Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051543.t1 | RHN77073.1 | 88.4 | 1064 | 73 | 2 | 1 | 1014 | 1 | 1064 | 0.00E+00 | 1823.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051543.t1 | Q7Y219 | 36.6 | 1027 | 558 | 23 | 18 | 1015 | 8 | 970 | 4.9e-148 | 526.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051543.t1 | A0A396JLD9 | 88.4 | 1064 | 73 | 2 | 1 | 1014 | 1 | 1064 | 0.0e+00 | 1823.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene051543 | 0.813275 | 2.78E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene051543 | 0.837513 | 4.97E-57 | -1.69E-46 |
| MS.gene051543 | MS.gene056050 | 0.813786 | 2.15E-51 | -1.69E-46 |
| MS.gene051543 | MS.gene056973 | 0.808824 | 2.56E-50 | -1.69E-46 |
| MS.gene051543 | MS.gene058010 | 0.815706 | 8.06E-52 | -1.69E-46 |
| MS.gene051543 | MS.gene058427 | 0.826358 | 2.83E-54 | -1.69E-46 |
| MS.gene051543 | MS.gene058979 | 0.823596 | 1.27E-53 | -1.69E-46 |
| MS.gene051543 | MS.gene06052 | 0.800469 | 1.42E-48 | -1.69E-46 |
| MS.gene051543 | MS.gene062156 | 0.811801 | 5.84E-51 | -1.69E-46 |
| MS.gene051543 | MS.gene06269 | 0.801725 | 7.86E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene063209 | 0.84412 | 9.20E-59 | -1.69E-46 |
| MS.gene051543 | MS.gene06372 | 0.808808 | 2.58E-50 | -1.69E-46 |
| MS.gene051543 | MS.gene065039 | 0.812326 | 4.48E-51 | -1.69E-46 |
| MS.gene051543 | MS.gene066319 | 0.800909 | 1.16E-48 | -1.69E-46 |
| MS.gene051543 | MS.gene066320 | 0.821315 | 4.31E-53 | -1.69E-46 |
| MS.gene051543 | MS.gene066321 | 0.81396 | 1.96E-51 | -1.69E-46 |
| MS.gene051543 | MS.gene066335 | 0.803592 | 3.24E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene067173 | 0.81702 | 4.09E-52 | -1.69E-46 |
| MS.gene051543 | MS.gene068526 | 0.804451 | 2.15E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene068924 | 0.802918 | 4.47E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene070818 | 0.810547 | 1.09E-50 | -1.69E-46 |
| MS.gene051543 | MS.gene073853 | 0.801894 | 7.26E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene074604 | 0.813635 | 2.32E-51 | -1.69E-46 |
| MS.gene051543 | MS.gene07510 | 0.804412 | 2.19E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene20809 | 0.812538 | 4.03E-51 | -1.69E-46 |
| MS.gene051543 | MS.gene24067 | 0.812044 | 5.17E-51 | -1.69E-46 |
| MS.gene051543 | MS.gene31306 | 0.82046 | 6.78E-53 | -1.69E-46 |
| MS.gene051543 | MS.gene31904 | 0.83471 | 2.56E-56 | -1.69E-46 |
| MS.gene051543 | MS.gene35858 | 0.816876 | 4.41E-52 | -1.69E-46 |
| MS.gene051543 | MS.gene36440 | 0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene051543 | MS.gene39253 | 0.828647 | 8.00E-55 | -1.69E-46 |
| MS.gene051543 | MS.gene40068 | 0.835811 | 1.35E-56 | -1.69E-46 |
| MS.gene051543 | MS.gene40079 | 0.824202 | 9.17E-54 | -1.69E-46 |
| MS.gene051543 | MS.gene40157 | 0.816267 | 6.04E-52 | -1.69E-46 |
| MS.gene051543 | MS.gene40518 | 0.810072 | 1.38E-50 | -1.69E-46 |
| MS.gene051543 | MS.gene41298 | 0.807364 | 5.24E-50 | -1.69E-46 |
| MS.gene051543 | MS.gene43430 | 0.820037 | 8.48E-53 | -1.69E-46 |
| MS.gene051543 | MS.gene45732 | 0.803497 | 3.39E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene50833 | 0.811775 | 5.92E-51 | -1.69E-46 |
| MS.gene051543 | MS.gene51789 | 0.80789 | 4.05E-50 | -1.69E-46 |
| MS.gene051543 | MS.gene56421 | 0.807651 | 4.55E-50 | -1.69E-46 |
| MS.gene051543 | MS.gene57360 | 0.800442 | 1.44E-48 | -1.69E-46 |
| MS.gene051543 | MS.gene58284 | 0.816779 | 4.64E-52 | -1.69E-46 |
| MS.gene051543 | MS.gene58571 | 0.803474 | 3.43E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene60171 | 0.826571 | 2.52E-54 | -1.69E-46 |
| MS.gene051543 | MS.gene60827 | 0.804878 | 1.75E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene65479 | 0.81843 | 1.97E-52 | -1.69E-46 |
| MS.gene051543 | MS.gene67388 | 0.821456 | 4.00E-53 | -1.69E-46 |
| MS.gene051543 | MS.gene67662 | 0.810485 | 1.13E-50 | -1.69E-46 |
| MS.gene051543 | MS.gene67893 | 0.80613 | 9.55E-50 | -1.69E-46 |
| MS.gene051543 | MS.gene71597 | 0.828734 | 7.63E-55 | -1.69E-46 |
| MS.gene051543 | MS.gene72400 | 0.805785 | 1.13E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene74904 | 0.804704 | 1.90E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene77356 | 0.836266 | 1.04E-56 | -1.69E-46 |
| MS.gene051543 | MS.gene80703 | 0.800937 | 1.14E-48 | -1.69E-46 |
| MS.gene051543 | MS.gene80704 | 0.809841 | 1.55E-50 | -1.69E-46 |
| MS.gene051543 | MS.gene81047 | 0.817812 | 2.72E-52 | -1.69E-46 |
| MS.gene051543 | MS.gene84454 | 0.806886 | 6.61E-50 | -1.69E-46 |
| MS.gene051543 | MS.gene86140 | 0.817314 | 3.52E-52 | -1.69E-46 |
| MS.gene051543 | MS.gene86826 | 0.81023 | 1.28E-50 | -1.69E-46 |
| MS.gene051543 | MS.gene89104 | 0.815745 | 7.90E-52 | -1.69E-46 |
| MS.gene051543 | MS.gene90585 | 0.800858 | 1.18E-48 | -1.69E-46 |
| MS.gene051543 | MS.gene92340 | 0.804651 | 1.95E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene96191 | 0.809859 | 1.54E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051543.t1 | MTR_1g015120 | 87.030 | 1064 | 65 | 3 | 1 | 1014 | 1 | 1041 | 0.0 | 1845 |
| MS.gene051543.t1 | MTR_2g040970 | 34.945 | 1179 | 570 | 32 | 25 | 1015 | 19 | 1188 | 6.65e-174 | 540 |
| MS.gene051543.t1 | MTR_2g040970 | 34.945 | 1179 | 570 | 32 | 25 | 1015 | 19 | 1188 | 4.75e-173 | 540 |
| MS.gene051543.t1 | MTR_4g125670 | 35.481 | 1102 | 562 | 22 | 24 | 1015 | 9 | 1071 | 5.86e-173 | 534 |
| MS.gene051543.t1 | MTR_6g080430 | 38.835 | 206 | 121 | 3 | 44 | 246 | 78 | 281 | 1.09e-34 | 143 |
| MS.gene051543.t1 | MTR_6g080430 | 26.202 | 416 | 222 | 11 | 618 | 1011 | 514 | 866 | 1.92e-26 | 117 |
| MS.gene051543.t1 | MTR_8g106680 | 36.207 | 174 | 105 | 3 | 76 | 246 | 105 | 275 | 6.80e-27 | 118 |
| MS.gene051543.t1 | MTR_8g106680 | 24.882 | 422 | 221 | 14 | 618 | 1011 | 514 | 867 | 3.54e-24 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051543.t1 | AT5G26160 | 37.198 | 1035 | 541 | 27 | 18 | 1015 | 8 | 970 | 1.12e-173 | 533 |
| MS.gene051543.t1 | AT5G26160 | 37.198 | 1035 | 541 | 27 | 18 | 1015 | 8 | 970 | 1.12e-173 | 533 |
| MS.gene051543.t1 | AT5G26160 | 37.811 | 1005 | 524 | 26 | 18 | 993 | 8 | 940 | 2.57e-173 | 532 |
| MS.gene051543.t1 | AT5G20610 | 35.861 | 633 | 311 | 15 | 464 | 1014 | 544 | 1163 | 4.03e-94 | 324 |
| MS.gene051543.t1 | AT5G20610 | 40.063 | 317 | 153 | 6 | 26 | 320 | 13 | 314 | 2.79e-57 | 216 |
| MS.gene051543.t1 | AT1G42550 | 37.725 | 167 | 98 | 4 | 85 | 246 | 123 | 288 | 5.57e-27 | 119 |
| MS.gene051543.t1 | AT1G42550 | 24.679 | 312 | 159 | 11 | 552 | 826 | 460 | 732 | 1.58e-11 | 68.9 |
Find 204 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTGATATTGTTCAATT+TGG | 0.066579 | 1.3:+7081491 | None:intergenic |
| CTCAAGATCTTCAAGAATTT+TGG | 0.094286 | 1.3:+7082958 | None:intergenic |
| TCTGATTTATCTTTAATTAT+TGG | 0.172054 | 1.3:-7083037 | MS.gene051543:CDS |
| TGGCAGAAAGCGCAGTTATT+TGG | 0.193805 | 1.3:-7081978 | MS.gene051543:CDS |
| GAGATAGTAGAAGGCTTAAA+AGG | 0.200216 | 1.3:+7084537 | None:intergenic |
| GTACATAGATGTTCGGTTTA+TGG | 0.206716 | 1.3:-7084207 | MS.gene051543:CDS |
| GATATCTTGATTCAACAATT+TGG | 0.224059 | 1.3:+7081586 | None:intergenic |
| AATCTGTCTTCAAGTTAATA+AGG | 0.251956 | 1.3:+7083893 | None:intergenic |
| CATCCAAGGAGAACATAATT+TGG | 0.267826 | 1.3:-7082095 | MS.gene051543:CDS |
| CACTTAAGTAGTGTTCTTCT+TGG | 0.277300 | 1.3:+7083332 | None:intergenic |
| ACTGAAACTGATTCAAATAT+TGG | 0.283455 | 1.3:-7084621 | MS.gene051543:CDS |
| ATCCGACACAATATGCTTAA+TGG | 0.290782 | 1.3:+7082559 | None:intergenic |
| TAGTGGTAACCGACAAGTTT+GGG | 0.293001 | 1.3:-7081729 | MS.gene051543:CDS |
| AGAACCTGGTCTGGTGGATT+TGG | 0.298861 | 1.3:-7082878 | MS.gene051543:CDS |
| TTCACCAATCGAAGGTAATA+TGG | 0.300524 | 1.3:+7082823 | None:intergenic |
| CAATTTGGGAACATGATATC+AGG | 0.301647 | 1.3:+7081506 | None:intergenic |
| TGATTTATGCTTCTGTTGTT+GGG | 0.305019 | 1.3:-7084134 | MS.gene051543:CDS |
| TTGTGCGAGCCTCATCATTC+AGG | 0.308272 | 1.3:-7082720 | MS.gene051543:CDS |
| AGGTTGGTTGGAAAAGCTTT+AGG | 0.311083 | 1.3:-7084000 | MS.gene051543:CDS |
| TTGATTTATGCTTCTGTTGT+TGG | 0.316516 | 1.3:-7084135 | MS.gene051543:CDS |
| CACCGAGTTTAGAAGAGTTA+TGG | 0.322033 | 1.3:-7084059 | MS.gene051543:CDS |
| GTTAGTGAGGATCTGTTGAT+AGG | 0.325620 | 1.3:-7084462 | MS.gene051543:CDS |
| TAATGTGGATGAGATTATTA+AGG | 0.327179 | 1.3:-7083530 | MS.gene051543:CDS |
| ACTGGTTCATAATTTCTTAG+AGG | 0.327756 | 1.3:+7081914 | None:intergenic |
| GCTCTGATATTGTTCAATTT+GGG | 0.328775 | 1.3:+7081492 | None:intergenic |
| GGCAGAAAGCGCAGTTATTT+GGG | 0.332530 | 1.3:-7081977 | MS.gene051543:CDS |
| ACAAGAAATTGTCTTCAAAA+TGG | 0.335837 | 1.3:-7084437 | MS.gene051543:CDS |
| CACTGGATACCGTATGTTCT+AGG | 0.342638 | 1.3:-7083468 | MS.gene051543:CDS |
| AAGACTAACAAGGAAGCTTC+TGG | 0.343748 | 1.3:-7082533 | MS.gene051543:CDS |
| AATTGTCTTCAAAATGGAAT+TGG | 0.344941 | 1.3:-7084431 | MS.gene051543:CDS |
| TGTTTCCCAATGTCATGTTC+AGG | 0.348192 | 1.3:+7084108 | None:intergenic |
| TTATGGGGTGATAAAAGTTC+AGG | 0.358120 | 1.3:-7084042 | MS.gene051543:CDS |
| AAGGATGATTTAATGAGATT+TGG | 0.360201 | 1.3:-7083940 | MS.gene051543:CDS |
| CGGCGATCTTGATGGTTTGA+TGG | 0.364842 | 1.3:-7082164 | MS.gene051543:CDS |
| AATCCACCAGACCAGGTTCT+TGG | 0.366360 | 1.3:+7082881 | None:intergenic |
| TCTTCATCGGATATTTCAAT+TGG | 0.366592 | 1.3:+7082851 | None:intergenic |
| TGAGATTTGGTGCTAGTAAT+GGG | 0.369936 | 1.3:-7083927 | MS.gene051543:CDS |
| ACCGAGTTTAGAAGAGTTAT+GGG | 0.379141 | 1.3:-7084058 | MS.gene051543:CDS |
| AATGAAGCAGTGATGAATTC+TGG | 0.379585 | 1.3:-7083781 | MS.gene051543:CDS |
| TATGGTGGTCGTGTGGGGTC+TGG | 0.381978 | 1.3:-7084189 | MS.gene051543:CDS |
| AACTGAATCCTCAATCTTCA+TGG | 0.382045 | 1.3:+7083378 | None:intergenic |
| AATGCGAATGAGGAGGGATT+GGG | 0.384507 | 1.3:-7083103 | MS.gene051543:CDS |
| GAAAATGAGGCTCTAGCTTC+AGG | 0.387737 | 1.3:-7083145 | MS.gene051543:CDS |
| CAATGGTTGAGACTTGATTC+TGG | 0.388547 | 1.3:-7082121 | MS.gene051543:CDS |
| CCTTCGATTGGTGAAGGGCT+TGG | 0.388984 | 1.3:-7082815 | MS.gene051543:CDS |
| ATCAAGGAGATTCATCTTGC+CGG | 0.392859 | 1.3:-7081767 | MS.gene051543:CDS |
| CTTCATGTTCATTCGATTGA+GGG | 0.396628 | 1.3:-7084348 | MS.gene051543:CDS |
| AAAATTTGTTAAAACTTTCA+AGG | 0.399716 | 1.3:+7084401 | None:intergenic |
| AAGAGTTGACATAAATGAAA+TGG | 0.402011 | 1.3:-7081858 | MS.gene051543:CDS |
| GTGATAAAAGTTCAGGGAAA+TGG | 0.403771 | 1.3:-7084035 | MS.gene051543:CDS |
| TCAATCTTGTTAATAGTCAT+AGG | 0.404954 | 1.3:+7082268 | None:intergenic |
| TATAATGATGGGTTGGGAAA+TGG | 0.405336 | 1.3:-7082022 | MS.gene051543:CDS |
| CTTTGAGTTTCAACGGCGTT+AGG | 0.406750 | 1.3:-7084320 | MS.gene051543:CDS |
| GCTAGATTAAATGTTAGTTT+CGG | 0.410989 | 1.3:-7083976 | MS.gene051543:CDS |
| ACTGCGTCTCAGCAACAATC+CGG | 0.412720 | 1.3:-7081704 | MS.gene051543:CDS |
| TTTAAGACAGTTTGAAAATG+AGG | 0.413809 | 1.3:-7083158 | MS.gene051543:CDS |
| TGATAAATTAATGCAACAAT+GGG | 0.414227 | 1.3:-7082933 | MS.gene051543:CDS |
| ATCACAGAATTATATAATGA+TGG | 0.420774 | 1.3:-7082034 | MS.gene051543:CDS |
| ATAGTGGTAACCGACAAGTT+TGG | 0.426492 | 1.3:-7081730 | MS.gene051543:CDS |
| TAGGAATGTGAATGTGGATA+TGG | 0.432336 | 1.3:-7083449 | MS.gene051543:CDS |
| GACCTGTCCGTCAAGGGTAT+TGG | 0.432762 | 1.3:-7084259 | MS.gene051543:CDS |
| TAATGCGAATGAGGAGGGAT+TGG | 0.434699 | 1.3:-7083104 | MS.gene051543:CDS |
| AACTTTGGTACATAGATGTT+CGG | 0.436998 | 1.3:-7084214 | MS.gene051543:CDS |
| GGTTAAGTGTGCATTGGAAA+AGG | 0.437103 | 1.3:-7084299 | MS.gene051543:CDS |
| CTAAAACAAGCAACATTGTC+GGG | 0.437682 | 1.3:+7083862 | None:intergenic |
| ACCAGCATTGGAACTCCAAC+TGG | 0.438461 | 1.3:+7081896 | None:intergenic |
| TTCTTAGAGGATCTCTGTGC+TGG | 0.444411 | 1.3:+7081927 | None:intergenic |
| ATGAGATTTGGTGCTAGTAA+TGG | 0.445911 | 1.3:-7083928 | MS.gene051543:CDS |
| GAAATCAACGGCGATCTTGA+TGG | 0.447578 | 1.3:-7082172 | MS.gene051543:CDS |
| CCTTCATGTTCATTCGATTG+AGG | 0.448294 | 1.3:-7084349 | MS.gene051543:CDS |
| TTCTACCCCTTGTTCACTGA+TGG | 0.449718 | 1.3:+7083627 | None:intergenic |
| TCGTTCGAATTTGATCAAAC+AGG | 0.452174 | 1.3:-7083589 | MS.gene051543:CDS |
| ACTGATAAGGTGAAAATAGA+TGG | 0.459395 | 1.3:-7081998 | MS.gene051543:CDS |
| TAGAGACTAATGCACACATT+AGG | 0.459516 | 1.3:-7081532 | MS.gene051543:CDS |
| TGCGGAGTTTGATGAAACTT+TGG | 0.460701 | 1.3:-7084229 | MS.gene051543:CDS |
| TCTGTTTCAGGAAGGGATCA+TGG | 0.464848 | 1.3:-7082378 | MS.gene051543:intron |
| TCGGTTTATGGTGGTCGTGT+GGG | 0.467433 | 1.3:-7084195 | MS.gene051543:CDS |
| AATTCTCCAAGAACCTGGTC+TGG | 0.470655 | 1.3:-7082887 | MS.gene051543:CDS |
| AGATAGTAGAAGGCTTAAAA+GGG | 0.471114 | 1.3:+7084538 | None:intergenic |
| GAATTATATAATGATGGGTT+GGG | 0.472771 | 1.3:-7082028 | MS.gene051543:CDS |
| TTAGTGAGGATCTGTTGATA+GGG | 0.474296 | 1.3:-7084461 | MS.gene051543:CDS |
| TTTCTTAAAGACGCTGGCAT+TGG | 0.474864 | 1.3:-7083239 | MS.gene051543:CDS |
| TTTCGGTTATCAAGTAATGA+AGG | 0.475758 | 1.3:-7083959 | MS.gene051543:CDS |
| AGAATTATATAATGATGGGT+TGG | 0.478189 | 1.3:-7082029 | MS.gene051543:CDS |
| TGTCGGTAACGTTGGATCAA+TGG | 0.480373 | 1.3:-7082138 | MS.gene051543:CDS |
| AGATCCTCACTAACAAATCT+CGG | 0.484333 | 1.3:+7084471 | None:intergenic |
| GTTCCAAATTATGTTCTCCT+TGG | 0.485781 | 1.3:+7082092 | None:intergenic |
| AATTATTGGTGCCGTGGAAG+AGG | 0.486325 | 1.3:-7083023 | MS.gene051543:CDS |
| GTCCAATACCCTTGACGGAC+AGG | 0.486403 | 1.3:+7084257 | None:intergenic |
| TTCGGTTTATGGTGGTCGTG+TGG | 0.488293 | 1.3:-7084196 | MS.gene051543:CDS |
| TTGAAAATTCTCCAAGAACC+TGG | 0.492352 | 1.3:-7082892 | MS.gene051543:CDS |
| CTGATAAATTAATGCAACAA+TGG | 0.498084 | 1.3:-7082934 | MS.gene051543:CDS |
| GATTTATGCTTCTGTTGTTG+GGG | 0.498131 | 1.3:-7084133 | MS.gene051543:CDS |
| AACAGATAAAGACAAATGCT+TGG | 0.500593 | 1.3:-7082317 | MS.gene051543:CDS |
| AGCATAAATCAAGAATCGCT+TGG | 0.502217 | 1.3:+7084146 | None:intergenic |
| TCAATCTAGATTCAAAATCA+AGG | 0.504472 | 1.3:-7081783 | MS.gene051543:CDS |
| ACCAGTTGGAGTTCCAATGC+TGG | 0.507271 | 1.3:-7081897 | MS.gene051543:CDS |
| GGGAACCTGAACATGACATT+GGG | 0.508776 | 1.3:-7084113 | MS.gene051543:CDS |
| GCCTGAGCTAAAACCAGCAT+TGG | 0.509744 | 1.3:+7081884 | None:intergenic |
| ATTAAGCAAAGCTCTATACT+TGG | 0.509999 | 1.3:-7084568 | MS.gene051543:CDS |
| AACAATGGGGTTTAGATGAG+AGG | 0.511115 | 1.3:-7082919 | MS.gene051543:CDS |
| GTCAAGAAACTCTGACGTCT+CGG | 0.513109 | 1.3:+7083354 | None:intergenic |
| TAATTCAGCACGGGCAGACT+CGG | 0.515926 | 1.3:-7083698 | MS.gene051543:CDS |
| CCCCATAACTCTTCTAAACT+CGG | 0.519304 | 1.3:+7084057 | None:intergenic |
| ATCAATCATTAATGCAGAGA+AGG | 0.520043 | 1.3:-7082985 | MS.gene051543:CDS |
| AAATTTGTTAAAACTTTCAA+GGG | 0.523046 | 1.3:+7084402 | None:intergenic |
| ACGCAGTGCCCCAAACTTGT+CGG | 0.527140 | 1.3:+7081720 | None:intergenic |
| ATGCCTTTGCTAGATATCAC+TGG | 0.527711 | 1.3:-7082587 | MS.gene051543:CDS |
| GTTGGGAAATGGCACTGATA+AGG | 0.529156 | 1.3:-7082011 | MS.gene051543:CDS |
| AGCAACAATCCGGGTTGCGT+TGG | 0.533759 | 1.3:-7081694 | MS.gene051543:CDS |
| TTATCTGTTAAATAACTACA+TGG | 0.535658 | 1.3:+7082331 | None:intergenic |
| ATAGGGATGTCGTAAAGCTT+CGG | 0.535896 | 1.3:-7083831 | MS.gene051543:CDS |
| GACAGTATTACACATGCCAC+TGG | 0.538186 | 1.3:+7081664 | None:intergenic |
| TCACAGAATTATATAATGAT+GGG | 0.538575 | 1.3:-7082033 | MS.gene051543:CDS |
| ACATGACATTGGGAAACATC+AGG | 0.539471 | 1.3:-7084103 | MS.gene051543:CDS |
| ACTTCCAAATCCACCAGACC+AGG | 0.539639 | 1.3:+7082874 | None:intergenic |
| ATATTACCTTCGATTGGTGA+AGG | 0.540843 | 1.3:-7082821 | MS.gene051543:CDS |
| GCAGTGATGAATTCTGGCTC+AGG | 0.540966 | 1.3:-7083775 | MS.gene051543:CDS |
| CCATCCATATTACCTTCGAT+TGG | 0.541584 | 1.3:-7082827 | MS.gene051543:CDS |
| TAACGCAAGATGTGATTCAC+TGG | 0.542746 | 1.3:-7083485 | MS.gene051543:CDS |
| CTAAGAAATTATGAACCAGT+TGG | 0.543091 | 1.3:-7081911 | MS.gene051543:CDS |
| TGTCTTAAAAGCTTCTCTCT+AGG | 0.544252 | 1.3:+7083172 | None:intergenic |
| GATCCGTCCAATACCCTTGA+CGG | 0.544712 | 1.3:+7084252 | None:intergenic |
| GATCCTCACTAACAAATCTC+GGG | 0.545482 | 1.3:+7084472 | None:intergenic |
| TCTACCATCCATGAAGATTG+AGG | 0.546459 | 1.3:-7083386 | MS.gene051543:CDS |
| CCTTTCATACTCCTCTTCCA+CGG | 0.547114 | 1.3:+7083012 | None:intergenic |
| GAGTATCAAAATAAAGATGT+TGG | 0.547317 | 1.3:-7084648 | MS.gene051543:CDS |
| TGTTGAATCAAGATATCTTG+TGG | 0.547330 | 1.3:-7081580 | MS.gene051543:CDS |
| TCATTTCGCTCAAGCTGTGA+CGG | 0.549382 | 1.3:-7083208 | MS.gene051543:CDS |
| TCTCCAAGAACCTGGTCTGG+TGG | 0.549400 | 1.3:-7082884 | MS.gene051543:CDS |
| ACTAAAACAAGCAACATTGT+CGG | 0.549458 | 1.3:+7083861 | None:intergenic |
| GATGGATCTGTCGGTAACGT+TGG | 0.550521 | 1.3:-7082146 | MS.gene051543:CDS |
| TACACTTGAACATAACTATG+AGG | 0.551566 | 1.3:-7083074 | MS.gene051543:CDS |
| AAGCTTCTCTCTAGGAGACA+TGG | 0.552937 | 1.3:+7083180 | None:intergenic |
| ATTCTTAGCATTTCTGAAGA+GGG | 0.553950 | 1.3:+7082742 | None:intergenic |
| GTCTAGCATGTCAAATGAAG+AGG | 0.553980 | 1.3:-7082215 | MS.gene051543:CDS |
| GCGTTAGGTTAAGTGTGCAT+TGG | 0.554281 | 1.3:-7084305 | MS.gene051543:CDS |
| TTGCGTTGGTTGCTTTCCAG+TGG | 0.555258 | 1.3:-7081680 | MS.gene051543:CDS |
| CCTATATCAAAAGCTTGATG+AGG | 0.555755 | 1.3:-7083731 | MS.gene051543:CDS |
| CTATATCAAAAGCTTGATGA+GGG | 0.556939 | 1.3:-7083730 | MS.gene051543:CDS |
| CGGTTTATGGTGGTCGTGTG+GGG | 0.557642 | 1.3:-7084194 | MS.gene051543:CDS |
| CTTGATTCTGGCATCATCCA+AGG | 0.557881 | 1.3:-7082109 | MS.gene051543:CDS |
| AATTCTTAGCATTTCTGAAG+AGG | 0.558323 | 1.3:+7082741 | None:intergenic |
| GGACTGCCTTTGAGTTTCAA+CGG | 0.559794 | 1.3:-7084327 | MS.gene051543:CDS |
| TTAGCATTTCTGAAGAGGGA+AGG | 0.560033 | 1.3:+7082746 | None:intergenic |
| CCGTGGAAGAGGAGTATGAA+AGG | 0.561065 | 1.3:-7083012 | MS.gene051543:CDS |
| CTGCGTCTCAGCAACAATCC+GGG | 0.564997 | 1.3:-7081703 | MS.gene051543:CDS |
| CACATTAATGATTTCAACTG+TGG | 0.565922 | 1.3:+7083546 | None:intergenic |
| AGCTTCTCTCTAGGAGACAT+GGG | 0.568860 | 1.3:+7083181 | None:intergenic |
| ATCTTTAATTATTGGTGCCG+TGG | 0.571548 | 1.3:-7083029 | MS.gene051543:CDS |
| TAATATGGATGGTTCTTCAT+CGG | 0.571663 | 1.3:+7082838 | None:intergenic |
| TTTGCAGACCTGTCCGTCAA+GGG | 0.574356 | 1.3:-7084265 | MS.gene051543:CDS |
| TATTACCTTCGATTGGTGAA+GGG | 0.575420 | 1.3:-7082820 | MS.gene051543:CDS |
| ATTCACATTCCTAGAACATA+CGG | 0.576528 | 1.3:+7083459 | None:intergenic |
| GGGGAACCTGAACATGACAT+TGG | 0.579850 | 1.3:-7084114 | MS.gene051543:CDS |
| TATGGGGTGATAAAAGTTCA+GGG | 0.580001 | 1.3:-7084041 | MS.gene051543:CDS |
| ATCATTAATGCAGAGAAGGA+AGG | 0.585207 | 1.3:-7082981 | MS.gene051543:CDS |
| ATCCATTAAGCATATTGTGT+CGG | 0.586015 | 1.3:-7082561 | MS.gene051543:CDS |
| CCAATCGAAGGTAATATGGA+TGG | 0.586358 | 1.3:+7082827 | None:intergenic |
| TCTGAAGAGGGAAGGACACA+TGG | 0.586443 | 1.3:+7082754 | None:intergenic |
| ATGCGAATGAGGAGGGATTG+GGG | 0.589104 | 1.3:-7083102 | MS.gene051543:CDS |
| ATTGGATATACTTCTGTACA+TGG | 0.591836 | 1.3:-7082654 | MS.gene051543:CDS |
| GGAAAGCAACCAACGCAACC+CGG | 0.594488 | 1.3:+7081685 | None:intergenic |
| GAATCCTCAATCTTCATGGA+TGG | 0.594679 | 1.3:+7083382 | None:intergenic |
| ATTTCTCCACGAATGCATGA+TGG | 0.595591 | 1.3:+7082190 | None:intergenic |
| CATAGATGTTCGGTTTATGG+TGG | 0.601478 | 1.3:-7084204 | MS.gene051543:CDS |
| CGTGGAAGAGGAGTATGAAA+GGG | 0.603159 | 1.3:-7083011 | MS.gene051543:CDS |
| CCTCAATCGAATGAACATGA+AGG | 0.604269 | 1.3:+7084349 | None:intergenic |
| GAACTTCAATAATTCAGCAC+GGG | 0.606552 | 1.3:-7083707 | MS.gene051543:CDS |
| GAGGCACCATCATGCATTCG+TGG | 0.607479 | 1.3:-7082196 | MS.gene051543:CDS |
| ACAATGGGGTTTAGATGAGA+GGG | 0.609250 | 1.3:-7082918 | MS.gene051543:CDS |
| AGGGGTAGAAACATCAGAAG+AGG | 0.609985 | 1.3:-7083614 | MS.gene051543:CDS |
| CTAACGCCGTTGAAACTCAA+AGG | 0.611796 | 1.3:+7084321 | None:intergenic |
| CACAGTTGAAATCATTAATG+TGG | 0.613849 | 1.3:-7083545 | MS.gene051543:CDS |
| TGATGGTTTGATGGATCTGT+CGG | 0.614324 | 1.3:-7082155 | MS.gene051543:CDS |
| TAGTGAGGATCTGTTGATAG+GGG | 0.625054 | 1.3:-7084460 | MS.gene051543:CDS |
| GATTAGAAGCCTGAATGATG+AGG | 0.627712 | 1.3:+7082711 | None:intergenic |
| ATGACATCATCCAAGCTATG+TGG | 0.628164 | 1.3:+7083280 | None:intergenic |
| AAGGGTATTGGACGGATCTG+CGG | 0.628469 | 1.3:-7084247 | MS.gene051543:CDS |
| GCAGACTCGGAGTCATCTCA+AGG | 0.629555 | 1.3:-7083685 | MS.gene051543:CDS |
| CTAACAAGGAAGCTTCTGGA+AGG | 0.630482 | 1.3:-7082529 | MS.gene051543:intron |
| GATAGTAGAAGGCTTAAAAG+GGG | 0.633999 | 1.3:+7084539 | None:intergenic |
| CCAAGCCCTTCACCAATCGA+AGG | 0.641764 | 1.3:+7082815 | None:intergenic |
| GAGTGATTTCTTAAAGACGC+TGG | 0.643107 | 1.3:-7083245 | MS.gene051543:CDS |
| TTTCCAGTGATATCTAGCAA+AGG | 0.643248 | 1.3:+7082584 | None:intergenic |
| GGAACTTCAATAATTCAGCA+CGG | 0.650508 | 1.3:-7083708 | MS.gene051543:CDS |
| TCGTTTGTTCAAACTACGAG+CGG | 0.651591 | 1.3:-7082791 | MS.gene051543:CDS |
| TTTGTTCAAACTACGAGCGG+AGG | 0.651959 | 1.3:-7082788 | MS.gene051543:CDS |
| AACACCACGTCATTCTGAGT+CGG | 0.655925 | 1.3:+7083808 | None:intergenic |
| TGCATTCGTGGAGAAATCAA+CGG | 0.658580 | 1.3:-7082184 | MS.gene051543:CDS |
| AACATCAGGTTGATCTCACT+AGG | 0.663911 | 1.3:-7084089 | MS.gene051543:CDS |
| AAACCCGAGATTTGTTAGTG+AGG | 0.665396 | 1.3:-7084475 | MS.gene051543:CDS |
| ATGTTCTAGGAATGTGAATG+TGG | 0.669689 | 1.3:-7083455 | MS.gene051543:CDS |
| TTTGGGAGAGCACATAACAG+TGG | 0.673391 | 1.3:-7081960 | MS.gene051543:CDS |
| TGTCCGTCAAGGGTATTGGA+CGG | 0.677453 | 1.3:-7084255 | MS.gene051543:CDS |
| CCGAGTTTAGAAGAGTTATG+GGG | 0.678831 | 1.3:-7084057 | MS.gene051543:CDS |
| AGTGGTAACCGACAAGTTTG+GGG | 0.681795 | 1.3:-7081728 | MS.gene051543:CDS |
| TAAAACAAGCAACATTGTCG+GGG | 0.684076 | 1.3:+7083863 | None:intergenic |
| TATATCAAAAGCTTGATGAG+GGG | 0.686474 | 1.3:-7083729 | MS.gene051543:CDS |
| GATAAATTAATGCAACAATG+GGG | 0.695430 | 1.3:-7082932 | MS.gene051543:CDS |
| GTCGGATGCTAAGACTAACA+AGG | 0.709457 | 1.3:-7082543 | MS.gene051543:CDS |
| TAACTATGAGGATTATGACG+TGG | 0.723957 | 1.3:-7083062 | MS.gene051543:CDS |
| CATAACTCTTCTAAACTCGG+TGG | 0.734783 | 1.3:+7084060 | None:intergenic |
| TCGGCCGACTCAGAATGACG+TGG | 0.772807 | 1.3:-7083812 | MS.gene051543:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTGATTTATCTTTAATTAT+TGG | - | chr1.3:7083137-7083156 | MS.gene051543:CDS | 15.0% |
| !!! | AAAATTTGTTAAAACTTTCA+AGG | + | chr1.3:7081776-7081795 | None:intergenic | 15.0% |
| !!! | AAATTTGTTAAAACTTTCAA+GGG | + | chr1.3:7081775-7081794 | None:intergenic | 15.0% |
| !!! | TTGAAAGTTTTAACAAATTT+TGG | - | chr1.3:7081775-7081794 | MS.gene051543:CDS | 15.0% |
| !! | AAAAATAGGTAACGATATAT+TGG | - | chr1.3:7083502-7083521 | MS.gene051543:CDS | 20.0% |
| !! | ATCACAGAATTATATAATGA+TGG | - | chr1.3:7084140-7084159 | MS.gene051543:CDS | 20.0% |
| !! | TCACAGAATTATATAATGAT+GGG | - | chr1.3:7084141-7084160 | MS.gene051543:CDS | 20.0% |
| !! | TGATAAATTAATGCAACAAT+GGG | - | chr1.3:7083241-7083260 | MS.gene051543:CDS | 20.0% |
| !! | TTATCTGTTAAATAACTACA+TGG | + | chr1.3:7083846-7083865 | None:intergenic | 20.0% |
| !!! | ATTGAATCTCTTTTAATAGA+AGG | - | chr1.3:7083924-7083943 | MS.gene051543:CDS | 20.0% |
| !!! | TTATTTTGATACTCAAAGTT+TGG | + | chr1.3:7081520-7081539 | None:intergenic | 20.0% |
| !!! | TTGAATCTCTTTTAATAGAA+GGG | - | chr1.3:7083925-7083944 | MS.gene051543:CDS | 20.0% |
| !!! | TTGTTTTAGTTCTAACAATA+GGG | - | chr1.3:7082326-7082345 | MS.gene051543:CDS | 20.0% |
| ! | AAGAGTTGACATAAATGAAA+TGG | - | chr1.3:7084316-7084335 | MS.gene051543:CDS | 25.0% |
| ! | AAGGATGATTTAATGAGATT+TGG | - | chr1.3:7082234-7082253 | MS.gene051543:CDS | 25.0% |
| ! | AATTGTCTTCAAAATGGAAT+TGG | - | chr1.3:7081743-7081762 | MS.gene051543:CDS | 25.0% |
| ! | ACAAGAAATTGTCTTCAAAA+TGG | - | chr1.3:7081737-7081756 | MS.gene051543:CDS | 25.0% |
| ! | ACAGAAATAAATCAAATGCT+TGG | + | chr1.3:7083755-7083774 | None:intergenic | 25.0% |
| ! | CTGATAAATTAATGCAACAA+TGG | - | chr1.3:7083240-7083259 | MS.gene051543:CDS | 25.0% |
| ! | GAGTATCAAAATAAAGATGT+TGG | - | chr1.3:7081526-7081545 | MS.gene051543:CDS | 25.0% |
| ! | GATAAATTAATGCAACAATG+GGG | - | chr1.3:7083242-7083261 | MS.gene051543:CDS | 25.0% |
| ! | GATATCTTGATTCAACAATT+TGG | + | chr1.3:7084591-7084610 | None:intergenic | 25.0% |
| ! | TAATGTGGATGAGATTATTA+AGG | - | chr1.3:7082644-7082663 | MS.gene051543:CDS | 25.0% |
| ! | TCAAATGCTTGGAATAAAAA+AGG | + | chr1.3:7083744-7083763 | None:intergenic | 25.0% |
| ! | TCAATCTAGATTCAAAATCA+AGG | - | chr1.3:7084391-7084410 | MS.gene051543:CDS | 25.0% |
| ! | TCAATCTTGTTAATAGTCAT+AGG | + | chr1.3:7083909-7083928 | None:intergenic | 25.0% |
| !! | AATCTGTCTTCAAGTTAATA+AGG | + | chr1.3:7082284-7082303 | None:intergenic | 25.0% |
| !! | ACTGAAACTGATTCAAATAT+TGG | - | chr1.3:7081553-7081572 | MS.gene051543:CDS | 25.0% |
| !! | GCTAGATTAAATGTTAGTTT+CGG | - | chr1.3:7082198-7082217 | MS.gene051543:CDS | 25.0% |
| !! | TTGATTTTGAATCTAGATTG+AGG | + | chr1.3:7084392-7084411 | None:intergenic | 25.0% |
| !! | TTTAAGACAGTTTGAAAATG+AGG | - | chr1.3:7083016-7083035 | MS.gene051543:CDS | 25.0% |
| !!! | AATTTTGGTTCACAAAAGTT+TGG | - | chr1.3:7081790-7081809 | MS.gene051543:CDS | 25.0% |
| !!! | AGAATTATATAATGATGGGT+TGG | - | chr1.3:7084145-7084164 | MS.gene051543:CDS | 25.0% |
| !!! | CTTGTTTTAGTTCTAACAAT+AGG | - | chr1.3:7082325-7082344 | MS.gene051543:CDS | 25.0% |
| !!! | GAATTATATAATGATGGGTT+GGG | - | chr1.3:7084146-7084165 | MS.gene051543:CDS | 25.0% |
| !!! | TAAGTTGAGATTTTGACAAA+CGG | + | chr1.3:7081675-7081694 | None:intergenic | 25.0% |
| !!! | TTTTGATTTTAATGCGAATG+AGG | - | chr1.3:7083061-7083080 | MS.gene051543:CDS | 25.0% |
| AACAGATAAAGACAAATGCT+TGG | - | chr1.3:7083857-7083876 | MS.gene051543:CDS | 30.0% | |
| AACTTTGGTACATAGATGTT+CGG | - | chr1.3:7081960-7081979 | MS.gene051543:CDS | 30.0% | |
| ACTAAAACAAGCAACATTGT+CGG | + | chr1.3:7082316-7082335 | None:intergenic | 30.0% | |
| ACTGATAAGGTGAAAATAGA+TGG | - | chr1.3:7084176-7084195 | MS.gene051543:CDS | 30.0% | |
| AGATAGTAGAAGGCTTAAAA+GGG | + | chr1.3:7081639-7081658 | None:intergenic | 30.0% | |
| ATCAATCATTAATGCAGAGA+AGG | - | chr1.3:7083189-7083208 | MS.gene051543:CDS | 30.0% | |
| ATCCATTAAGCATATTGTGT+CGG | - | chr1.3:7083613-7083632 | MS.gene051543:CDS | 30.0% | |
| ATTAAGCAAAGCTCTATACT+TGG | - | chr1.3:7081606-7081625 | MS.gene051543:CDS | 30.0% | |
| ATTCACATTCCTAGAACATA+CGG | + | chr1.3:7082718-7082737 | None:intergenic | 30.0% | |
| ATTGGATATACTTCTGTACA+TGG | - | chr1.3:7083520-7083539 | MS.gene051543:CDS | 30.0% | |
| CACAGTTGAAATCATTAATG+TGG | - | chr1.3:7082629-7082648 | MS.gene051543:CDS | 30.0% | |
| CACATTAATGATTTCAACTG+TGG | + | chr1.3:7082631-7082650 | None:intergenic | 30.0% | |
| CTAAGAAATTATGAACCAGT+TGG | - | chr1.3:7084263-7084282 | MS.gene051543:CDS | 30.0% | |
| CTATATCAAAAGCTTGATGA+GGG | - | chr1.3:7082444-7082463 | MS.gene051543:intron | 30.0% | |
| GAATAATTCTGTTTCAGGAA+GGG | - | chr1.3:7083789-7083808 | MS.gene051543:CDS | 30.0% | |
| TAATATGGATGGTTCTTCAT+CGG | + | chr1.3:7083339-7083358 | None:intergenic | 30.0% | |
| TACACTTGAACATAACTATG+AGG | - | chr1.3:7083100-7083119 | MS.gene051543:CDS | 30.0% | |
| TATATCAAAAGCTTGATGAG+GGG | - | chr1.3:7082445-7082464 | MS.gene051543:intron | 30.0% | |
| TCCATGAATAATTCTGTTTC+AGG | - | chr1.3:7083784-7083803 | MS.gene051543:CDS | 30.0% | |
| TCCTGAAACAGAATTATTCA+TGG | + | chr1.3:7083788-7083807 | None:intergenic | 30.0% | |
| TCTTCATCGGATATTTCAAT+TGG | + | chr1.3:7083326-7083345 | None:intergenic | 30.0% | |
| TGAATAATTCTGTTTCAGGA+AGG | - | chr1.3:7083788-7083807 | MS.gene051543:CDS | 30.0% | |
| TGATTTATGCTTCTGTTGTT+GGG | - | chr1.3:7082040-7082059 | MS.gene051543:CDS | 30.0% | |
| TGTTGAATCAAGATATCTTG+TGG | - | chr1.3:7084594-7084613 | MS.gene051543:CDS | 30.0% | |
| TTGATTTATGCTTCTGTTGT+TGG | - | chr1.3:7082039-7082058 | MS.gene051543:CDS | 30.0% | |
| TTTCGGTTATCAAGTAATGA+AGG | - | chr1.3:7082215-7082234 | MS.gene051543:CDS | 30.0% | |
| ! | AATTCTTAGCATTTCTGAAG+AGG | + | chr1.3:7083436-7083455 | None:intergenic | 30.0% |
| ! | AATTTTCCATCAGTGAACAA+GGG | - | chr1.3:7082541-7082560 | MS.gene051543:CDS | 30.0% |
| ! | ACTGGTTCATAATTTCTTAG+AGG | + | chr1.3:7084263-7084282 | None:intergenic | 30.0% |
| ! | ATTCTTAGCATTTCTGAAGA+GGG | + | chr1.3:7083435-7083454 | None:intergenic | 30.0% |
| ! | ATTTTGAATCTAGATTGAGG+TGG | + | chr1.3:7084389-7084408 | None:intergenic | 30.0% |
| ! | CTCAAGATCTTCAAGAATTT+TGG | + | chr1.3:7083219-7083238 | None:intergenic | 30.0% |
| !! | AAGTTGAGATTTTGACAAAC+GGG | + | chr1.3:7081674-7081693 | None:intergenic | 30.0% |
| !!! | ACTATTTTTTGTAAGGACAC+CGG | + | chr1.3:7084429-7084448 | None:intergenic | 30.0% |
| !!! | ATATCGTTACCTATTTTTGC+AGG | + | chr1.3:7083500-7083519 | None:intergenic | 30.0% |
| !!! | GGTTACCACTATTTTTTGTA+AGG | + | chr1.3:7084436-7084455 | None:intergenic | 30.0% |
| AACTGAATCCTCAATCTTCA+TGG | + | chr1.3:7082799-7082818 | None:intergenic | 35.0% | |
| AATGAAGCAGTGATGAATTC+TGG | - | chr1.3:7082393-7082412 | MS.gene051543:intron | 35.0% | |
| ACATAAAAAGCCACATAGCT+TGG | - | chr1.3:7082884-7082903 | MS.gene051543:CDS | 35.0% | |
| ACCGAGTTTAGAAGAGTTAT+GGG | - | chr1.3:7082116-7082135 | MS.gene051543:CDS | 35.0% | |
| AGATCCTCACTAACAAATCT+CGG | + | chr1.3:7081706-7081725 | None:intergenic | 35.0% | |
| AGCATAAATCAAGAATCGCT+TGG | + | chr1.3:7082031-7082050 | None:intergenic | 35.0% | |
| ATATTACCTTCGATTGGTGA+AGG | - | chr1.3:7083353-7083372 | MS.gene051543:CDS | 35.0% | |
| ATCATTAATGCAGAGAAGGA+AGG | - | chr1.3:7083193-7083212 | MS.gene051543:CDS | 35.0% | |
| ATCCGACACAATATGCTTAA+TGG | + | chr1.3:7083618-7083637 | None:intergenic | 35.0% | |
| CAATTTGGGAACATGATATC+AGG | + | chr1.3:7084671-7084690 | None:intergenic | 35.0% | |
| CACTTAAGTAGTGTTCTTCT+TGG | + | chr1.3:7082845-7082864 | None:intergenic | 35.0% | |
| CATCCAAGGAGAACATAATT+TGG | - | chr1.3:7084079-7084098 | MS.gene051543:CDS | 35.0% | |
| CCTATATCAAAAGCTTGATG+AGG | - | chr1.3:7082443-7082462 | MS.gene051543:intron | 35.0% | |
| CTAAAACAAGCAACATTGTC+GGG | + | chr1.3:7082315-7082334 | None:intergenic | 35.0% | |
| CTTCATGTTCATTCGATTGA+GGG | - | chr1.3:7081826-7081845 | MS.gene051543:CDS | 35.0% | |
| GAACTTCAATAATTCAGCAC+GGG | - | chr1.3:7082467-7082486 | MS.gene051543:intron | 35.0% | |
| GAGATAGTAGAAGGCTTAAA+AGG | + | chr1.3:7081640-7081659 | None:intergenic | 35.0% | |
| GATAGTAGAAGGCTTAAAAG+GGG | + | chr1.3:7081638-7081657 | None:intergenic | 35.0% | |
| GATTTATGCTTCTGTTGTTG+GGG | - | chr1.3:7082041-7082060 | MS.gene051543:CDS | 35.0% | |
| GGAACTTCAATAATTCAGCA+CGG | - | chr1.3:7082466-7082485 | MS.gene051543:intron | 35.0% | |
| GGTGTCCTTACAAAAAATAG+TGG | - | chr1.3:7084428-7084447 | MS.gene051543:CDS | 35.0% | |
| GTACATAGATGTTCGGTTTA+TGG | - | chr1.3:7081967-7081986 | MS.gene051543:CDS | 35.0% | |
| GTGATAAAAGTTCAGGGAAA+TGG | - | chr1.3:7082139-7082158 | MS.gene051543:CDS | 35.0% | |
| GTTCCAAATTATGTTCTCCT+TGG | + | chr1.3:7084085-7084104 | None:intergenic | 35.0% | |
| TAAAACAAGCAACATTGTCG+GGG | + | chr1.3:7082314-7082333 | None:intergenic | 35.0% | |
| TAACTATGAGGATTATGACG+TGG | - | chr1.3:7083112-7083131 | MS.gene051543:CDS | 35.0% | |
| TAGAGACTAATGCACACATT+AGG | - | chr1.3:7084642-7084661 | MS.gene051543:CDS | 35.0% | |
| TAGGAATGTGAATGTGGATA+TGG | - | chr1.3:7082725-7082744 | MS.gene051543:CDS | 35.0% | |
| TATGGGGTGATAAAAGTTCA+GGG | - | chr1.3:7082133-7082152 | MS.gene051543:CDS | 35.0% | |
| TATTACCTTCGATTGGTGAA+GGG | - | chr1.3:7083354-7083373 | MS.gene051543:CDS | 35.0% | |
| TCGTTCGAATTTGATCAAAC+AGG | - | chr1.3:7082585-7082604 | MS.gene051543:CDS | 35.0% | |
| TGTCTTAAAAGCTTCTCTCT+AGG | + | chr1.3:7083005-7083024 | None:intergenic | 35.0% | |
| TTAGTGAGGATCTGTTGATA+GGG | - | chr1.3:7081713-7081732 | MS.gene051543:CDS | 35.0% | |
| TTATGGGGTGATAAAAGTTC+AGG | - | chr1.3:7082132-7082151 | MS.gene051543:CDS | 35.0% | |
| TTCACCAATCGAAGGTAATA+TGG | + | chr1.3:7083354-7083373 | None:intergenic | 35.0% | |
| TTGAAAATTCTCCAAGAACC+TGG | - | chr1.3:7083282-7083301 | MS.gene051543:CDS | 35.0% | |
| TTTCCAGTGATATCTAGCAA+AGG | + | chr1.3:7083593-7083612 | None:intergenic | 35.0% | |
| ! | ATTTTCCATCAGTGAACAAG+GGG | - | chr1.3:7082542-7082561 | MS.gene051543:CDS | 35.0% |
| ! | CCTCATCAAGCTTTTGATAT+AGG | + | chr1.3:7082446-7082465 | None:intergenic | 35.0% |
| ! | GAATTTTCCATCAGTGAACA+AGG | - | chr1.3:7082540-7082559 | MS.gene051543:CDS | 35.0% |
| ! | GGAAATGGAGTACAAGTTTT+AGG | - | chr1.3:7082154-7082173 | MS.gene051543:CDS | 35.0% |
| ! | TTTTCAGCAGAGATAGTAGA+AGG | + | chr1.3:7081649-7081668 | None:intergenic | 35.0% |
| !! | ATCTTTAATTATTGGTGCCG+TGG | - | chr1.3:7083145-7083164 | MS.gene051543:CDS | 35.0% |
| !! | ATGAGATTTGGTGCTAGTAA+TGG | - | chr1.3:7082246-7082265 | MS.gene051543:CDS | 35.0% |
| !! | ATGTTCTAGGAATGTGAATG+TGG | - | chr1.3:7082719-7082738 | MS.gene051543:CDS | 35.0% |
| !! | GATTTTAATGCGAATGAGGA+GGG | - | chr1.3:7083065-7083084 | MS.gene051543:CDS | 35.0% |
| !! | TATAATGATGGGTTGGGAAA+TGG | - | chr1.3:7084152-7084171 | MS.gene051543:CDS | 35.0% |
| !! | TGAGATTTGGTGCTAGTAAT+GGG | - | chr1.3:7082247-7082266 | MS.gene051543:CDS | 35.0% |
| !! | TGATTTTAATGCGAATGAGG+AGG | - | chr1.3:7083064-7083083 | MS.gene051543:CDS | 35.0% |
| !!! | AGTACAAGTTTTAGGTTGGT+TGG | - | chr1.3:7082162-7082181 | MS.gene051543:CDS | 35.0% |
| !!! | ATGGAGTACAAGTTTTAGGT+TGG | - | chr1.3:7082158-7082177 | MS.gene051543:CDS | 35.0% |
| AACAATGGGGTTTAGATGAG+AGG | - | chr1.3:7083255-7083274 | MS.gene051543:CDS | 40.0% | |
| AAGACTAACAAGGAAGCTTC+TGG | - | chr1.3:7083641-7083660 | MS.gene051543:CDS | 40.0% | |
| ACAATGGGGTTTAGATGAGA+GGG | - | chr1.3:7083256-7083275 | MS.gene051543:CDS | 40.0% | |
| ACATGACATTGGGAAACATC+AGG | - | chr1.3:7082071-7082090 | MS.gene051543:CDS | 40.0% | |
| ATAGGGATGTCGTAAAGCTT+CGG | - | chr1.3:7082343-7082362 | MS.gene051543:CDS | 40.0% | |
| ATAGTGGTAACCGACAAGTT+TGG | - | chr1.3:7084444-7084463 | MS.gene051543:CDS | 40.0% | |
| ATCAAGGAGATTCATCTTGC+CGG | - | chr1.3:7084407-7084426 | MS.gene051543:CDS | 40.0% | |
| ATGACATCATCCAAGCTATG+TGG | + | chr1.3:7082897-7082916 | None:intergenic | 40.0% | |
| ATGCCTTTGCTAGATATCAC+TGG | - | chr1.3:7083587-7083606 | MS.gene051543:CDS | 40.0% | |
| ATTTCTCCACGAATGCATGA+TGG | + | chr1.3:7083987-7084006 | None:intergenic | 40.0% | |
| CAATGGTTGAGACTTGATTC+TGG | - | chr1.3:7084053-7084072 | MS.gene051543:CDS | 40.0% | |
| CACCGAGTTTAGAAGAGTTA+TGG | - | chr1.3:7082115-7082134 | MS.gene051543:CDS | 40.0% | |
| CATAACTCTTCTAAACTCGG+TGG | + | chr1.3:7082117-7082136 | None:intergenic | 40.0% | |
| CATAGATGTTCGGTTTATGG+TGG | - | chr1.3:7081970-7081989 | MS.gene051543:CDS | 40.0% | |
| CCAATCGAAGGTAATATGGA+TGG | + | chr1.3:7083350-7083369 | None:intergenic | 40.0% | |
| CCATCCATATTACCTTCGAT+TGG | - | chr1.3:7083347-7083366 | MS.gene051543:CDS | 40.0% | |
| CCCCATAACTCTTCTAAACT+CGG | + | chr1.3:7082120-7082139 | None:intergenic | 40.0% | |
| CCGAGTTTAGAAGAGTTATG+GGG | - | chr1.3:7082117-7082136 | MS.gene051543:CDS | 40.0% | |
| CCTCAATCGAATGAACATGA+AGG | + | chr1.3:7081828-7081847 | None:intergenic | 40.0% | |
| CCTTCATGTTCATTCGATTG+AGG | - | chr1.3:7081825-7081844 | MS.gene051543:CDS | 40.0% | |
| GAATCCTCAATCTTCATGGA+TGG | + | chr1.3:7082795-7082814 | None:intergenic | 40.0% | |
| GAGTGATTTCTTAAAGACGC+TGG | - | chr1.3:7082929-7082948 | MS.gene051543:CDS | 40.0% | |
| GATCCTCACTAACAAATCTC+GGG | + | chr1.3:7081705-7081724 | None:intergenic | 40.0% | |
| GATTAGAAGCCTGAATGATG+AGG | + | chr1.3:7083466-7083485 | None:intergenic | 40.0% | |
| GGTTAAGTGTGCATTGGAAA+AGG | - | chr1.3:7081875-7081894 | MS.gene051543:CDS | 40.0% | |
| GTCGTTCTACCTGCAAAAAT+AGG | - | chr1.3:7083488-7083507 | MS.gene051543:CDS | 40.0% | |
| GTCTAGCATGTCAAATGAAG+AGG | - | chr1.3:7083959-7083978 | MS.gene051543:CDS | 40.0% | |
| GTTAGTGAGGATCTGTTGAT+AGG | - | chr1.3:7081712-7081731 | MS.gene051543:CDS | 40.0% | |
| TAACGCAAGATGTGATTCAC+TGG | - | chr1.3:7082689-7082708 | MS.gene051543:CDS | 40.0% | |
| TAGTGGTAACCGACAAGTTT+GGG | - | chr1.3:7084445-7084464 | MS.gene051543:CDS | 40.0% | |
| TCGTTTGTTCAAACTACGAG+CGG | - | chr1.3:7083383-7083402 | MS.gene051543:CDS | 40.0% | |
| TCTACCATCCATGAAGATTG+AGG | - | chr1.3:7082788-7082807 | MS.gene051543:CDS | 40.0% | |
| TGCATTCGTGGAGAAATCAA+CGG | - | chr1.3:7083990-7084009 | MS.gene051543:CDS | 40.0% | |
| TGCGGAGTTTGATGAAACTT+TGG | - | chr1.3:7081945-7081964 | MS.gene051543:CDS | 40.0% | |
| TGTTTCCCAATGTCATGTTC+AGG | + | chr1.3:7082069-7082088 | None:intergenic | 40.0% | |
| TTTCTTAAAGACGCTGGCAT+TGG | - | chr1.3:7082935-7082954 | MS.gene051543:CDS | 40.0% | |
| ! | AGGTTGGTTGGAAAAGCTTT+AGG | - | chr1.3:7082174-7082193 | MS.gene051543:CDS | 40.0% |
| ! | ATTTTTGCAGGTAGAACGAC+TGG | + | chr1.3:7083488-7083507 | None:intergenic | 40.0% |
| ! | TAGTGAGGATCTGTTGATAG+GGG | - | chr1.3:7081714-7081733 | MS.gene051543:CDS | 40.0% |
| ! | TGATGGTTTGATGGATCTGT+CGG | - | chr1.3:7084019-7084038 | MS.gene051543:CDS | 40.0% |
| ! | TTAGCATTTCTGAAGAGGGA+AGG | + | chr1.3:7083431-7083450 | None:intergenic | 40.0% |
| !! | AAACCCGAGATTTGTTAGTG+AGG | - | chr1.3:7081699-7081718 | MS.gene051543:CDS | 40.0% |
| !! | AACATCAGGTTGATCTCACT+AGG | - | chr1.3:7082085-7082104 | MS.gene051543:CDS | 40.0% |
| AACACCACGTCATTCTGAGT+CGG | + | chr1.3:7082369-7082388 | None:intergenic | 45.0% | |
| AATGCGAATGAGGAGGGATT+GGG | - | chr1.3:7083071-7083090 | MS.gene051543:CDS | 45.0% | |
| AATTCTCCAAGAACCTGGTC+TGG | - | chr1.3:7083287-7083306 | MS.gene051543:CDS | 45.0% | |
| AGGGGTAGAAACATCAGAAG+AGG | - | chr1.3:7082560-7082579 | MS.gene051543:CDS | 45.0% | |
| AGTGGTAACCGACAAGTTTG+GGG | - | chr1.3:7084446-7084465 | MS.gene051543:CDS | 45.0% | |
| CACTGGATACCGTATGTTCT+AGG | - | chr1.3:7082706-7082725 | MS.gene051543:CDS | 45.0% | |
| CCTTTCATACTCCTCTTCCA+CGG | + | chr1.3:7083165-7083184 | None:intergenic | 45.0% | |
| CTAACAAGGAAGCTTCTGGA+AGG | - | chr1.3:7083645-7083664 | MS.gene051543:CDS | 45.0% | |
| CTAACGCCGTTGAAACTCAA+AGG | + | chr1.3:7081856-7081875 | None:intergenic | 45.0% | |
| CTTGATTCTGGCATCATCCA+AGG | - | chr1.3:7084065-7084084 | MS.gene051543:CDS | 45.0% | |
| GAAATCAACGGCGATCTTGA+TGG | - | chr1.3:7084002-7084021 | MS.gene051543:CDS | 45.0% | |
| GACAGTATTACACATGCCAC+TGG | + | chr1.3:7084513-7084532 | None:intergenic | 45.0% | |
| GCGTTAGGTTAAGTGTGCAT+TGG | - | chr1.3:7081869-7081888 | MS.gene051543:CDS | 45.0% | |
| GGGAACCTGAACATGACATT+GGG | - | chr1.3:7082061-7082080 | MS.gene051543:CDS | 45.0% | |
| GTCAAGAAACTCTGACGTCT+CGG | + | chr1.3:7082823-7082842 | None:intergenic | 45.0% | |
| GTCGGATGCTAAGACTAACA+AGG | - | chr1.3:7083631-7083650 | MS.gene051543:CDS | 45.0% | |
| TAATGCGAATGAGGAGGGAT+TGG | - | chr1.3:7083070-7083089 | MS.gene051543:CDS | 45.0% | |
| TCATTTCGCTCAAGCTGTGA+CGG | - | chr1.3:7082966-7082985 | MS.gene051543:CDS | 45.0% | |
| TCTGTTTCAGGAAGGGATCA+TGG | - | chr1.3:7083796-7083815 | MS.gene051543:CDS | 45.0% | |
| TGTCGGTAACGTTGGATCAA+TGG | - | chr1.3:7084036-7084055 | MS.gene051543:CDS | 45.0% | |
| TTCTACCCCTTGTTCACTGA+TGG | + | chr1.3:7082550-7082569 | None:intergenic | 45.0% | |
| TTCTTAGAGGATCTCTGTGC+TGG | + | chr1.3:7084250-7084269 | None:intergenic | 45.0% | |
| TTTGTTCAAACTACGAGCGG+AGG | - | chr1.3:7083386-7083405 | MS.gene051543:CDS | 45.0% | |
| ! | AAGCTTCTCTCTAGGAGACA+TGG | + | chr1.3:7082997-7083016 | None:intergenic | 45.0% |
| ! | AGCTTCTCTCTAGGAGACAT+GGG | + | chr1.3:7082996-7083015 | None:intergenic | 45.0% |
| ! | CGTGGAAGAGGAGTATGAAA+GGG | - | chr1.3:7083163-7083182 | MS.gene051543:CDS | 45.0% |
| ! | CTTTGAGTTTCAACGGCGTT+AGG | - | chr1.3:7081854-7081873 | MS.gene051543:CDS | 45.0% |
| ! | GAAAATGAGGCTCTAGCTTC+AGG | - | chr1.3:7083029-7083048 | MS.gene051543:CDS | 45.0% |
| ! | GGACTGCCTTTGAGTTTCAA+CGG | - | chr1.3:7081847-7081866 | MS.gene051543:CDS | 45.0% |
| ! | GGCAGAAAGCGCAGTTATTT+GGG | - | chr1.3:7084197-7084216 | MS.gene051543:CDS | 45.0% |
| ! | TGGCAGAAAGCGCAGTTATT+TGG | - | chr1.3:7084196-7084215 | MS.gene051543:CDS | 45.0% |
| ! | TTTGGGAGAGCACATAACAG+TGG | - | chr1.3:7084214-7084233 | MS.gene051543:CDS | 45.0% |
| !! | AATTATTGGTGCCGTGGAAG+AGG | - | chr1.3:7083151-7083170 | MS.gene051543:CDS | 45.0% |
| !! | GTTGGGAAATGGCACTGATA+AGG | - | chr1.3:7084163-7084182 | MS.gene051543:CDS | 45.0% |
| !!! | TCCAATGCTGGTTTTAGCTC+AGG | - | chr1.3:7084289-7084308 | MS.gene051543:CDS | 45.0% |
| AATCCACCAGACCAGGTTCT+TGG | + | chr1.3:7083296-7083315 | None:intergenic | 50.0% | |
| ACCAGTTGGAGTTCCAATGC+TGG | - | chr1.3:7084277-7084296 | MS.gene051543:CDS | 50.0% | |
| ACTGCGTCTCAGCAACAATC+CGG | - | chr1.3:7084470-7084489 | MS.gene051543:CDS | 50.0% | |
| ACTTCCAAATCCACCAGACC+AGG | + | chr1.3:7083303-7083322 | None:intergenic | 50.0% | |
| ATGCGAATGAGGAGGGATTG+GGG | - | chr1.3:7083072-7083091 | MS.gene051543:CDS | 50.0% | |
| GATCCGTCCAATACCCTTGA+CGG | + | chr1.3:7081925-7081944 | None:intergenic | 50.0% | |
| GATGGATCTGTCGGTAACGT+TGG | - | chr1.3:7084028-7084047 | MS.gene051543:CDS | 50.0% | |
| GCCTGAGCTAAAACCAGCAT+TGG | + | chr1.3:7084293-7084312 | None:intergenic | 50.0% | |
| GGGGAACCTGAACATGACAT+TGG | - | chr1.3:7082060-7082079 | MS.gene051543:CDS | 50.0% | |
| TAATTCAGCACGGGCAGACT+CGG | - | chr1.3:7082476-7082495 | MS.gene051543:intron | 50.0% | |
| TCGGTTTATGGTGGTCGTGT+GGG | - | chr1.3:7081979-7081998 | MS.gene051543:CDS | 50.0% | |
| TCTGAAGAGGGAAGGACACA+TGG | + | chr1.3:7083423-7083442 | None:intergenic | 50.0% | |
| TTCGGTTTATGGTGGTCGTG+TGG | - | chr1.3:7081978-7081997 | MS.gene051543:CDS | 50.0% | |
| TTGTGCGAGCCTCATCATTC+AGG | - | chr1.3:7083454-7083473 | MS.gene051543:CDS | 50.0% | |
| TTTGCAGACCTGTCCGTCAA+GGG | - | chr1.3:7081909-7081928 | MS.gene051543:CDS | 50.0% | |
| ! | ACCAGCATTGGAACTCCAAC+TGG | + | chr1.3:7084281-7084300 | None:intergenic | 50.0% |
| ! | CCGTGGAAGAGGAGTATGAA+AGG | - | chr1.3:7083162-7083181 | MS.gene051543:CDS | 50.0% |
| ! | CGGCGATCTTGATGGTTTGA+TGG | - | chr1.3:7084010-7084029 | MS.gene051543:CDS | 50.0% |
| ! | TTTTGCAGACCTGTCCGTCA+AGG | - | chr1.3:7081908-7081927 | MS.gene051543:CDS | 50.0% |
| !! | AAGGGTATTGGACGGATCTG+CGG | - | chr1.3:7081927-7081946 | MS.gene051543:CDS | 50.0% |
| !! | AGAACCTGGTCTGGTGGATT+TGG | - | chr1.3:7083296-7083315 | MS.gene051543:CDS | 50.0% |
| !! | GCAGTGATGAATTCTGGCTC+AGG | - | chr1.3:7082399-7082418 | MS.gene051543:intron | 50.0% |
| !! | TGTCCGTCAAGGGTATTGGA+CGG | - | chr1.3:7081919-7081938 | MS.gene051543:CDS | 50.0% |
| !! | TTGCGTTGGTTGCTTTCCAG+TGG | - | chr1.3:7084494-7084513 | MS.gene051543:CDS | 50.0% |
| ACGCAGTGCCCCAAACTTGT+CGG | + | chr1.3:7084457-7084476 | None:intergenic | 55.0% | |
| AGCAACAATCCGGGTTGCGT+TGG | - | chr1.3:7084480-7084499 | MS.gene051543:CDS | 55.0% | |
| CCAAGCCCTTCACCAATCGA+AGG | + | chr1.3:7083362-7083381 | None:intergenic | 55.0% | |
| CCTTCGATTGGTGAAGGGCT+TGG | - | chr1.3:7083359-7083378 | MS.gene051543:CDS | 55.0% | |
| CGGTTTATGGTGGTCGTGTG+GGG | - | chr1.3:7081980-7081999 | MS.gene051543:CDS | 55.0% | |
| CTGCGTCTCAGCAACAATCC+GGG | - | chr1.3:7084471-7084490 | MS.gene051543:CDS | 55.0% | |
| GCAGACTCGGAGTCATCTCA+AGG | - | chr1.3:7082489-7082508 | MS.gene051543:intron | 55.0% | |
| GGAAAGCAACCAACGCAACC+CGG | + | chr1.3:7084492-7084511 | None:intergenic | 55.0% | |
| TCTCCAAGAACCTGGTCTGG+TGG | - | chr1.3:7083290-7083309 | MS.gene051543:CDS | 55.0% | |
| ! | CTACGAGCGGAGGCTTTTTG+AGG | - | chr1.3:7083396-7083415 | MS.gene051543:CDS | 55.0% |
| ! | GACCTGTCCGTCAAGGGTAT+TGG | - | chr1.3:7081915-7081934 | MS.gene051543:CDS | 55.0% |
| ! | GAGGCACCATCATGCATTCG+TGG | - | chr1.3:7083978-7083997 | MS.gene051543:CDS | 55.0% |
| ! | GTCCAATACCCTTGACGGAC+AGG | + | chr1.3:7081920-7081939 | None:intergenic | 55.0% |
| TATGGTGGTCGTGTGGGGTC+TGG | - | chr1.3:7081985-7082004 | MS.gene051543:CDS | 60.0% | |
| ! | TCGGCCGACTCAGAATGACG+TGG | - | chr1.3:7082362-7082381 | MS.gene051543:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 7081505 | 7084691 | 7081505 | ID=MS.gene051543 |
| chr1.3 | mRNA | 7081505 | 7084691 | 7081505 | ID=MS.gene051543.t1;Parent=MS.gene051543 |
| chr1.3 | exon | 7082530 | 7084691 | 7082530 | ID=MS.gene051543.t1.exon1;Parent=MS.gene051543.t1 |
| chr1.3 | CDS | 7082530 | 7084691 | 7082530 | ID=cds.MS.gene051543.t1;Parent=MS.gene051543.t1 |
| chr1.3 | exon | 7081505 | 7082390 | 7081505 | ID=MS.gene051543.t1.exon2;Parent=MS.gene051543.t1 |
| chr1.3 | CDS | 7081505 | 7082390 | 7081505 | ID=cds.MS.gene051543.t1;Parent=MS.gene051543.t1 |
| Gene Sequence |
| Protein sequence |
