Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81359.t1 | XP_004497780.1 | 89.8 | 342 | 35 | 0 | 4 | 345 | 3 | 344 | 3.00E-178 | 634.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81359.t1 | Q9SLN8 | 62.3 | 345 | 128 | 1 | 1 | 345 | 1 | 343 | 8.0e-127 | 454.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81359.t1 | A0A1S2Y2K2 | 89.8 | 342 | 35 | 0 | 4 | 345 | 3 | 344 | 2.2e-178 | 634.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene81359 | 0.830735 | 2.48E-55 | -1.69E-46 |
| MS.gene049182 | MS.gene81359 | 0.836076 | 1.16E-56 | -1.69E-46 |
| MS.gene050945 | MS.gene81359 | 0.801638 | 8.19E-49 | -1.69E-46 |
| MS.gene051959 | MS.gene81359 | 0.842752 | 2.13E-58 | -1.69E-46 |
| MS.gene051960 | MS.gene81359 | 0.848135 | 7.43E-60 | -1.69E-46 |
| MS.gene052053 | MS.gene81359 | 0.87451 | 6.39E-68 | -1.69E-46 |
| MS.gene052559 | MS.gene81359 | 0.808868 | 2.51E-50 | -1.69E-46 |
| MS.gene052560 | MS.gene81359 | 0.811558 | 6.59E-51 | -1.69E-46 |
| MS.gene053602 | MS.gene81359 | 0.819231 | 1.29E-52 | -1.69E-46 |
| MS.gene054413 | MS.gene81359 | 0.801719 | 7.88E-49 | -1.69E-46 |
| MS.gene055150 | MS.gene81359 | 0.832154 | 1.11E-55 | -1.69E-46 |
| MS.gene055549 | MS.gene81359 | 0.872179 | 3.88E-67 | -1.69E-46 |
| MS.gene055550 | MS.gene81359 | 0.869786 | 2.38E-66 | -1.69E-46 |
| MS.gene055551 | MS.gene81359 | 0.811649 | 6.30E-51 | -1.69E-46 |
| MS.gene055886 | MS.gene81359 | 0.802947 | 4.41E-49 | -1.69E-46 |
| MS.gene056530 | MS.gene81359 | 0.856986 | 2.22E-62 | -1.69E-46 |
| MS.gene056761 | MS.gene81359 | 0.812577 | 3.95E-51 | -1.69E-46 |
| MS.gene057001 | MS.gene81359 | 0.823088 | 1.67E-53 | -1.69E-46 |
| MS.gene057148 | MS.gene81359 | -0.832537 | 8.93E-56 | -1.69E-46 |
| MS.gene058628 | MS.gene81359 | 0.821839 | 3.26E-53 | -1.69E-46 |
| MS.gene058630 | MS.gene81359 | 0.811185 | 7.95E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene81359 | 0.816309 | 5.91E-52 | -1.69E-46 |
| MS.gene06023 | MS.gene81359 | 0.821316 | 4.31E-53 | -1.69E-46 |
| MS.gene060522 | MS.gene81359 | 0.803511 | 3.37E-49 | -1.69E-46 |
| MS.gene060964 | MS.gene81359 | 0.802196 | 6.29E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81359.t1 | MTR_8g010030 | 63.265 | 343 | 124 | 2 | 4 | 345 | 3 | 344 | 1.37e-161 | 455 |
| MS.gene81359.t1 | MTR_8g009820 | 63.158 | 342 | 125 | 1 | 4 | 345 | 62 | 402 | 6.77e-159 | 451 |
| MS.gene81359.t1 | MTR_8g009980 | 60.174 | 344 | 133 | 2 | 4 | 345 | 3 | 344 | 8.85e-154 | 436 |
| MS.gene81359.t1 | MTR_8g009840 | 61.310 | 336 | 128 | 2 | 4 | 339 | 3 | 336 | 2.49e-152 | 439 |
| MS.gene81359.t1 | MTR_4g082970 | 60.000 | 345 | 134 | 2 | 3 | 345 | 8 | 350 | 9.15e-152 | 431 |
| MS.gene81359.t1 | MTR_8g009830 | 60.177 | 339 | 133 | 2 | 7 | 345 | 6 | 342 | 1.18e-151 | 430 |
| MS.gene81359.t1 | MTR_8g010020 | 59.357 | 342 | 107 | 2 | 4 | 345 | 3 | 312 | 1.50e-145 | 413 |
| MS.gene81359.t1 | MTR_7g406860 | 60.350 | 343 | 134 | 2 | 4 | 345 | 5 | 346 | 7.49e-145 | 413 |
| MS.gene81359.t1 | MTR_8g010000 | 55.977 | 343 | 124 | 3 | 4 | 345 | 3 | 319 | 4.86e-137 | 392 |
| MS.gene81359.t1 | MTR_0011s0280 | 44.380 | 347 | 186 | 4 | 4 | 345 | 2 | 346 | 8.80e-102 | 303 |
| MS.gene81359.t1 | MTR_8g007325 | 63.594 | 217 | 78 | 1 | 4 | 220 | 3 | 218 | 2.24e-94 | 280 |
| MS.gene81359.t1 | MTR_5g095030 | 91.270 | 126 | 11 | 0 | 218 | 343 | 11 | 136 | 8.63e-79 | 237 |
| MS.gene81359.t1 | MTR_2g088190 | 39.943 | 348 | 202 | 6 | 1 | 342 | 1 | 347 | 6.83e-77 | 240 |
| MS.gene81359.t1 | MTR_2g088220 | 40.549 | 328 | 185 | 7 | 1 | 320 | 1 | 326 | 5.40e-73 | 230 |
| MS.gene81359.t1 | MTR_2g088200 | 38.838 | 327 | 193 | 5 | 23 | 342 | 22 | 348 | 5.99e-67 | 214 |
| MS.gene81359.t1 | MTR_5g095020 | 96.774 | 62 | 1 | 1 | 25 | 86 | 1 | 61 | 4.95e-34 | 120 |
| MS.gene81359.t1 | MTR_4g086400 | 37.321 | 209 | 123 | 5 | 140 | 342 | 276 | 482 | 1.01e-29 | 119 |
| MS.gene81359.t1 | MTR_4g086400 | 37.321 | 209 | 123 | 5 | 140 | 342 | 416 | 622 | 1.46e-29 | 119 |
| MS.gene81359.t1 | MTR_4g086410 | 36.842 | 209 | 124 | 5 | 140 | 342 | 416 | 622 | 6.78e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81359.t1 | AT1G26320 | 63.768 | 345 | 119 | 3 | 5 | 345 | 9 | 351 | 4.59e-158 | 447 |
| MS.gene81359.t1 | AT1G26320 | 62.899 | 345 | 117 | 4 | 5 | 345 | 9 | 346 | 3.84e-154 | 437 |
| MS.gene81359.t1 | AT5G16990 | 60.756 | 344 | 126 | 4 | 7 | 345 | 4 | 343 | 4.32e-153 | 434 |
| MS.gene81359.t1 | AT5G17000 | 60.870 | 345 | 125 | 4 | 7 | 345 | 5 | 345 | 8.65e-153 | 433 |
| MS.gene81359.t1 | AT5G16970 | 60.870 | 345 | 125 | 4 | 7 | 345 | 5 | 345 | 1.19e-152 | 433 |
| MS.gene81359.t1 | AT3G03080 | 61.047 | 344 | 129 | 2 | 5 | 345 | 9 | 350 | 2.24e-152 | 432 |
| MS.gene81359.t1 | AT5G37940 | 59.827 | 346 | 128 | 4 | 7 | 345 | 12 | 353 | 1.68e-149 | 425 |
| MS.gene81359.t1 | AT5G37980 | 59.302 | 344 | 133 | 3 | 7 | 345 | 12 | 353 | 1.55e-148 | 422 |
| MS.gene81359.t1 | AT5G16960 | 59.357 | 342 | 133 | 3 | 6 | 343 | 5 | 344 | 2.13e-146 | 417 |
| MS.gene81359.t1 | AT5G16960 | 59.357 | 342 | 133 | 3 | 6 | 343 | 5 | 344 | 2.13e-146 | 417 |
| MS.gene81359.t1 | AT5G38000 | 58.140 | 344 | 133 | 4 | 7 | 343 | 12 | 351 | 1.83e-144 | 412 |
| MS.gene81359.t1 | AT5G38000 | 57.018 | 342 | 135 | 5 | 7 | 341 | 12 | 348 | 6.54e-139 | 398 |
| MS.gene81359.t1 | AT3G59845 | 54.755 | 347 | 152 | 3 | 1 | 343 | 1 | 346 | 5.50e-133 | 383 |
| MS.gene81359.t1 | AT1G65560 | 56.091 | 353 | 144 | 6 | 1 | 345 | 1 | 350 | 1.80e-130 | 377 |
| MS.gene81359.t1 | AT5G38000 | 54.360 | 344 | 127 | 5 | 7 | 343 | 12 | 332 | 7.28e-129 | 372 |
| MS.gene81359.t1 | AT5G16980 | 50.147 | 339 | 130 | 3 | 7 | 345 | 6 | 305 | 7.05e-113 | 330 |
| MS.gene81359.t1 | AT1G65560 | 59.559 | 272 | 104 | 3 | 79 | 345 | 4 | 274 | 2.45e-110 | 323 |
| MS.gene81359.t1 | AT5G16980 | 65.652 | 230 | 79 | 0 | 116 | 345 | 10 | 239 | 5.03e-109 | 318 |
| MS.gene81359.t1 | AT5G16980 | 65.652 | 230 | 79 | 0 | 116 | 345 | 10 | 239 | 5.03e-109 | 318 |
| MS.gene81359.t1 | AT3G59845 | 60.408 | 245 | 95 | 2 | 100 | 343 | 1 | 244 | 1.16e-104 | 307 |
| MS.gene81359.t1 | AT5G17000 | 61.086 | 221 | 76 | 4 | 7 | 221 | 5 | 221 | 5.44e-92 | 275 |
| MS.gene81359.t1 | AT1G49670 | 34.928 | 209 | 128 | 5 | 140 | 342 | 412 | 618 | 2.13e-25 | 107 |
| MS.gene81359.t1 | AT1G49670 | 34.975 | 203 | 124 | 5 | 146 | 342 | 441 | 641 | 5.72e-24 | 103 |
| MS.gene81359.t1 | AT5G37960 | 45.783 | 83 | 44 | 1 | 264 | 345 | 25 | 107 | 5.77e-15 | 70.5 |
Find 66 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACATAATCTCCTTTCTT+AGG | 0.186749 | 5.2:-80134801 | None:intergenic |
| TCTCAGCCAATTGTTGGATA+TGG | 0.212277 | 5.2:+80134481 | MS.gene81359:intron |
| TTGTTCCTCCTTGTAATTAA+AGG | 0.220154 | 5.2:-80135058 | None:intergenic |
| GTCTTTATCTCTTCAGCATT+TGG | 0.257772 | 5.2:+80134819 | MS.gene81359:CDS |
| AAATACATGTCTGTTTGTTT+TGG | 0.259959 | 5.2:-80133661 | None:intergenic |
| GTACCTCTTTCCTATTATAC+TGG | 0.275241 | 5.2:+80134634 | MS.gene81359:CDS |
| GCTTCTTCTGAAGCATCTTT+AGG | 0.302866 | 5.2:-80133712 | None:intergenic |
| ACCAAGTAATCCAGTATAAT+AGG | 0.317896 | 5.2:-80134644 | None:intergenic |
| TTTAGGAAGTTGTAAACTAA+TGG | 0.368693 | 5.2:-80133695 | None:intergenic |
| CATTGTGTACTTACTGAATC+TGG | 0.374679 | 5.2:-80133826 | None:intergenic |
| AAGTATATGTCTATTCCTTC+AGG | 0.376687 | 5.2:-80135464 | None:intergenic |
| TCCTATTATACTGGATTACT+TGG | 0.387026 | 5.2:+80134643 | MS.gene81359:CDS |
| TGTTTCTCTCAGCCAATTGT+TGG | 0.398931 | 5.2:+80134475 | MS.gene81359:intron |
| AAGTGCTGGAAGTAAATATA+AGG | 0.404456 | 5.2:+80134899 | MS.gene81359:CDS |
| CATACTCCATATCCAACAAT+TGG | 0.417973 | 5.2:-80134487 | None:intergenic |
| CTAGCTTCAGACTACATAAC+TGG | 0.420922 | 5.2:+80133634 | MS.gene81359:CDS |
| ACTTCTTCAATGTTCCATCT+AGG | 0.430843 | 5.2:-80135083 | None:intergenic |
| GGTGCAGTTGGTCAACTTGT+TGG | 0.433984 | 5.2:+80134840 | MS.gene81359:CDS |
| TCTTCAGCATTTGGTGCAGT+TGG | 0.434713 | 5.2:+80134828 | MS.gene81359:CDS |
| GACATATACTTTGACAATGT+TGG | 0.436284 | 5.2:+80135476 | MS.gene81359:CDS |
| AGACATAATCTCCTTTCTTA+GGG | 0.438933 | 5.2:-80134800 | None:intergenic |
| TGTTATGTTGTTGGAAGTGC+TGG | 0.440024 | 5.2:+80134885 | MS.gene81359:CDS |
| GATGCTGTACTCTTCCCATT+TGG | 0.449214 | 5.2:-80134569 | None:intergenic |
| GGCCTCATCAAACCCAAACT+TGG | 0.459549 | 5.2:-80135037 | None:intergenic |
| CGCGGTCGAATTGTGGTGGC+TGG | 0.464338 | 5.2:+80135539 | MS.gene81359:CDS |
| TTTGATGAGGCTATCAGTCT+TGG | 0.465767 | 5.2:-80134596 | None:intergenic |
| TGGTCAACTAGCAAAATTGA+TGG | 0.468450 | 5.2:+80134860 | MS.gene81359:CDS |
| TGGTTTGGGGAGTCACCAAA+TGG | 0.470534 | 5.2:+80134554 | MS.gene81359:CDS |
| ATTATATATGTAGGTATGCC+TGG | 0.474482 | 5.2:+80134741 | MS.gene81359:intron |
| TTGATGGGATGTTATGTTGT+TGG | 0.475372 | 5.2:+80134876 | MS.gene81359:CDS |
| ACTTACTGAATCTGGAGAAA+AGG | 0.479229 | 5.2:-80133818 | None:intergenic |
| AAGGAGGAACAAGACCTAGA+TGG | 0.479388 | 5.2:+80135069 | MS.gene81359:CDS |
| ATCTTCCCTTCCCTAACATA+AGG | 0.481674 | 5.2:-80135701 | None:intergenic |
| CCTGGTATGACTGCTTATGC+AGG | 0.485648 | 5.2:+80134759 | MS.gene81359:CDS |
| CGCGGCGTCTCATGTTAAGA+AGG | 0.487677 | 5.2:-80135520 | None:intergenic |
| ATGAGAGGAACCAAAAGAAC+AGG | 0.495779 | 5.2:+80133775 | MS.gene81359:CDS |
| AACATTGCTTCTAATGCAGC+TGG | 0.496232 | 5.2:-80135764 | None:intergenic |
| AGAACAAGTGATCAACAAAC+AGG | 0.499152 | 5.2:+80133609 | MS.gene81359:CDS |
| TGATGAGGCCTTTAATTACA+AGG | 0.501845 | 5.2:+80135050 | MS.gene81359:CDS |
| TATGTTGAAGATATAGCTAA+AGG | 0.505580 | 5.2:+80135728 | MS.gene81359:CDS |
| GAAGTTGGTGTCCCTAAGAA+AGG | 0.513037 | 5.2:+80134789 | MS.gene81359:CDS |
| ATGTTGAAGATATAGCTAAA+GGG | 0.517100 | 5.2:+80135729 | MS.gene81359:CDS |
| TATGCAGGTTTCTATGAAGT+TGG | 0.517868 | 5.2:+80134774 | MS.gene81359:CDS |
| TGCTTCAGAAGAAGCTGTGT+TGG | 0.523213 | 5.2:+80133720 | MS.gene81359:CDS |
| ATGTTCACAGGCAAAAGTGC+TGG | 0.538532 | 5.2:+80135782 | MS.gene81359:CDS |
| CCTGCATAAGCAGTCATACC+AGG | 0.538967 | 5.2:-80134759 | None:intergenic |
| AAGTTGTAAACTAATGGTAG+AGG | 0.558112 | 5.2:-80133689 | None:intergenic |
| AATCCAGTATAATAGGAAAG+AGG | 0.565113 | 5.2:-80134637 | None:intergenic |
| GTTGATAGGTACTTTCCTGA+AGG | 0.565387 | 5.2:+80135449 | MS.gene81359:intron |
| GAGACGCCGCGGTCGAATTG+TGG | 0.565480 | 5.2:+80135532 | MS.gene81359:CDS |
| GACCAAGTTTGGGTTTGATG+AGG | 0.568115 | 5.2:+80135035 | MS.gene81359:CDS |
| TCTTGTGATCCTTACATGAG+AGG | 0.570442 | 5.2:+80133760 | MS.gene81359:CDS |
| ATATACTTTGACAATGTTGG+TGG | 0.576525 | 5.2:+80135479 | MS.gene81359:CDS |
| ATATGGAGTATGCAAAGTGT+TGG | 0.578801 | 5.2:+80134498 | MS.gene81359:CDS |
| CTGGAGAAAAGGAATAAAAG+AGG | 0.580653 | 5.2:-80133807 | None:intergenic |
| GCATTAGAAGCAATGTTCAC+AGG | 0.584098 | 5.2:+80135770 | MS.gene81359:CDS |
| GGTTTGGGGAGTCACCAAAT+GGG | 0.589430 | 5.2:+80134555 | MS.gene81359:CDS |
| TAGCTAAAGGGATTGAGAGT+GGG | 0.592897 | 5.2:+80135741 | MS.gene81359:CDS |
| GCGGCGTCTCATGTTAAGAA+GGG | 0.635176 | 5.2:-80135519 | None:intergenic |
| TATGAACTTGATGAACCTCA+AGG | 0.637072 | 5.2:+80135575 | MS.gene81359:CDS |
| ATAGCTAAAGGGATTGAGAG+TGG | 0.645427 | 5.2:+80135740 | MS.gene81359:CDS |
| GGTCAACTAGCAAAATTGAT+GGG | 0.646505 | 5.2:+80134861 | MS.gene81359:CDS |
| ACGCCGCGGTCGAATTGTGG+TGG | 0.652143 | 5.2:+80135535 | MS.gene81359:CDS |
| TGAGGCCTTTAATTACAAGG+AGG | 0.704335 | 5.2:+80135053 | MS.gene81359:CDS |
| CTTCTTAACATGAGACGCCG+CGG | 0.740483 | 5.2:+80135521 | MS.gene81359:CDS |
| CAGCCACCACAATTCGACCG+CGG | 0.745630 | 5.2:-80135538 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAAAACAATATCAATT+AGG | - | chr5.2:80134985-80135004 | None:intergenic | 15.0% |
| !! | AGTATACATTTAAATTAAAG+AGG | + | chr5.2:80133984-80134003 | MS.gene81359:intron | 15.0% |
| !! | ATATGATTAAGTCTATTATA+AGG | + | chr5.2:80134402-80134421 | MS.gene81359:intron | 15.0% |
| !! | TAATGAGTTATTATATATGT+AGG | + | chr5.2:80134732-80134751 | MS.gene81359:intron | 15.0% |
| !!! | ACTTTTTTCTTTGTAAAATA+TGG | - | chr5.2:80134053-80134072 | None:intergenic | 15.0% |
| !!! | ATATTTTACAAAGAAAAAAG+TGG | + | chr5.2:80134052-80134071 | MS.gene81359:intron | 15.0% |
| !!! | CTTTAATTTAAATGTATACT+TGG | - | chr5.2:80133984-80134003 | None:intergenic | 15.0% |
| !! | AAACATCCAAATTTCAAAAA+AGG | + | chr5.2:80134526-80134545 | MS.gene81359:CDS | 20.0% |
| !! | ACTTGTATACAAAAATTAAC+AGG | + | chr5.2:80135146-80135165 | MS.gene81359:intron | 20.0% |
| !! | CTTGTATACAAAAATTAACA+GGG | + | chr5.2:80135147-80135166 | MS.gene81359:intron | 20.0% |
| !! | TAGAATACAATACTTACTTT+AGG | + | chr5.2:80135255-80135274 | MS.gene81359:intron | 20.0% |
| !! | TTTAGTATTCATTACAAAAG+AGG | - | chr5.2:80135398-80135417 | None:intergenic | 20.0% |
| !!! | TGTTTTCATGTCAATAAATA+AGG | + | chr5.2:80134999-80135018 | MS.gene81359:intron | 20.0% |
| ! | AAAATTGTGTCCAAAAACTT+TGG | - | chr5.2:80135680-80135699 | None:intergenic | 25.0% |
| ! | AAATTTCAAAAAAGGAGACT+TGG | + | chr5.2:80134534-80134553 | MS.gene81359:CDS | 25.0% |
| ! | ATGTTGAAGATATAGCTAAA+GGG | + | chr5.2:80135729-80135748 | MS.gene81359:CDS | 25.0% |
| ! | ATTCAAATCGGTTGTAAAAA+TGG | - | chr5.2:80134242-80134261 | None:intergenic | 25.0% |
| ! | TACAAAGAAAAAAGTGGTAT+TGG | + | chr5.2:80134058-80134077 | MS.gene81359:intron | 25.0% |
| ! | TATGTTGAAGATATAGCTAA+AGG | + | chr5.2:80135728-80135747 | MS.gene81359:CDS | 25.0% |
| ! | TTGAGCGATAAAATTCAAAT+CGG | - | chr5.2:80134254-80134273 | None:intergenic | 25.0% |
| ! | TTTAGGAAGTTGTAAACTAA+TGG | - | chr5.2:80133698-80133717 | None:intergenic | 25.0% |
| !! | AAATACATGTCTGTTTGTTT+TGG | - | chr5.2:80133664-80133683 | None:intergenic | 25.0% |
| !! | TCACTTATATCCAAAGTTTT+TGG | + | chr5.2:80135667-80135686 | MS.gene81359:CDS | 25.0% |
| !! | TGTTATTTGAACAACCAATT+TGG | + | chr5.2:80134009-80134028 | MS.gene81359:intron | 25.0% |
| !! | TTTTGGATATGATAAAACCA+CGG | - | chr5.2:80133934-80133953 | None:intergenic | 25.0% |
| !!! | AAGTCTCCTTTTTTGAAATT+TGG | - | chr5.2:80134535-80134554 | None:intergenic | 25.0% |
| !!! | ATATTTTGAAGACCAAGTTT+GGG | + | chr5.2:80135025-80135044 | MS.gene81359:CDS | 25.0% |
| !!! | ATTAAGTTTTTTATGCCTTG+AGG | - | chr5.2:80135593-80135612 | None:intergenic | 25.0% |
| AAGACATAATCTCCTTTCTT+AGG | - | chr5.2:80134804-80134823 | None:intergenic | 30.0% | |
| AAGCGAAAAGCTTTACTAAT+CGG | - | chr5.2:80135186-80135205 | None:intergenic | 30.0% | |
| AAGTATATGTCTATTCCTTC+AGG | - | chr5.2:80135467-80135486 | None:intergenic | 30.0% | |
| AAGTTGTAAACTAATGGTAG+AGG | - | chr5.2:80133692-80133711 | None:intergenic | 30.0% | |
| AATCCAGTATAATAGGAAAG+AGG | - | chr5.2:80134640-80134659 | None:intergenic | 30.0% | |
| ACCAAGTAATCCAGTATAAT+AGG | - | chr5.2:80134647-80134666 | None:intergenic | 30.0% | |
| ACGAATTATGTTGGAACTAA+GGG | + | chr5.2:80134361-80134380 | MS.gene81359:intron | 30.0% | |
| ACTTTATCTCTCTATTGCTA+TGG | - | chr5.2:80134092-80134111 | None:intergenic | 30.0% | |
| AGACATAATCTCCTTTCTTA+GGG | - | chr5.2:80134803-80134822 | None:intergenic | 30.0% | |
| ATATACTTTGACAATGTTGG+TGG | + | chr5.2:80135479-80135498 | MS.gene81359:CDS | 30.0% | |
| ATTATATATGTAGGTATGCC+TGG | + | chr5.2:80134741-80134760 | MS.gene81359:intron | 30.0% | |
| CAAATAAGTTGTCACCAAAT+TGG | - | chr5.2:80134026-80134045 | None:intergenic | 30.0% | |
| CTAATCTTAGCTGAGAAAAA+TGG | - | chr5.2:80135343-80135362 | None:intergenic | 30.0% | |
| GACATATACTTTGACAATGT+TGG | + | chr5.2:80135476-80135495 | MS.gene81359:CDS | 30.0% | |
| GTTCTGTTTCAATTGTTGAT+AGG | + | chr5.2:80135435-80135454 | MS.gene81359:intron | 30.0% | |
| TATGTGATTATCTCTTCTAG+AGG | + | chr5.2:80134431-80134450 | MS.gene81359:intron | 30.0% | |
| TCCTATTATACTGGATTACT+TGG | + | chr5.2:80134643-80134662 | MS.gene81359:CDS | 30.0% | |
| TGTTAATCATCAAGAACCTA+AGG | + | chr5.2:80135313-80135332 | MS.gene81359:intron | 30.0% | |
| TTGTTCCTCCTTGTAATTAA+AGG | - | chr5.2:80135061-80135080 | None:intergenic | 30.0% | |
| ! | ACACAATTTTGCCTTATGTT+AGG | + | chr5.2:80135690-80135709 | MS.gene81359:CDS | 30.0% |
| ! | AGGTTCTTGATGATTAACAT+CGG | - | chr5.2:80135312-80135331 | None:intergenic | 30.0% |
| ! | ATTAGTAAAGCTTTTCGCTT+AGG | + | chr5.2:80135186-80135205 | MS.gene81359:intron | 30.0% |
| ! | CACAATTTTGCCTTATGTTA+GGG | + | chr5.2:80135691-80135710 | MS.gene81359:CDS | 30.0% |
| ! | GATTTGAATTTTATCGCTCA+AGG | + | chr5.2:80134253-80134272 | MS.gene81359:intron | 30.0% |
| ! | TGAGAAAAATGGATTTCCTT+AGG | - | chr5.2:80135332-80135351 | None:intergenic | 30.0% |
| !! | AAGTGCTGGAAGTAAATATA+AGG | + | chr5.2:80134899-80134918 | MS.gene81359:CDS | 30.0% |
| !! | GATATTTTGAAGACCAAGTT+TGG | + | chr5.2:80135024-80135043 | MS.gene81359:CDS | 30.0% |
| !!! | GTTATTTTTGCCTGTTCTTT+TGG | - | chr5.2:80133788-80133807 | None:intergenic | 30.0% |
| AAATTAACAGGGCAATCCAA+AGG | + | chr5.2:80135158-80135177 | MS.gene81359:intron | 35.0% | |
| AATTAACAGGGCAATCCAAA+GGG | + | chr5.2:80135159-80135178 | MS.gene81359:intron | 35.0% | |
| ACTTACTGAATCTGGAGAAA+AGG | - | chr5.2:80133821-80133840 | None:intergenic | 35.0% | |
| ACTTCTTCAATGTTCCATCT+AGG | - | chr5.2:80135086-80135105 | None:intergenic | 35.0% | |
| AGAACAAGTGATCAACAAAC+AGG | + | chr5.2:80133609-80133628 | MS.gene81359:CDS | 35.0% | |
| ATATGGAGTATGCAAAGTGT+TGG | + | chr5.2:80134498-80134517 | MS.gene81359:CDS | 35.0% | |
| CATACTCCATATCCAACAAT+TGG | - | chr5.2:80134490-80134509 | None:intergenic | 35.0% | |
| CATTGTGTACTTACTGAATC+TGG | - | chr5.2:80133829-80133848 | None:intergenic | 35.0% | |
| CTGGAGAAAAGGAATAAAAG+AGG | - | chr5.2:80133810-80133829 | None:intergenic | 35.0% | |
| GACGAATTATGTTGGAACTA+AGG | + | chr5.2:80134360-80134379 | MS.gene81359:intron | 35.0% | |
| GGTCAACTAGCAAAATTGAT+GGG | + | chr5.2:80134861-80134880 | MS.gene81359:CDS | 35.0% | |
| GTACCTCTTTCCTATTATAC+TGG | + | chr5.2:80134634-80134653 | MS.gene81359:CDS | 35.0% | |
| GTCTTTATCTCTTCAGCATT+TGG | + | chr5.2:80134819-80134838 | MS.gene81359:CDS | 35.0% | |
| TATGAACTTGATGAACCTCA+AGG | + | chr5.2:80135575-80135594 | MS.gene81359:CDS | 35.0% | |
| TATGCAGGTTTCTATGAAGT+TGG | + | chr5.2:80134774-80134793 | MS.gene81359:CDS | 35.0% | |
| TGATAAAACCACGGCTAATT+TGG | - | chr5.2:80133925-80133944 | None:intergenic | 35.0% | |
| TGATGAGGCCTTTAATTACA+AGG | + | chr5.2:80135050-80135069 | MS.gene81359:CDS | 35.0% | |
| TGGTCAACTAGCAAAATTGA+TGG | + | chr5.2:80134860-80134879 | MS.gene81359:CDS | 35.0% | |
| TTGATGGGATGTTATGTTGT+TGG | + | chr5.2:80134876-80134895 | MS.gene81359:CDS | 35.0% | |
| ! | AAAAAAGGAGACTTGGTTTG+GGG | + | chr5.2:80134541-80134560 | MS.gene81359:CDS | 35.0% |
| ! | ATTTTGCCTTATGTTAGGGA+AGG | + | chr5.2:80135695-80135714 | MS.gene81359:CDS | 35.0% |
| ! | CAAAAAAGGAGACTTGGTTT+GGG | + | chr5.2:80134540-80134559 | MS.gene81359:CDS | 35.0% |
| ! | GAACTTCGCAACACTTATTT+TGG | - | chr5.2:80133951-80133970 | None:intergenic | 35.0% |
| ! | TCAAAAAAGGAGACTTGGTT+TGG | + | chr5.2:80134539-80134558 | MS.gene81359:CDS | 35.0% |
| ! | TTTTGCCTTATGTTAGGGAA+GGG | + | chr5.2:80135696-80135715 | MS.gene81359:CDS | 35.0% |
| !! | AGAAAAAAGTGGTATTGGCA+CGG | + | chr5.2:80134063-80134082 | MS.gene81359:intron | 35.0% |
| AAACCACGGCTAATTTGGAA+CGG | - | chr5.2:80133920-80133939 | None:intergenic | 40.0% | |
| AACATTGCTTCTAATGCAGC+TGG | - | chr5.2:80135767-80135786 | None:intergenic | 40.0% | |
| AGTTAAACTGTAACACCTCG+TGG | + | chr5.2:80134282-80134301 | MS.gene81359:intron | 40.0% | |
| ATAGCTAAAGGGATTGAGAG+TGG | + | chr5.2:80135740-80135759 | MS.gene81359:CDS | 40.0% | |
| ATCTTCCCTTCCCTAACATA+AGG | - | chr5.2:80135704-80135723 | None:intergenic | 40.0% | |
| ATGAGAGGAACCAAAAGAAC+AGG | + | chr5.2:80133775-80133794 | MS.gene81359:CDS | 40.0% | |
| CTAGCTTCAGACTACATAAC+TGG | + | chr5.2:80133634-80133653 | MS.gene81359:CDS | 40.0% | |
| CTTAGGACGACGAATTATGT+TGG | + | chr5.2:80134352-80134371 | MS.gene81359:intron | 40.0% | |
| GCATTAGAAGCAATGTTCAC+AGG | + | chr5.2:80135770-80135789 | MS.gene81359:CDS | 40.0% | |
| TAGCTAAAGGGATTGAGAGT+GGG | + | chr5.2:80135741-80135760 | MS.gene81359:CDS | 40.0% | |
| TCTCAGCCAATTGTTGGATA+TGG | + | chr5.2:80134481-80134500 | MS.gene81359:intron | 40.0% | |
| TCTTGTGATCCTTACATGAG+AGG | + | chr5.2:80133760-80133779 | MS.gene81359:CDS | 40.0% | |
| TGAGGCCTTTAATTACAAGG+AGG | + | chr5.2:80135053-80135072 | MS.gene81359:CDS | 40.0% | |
| TGTTTCTCTCAGCCAATTGT+TGG | + | chr5.2:80134475-80134494 | MS.gene81359:intron | 40.0% | |
| TTAAGAATGTTGTGTCCACG+AGG | - | chr5.2:80134300-80134319 | None:intergenic | 40.0% | |
| TTCATCTGTGCGAAAAGCTT+AGG | + | chr5.2:80134335-80134354 | MS.gene81359:intron | 40.0% | |
| TTTGATGAGGCTATCAGTCT+TGG | - | chr5.2:80134599-80134618 | None:intergenic | 40.0% | |
| ! | GTTGATAGGTACTTTCCTGA+AGG | + | chr5.2:80135449-80135468 | MS.gene81359:intron | 40.0% |
| ! | TGTTATGTTGTTGGAAGTGC+TGG | + | chr5.2:80134885-80134904 | MS.gene81359:CDS | 40.0% |
| !! | CAGCATGCTCAATTTTGATG+AGG | - | chr5.2:80134612-80134631 | None:intergenic | 40.0% |
| !! | GCTTCTTCTGAAGCATCTTT+AGG | - | chr5.2:80133715-80133734 | None:intergenic | 40.0% |
| !!! | CTTTTGGTTCCTCTCATGTA+AGG | - | chr5.2:80133772-80133791 | None:intergenic | 40.0% |
| !!! | TTTAGGCCTCACTTTTTGCT+GGG | + | chr5.2:80135272-80135291 | MS.gene81359:intron | 40.0% |
| AAGGAGGAACAAGACCTAGA+TGG | + | chr5.2:80135069-80135088 | MS.gene81359:CDS | 45.0% | |
| GATGCTGTACTCTTCCCATT+TGG | - | chr5.2:80134572-80134591 | None:intergenic | 45.0% | |
| GCTTTACTAATCGGTCCCTT+TGG | - | chr5.2:80135177-80135196 | None:intergenic | 45.0% | |
| TGCTTCAGAAGAAGCTGTGT+TGG | + | chr5.2:80133720-80133739 | MS.gene81359:CDS | 45.0% | |
| ! | ACGGCTAATTTGGAACGGAT+GGG | - | chr5.2:80133915-80133934 | None:intergenic | 45.0% |
| ! | ATGTTCACAGGCAAAAGTGC+TGG | + | chr5.2:80135782-80135801 | MS.gene81359:CDS | 45.0% |
| ! | GACCAAGTTTGGGTTTGATG+AGG | + | chr5.2:80135035-80135054 | MS.gene81359:CDS | 45.0% |
| !! | GAAGTTGGTGTCCCTAAGAA+AGG | + | chr5.2:80134789-80134808 | MS.gene81359:CDS | 45.0% |
| !! | TCTTCAGCATTTGGTGCAGT+TGG | + | chr5.2:80134828-80134847 | MS.gene81359:CDS | 45.0% |
| !!! | CTTTAGGCCTCACTTTTTGC+TGG | + | chr5.2:80135271-80135290 | MS.gene81359:intron | 45.0% |
| CATCAGCCCAGCAAAAAGTG+AGG | - | chr5.2:80135281-80135300 | None:intergenic | 50.0% | |
| CATCCGTTCCAAATTAGCCG+TGG | + | chr5.2:80133914-80133933 | MS.gene81359:intron | 50.0% | |
| CCTGCATAAGCAGTCATACC+AGG | - | chr5.2:80134762-80134781 | None:intergenic | 50.0% | |
| CCTGGTATGACTGCTTATGC+AGG | + | chr5.2:80134759-80134778 | MS.gene81359:CDS | 50.0% | |
| CTTCTTAACATGAGACGCCG+CGG | + | chr5.2:80135521-80135540 | MS.gene81359:CDS | 50.0% | |
| GCGGCGTCTCATGTTAAGAA+GGG | - | chr5.2:80135522-80135541 | None:intergenic | 50.0% | |
| GGCCTCATCAAACCCAAACT+TGG | - | chr5.2:80135040-80135059 | None:intergenic | 50.0% | |
| GGTGCAGTTGGTCAACTTGT+TGG | + | chr5.2:80134840-80134859 | MS.gene81359:CDS | 50.0% | |
| GGTTTGGGGAGTCACCAAAT+GGG | + | chr5.2:80134555-80134574 | MS.gene81359:CDS | 50.0% | |
| ! | CACGGCTAATTTGGAACGGA+TGG | - | chr5.2:80133916-80133935 | None:intergenic | 50.0% |
| ! | CGGCTAATTTGGAACGGATG+GGG | - | chr5.2:80133914-80133933 | None:intergenic | 50.0% |
| ! | GGCTAATTTGGAACGGATGG+GGG | - | chr5.2:80133913-80133932 | None:intergenic | 50.0% |
| ! | TGGTTTGGGGAGTCACCAAA+TGG | + | chr5.2:80134554-80134573 | MS.gene81359:CDS | 50.0% |
| CGCGGCGTCTCATGTTAAGA+AGG | - | chr5.2:80135523-80135542 | None:intergenic | 55.0% | |
| CAGCCACCACAATTCGACCG+CGG | - | chr5.2:80135541-80135560 | None:intergenic | 60.0% | |
| ACGCCGCGGTCGAATTGTGG+TGG | + | chr5.2:80135535-80135554 | MS.gene81359:CDS | 65.0% | |
| CGCGGTCGAATTGTGGTGGC+TGG | + | chr5.2:80135539-80135558 | MS.gene81359:CDS | 65.0% | |
| GAGACGCCGCGGTCGAATTG+TGG | + | chr5.2:80135532-80135551 | MS.gene81359:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 80133604 | 80135835 | 80133604 | ID=MS.gene81359 |
| chr5.2 | mRNA | 80133604 | 80135835 | 80133604 | ID=MS.gene81359.t1;Parent=MS.gene81359 |
| chr5.2 | exon | 80133604 | 80133834 | 80133604 | ID=MS.gene81359.t1.exon1;Parent=MS.gene81359.t1 |
| chr5.2 | CDS | 80133604 | 80133834 | 80133604 | ID=cds.MS.gene81359.t1;Parent=MS.gene81359.t1 |
| chr5.2 | exon | 80134487 | 80134664 | 80134487 | ID=MS.gene81359.t1.exon2;Parent=MS.gene81359.t1 |
| chr5.2 | CDS | 80134487 | 80134664 | 80134487 | ID=cds.MS.gene81359.t1;Parent=MS.gene81359.t1 |
| chr5.2 | exon | 80134754 | 80134920 | 80134754 | ID=MS.gene81359.t1.exon3;Parent=MS.gene81359.t1 |
| chr5.2 | CDS | 80134754 | 80134920 | 80134754 | ID=cds.MS.gene81359.t1;Parent=MS.gene81359.t1 |
| chr5.2 | exon | 80135021 | 80135103 | 80135021 | ID=MS.gene81359.t1.exon4;Parent=MS.gene81359.t1 |
| chr5.2 | CDS | 80135021 | 80135103 | 80135021 | ID=cds.MS.gene81359.t1;Parent=MS.gene81359.t1 |
| chr5.2 | exon | 80135457 | 80135835 | 80135457 | ID=MS.gene81359.t1.exon5;Parent=MS.gene81359.t1 |
| chr5.2 | CDS | 80135457 | 80135835 | 80135457 | ID=cds.MS.gene81359.t1;Parent=MS.gene81359.t1 |
| Gene Sequence |
| Protein sequence |
