCATCAAAAT+AGG | 0.353005 | 5.1:+17232694 | None:intergenic |
| CCATACAAGGTTCTAGCAAC+TGG | 0.356646 | 5.1:-17232078 | MS.gene80703:CDS |
| CCAATGATATTGTTATTGTC+TGG | 0.358804 | 5.1:-17235840 | MS.gene80703:CDS |
| ATTTAAACGGTGGCAGAGTT+TGG | 0.367837 | 5.1:-17232843 | MS.gene80703:CDS |
| GGAAGCAAAAGCTTAGGCTT+TGG | 0.380644 | 5.1:-17237135 | MS.gene80703:CDS |
| TCGCCTCACATTCAAAACTA+TGG | 0.381640 | 5.1:-17236858 | MS.gene80703:CDS |
| ATCACATATATACTTGGTAT+TGG | 0.386539 | 5.1:-17231116 | MS.gene80703:CDS |
| TCTCATGGTGAAGGATTGAT+TGG | 0.388746 | 5.1:-17237205 | MS.gene80703:CDS |
| GAAGCAAAAGCTTAGGCTTT+GGG | 0.388788 | 5.1:-17237134 | MS.gene80703:CDS |
| TTAGGTCCCTAGGCATGAAC+GGG | 0.395425 | 5.1:-17236954 | MS.gene80703:intron |
| TCCAATTGGTTCAGGCTCTT+CGG | 0.397784 | 5.1:-17233609 | MS.gene80703:CDS |
| ATCCCAGTGATGAGCACATC+TGG | 0.403063 | 5.1:+17232489 | None:intergenic |
| TACTTTCTCTCATTTGAGCT+TGG | 0.405483 | 5.1:+17235724 | None:intergenic |
| CCCTACCTGTGCTAATGAAC+GGG | 0.416972 | 5.1:+17232023 | None:intergenic |
| AGGAAATAGACCTGAATTAA+GGG | 0.417957 | 5.1:+17239118 | None:intergenic |
| TTCTTTGATGTCTGAGAAGA+GGG | 0.418191 | 5.1:-17234928 | MS.gene80703:CDS |
| AGACCTGAATTAAGGGAATT+GGG | 0.427233 | 5.1:+17239125 | None:intergenic |
| TTCCGCATCGAACGCCTTGA+AGG | 0.429980 | 5.1:-17239161 | MS.gene80703:CDS |
| CCAGTTGCTAGAACCTTGTA+TGG | 0.430909 | 5.1:+17232078 | None:intergenic |
| ACACCAGATGTGCTCATCAC+TGG | 0.432555 | 5.1:-17232492 | MS.gene80703:CDS |
| GAAACAAGCACTAGAATTGA+TGG | 0.437691 | 5.1:-17234356 | MS.gene80703:CDS |
| GAAAGGGTAAATTGCCTTCA+AGG | 0.440046 | 5.1:+17239147 | None:intergenic |
| ATATCATTGGTCGAAGCTAT+AGG | 0.441914 | 5.1:+17235853 | None:intergenic |
| AATTGGCAAGCTTTCTTCGC+TGG | 0.446366 | 5.1:-17233432 | MS.gene80703:CDS |
| GAGTGTGCGTTGCACATTGA+TGG | 0.450351 | 5.1:-17238724 | MS.gene80703:CDS |
| TCAATGTTACTTGCTCCAAT+TGG | 0.451060 | 5.1:-17233623 | MS.gene80703:CDS |
| CCAAAAGGCCCATGATCATC+AGG | 0.453310 | 5.1:+17231194 | None:intergenic |
| CCACGGGACCCTCGTATTGT+TGG | 0.464547 | 5.1:-17237532 | MS.gene80703:CDS |
| CTTGTTGTAGAAAATGATGA+TGG | 0.464644 | 5.1:-17238766 | MS.gene80703:intron |
| CCAGACAATAACAATATCAT+TGG | 0.466559 | 5.1:+17235840 | None:intergenic |
| ACCGAAGAGCCTGAACCAAT+TGG | 0.466842 | 5.1:+17233608 | None:intergenic |
| CAATGATATTGTTATTGTCT+GGG | 0.467655 | 5.1:-17235839 | MS.gene80703:CDS |
| CCCTAACAATTTGACATGAC+TGG | 0.469338 | 5.1:-17239233 | None:intergenic |
| GCAGGAATACCAACTGGTCC+TGG | 0.471798 | 5.1:+17232352 | None:intergenic |
| TATAAACGTTTCAAGACAGT+TGG | 0.477924 | 5.1:+17231163 | None:intergenic |
| GGACTTTGAGTGGAGATGAT+AGG | 0.478943 | 5.1:-17234974 | MS.gene80703:CDS |
| CTGGTGAAGGTTGGAGTCCA+CGG | 0.480995 | 5.1:-17237549 | MS.gene80703:intron |
| TGGGATCTTTCTCATGGTGA+AGG | 0.482025 | 5.1:-17237214 | MS.gene80703:CDS |
| TCTCCACTCAAAGTCCTTGT+TGG | 0.482283 | 5.1:+17234981 | None:intergenic |
| GCCAAATTCAACGAGTGGAC+TGG | 0.484095 | 5.1:-17236886 | MS.gene80703:CDS |
| CACGTTAACAGCTAAATATC+GGG | 0.491737 | 5.1:-17237498 | MS.gene80703:CDS |
| CAGGTTTGGGATCTTTCTCA+TGG | 0.498015 | 5.1:-17237220 | MS.gene80703:CDS |
| CACCAGATGTGCTCATCACT+GGG | 0.498800 | 5.1:-17232491 | MS.gene80703:CDS |
| ACCAAGTATATATGTGATAA+CGG | 0.501900 | 5.1:+17231121 | None:intergenic |
| GACACCACGGGTTAAACTCC+TGG | 0.502225 | 5.1:+17235765 | None:intergenic |
| TGTGTCCTCATTAGGTCCCT+AGG | 0.503314 | 5.1:-17236964 | MS.gene80703:intron |
| ACCTTTCCAGGTGTAGAAGT+AGG | 0.504443 | 5.1:+17237085 | None:intergenic |
| TTTAACTGTTTATGCTCAGA+GGG | 0.508499 | 5.1:+17235793 | None:intergenic |
| CCTTTCCAGGTGTAGAAGTA+GGG | 0.509565 | 5.1:+17237086 | None:intergenic |
| ATACTTCAATATTCTCTGAA+TGG | 0.509593 | 5.1:+17235007 | None:intergenic |
| AAGATGATAAAACCTTGTTC+TGG | 0.511758 | 5.1:+17238681 | None:intergenic |
| TCCATCCCGTTCATTAGCAC+AGG | 0.513341 | 5.1:-17232028 | MS.gene80703:intron |
| ATAAACAGTTAAAGCTGGCC+AGG | 0.513701 | 5.1:-17235783 | MS.gene80703:CDS |
| CGTTCGATGCGGAAAGTGAC+GGG | 0.517013 | 5.1:+17239170 | None:intergenic |
| AAGCTTTCTTCGCTGGTATG+TGG | 0.517061 | 5.1:-17233425 | MS.gene80703:CDS |
| GGTGCAAACGGAGAGGAAGA+TGG | 0.517256 | 5.1:-17232866 | MS.gene80703:CDS |
| CTAGCAACTGGGCAAGATGA+AGG | 0.518120 | 5.1:-17232066 | MS.gene80703:CDS |
| CAAAACTATGGAGAAAATCA+AGG | 0.518753 | 5.1:-17236846 | MS.gene80703:CDS |
| TGGTGAAGGTTGGAGTCCAC+GGG | 0.519827 | 5.1:-17237548 | MS.gene80703:intron |
| CCACTCAAAGTCCTTGTTGG+TGG | 0.523782 | 5.1:+17234984 | None:intergenic |
| CAAAAGCTTAGGCTTTGGGC+AGG | 0.524104 | 5.1:-17237130 | MS.gene80703:CDS |
| TTAAATATTGATGACTCTGA+GGG | 0.524865 | 5.1:+17232462 | None:intergenic |
| CAGATGGGAGCTGGTGCAAA+CGG | 0.525919 | 5.1:-17232878 | MS.gene80703:CDS |
| TCCGTTATCACATATATACT+TGG | 0.530140 | 5.1:-17231122 | MS.gene80703:CDS |
| TGTTGAATGGAGTGATGTAC+AGG | 0.532745 | 5.1:-17234883 | MS.gene80703:intron |
| CCCTACTTCTACACCTGGAA+AGG | 0.534797 | 5.1:-17237086 | MS.gene80703:intron |
| CAGTTGGCTGTAATTCCAAA+AGG | 0.534886 | 5.1:+17231179 | None:intergenic |
| TTTCTTTGATGTCTGAGAAG+AGG | 0.535885 | 5.1:-17234929 | MS.gene80703:CDS |
| ATGATAAAACCTTGTTCTGG+TGG | 0.536198 | 5.1:+17238684 | None:intergenic |
| GATTGACGTTTGTGATGCAC+TGG | 0.539342 | 5.1:-17234320 | MS.gene80703:CDS |
| CCAAAATCTCAGATGGGAGC+TGG | 0.541918 | 5.1:-17232887 | MS.gene80703:intron |
| CACTAGAATTGATGGGCAAG+TGG | 0.544415 | 5.1:-17234348 | MS.gene80703:CDS |
| GTTCAATCACTAGAGATGTC+AGG | 0.551302 | 5.1:-17232790 | MS.gene80703:CDS |
| ATTAGGTCCCTAGGCATGAA+CGG | 0.552317 | 5.1:-17236955 | MS.gene80703:intron |
| TCTGCATTTAACTCCATACA+AGG | 0.553089 | 5.1:-17232091 | MS.gene80703:CDS |
| GGTGTCAGAGGTGATCGTAT+TGG | 0.554165 | 5.1:+17232510 | None:intergenic |
| GTTCTGGTGGGAAGTCCAAA+CGG | 0.556275 | 5.1:+17238697 | None:intergenic |
| GCGTTCGATGCGGAAAGTGA+CGG | 0.556749 | 5.1:+17239169 | None:intergenic |
| CATGGTGAAGGATTGATTGG+AGG | 0.557450 | 5.1:-17237202 | MS.gene80703:CDS |
| TGAATTAAGGGAATTGGGAA+AGG | 0.557858 | 5.1:+17239130 | None:intergenic |
| TTTAAATATTGATGACTCTG+AGG | 0.558343 | 5.1:+17232461 | None:intergenic |
| GAGAGGAAGATGGATTTAAA+CGG | 0.558804 | 5.1:-17232856 | MS.gene80703:CDS |
| ATATACTTGGTATTGGAGAC+AGG | 0.562402 | 5.1:-17231109 | MS.gene80703:intron |
| AGACTGGGAAGCAAAAGCTT+AGG | 0.563123 | 5.1:-17237141 | MS.gene80703:CDS |
| ACCCTACCTGTGCTAATGAA+CGG | 0.563767 | 5.1:+17232022 | None:intergenic |
| TGAGCATAAACAGTTAAAGC+TGG | 0.564717 | 5.1:-17235788 | MS.gene80703:CDS |
| TCTGGAGGAGTATATGATGA+AGG | 0.572902 | 5.1:-17233347 | MS.gene80703:intron |
| TGGGCAAGATGAAGGCATGT+TGG | 0.574569 | 5.1:-17232058 | MS.gene80703:CDS |
| GAATTAAGGGAATTGGGAAA+GGG | 0.579406 | 5.1:+17239131 | None:intergenic |
| GTTGTTAAAGAGAAGAATTG+TGG | 0.583980 | 5.1:+17237177 | None:intergenic |
| TGCCTTCAAGGCGTTCGATG+CGG | 0.584785 | 5.1:+17239159 | None:intergenic |
| GGTCCCTAGGCATGAACGGG+GGG | 0.585456 | 5.1:-17236951 | MS.gene80703:CDS |
| TATTGTCTGGGACCCAGAAG+TGG | 0.588125 | 5.1:-17235827 | MS.gene80703:CDS |
| TCTTCTTCTGTGTATTACCT+CGG | 0.588947 | 5.1:+17232762 | None:intergenic |
| CTTTAACTGTTTATGCTCAG+AGG | 0.591757 | 5.1:+17235792 | None:intergenic |
| TGATAAAACCTTGTTCTGGT+GGG | 0.593117 | 5.1:+17238685 | None:intergenic |
| ATCTCTGTCTATGACACCAC+GGG | 0.595270 | 5.1:+17235753 | None:intergenic |
| TGGAAGTGCTCATTTGTATG+TGG | 0.595283 | 5.1:-17236804 | MS.gene80703:CDS |
| ACTAGAATTGATGGGCAAGT+GGG | 0.598933 | 5.1:-17234347 | MS.gene80703:CDS |
| TTGGACTTCCCACCAGAACA+AGG | 0.599322 | 5.1:-17238693 | MS.gene80703:intron |
| TTGGTCGAAGCTATAGGAGA+TGG | 0.600468 | 5.1:+17235859 | None:intergenic |
| CCACCAACAAGGACTTTGAG+TGG | 0.604075 | 5.1:-17234984 | MS.gene80703:CDS |
| GAGATGATAGGCAACTCTTG+TGG | 0.604236 | 5.1:-17234962 | MS.gene80703:CDS |
| CGATCTTCGCCAGGACCAGT+TGG | 0.607072 | 5.1:-17232361 | MS.gene80703:intron |
| ACATTCCCTACTTCTACACC+TGG | 0.610568 | 5.1:-17237091 | MS.gene80703:CDS |
| CATACAAGGTTCTAGCAACT+GGG | 0.611041 | 5.1:-17232077 | MS.gene80703:CDS |
| AAACAAGCACTAGAATTGAT+GGG | 0.614052 | 5.1:-17234355 | MS.gene80703:CDS |
| TGGGCAGGAAAAGAAGCAGA+TGG | 0.617410 | 5.1:-17237115 | MS.gene80703:CDS |
| ACCTGTGCTAATGAACGGGA+TGG | 0.618260 | 5.1:+17232027 | None:intergenic |
| AGAGAAAGAGACATCTTACT+CGG | 0.628563 | 5.1:+17230575 | None:intergenic |
| ATTGTCTGGGACCCAGAAGT+GGG | 0.631740 | 5.1:-17235826 | MS.gene80703:CDS |
| TGGAACTGCAGAGTTATATG+TGG | 0.636425 | 5.1:-17238746 | MS.gene80703:CDS |
| AGGTCCCTAGGCATGAACGG+GGG | 0.637589 | 5.1:-17236952 | MS.gene80703:CDS |
| GAGCTCATTCCAACAATACG+AGG | 0.645146 | 5.1:+17237523 | None:intergenic |
| GCGAGGCCAAATTCAACGAG+TGG | 0.647883 | 5.1:-17236891 | MS.gene80703:CDS |
| GAACACTCACTGCATAAGCA+CGG | 0.655020 | 5.1:+17233671 | None:intergenic |
| TAGGTCCCTAGGCATGAACG+GGG | 0.661850 | 5.1:-17236953 | MS.gene80703:CDS |
| ATGAGCACATCTGGTGTCAG+AGG | 0.665902 | 5.1:+17232498 | None:intergenic |
| CTGCACATATGAAATTCTGG+AGG | 0.666533 | 5.1:-17233362 | MS.gene80703:CDS |
| ACCCCATGCACATACCACGC+TGG | 0.667482 | 5.1:+17233545 | None:intergenic |
| GGGAGCTGGTGCAAACGGAG+AGG | 0.679178 | 5.1:-17232873 | MS.gene80703:CDS |
| AGGAAGATGGATTTAAACGG+TGG | 0.680685 | 5.1:-17232853 | MS.gene80703:CDS |
| GATCTCTGTCTATGACACCA+CGG | 0.681065 | 5.1:+17235752 | None:intergenic |
| CCAACAATACGAGGGTCCCG+TGG | 0.688862 | 5.1:+17237532 | None:intergenic |
| TATTGAAGTATCCACCAACA+AGG | 0.699350 | 5.1:-17234995 | MS.gene80703:CDS |
| AGAGATGTCAGGAATGTCCG+AGG | 0.705449 | 5.1:-17232779 | MS.gene80703:CDS |
| AGCTCATTCCAACAATACGA+GGG | 0.708520 | 5.1:+17237524 | None:intergenic |
| CTGGCCAGGAGTTTAACCCG+TGG | 0.725449 | 5.1:-17235769 | MS.gene80703:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 17230571 | 17239240 | 17230571 | ID=MS.gene80703 |
| chr5.1 | mRNA | 17230571 | 17239240 | 17230571 | ID=MS.gene80703.t1;Parent=MS.gene80703 |
| chr5.1 | exon | 17239129 | 17239240 | 17239129 | ID=MS.gene80703.t1.exon1;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17239129 | 17239240 | 17239129 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17238694 | 17238778 | 17238694 | ID=MS.gene80703.t1.exon2;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17238694 | 17238778 | 17238694 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17237466 | 17237562 | 17237466 | ID=MS.gene80703.t1.exon3;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17237466 | 17237562 | 17237466 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17237087 | 17237239 | 17237087 | ID=MS.gene80703.t1.exon4;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17237087 | 17237239 | 17237087 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17236763 | 17236972 | 17236763 | ID=MS.gene80703.t1.exon5;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17236763 | 17236972 | 17236763 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17235727 | 17235905 | 17235727 | ID=MS.gene80703.t1.exon6;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17235727 | 17235905 | 17235727 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17234884 | 17235031 | 17234884 | ID=MS.gene80703.t1.exon7;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17234884 | 17235031 | 17234884 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17234288 | 17234383 | 17234288 | ID=MS.gene80703.t1.exon8;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17234288 | 17234383 | 17234288 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17233560 | 17233695 | 17233560 | ID=MS.gene80703.t1.exon9;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17233560 | 17233695 | 17233560 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17233348 | 17233469 | 17233348 | ID=MS.gene80703.t1.exon10;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17233348 | 17233469 | 17233348 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17232703 | 17232897 | 17232703 | ID=MS.gene80703.t1.exon11;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17232703 | 17232897 | 17232703 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17232362 | 17232532 | 17232362 | ID=MS.gene80703.t1.exon12;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17232362 | 17232532 | 17232362 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17232029 | 17232166 | 17232029 | ID=MS.gene80703.t1.exon13;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17232029 | 17232166 | 17232029 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17231110 | 17231264 | 17231110 | ID=MS.gene80703.t1.exon14;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17231110 | 17231264 | 17231110 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| chr5.1 | exon | 17230571 | 17230730 | 17230571 | ID=MS.gene80703.t1.exon15;Parent=MS.gene80703.t1 |
| chr5.1 | CDS | 17230571 | 17230730 | 17230571 | ID=cds.MS.gene80703.t1;Parent=MS.gene80703.t1 |
| Gene Sequence |
| Protein sequence |
