Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86563.t1 | XP_003612345.1 | 97 | 529 | 16 | 0 | 1 | 529 | 1 | 529 | 8.60E-305 | 1055.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86563.t1 | P24095 | 70.2 | 531 | 151 | 4 | 1 | 529 | 1 | 526 | 4.3e-220 | 765.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86563.t1 | G7K036 | 97.0 | 529 | 16 | 0 | 1 | 529 | 1 | 529 | 6.2e-305 | 1055.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene86563 | 0.810305 | 1.23E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene86563 | 0.812218 | 4.74E-51 | -1.69E-46 |
| MS.gene051844 | MS.gene86563 | 0.803681 | 3.10E-49 | -1.69E-46 |
| MS.gene051907 | MS.gene86563 | 0.810479 | 1.13E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene86563 | 0.820445 | 6.83E-53 | -1.69E-46 |
| MS.gene05240 | MS.gene86563 | 0.815647 | 8.30E-52 | -1.69E-46 |
| MS.gene052606 | MS.gene86563 | 0.811648 | 6.30E-51 | -1.69E-46 |
| MS.gene052702 | MS.gene86563 | 0.814447 | 1.53E-51 | -1.69E-46 |
| MS.gene052706 | MS.gene86563 | 0.806755 | 7.05E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene86563 | 0.811536 | 6.67E-51 | -1.69E-46 |
| MS.gene054146 | MS.gene86563 | 0.813003 | 3.19E-51 | -1.69E-46 |
| MS.gene054277 | MS.gene86563 | 0.816675 | 4.89E-52 | -1.69E-46 |
| MS.gene054421 | MS.gene86563 | 0.813854 | 2.07E-51 | -1.69E-46 |
| MS.gene054742 | MS.gene86563 | 0.810887 | 9.22E-51 | -1.69E-46 |
| MS.gene054884 | MS.gene86563 | 0.821128 | 4.76E-53 | -1.69E-46 |
| MS.gene056218 | MS.gene86563 | 0.802909 | 4.49E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene86563 | 0.826366 | 2.82E-54 | -1.69E-46 |
| MS.gene056591 | MS.gene86563 | 0.826184 | 3.12E-54 | -1.69E-46 |
| MS.gene056697 | MS.gene86563 | 0.820291 | 7.41E-53 | -1.69E-46 |
| MS.gene056748 | MS.gene86563 | 0.823966 | 1.04E-53 | -1.69E-46 |
| MS.gene056856 | MS.gene86563 | 0.848144 | 7.39E-60 | -1.69E-46 |
| MS.gene057544 | MS.gene86563 | 0.804858 | 1.76E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene86563 | 0.837936 | 3.87E-57 | -1.69E-46 |
| MS.gene058838 | MS.gene86563 | -0.803397 | 3.55E-49 | -1.69E-46 |
| MS.gene059953 | MS.gene86563 | 0.840391 | 8.95E-58 | -1.69E-46 |
| MS.gene059955 | MS.gene86563 | 0.830031 | 3.69E-55 | -1.69E-46 |
| MS.gene060087 | MS.gene86563 | 0.813253 | 2.81E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86563.t1 | MTR_5g024020 | 98.677 | 529 | 7 | 0 | 1 | 529 | 1 | 529 | 0.0 | 1081 |
| MS.gene86563.t1 | MTR_5g024020 | 92.060 | 529 | 6 | 1 | 1 | 529 | 1 | 493 | 0.0 | 995 |
| MS.gene86563.t1 | MTR_8g018735 | 81.664 | 529 | 95 | 2 | 1 | 529 | 1 | 527 | 0.0 | 894 |
| MS.gene86563.t1 | MTR_8g018730 | 80.340 | 529 | 101 | 2 | 1 | 529 | 1 | 526 | 0.0 | 893 |
| MS.gene86563.t1 | MTR_8g018735 | 81.664 | 529 | 95 | 2 | 1 | 529 | 1 | 527 | 0.0 | 891 |
| MS.gene86563.t1 | MTR_8g018730 | 75.047 | 529 | 99 | 3 | 1 | 529 | 1 | 496 | 0.0 | 821 |
| MS.gene86563.t1 | MTR_2g099560 | 69.376 | 529 | 150 | 7 | 3 | 529 | 7 | 525 | 0.0 | 753 |
| MS.gene86563.t1 | MTR_2g099570 | 68.809 | 529 | 151 | 6 | 3 | 529 | 7 | 523 | 0.0 | 738 |
| MS.gene86563.t1 | MTR_8g018420 | 64.615 | 520 | 171 | 5 | 12 | 529 | 9 | 517 | 0.0 | 699 |
| MS.gene86563.t1 | MTR_3g081130 | 64.728 | 533 | 171 | 9 | 1 | 529 | 1 | 520 | 0.0 | 694 |
| MS.gene86563.t1 | MTR_8g018570 | 61.394 | 531 | 195 | 7 | 3 | 529 | 7 | 531 | 0.0 | 680 |
| MS.gene86563.t1 | MTR_8g018550 | 63.585 | 530 | 183 | 7 | 3 | 529 | 7 | 529 | 0.0 | 679 |
| MS.gene86563.t1 | MTR_8g018430 | 62.261 | 522 | 187 | 6 | 10 | 529 | 9 | 522 | 0.0 | 678 |
| MS.gene86563.t1 | MTR_8g020990 | 61.626 | 529 | 195 | 6 | 3 | 529 | 7 | 529 | 0.0 | 674 |
| MS.gene86563.t1 | MTR_8g018690 | 60.870 | 529 | 196 | 5 | 3 | 529 | 7 | 526 | 0.0 | 672 |
| MS.gene86563.t1 | MTR_8g018510 | 61.568 | 523 | 192 | 7 | 11 | 529 | 13 | 530 | 0.0 | 658 |
| MS.gene86563.t1 | MTR_8g018520 | 60.566 | 530 | 199 | 7 | 3 | 529 | 7 | 529 | 0.0 | 650 |
| MS.gene86563.t1 | MTR_3g081130 | 66.814 | 452 | 141 | 6 | 82 | 529 | 2 | 448 | 0.0 | 628 |
| MS.gene86563.t1 | MTR_8g018690 | 57.845 | 529 | 192 | 6 | 3 | 529 | 7 | 506 | 0.0 | 624 |
| MS.gene86563.t1 | MTR_8g018450 | 54.095 | 525 | 192 | 11 | 10 | 529 | 9 | 489 | 0.0 | 555 |
| MS.gene86563.t1 | MTR_1g083020 | 52.425 | 536 | 216 | 10 | 6 | 529 | 12 | 520 | 0.0 | 540 |
| MS.gene86563.t1 | MTR_7g113410 | 51.095 | 548 | 223 | 13 | 1 | 529 | 8 | 529 | 1.19e-174 | 515 |
| MS.gene86563.t1 | MTR_1g104650 | 50.278 | 539 | 228 | 12 | 5 | 529 | 1 | 513 | 2.81e-173 | 511 |
| MS.gene86563.t1 | MTR_8g018590 | 51.660 | 482 | 185 | 11 | 65 | 529 | 35 | 485 | 5.42e-157 | 468 |
| MS.gene86563.t1 | MTR_8g018620 | 47.893 | 522 | 207 | 12 | 12 | 529 | 9 | 469 | 1.25e-154 | 461 |
| MS.gene86563.t1 | MTR_8g018650 | 47.985 | 521 | 207 | 12 | 12 | 529 | 9 | 468 | 1.79e-154 | 461 |
| MS.gene86563.t1 | MTR_8g018730 | 83.673 | 245 | 40 | 0 | 285 | 529 | 2 | 246 | 2.89e-145 | 430 |
| MS.gene86563.t1 | MTR_8g020970 | 41.942 | 484 | 261 | 11 | 57 | 529 | 113 | 587 | 4.28e-115 | 355 |
| MS.gene86563.t1 | MTR_8g020970 | 41.942 | 484 | 261 | 11 | 57 | 529 | 113 | 587 | 1.57e-112 | 355 |
| MS.gene86563.t1 | MTR_8g011340 | 41.212 | 495 | 255 | 15 | 56 | 529 | 46 | 525 | 5.56e-108 | 341 |
| MS.gene86563.t1 | MTR_3g479460 | 36.364 | 528 | 297 | 14 | 18 | 529 | 58 | 562 | 5.10e-101 | 325 |
| MS.gene86563.t1 | MTR_4g066170 | 37.269 | 542 | 299 | 16 | 4 | 529 | 48 | 564 | 5.29e-101 | 325 |
| MS.gene86563.t1 | MTR_3g079450 | 34.483 | 522 | 304 | 13 | 24 | 529 | 62 | 561 | 6.60e-96 | 305 |
| MS.gene86563.t1 | MTR_3g079450 | 34.483 | 522 | 304 | 13 | 24 | 529 | 62 | 561 | 1.75e-93 | 305 |
| MS.gene86563.t1 | MTR_8g080230 | 37.924 | 501 | 273 | 17 | 50 | 529 | 92 | 575 | 1.78e-92 | 302 |
| MS.gene86563.t1 | MTR_3g079420 | 39.767 | 430 | 235 | 10 | 113 | 529 | 106 | 524 | 4.60e-92 | 300 |
| MS.gene86563.t1 | MTR_4g088810 | 39.220 | 436 | 224 | 13 | 104 | 529 | 151 | 555 | 4.13e-90 | 295 |
| MS.gene86563.t1 | MTR_6g452500 | 38.732 | 284 | 149 | 11 | 254 | 529 | 14 | 280 | 1.58e-41 | 158 |
| MS.gene86563.t1 | MTR_8g021020 | 61.538 | 65 | 21 | 1 | 469 | 529 | 28 | 92 | 9.48e-19 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86563.t1 | AT1G55020 | 52.720 | 533 | 209 | 11 | 10 | 529 | 18 | 520 | 0.0 | 532 |
| MS.gene86563.t1 | AT3G22400 | 48.885 | 538 | 231 | 12 | 10 | 529 | 32 | 543 | 2.23e-165 | 492 |
| MS.gene86563.t1 | AT1G17420 | 41.408 | 483 | 262 | 11 | 57 | 529 | 108 | 579 | 1.62e-107 | 342 |
| MS.gene86563.t1 | AT1G72520 | 40.580 | 483 | 267 | 10 | 57 | 529 | 114 | 586 | 3.47e-105 | 336 |
| MS.gene86563.t1 | AT3G45140 | 39.571 | 513 | 270 | 19 | 30 | 529 | 70 | 555 | 3.13e-102 | 328 |
| MS.gene86563.t1 | AT3G45140 | 43.529 | 425 | 212 | 15 | 118 | 529 | 4 | 413 | 7.67e-101 | 321 |
| MS.gene86563.t1 | AT1G67560 | 39.381 | 485 | 256 | 14 | 64 | 529 | 111 | 576 | 1.06e-88 | 292 |
Find 121 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATTGGGATGCTGATTT+TGG | 0.190953 | 5.1:+14656989 | MS.gene86563:CDS |
| TTGAATTTGTTTGCAATTCA+TGG | 0.215771 | 5.1:+14657107 | MS.gene86563:CDS |
| CCACAGTGCCCTTGATCTTT+TGG | 0.235465 | 5.1:-14654978 | None:intergenic |
| CATTTACCATTCACTTTGAT+TGG | 0.244250 | 5.1:+14656975 | MS.gene86563:CDS |
| TGGTCGAAAACCAACTAAAA+AGG | 0.263615 | 5.1:+14657548 | MS.gene86563:CDS |
| GAGTGGTAGATTTAGTTAGT+AGG | 0.298216 | 5.1:-14659123 | None:intergenic |
| AGATGTTTGGCATATTTGAT+AGG | 0.330603 | 5.1:+14654947 | None:intergenic |
| CTTATGGAACAGGCACTTAA+TGG | 0.333183 | 5.1:+14658801 | MS.gene86563:intron |
| GGATTTGGAGCTTACATCAT+TGG | 0.341118 | 5.1:-14657173 | None:intergenic |
| TCTTGTCTGTAGAAGACTAA+TGG | 0.350358 | 5.1:-14657357 | None:intergenic |
| CATCCAAATGGTGTTAAGTA+TGG | 0.355834 | 5.1:+14658975 | MS.gene86563:CDS |
| GACGGTGCTACTGCCTTCTT+AGG | 0.359878 | 5.1:+14655120 | MS.gene86563:CDS |
| GTTCAATACCACCTTCAAAT+AGG | 0.363395 | 5.1:-14657876 | None:intergenic |
| GCACCATACTTAACACCATT+TGG | 0.363952 | 5.1:-14658978 | None:intergenic |
| ATTTGAAACTTACTTGTAGA+AGG | 0.370231 | 5.1:-14658330 | None:intergenic |
| ACGTTAGATATTGCTGTCTA+TGG | 0.376114 | 5.1:+14658614 | MS.gene86563:CDS |
| TGATAGTACAATTTGGCTAT+TGG | 0.379351 | 5.1:+14659037 | MS.gene86563:CDS |
| TGGATGACTGACGAAGAATT+TGG | 0.388201 | 5.1:+14658268 | MS.gene86563:CDS |
| TCGAAGCTATCAAACTCATT+TGG | 0.389705 | 5.1:-14657841 | None:intergenic |
| CAGTCCCTTACCAGTCCTTA+AGG | 0.399613 | 5.1:+14657924 | MS.gene86563:CDS |
| TCATCTGACTTCCTTACATA+TGG | 0.412674 | 5.1:+14657751 | MS.gene86563:CDS |
| GGCAGCATCAAGAATGTTCC+CGG | 0.417139 | 5.1:-14655073 | None:intergenic |
| TGTCCTAGTTGCATAAGCTT+TGG | 0.418902 | 5.1:-14658892 | None:intergenic |
| ATGTGGTAAACTCAACTCTA+TGG | 0.424161 | 5.1:-14658955 | None:intergenic |
| AATTCAACGGATTCACGATT+GGG | 0.433228 | 5.1:-14657091 | None:intergenic |
| AAGGTGTTGATAGTACAATT+TGG | 0.435084 | 5.1:+14659030 | MS.gene86563:CDS |
| AAGCTTGCTCGTCCAGTCCT+TGG | 0.441085 | 5.1:+14657486 | MS.gene86563:CDS |
| AAGAAGACCACCTTGTTTGA+CGG | 0.441487 | 5.1:-14655043 | None:intergenic |
| AGTGGTAGATTTAGTTAGTA+GGG | 0.447614 | 5.1:-14659122 | None:intergenic |
| GTTCCAAGAGATGAAAACTT+TGG | 0.447882 | 5.1:+14657718 | MS.gene86563:CDS |
| ATTTACCATTCACTTTGATT+GGG | 0.449296 | 5.1:+14656976 | MS.gene86563:CDS |
| CAGTGCGGAAAATTTCCTTA+AGG | 0.449942 | 5.1:-14657939 | None:intergenic |
| CTATCAACACCTTGGTCTGC+AGG | 0.450678 | 5.1:-14659020 | None:intergenic |
| CTGCCGGCAGCTTGGTCGGC+GGG | 0.451570 | 5.1:+14655091 | MS.gene86563:CDS |
| GCAAATGGCAAGGGATTAGT+TGG | 0.452072 | 5.1:+14656890 | MS.gene86563:intron |
| GCTCCCAAGGTTGGTAGAGT+GGG | 0.452917 | 5.1:-14656941 | None:intergenic |
| GAACAGCTGGAGATTAATCT+AGG | 0.454212 | 5.1:+14658662 | MS.gene86563:CDS |
| TTCCTTATGTAAAATGCTCC+TGG | 0.457180 | 5.1:-14657016 | None:intergenic |
| TCTTGATGCTGCCGGCAGCT+TGG | 0.457862 | 5.1:+14655083 | MS.gene86563:CDS |
| TGCATCTTGTCTTGCTCCCA+AGG | 0.467682 | 5.1:-14656954 | None:intergenic |
| GCAAGCTTGACATCTTCATC+TGG | 0.469750 | 5.1:-14657471 | None:intergenic |
| TTTGGAAGAGAGATGGTTGC+TGG | 0.470580 | 5.1:+14658286 | MS.gene86563:CDS |
| CTTGCTCGTCCAGTCCTTGG+AGG | 0.472483 | 5.1:+14657489 | MS.gene86563:CDS |
| AAATTCAACGGATTCACGAT+TGG | 0.474517 | 5.1:-14657092 | None:intergenic |
| GGTGGTCTTCTTGATGCTGC+CGG | 0.474897 | 5.1:+14655054 | MS.gene86563:CDS |
| CTTCTAACCCTTCGAGGGTA+AGG | 0.480584 | 5.1:-14657525 | None:intergenic |
| GATGTTTGGCATATTTGATA+GGG | 0.480663 | 5.1:+14654948 | None:intergenic |
| AATTTCCTTAAGGACTGGTA+AGG | 0.482665 | 5.1:-14657929 | None:intergenic |
| TCTTGTCTTGCTCCCAAGGT+TGG | 0.483250 | 5.1:-14656950 | None:intergenic |
| CGACCACTTCTAACCCTTCG+AGG | 0.485068 | 5.1:-14657531 | None:intergenic |
| GGGAACATTCTTGATGCTGC+CGG | 0.486249 | 5.1:+14655075 | MS.gene86563:CDS |
| ACCAATGGCTCATGAGTTGA+TGG | 0.487070 | 5.1:-14659094 | None:intergenic |
| TACTGGACAACGAAAAGAAT+GGG | 0.494054 | 5.1:+14657407 | MS.gene86563:CDS |
| TACAATTTGGCTATTGGCCA+AGG | 0.495798 | 5.1:+14659043 | MS.gene86563:CDS |
| TGCTCCCAAGGTTGGTAGAG+TGG | 0.496348 | 5.1:-14656942 | None:intergenic |
| CGGAAAATTTCCTTAAGGAC+TGG | 0.497528 | 5.1:-14657934 | None:intergenic |
| GTGGTCTTCTTGATGCTGCC+GGG | 0.498077 | 5.1:+14655055 | MS.gene86563:CDS |
| TATGATGTCTACAATGATCT+TGG | 0.499215 | 5.1:+14657444 | MS.gene86563:CDS |
| GTCCCCACTCTACCAACCTT+GGG | 0.499236 | 5.1:+14656938 | MS.gene86563:CDS |
| AGGTGGGCTCACAGTAGAAA+AGG | 0.500073 | 5.1:+14658682 | MS.gene86563:CDS |
| AATCTAAGAGGAGATGGTAC+TGG | 0.504050 | 5.1:+14657390 | MS.gene86563:CDS |
| GGATCATAGCCAAAAGATCA+AGG | 0.507959 | 5.1:+14654969 | MS.gene86563:CDS |
| GAAGAATTGCAAAATCTAAG+AGG | 0.508305 | 5.1:+14657378 | MS.gene86563:CDS |
| GTGCTAGACCCTCCAAGGAC+TGG | 0.510390 | 5.1:-14657498 | None:intergenic |
| ATTTACAATTACATGAGCCT+TGG | 0.514004 | 5.1:-14659060 | None:intergenic |
| AGCATCCCAATCAAAGTGAA+TGG | 0.517285 | 5.1:-14656981 | None:intergenic |
| GATGCTGCCGGCAGCTTGGT+CGG | 0.520219 | 5.1:+14655087 | MS.gene86563:CDS |
| AATGGAGCTGGTGTTTGACT+TGG | 0.524882 | 5.1:-14657339 | None:intergenic |
| TGTCCCCACTCTACCAACCT+TGG | 0.528094 | 5.1:+14656937 | MS.gene86563:CDS |
| ACCATCAACTCATGAGCCAT+TGG | 0.532250 | 5.1:+14659093 | MS.gene86563:CDS |
| CGAAGAATTTGGAAGAGAGA+TGG | 0.533979 | 5.1:+14658279 | MS.gene86563:CDS |
| AGATACGTTCCGACCTAAGA+AGG | 0.534895 | 5.1:-14655133 | None:intergenic |
| ATGCCAAAGCTTATGCAACT+AGG | 0.537181 | 5.1:+14658889 | MS.gene86563:CDS |
| AGATGACAAACCATCTGTCT+TGG | 0.539689 | 5.1:-14655175 | None:intergenic |
| TTGAGTTTACCACATCCAAA+TGG | 0.542511 | 5.1:+14658963 | MS.gene86563:CDS |
| TACTTAACACCATTTGGATG+TGG | 0.549004 | 5.1:-14658972 | None:intergenic |
| GACCACTTCTAACCCTTCGA+GGG | 0.549674 | 5.1:-14657530 | None:intergenic |
| TATCCCGCCGACCAAGCTGC+CGG | 0.549835 | 5.1:-14655094 | None:intergenic |
| TTGCAAAATCTAAGAGGAGA+TGG | 0.549962 | 5.1:+14657384 | MS.gene86563:CDS |
| TTGGTCGGCGGGATAATTGA+CGG | 0.557397 | 5.1:+14655102 | MS.gene86563:CDS |
| TGAATTGCAAACAAATTCAA+CGG | 0.559629 | 5.1:-14657104 | None:intergenic |
| AGCTGGAGATTAATCTAGGT+GGG | 0.562396 | 5.1:+14658666 | MS.gene86563:CDS |
| GTGCTACTGCCTTCTTAGGT+CGG | 0.564557 | 5.1:+14655124 | MS.gene86563:CDS |
| CAACTCATGAGCCATTGGTA+TGG | 0.565340 | 5.1:+14659098 | MS.gene86563:CDS |
| GTTAGTAGGGGCCATACCAA+TGG | 0.566899 | 5.1:-14659109 | None:intergenic |
| TTGCTCGTCCAGTCCTTGGA+GGG | 0.571582 | 5.1:+14657490 | MS.gene86563:CDS |
| ATTTCCTTAAGGACTGGTAA+GGG | 0.573930 | 5.1:-14657928 | None:intergenic |
| AAGATTACAGATTTAAACAA+AGG | 0.575473 | 5.1:-14657802 | None:intergenic |
| ATCAGTGCTACCAAGACAGA+TGG | 0.579981 | 5.1:+14655165 | MS.gene86563:CDS |
| GCTGCCGGCAGCTTGGTCGG+CGG | 0.581708 | 5.1:+14655090 | MS.gene86563:CDS |
| AAACTCAACTCTATGGCCAC+TGG | 0.582518 | 5.1:-14658948 | None:intergenic |
| GCACTCATCCTTACCCTCGA+AGG | 0.587455 | 5.1:+14657517 | MS.gene86563:CDS |
| GCTGTAACGTCCGTCAAACA+AGG | 0.587930 | 5.1:+14655033 | MS.gene86563:CDS |
| ATCATCTTGCCTGCAGACCA+AGG | 0.588962 | 5.1:+14659011 | MS.gene86563:CDS |
| CTGTAGAAGACTAATGGAGC+TGG | 0.594388 | 5.1:-14657351 | None:intergenic |
| CCTCTGATTACATGTGGTGG+TGG | 0.595383 | 5.1:-14657985 | None:intergenic |
| CACTCATCCTTACCCTCGAA+GGG | 0.596982 | 5.1:+14657518 | MS.gene86563:CDS |
| GTACTGGACAACGAAAAGAA+TGG | 0.597403 | 5.1:+14657406 | MS.gene86563:CDS |
| CTTGGAACATACATCACACC+TGG | 0.601033 | 5.1:-14657703 | None:intergenic |
| GATGAGTGCTAGACCCTCCA+AGG | 0.604496 | 5.1:-14657503 | None:intergenic |
| GATCATAGCCAAAAGATCAA+GGG | 0.615451 | 5.1:+14654970 | MS.gene86563:CDS |
| TGTAGAAGGCGAATCACACA+AGG | 0.616729 | 5.1:-14658316 | None:intergenic |
| CAGCTGGAGATTAATCTAGG+TGG | 0.616897 | 5.1:+14658665 | MS.gene86563:CDS |
| TTATAGTTAGCAAATCTGCA+TGG | 0.622128 | 5.1:+14658248 | MS.gene86563:intron |
| AAATTGTACTATCAACACCT+TGG | 0.634160 | 5.1:-14659028 | None:intergenic |
| TACCCTCGAAGGGTTAGAAG+TGG | 0.635885 | 5.1:+14657528 | MS.gene86563:CDS |
| CTCCCAAGGTTGGTAGAGTG+GGG | 0.636848 | 5.1:-14656940 | None:intergenic |
| GTGGTAGATTTAGTTAGTAG+GGG | 0.649663 | 5.1:-14659121 | None:intergenic |
| CCACCACCACATGTAATCAG+AGG | 0.659952 | 5.1:+14657985 | MS.gene86563:CDS |
| GAAGTGCGTGACCTATTTGA+AGG | 0.661942 | 5.1:+14657865 | MS.gene86563:CDS |
| TGATGGAACATTGAAACCAG+TGG | 0.668935 | 5.1:+14658932 | MS.gene86563:CDS |
| CCAAAAGATCAAGGGCACTG+TGG | 0.697540 | 5.1:+14654978 | MS.gene86563:CDS |
| GATCCTAAAAGTGAGAGACC+AGG | 0.704866 | 5.1:+14657685 | MS.gene86563:intron |
| GTACCTCTGATTACATGTGG+TGG | 0.712492 | 5.1:-14657988 | None:intergenic |
| GTAACGTCCGTCAAACAAGG+TGG | 0.717170 | 5.1:+14655036 | MS.gene86563:CDS |
| AATGTACCTCTGATTACATG+TGG | 0.724970 | 5.1:-14657991 | None:intergenic |
| GTGCGTGACCTATTTGAAGG+TGG | 0.729776 | 5.1:+14657868 | MS.gene86563:CDS |
| TAGGTCGGAACGTATCTATG+CGG | 0.737165 | 5.1:+14655139 | MS.gene86563:CDS |
| GGACTTGTTCACCATCAGTG+CGG | 0.739041 | 5.1:-14657954 | None:intergenic |
| GTAGAAGGCGAATCACACAA+GGG | 0.752151 | 5.1:-14658315 | None:intergenic |
| CATGTGGTGGTGGAAACTTG+AGG | 0.782802 | 5.1:-14657975 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAATTATTATATTTTT+TGG | - | chr5.1:14655780-14655799 | None:intergenic | 0.0% |
| !! | TAGATAAAAAAATATATTAG+TGG | - | chr5.1:14658433-14658452 | None:intergenic | 10.0% |
| !!! | ATAGTTAACTTTTTTAATTA+AGG | - | chr5.1:14657197-14657216 | None:intergenic | 10.0% |
| !!! | CATTGTATTAAATTATTTTT+TGG | + | chr5.1:14658570-14658589 | MS.gene86563:intron | 10.0% |
| !!! | TGATTTAAAGTTTAATTAAA+AGG | - | chr5.1:14655719-14655738 | None:intergenic | 10.0% |
| !! | ACATAAAAGTCATTATTAAT+TGG | + | chr5.1:14658732-14658751 | MS.gene86563:intron | 15.0% |
| !! | GAGTTAAAAATATTAAATTG+TGG | - | chr5.1:14658546-14658565 | None:intergenic | 15.0% |
| !!! | AACTTTTTTAATTAAGGATT+TGG | - | chr5.1:14657191-14657210 | None:intergenic | 15.0% |
| !!! | AATTGTTCCATTTTAATTTT+TGG | + | chr5.1:14657244-14657263 | MS.gene86563:intron | 15.0% |
| !!! | ACTTTACTATTTGATAATTT+TGG | + | chr5.1:14656293-14656312 | MS.gene86563:intron | 15.0% |
| !!! | TAAAGTAATCCTTTTTTAAA+CGG | + | chr5.1:14656149-14656168 | MS.gene86563:intron | 15.0% |
| !! | AAAACCCTAAACATTAAAAA+AGG | - | chr5.1:14656217-14656236 | None:intergenic | 20.0% |
| !! | AAACCCTAAACATTAAAAAA+GGG | - | chr5.1:14656216-14656235 | None:intergenic | 20.0% |
| !! | AAACTATCCAAATATTACAT+TGG | - | chr5.1:14656372-14656391 | None:intergenic | 20.0% |
| !! | AAATATTAAATTGTGGAATG+TGG | - | chr5.1:14658539-14658558 | None:intergenic | 20.0% |
| !! | AAGATTACAGATTTAAACAA+AGG | - | chr5.1:14657805-14657824 | None:intergenic | 20.0% |
| !! | AATAATTTGATAGAAACTAG+TGG | + | chr5.1:14656052-14656071 | MS.gene86563:intron | 20.0% |
| !! | AGTGATTGAAATTATACTTA+TGG | + | chr5.1:14658785-14658804 | MS.gene86563:intron | 20.0% |
| !! | ATGTAATATTTGGATAGTTT+AGG | + | chr5.1:14656372-14656391 | MS.gene86563:intron | 20.0% |
| !! | CAAAGATATAAATATTGCAT+TGG | - | chr5.1:14658112-14658131 | None:intergenic | 20.0% |
| !! | CAATTTCAAAAACTACAAAA+AGG | + | chr5.1:14657135-14657154 | MS.gene86563:CDS | 20.0% |
| !! | CATCCATTCTTAAAAAAAAT+AGG | + | chr5.1:14656002-14656021 | MS.gene86563:intron | 20.0% |
| !! | TAACATATTCCAACAAATAA+AGG | - | chr5.1:14656862-14656881 | None:intergenic | 20.0% |
| !! | TATAGAGCCAAAAATTAAAA+TGG | - | chr5.1:14657254-14657273 | None:intergenic | 20.0% |
| !! | TTGAATAAACAAATTCAAGT+AGG | - | chr5.1:14656093-14656112 | None:intergenic | 20.0% |
| !! | TTGAATAAACGTAAATAACT+AGG | - | chr5.1:14655204-14655223 | None:intergenic | 20.0% |
| !! | TTTCTATCCAATGTAATATT+TGG | + | chr5.1:14656362-14656381 | MS.gene86563:intron | 20.0% |
| !!! | AAAAAATTACCCTTTTTAGT+TGG | - | chr5.1:14657561-14657580 | None:intergenic | 20.0% |
| !!! | AAAAAATTGTGTTGTTAGTA+AGG | + | chr5.1:14655873-14655892 | MS.gene86563:intron | 20.0% |
| !!! | ACACAATTTTTTTTTCCAAT+AGG | - | chr5.1:14655865-14655884 | None:intergenic | 20.0% |
| !!! | ACACCTATTTTTTTTAAGAA+TGG | - | chr5.1:14656008-14656027 | None:intergenic | 20.0% |
| !!! | AGACAAATATTTTATGCTTT+TGG | + | chr5.1:14655252-14655271 | MS.gene86563:intron | 20.0% |
| !!! | ATAGACTACATTTAAAACTT+TGG | - | chr5.1:14656791-14656810 | None:intergenic | 20.0% |
| !!! | ATGATTTTATTCCATATGTA+AGG | - | chr5.1:14657765-14657784 | None:intergenic | 20.0% |
| !!! | CAATGATATATGTAAGTTTT+AGG | + | chr5.1:14655969-14655988 | MS.gene86563:intron | 20.0% |
| !!! | CACAATTTTTTTTTCCAATA+GGG | - | chr5.1:14655864-14655883 | None:intergenic | 20.0% |
| !!! | CTATTTTTTTTAAGAATGGA+TGG | - | chr5.1:14656004-14656023 | None:intergenic | 20.0% |
| !!! | GTATTAAATTATTTTTTGGC+AGG | + | chr5.1:14658574-14658593 | MS.gene86563:intron | 20.0% |
| !!! | TATGTTATTTTTGTAGCAAA+TGG | + | chr5.1:14656875-14656894 | MS.gene86563:intron | 20.0% |
| !!! | TGTCTCTTTTGAAATATATA+TGG | - | chr5.1:14655237-14655256 | None:intergenic | 20.0% |
| !!! | TTTTAGAACTTCAATTAATG+AGG | + | chr5.1:14655626-14655645 | MS.gene86563:intron | 20.0% |
| ! | AAATATGAGAGTCAATAATG+TGG | + | chr5.1:14657606-14657625 | MS.gene86563:intron | 25.0% |
| ! | AACCCTAAACATTAAAAAAG+GGG | - | chr5.1:14656215-14656234 | None:intergenic | 25.0% |
| ! | AACTGAAGATTGAATCTTAA+CGG | + | chr5.1:14655666-14655685 | MS.gene86563:intron | 25.0% |
| ! | AAGCACATGTTAAAAACAAT+TGG | + | chr5.1:14658078-14658097 | MS.gene86563:intron | 25.0% |
| ! | AATATAAAAATGTGGTGAGT+TGG | - | chr5.1:14655306-14655325 | None:intergenic | 25.0% |
| ! | AATGGTAAAATTTACCCTAA+GGG | - | chr5.1:14658156-14658175 | None:intergenic | 25.0% |
| ! | ATTTACCATTCACTTTGATT+GGG | + | chr5.1:14656976-14656995 | MS.gene86563:CDS | 25.0% |
| ! | CTAATGAATATTTACACAAG+TGG | + | chr5.1:14656113-14656132 | MS.gene86563:intron | 25.0% |
| ! | GTCAATATTATTAGTTGAGT+TGG | - | chr5.1:14655904-14655923 | None:intergenic | 25.0% |
| ! | TAATGGTAAAATTTACCCTA+AGG | - | chr5.1:14658157-14658176 | None:intergenic | 25.0% |
| ! | TACTATATATTGTAGCATCA+TGG | - | chr5.1:14655591-14655610 | None:intergenic | 25.0% |
| ! | TATACTAAAAAAAGAACAGC+TGG | + | chr5.1:14658649-14658668 | MS.gene86563:CDS | 25.0% |
| ! | TATCATATCTATATCCATGA+GGG | + | chr5.1:14658451-14658470 | MS.gene86563:intron | 25.0% |
| ! | TATGAATGACCGTTTAAAAA+AGG | - | chr5.1:14656161-14656180 | None:intergenic | 25.0% |
| ! | TGAAATTATACTTATGGAAC+AGG | + | chr5.1:14658791-14658810 | MS.gene86563:intron | 25.0% |
| ! | TGAATTGCAAACAAATTCAA+CGG | - | chr5.1:14657107-14657126 | None:intergenic | 25.0% |
| ! | TGACTCTTTCTTAATGATTA+TGG | + | chr5.1:14656255-14656274 | MS.gene86563:intron | 25.0% |
| ! | TTGTTTATCTTCTCCAAAAA+TGG | - | chr5.1:14658867-14658886 | None:intergenic | 25.0% |
| !! | ATCCTTTTCTTAAAAGATGA+TGG | + | chr5.1:14658915-14658934 | MS.gene86563:CDS | 25.0% |
| !! | ATTTGAAACTTACTTGTAGA+AGG | - | chr5.1:14658333-14658352 | None:intergenic | 25.0% |
| !! | GTTTTTAACATGTGCTTTTA+GGG | - | chr5.1:14658075-14658094 | None:intergenic | 25.0% |
| !! | TGGAGCATTATTCATTAAAT+TGG | - | chr5.1:14658519-14658538 | None:intergenic | 25.0% |
| !! | TTGAAGTCCAAAACATTTTT+GGG | - | chr5.1:14655012-14655031 | None:intergenic | 25.0% |
| !! | TTGAATTTGTTTGCAATTCA+TGG | + | chr5.1:14657107-14657126 | MS.gene86563:CDS | 25.0% |
| !! | TTTTATCGCTACTAGTATAA+TGG | - | chr5.1:14658174-14658193 | None:intergenic | 25.0% |
| !!! | AACCCCTTTTTTAATGTTTA+GGG | + | chr5.1:14656210-14656229 | MS.gene86563:intron | 25.0% |
| !!! | AGTTGGAAAAGAAGTATTTT+TGG | + | chr5.1:14656907-14656926 | MS.gene86563:CDS | 25.0% |
| !!! | ATTTGGAACTTTTAAGTAAG+TGG | + | chr5.1:14655371-14655390 | MS.gene86563:intron | 25.0% |
| !!! | GGATTACTTTAGAATAAACA+AGG | - | chr5.1:14656140-14656159 | None:intergenic | 25.0% |
| !!! | TAGCATTTTCCTTTATTTGT+TGG | + | chr5.1:14656850-14656869 | MS.gene86563:intron | 25.0% |
| !!! | TGTTTTTAACATGTGCTTTT+AGG | - | chr5.1:14658076-14658095 | None:intergenic | 25.0% |
| !!! | TTCCATCATCTTTTAAGAAA+AGG | - | chr5.1:14658920-14658939 | None:intergenic | 25.0% |
| AAAATTTACCCTAAGGGTTA+GGG | - | chr5.1:14658150-14658169 | None:intergenic | 30.0% | |
| AAATTGTACTATCAACACCT+TGG | - | chr5.1:14659031-14659050 | None:intergenic | 30.0% | |
| AATGATTATGGAGGATGAAT+TGG | + | chr5.1:14656267-14656286 | MS.gene86563:intron | 30.0% | |
| AGAACTTCAATTAATGAGGT+CGG | + | chr5.1:14655630-14655649 | MS.gene86563:intron | 30.0% | |
| ATGATTATGGAGGATGAATT+GGG | + | chr5.1:14656268-14656287 | MS.gene86563:intron | 30.0% | |
| ATTCATTAAATTGGCAGCAT+TGG | - | chr5.1:14658510-14658529 | None:intergenic | 30.0% | |
| ATTTACAATTACATGAGCCT+TGG | - | chr5.1:14659063-14659082 | None:intergenic | 30.0% | |
| CATACGCCTCTATAAATATA+GGG | + | chr5.1:14658034-14658053 | MS.gene86563:intron | 30.0% | |
| CATTTACCATTCACTTTGAT+TGG | + | chr5.1:14656975-14656994 | MS.gene86563:CDS | 30.0% | |
| CTATCATATCTATATCCATG+AGG | + | chr5.1:14658450-14658469 | MS.gene86563:intron | 30.0% | |
| CTCTTTCTTAATGATTATGG+AGG | + | chr5.1:14656258-14656277 | MS.gene86563:intron | 30.0% | |
| CTGCGATATGTATTTAGAAA+CGG | + | chr5.1:14656656-14656675 | MS.gene86563:intron | 30.0% | |
| GAAGAATTGCAAAATCTAAG+AGG | + | chr5.1:14657378-14657397 | MS.gene86563:CDS | 30.0% | |
| GATATGTATTTAGAAACGGA+CGG | + | chr5.1:14656660-14656679 | MS.gene86563:intron | 30.0% | |
| GATCCAAGTAGTAAGAAATT+TGG | + | chr5.1:14655354-14655373 | MS.gene86563:intron | 30.0% | |
| GTTCCAAATTTCTTACTACT+TGG | - | chr5.1:14655360-14655379 | None:intergenic | 30.0% | |
| TAAAATTTACCCTAAGGGTT+AGG | - | chr5.1:14658151-14658170 | None:intergenic | 30.0% | |
| TATGATGTCTACAATGATCT+TGG | + | chr5.1:14657444-14657463 | MS.gene86563:CDS | 30.0% | |
| TCATACGCCTCTATAAATAT+AGG | + | chr5.1:14658033-14658052 | MS.gene86563:intron | 30.0% | |
| TGATAGTACAATTTGGCTAT+TGG | + | chr5.1:14659037-14659056 | MS.gene86563:CDS | 30.0% | |
| TTATAGTTAGCAAATCTGCA+TGG | + | chr5.1:14658248-14658267 | MS.gene86563:intron | 30.0% | |
| ! | ATTTTGCTCAATATGTGTGT+AGG | - | chr5.1:14657904-14657923 | None:intergenic | 30.0% |
| ! | ATTTTTGTAGCAAATGGCAA+GGG | + | chr5.1:14656881-14656900 | MS.gene86563:intron | 30.0% |
| ! | GTTGAAGTCCAAAACATTTT+TGG | - | chr5.1:14655013-14655032 | None:intergenic | 30.0% |
| ! | TCTCTTTCTTTAGAAACTAG+AGG | + | chr5.1:14655745-14655764 | MS.gene86563:intron | 30.0% |
| !! | AACTTTTAAGTAAGTGGTTG+GGG | + | chr5.1:14655377-14655396 | MS.gene86563:intron | 30.0% |
| !! | AAGGTGTTGATAGTACAATT+TGG | + | chr5.1:14659030-14659049 | MS.gene86563:CDS | 30.0% |
| !! | AATTTTGTGTTGTTCCCTAT+TGG | + | chr5.1:14655847-14655866 | MS.gene86563:intron | 30.0% |
| !! | CGATCTCTAACTTTTAAGTA+TGG | + | chr5.1:14655403-14655422 | MS.gene86563:intron | 30.0% |
| !! | GAACTTTTAAGTAAGTGGTT+GGG | + | chr5.1:14655376-14655395 | MS.gene86563:intron | 30.0% |
| !! | TATTTTTGTAGCAAATGGCA+AGG | + | chr5.1:14656880-14656899 | MS.gene86563:intron | 30.0% |
| !!! | AGAGTTTGATCTTTTGGAAT+TGG | + | chr5.1:14658476-14658495 | MS.gene86563:intron | 30.0% |
| !!! | GAACCCCTTTTTTAATGTTT+AGG | + | chr5.1:14656209-14656228 | MS.gene86563:intron | 30.0% |
| !!! | GTGCTCAACAAATTTTTTCA+CGG | + | chr5.1:14655461-14655480 | MS.gene86563:intron | 30.0% |
| AATGTACCTCTGATTACATG+TGG | - | chr5.1:14657994-14658013 | None:intergenic | 35.0% | |
| ACGTTAGATATTGCTGTCTA+TGG | + | chr5.1:14658614-14658633 | MS.gene86563:CDS | 35.0% | |
| ATGTGGTAAACTCAACTCTA+TGG | - | chr5.1:14658958-14658977 | None:intergenic | 35.0% | |
| GATCATAGCCAAAAGATCAA+GGG | + | chr5.1:14654970-14654989 | MS.gene86563:CDS | 35.0% | |
| GCATGACCCTATATTTATAG+AGG | - | chr5.1:14658043-14658062 | None:intergenic | 35.0% | |
| GGTCGAAAACCAACTAAAAA+GGG | + | chr5.1:14657549-14657568 | MS.gene86563:CDS | 35.0% | |
| GTTCAATACCACCTTCAAAT+AGG | - | chr5.1:14657879-14657898 | None:intergenic | 35.0% | |
| GTTCCAAGAGATGAAAACTT+TGG | + | chr5.1:14657718-14657737 | MS.gene86563:CDS | 35.0% | |
| TACTGGACAACGAAAAGAAT+GGG | + | chr5.1:14657407-14657426 | MS.gene86563:CDS | 35.0% | |
| TACTTAACACCATTTGGATG+TGG | - | chr5.1:14658975-14658994 | None:intergenic | 35.0% | |
| TCATCTGACTTCCTTACATA+TGG | + | chr5.1:14657751-14657770 | MS.gene86563:CDS | 35.0% | |
| TCGAAGCTATCAAACTCATT+TGG | - | chr5.1:14657844-14657863 | None:intergenic | 35.0% | |
| TCTTGTCTGTAGAAGACTAA+TGG | - | chr5.1:14657360-14657379 | None:intergenic | 35.0% | |
| TGGTCGAAAACCAACTAAAA+AGG | + | chr5.1:14657548-14657567 | MS.gene86563:CDS | 35.0% | |
| TTCCTTATGTAAAATGCTCC+TGG | - | chr5.1:14657019-14657038 | None:intergenic | 35.0% | |
| TTGAGTTTACCACATCCAAA+TGG | + | chr5.1:14658963-14658982 | MS.gene86563:CDS | 35.0% | |
| TTGCAAAATCTAAGAGGAGA+TGG | + | chr5.1:14657384-14657403 | MS.gene86563:CDS | 35.0% | |
| ! | AAATTAATGGTGACGCACAA+TGG | + | chr5.1:14655802-14655821 | MS.gene86563:intron | 35.0% |
| ! | AAATTCAACGGATTCACGAT+TGG | - | chr5.1:14657095-14657114 | None:intergenic | 35.0% |
| ! | AATTCAACGGATTCACGATT+GGG | - | chr5.1:14657094-14657113 | None:intergenic | 35.0% |
| ! | AATTTCCTTAAGGACTGGTA+AGG | - | chr5.1:14657932-14657951 | None:intergenic | 35.0% |
| ! | AGGGTAAGAGTTTGATCTTT+TGG | + | chr5.1:14658470-14658489 | MS.gene86563:intron | 35.0% |
| ! | ATTTCCTTAAGGACTGGTAA+GGG | - | chr5.1:14657931-14657950 | None:intergenic | 35.0% |
| ! | CATCCAAATGGTGTTAAGTA+TGG | + | chr5.1:14658975-14658994 | MS.gene86563:CDS | 35.0% |
| ! | GCAATATCTAACGTGCTTTT+CGG | - | chr5.1:14658608-14658627 | None:intergenic | 35.0% |
| ! | GTTGATGCCCAAAAATGTTT+TGG | + | chr5.1:14655002-14655021 | MS.gene86563:CDS | 35.0% |
| ! | TAGAGGCGTATGATTGAATA+AGG | - | chr5.1:14658026-14658045 | None:intergenic | 35.0% |
| ! | TGTCCAAAGTTTTCATCTCT+TGG | - | chr5.1:14657724-14657743 | None:intergenic | 35.0% |
| !! | GGAACTTTTAAGTAAGTGGT+TGG | + | chr5.1:14655375-14655394 | MS.gene86563:intron | 35.0% |
| !!! | TGATGCATTCATGCCATTTT+TGG | + | chr5.1:14658851-14658870 | MS.gene86563:CDS | 35.0% |
| !!! | TTCCAGGAGCATTTTACATA+AGG | + | chr5.1:14657014-14657033 | MS.gene86563:CDS | 35.0% |
| !!! | TTTGATTGGGATGCTGATTT+TGG | + | chr5.1:14656989-14657008 | MS.gene86563:CDS | 35.0% |
| AATCTAAGAGGAGATGGTAC+TGG | + | chr5.1:14657390-14657409 | MS.gene86563:CDS | 40.0% | |
| AGATCAAACTCTTACCCTCA+TGG | - | chr5.1:14658468-14658487 | None:intergenic | 40.0% | |
| AGATGACAAACCATCTGTCT+TGG | - | chr5.1:14655178-14655197 | None:intergenic | 40.0% | |
| AGCATCCCAATCAAAGTGAA+TGG | - | chr5.1:14656984-14657003 | None:intergenic | 40.0% | |
| AGCTGGAGATTAATCTAGGT+GGG | + | chr5.1:14658666-14658685 | MS.gene86563:CDS | 40.0% | |
| ATGCCAAAGCTTATGCAACT+AGG | + | chr5.1:14658889-14658908 | MS.gene86563:CDS | 40.0% | |
| CAAGTAGGTCACACATGTAT+CGG | - | chr5.1:14656078-14656097 | None:intergenic | 40.0% | |
| CAGTGCGGAAAATTTCCTTA+AGG | - | chr5.1:14657942-14657961 | None:intergenic | 40.0% | |
| CGAAGAATTTGGAAGAGAGA+TGG | + | chr5.1:14658279-14658298 | MS.gene86563:CDS | 40.0% | |
| CGGAAAATTTCCTTAAGGAC+TGG | - | chr5.1:14657937-14657956 | None:intergenic | 40.0% | |
| CTTATGGAACAGGCACTTAA+TGG | + | chr5.1:14658801-14658820 | MS.gene86563:intron | 40.0% | |
| GAACAGCTGGAGATTAATCT+AGG | + | chr5.1:14658662-14658681 | MS.gene86563:CDS | 40.0% | |
| GCACCATACTTAACACCATT+TGG | - | chr5.1:14658981-14659000 | None:intergenic | 40.0% | |
| GGATCATAGCCAAAAGATCA+AGG | + | chr5.1:14654969-14654988 | MS.gene86563:CDS | 40.0% | |
| GTACTGGACAACGAAAAGAA+TGG | + | chr5.1:14657406-14657425 | MS.gene86563:CDS | 40.0% | |
| TACAATTTGGCTATTGGCCA+AGG | + | chr5.1:14659043-14659062 | MS.gene86563:CDS | 40.0% | |
| TGGATGACTGACGAAGAATT+TGG | + | chr5.1:14658268-14658287 | MS.gene86563:CDS | 40.0% | |
| TGTCCTAGTTGCATAAGCTT+TGG | - | chr5.1:14658895-14658914 | None:intergenic | 40.0% | |
| ! | AAGAAGACCACCTTGTTTGA+CGG | - | chr5.1:14655046-14655065 | None:intergenic | 40.0% |
| ! | AAGGAAATTTTCCGCACTGA+TGG | + | chr5.1:14657943-14657962 | MS.gene86563:CDS | 40.0% |
| ! | ATATCTAACGTGCTTTTCGG+TGG | - | chr5.1:14658605-14658624 | None:intergenic | 40.0% |
| ! | ATTTGTTGAGCACACAAGAG+TGG | - | chr5.1:14655454-14655473 | None:intergenic | 40.0% |
| ! | GGATTTGGAGCTTACATCAT+TGG | - | chr5.1:14657176-14657195 | None:intergenic | 40.0% |
| ! | TATCTAACGTGCTTTTCGGT+GGG | - | chr5.1:14658604-14658623 | None:intergenic | 40.0% |
| !!! | GATGCTGATTTTGGAATTCC+AGG | + | chr5.1:14656998-14657017 | MS.gene86563:CDS | 40.0% |
| AACATGTGCCCTAACCCTTA+GGG | + | chr5.1:14658139-14658158 | MS.gene86563:intron | 45.0% | |
| AATGGAGCTGGTGTTTGACT+TGG | - | chr5.1:14657342-14657361 | None:intergenic | 45.0% | |
| ACCATCAACTCATGAGCCAT+TGG | + | chr5.1:14659093-14659112 | MS.gene86563:CDS | 45.0% | |
| AGATACGTTCCGACCTAAGA+AGG | - | chr5.1:14655136-14655155 | None:intergenic | 45.0% | |
| ATCAGTGCTACCAAGACAGA+TGG | + | chr5.1:14655165-14655184 | MS.gene86563:CDS | 45.0% | |
| CAACTCATGAGCCATTGGTA+TGG | + | chr5.1:14659098-14659117 | MS.gene86563:CDS | 45.0% | |
| CAGCTGGAGATTAATCTAGG+TGG | + | chr5.1:14658665-14658684 | MS.gene86563:CDS | 45.0% | |
| CTGTAGAAGACTAATGGAGC+TGG | - | chr5.1:14657354-14657373 | None:intergenic | 45.0% | |
| CTTGGAACATACATCACACC+TGG | - | chr5.1:14657706-14657725 | None:intergenic | 45.0% | |
| GAAGTGCGTGACCTATTTGA+AGG | + | chr5.1:14657865-14657884 | MS.gene86563:CDS | 45.0% | |
| GATCCTAAAAGTGAGAGACC+AGG | + | chr5.1:14657685-14657704 | MS.gene86563:intron | 45.0% | |
| GCAAGCTTGACATCTTCATC+TGG | - | chr5.1:14657474-14657493 | None:intergenic | 45.0% | |
| GTACCTCTGATTACATGTGG+TGG | - | chr5.1:14657991-14658010 | None:intergenic | 45.0% | |
| GTAGAAGGCGAATCACACAA+GGG | - | chr5.1:14658318-14658337 | None:intergenic | 45.0% | |
| TAACATGTGCCCTAACCCTT+AGG | + | chr5.1:14658138-14658157 | MS.gene86563:intron | 45.0% | |
| TAGGTCGGAACGTATCTATG+CGG | + | chr5.1:14655139-14655158 | MS.gene86563:CDS | 45.0% | |
| TGTAGAAGGCGAATCACACA+AGG | - | chr5.1:14658319-14658338 | None:intergenic | 45.0% | |
| TTTGGAAGAGAGATGGTTGC+TGG | + | chr5.1:14658286-14658305 | MS.gene86563:CDS | 45.0% | |
| ! | ACCAATGGCTCATGAGTTGA+TGG | - | chr5.1:14659097-14659116 | None:intergenic | 45.0% |
| ! | GCAAATGGCAAGGGATTAGT+TGG | + | chr5.1:14656890-14656909 | MS.gene86563:intron | 45.0% |
| !! | ACACCTGGTCTCTCACTTTT+AGG | - | chr5.1:14657691-14657710 | None:intergenic | 45.0% |
| !! | ATAAGAAATATATATTAAAT+TGG | - | chr5.1:14658223-14658242 | None:intergenic | 5.0% |
| !! | TAATATTTAATATAAAAATG+TGG | - | chr5.1:14655314-14655333 | None:intergenic | 5.0% |
| !!! | ATAATTTTTTAGTAAATTAA+TGG | + | chr5.1:14655789-14655808 | MS.gene86563:intron | 5.0% |
| !!! | CAATTAATATTTAATATTTT+AGG | - | chr5.1:14657298-14657317 | None:intergenic | 5.0% |
| !!! | TTATTTACAATTTTTTTTTT+TGG | + | chr5.1:14658382-14658401 | MS.gene86563:intron | 5.0% |
| ATCATCTTGCCTGCAGACCA+AGG | + | chr5.1:14659011-14659030 | MS.gene86563:CDS | 50.0% | |
| CACTCATCCTTACCCTCGAA+GGG | + | chr5.1:14657518-14657537 | MS.gene86563:CDS | 50.0% | |
| CAGTCCCTTACCAGTCCTTA+AGG | + | chr5.1:14657924-14657943 | MS.gene86563:CDS | 50.0% | |
| CCACCACCACATGTAATCAG+AGG | + | chr5.1:14657985-14658004 | MS.gene86563:CDS | 50.0% | |
| CCTCTGATTACATGTGGTGG+TGG | - | chr5.1:14657988-14658007 | None:intergenic | 50.0% | |
| CTATCAACACCTTGGTCTGC+AGG | - | chr5.1:14659023-14659042 | None:intergenic | 50.0% | |
| CTTCTAACCCTTCGAGGGTA+AGG | - | chr5.1:14657528-14657547 | None:intergenic | 50.0% | |
| GACCACTTCTAACCCTTCGA+GGG | - | chr5.1:14657533-14657552 | None:intergenic | 50.0% | |
| GCTGTAACGTCCGTCAAACA+AGG | + | chr5.1:14655033-14655052 | MS.gene86563:CDS | 50.0% | |
| GGCAGCATCAAGAATGTTCC+CGG | - | chr5.1:14655076-14655095 | None:intergenic | 50.0% | |
| GGGAACATTCTTGATGCTGC+CGG | + | chr5.1:14655075-14655094 | MS.gene86563:CDS | 50.0% | |
| GTAACGTCCGTCAAACAAGG+TGG | + | chr5.1:14655036-14655055 | MS.gene86563:CDS | 50.0% | |
| GTGCGTGACCTATTTGAAGG+TGG | + | chr5.1:14657868-14657887 | MS.gene86563:CDS | 50.0% | |
| TACCCTCGAAGGGTTAGAAG+TGG | + | chr5.1:14657528-14657547 | MS.gene86563:CDS | 50.0% | |
| TCTTGTCTTGCTCCCAAGGT+TGG | - | chr5.1:14656953-14656972 | None:intergenic | 50.0% | |
| TGCATCTTGTCTTGCTCCCA+AGG | - | chr5.1:14656957-14656976 | None:intergenic | 50.0% | |
| TTGGTCGGCGGGATAATTGA+CGG | + | chr5.1:14655102-14655121 | MS.gene86563:CDS | 50.0% | |
| ! | AGGTGGGCTCACAGTAGAAA+AGG | + | chr5.1:14658682-14658701 | MS.gene86563:CDS | 50.0% |
| ! | CCACAGTGCCCTTGATCTTT+TGG | - | chr5.1:14654981-14655000 | None:intergenic | 50.0% |
| ! | GGACTTGTTCACCATCAGTG+CGG | - | chr5.1:14657957-14657976 | None:intergenic | 50.0% |
| ! | GTGCTACTGCCTTCTTAGGT+CGG | + | chr5.1:14655124-14655143 | MS.gene86563:CDS | 50.0% |
| !! | CATGTGGTGGTGGAAACTTG+AGG | - | chr5.1:14657978-14657997 | None:intergenic | 50.0% |
| !! | CCAAAAGATCAAGGGCACTG+TGG | + | chr5.1:14654978-14654997 | MS.gene86563:CDS | 50.0% |
| CGACCACTTCTAACCCTTCG+AGG | - | chr5.1:14657534-14657553 | None:intergenic | 55.0% | |
| GATGAGTGCTAGACCCTCCA+AGG | - | chr5.1:14657506-14657525 | None:intergenic | 55.0% | |
| GCACTCATCCTTACCCTCGA+AGG | + | chr5.1:14657517-14657536 | MS.gene86563:CDS | 55.0% | |
| GGTGGTCTTCTTGATGCTGC+CGG | + | chr5.1:14655054-14655073 | MS.gene86563:CDS | 55.0% | |
| GTCCCCACTCTACCAACCTT+GGG | + | chr5.1:14656938-14656957 | MS.gene86563:CDS | 55.0% | |
| GTGGTCTTCTTGATGCTGCC+GGG | + | chr5.1:14655055-14655074 | MS.gene86563:CDS | 55.0% | |
| TGTCCCCACTCTACCAACCT+TGG | + | chr5.1:14656937-14656956 | MS.gene86563:CDS | 55.0% | |
| TTGCTCGTCCAGTCCTTGGA+GGG | + | chr5.1:14657490-14657509 | MS.gene86563:CDS | 55.0% | |
| ! | AAGCTTGCTCGTCCAGTCCT+TGG | + | chr5.1:14657486-14657505 | MS.gene86563:CDS | 55.0% |
| !! | CTCCCAAGGTTGGTAGAGTG+GGG | - | chr5.1:14656943-14656962 | None:intergenic | 55.0% |
| !! | GACGGTGCTACTGCCTTCTT+AGG | + | chr5.1:14655120-14655139 | MS.gene86563:CDS | 55.0% |
| !! | GCTCCCAAGGTTGGTAGAGT+GGG | - | chr5.1:14656944-14656963 | None:intergenic | 55.0% |
| !! | TGCTCCCAAGGTTGGTAGAG+TGG | - | chr5.1:14656945-14656964 | None:intergenic | 55.0% |
| CTTGCTCGTCCAGTCCTTGG+AGG | + | chr5.1:14657489-14657508 | MS.gene86563:CDS | 60.0% | |
| GTGCTAGACCCTCCAAGGAC+TGG | - | chr5.1:14657501-14657520 | None:intergenic | 60.0% | |
| TCTTGATGCTGCCGGCAGCT+TGG | + | chr5.1:14655083-14655102 | MS.gene86563:CDS | 60.0% | |
| GATGCTGCCGGCAGCTTGGT+CGG | + | chr5.1:14655087-14655106 | MS.gene86563:CDS | 65.0% | |
| TATCCCGCCGACCAAGCTGC+CGG | - | chr5.1:14655097-14655116 | None:intergenic | 65.0% | |
| CTGCCGGCAGCTTGGTCGGC+GGG | + | chr5.1:14655091-14655110 | MS.gene86563:CDS | 75.0% | |
| GCTGCCGGCAGCTTGGTCGG+CGG | + | chr5.1:14655090-14655109 | MS.gene86563:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 14654949 | 14659130 | 14654949 | ID=MS.gene86563 |
| chr5.1 | mRNA | 14654949 | 14659130 | 14654949 | ID=MS.gene86563.t1;Parent=MS.gene86563 |
| chr5.1 | exon | 14654949 | 14655186 | 14654949 | ID=MS.gene86563.t1.exon1;Parent=MS.gene86563.t1 |
| chr5.1 | CDS | 14654949 | 14655186 | 14654949 | ID=cds.MS.gene86563.t1;Parent=MS.gene86563.t1 |
| chr5.1 | exon | 14656891 | 14657180 | 14656891 | ID=MS.gene86563.t1.exon2;Parent=MS.gene86563.t1 |
| chr5.1 | CDS | 14656891 | 14657180 | 14656891 | ID=cds.MS.gene86563.t1;Parent=MS.gene86563.t1 |
| chr5.1 | exon | 14657330 | 14657570 | 14657330 | ID=MS.gene86563.t1.exon3;Parent=MS.gene86563.t1 |
| chr5.1 | CDS | 14657330 | 14657570 | 14657330 | ID=cds.MS.gene86563.t1;Parent=MS.gene86563.t1 |
| chr5.1 | exon | 14657686 | 14658006 | 14657686 | ID=MS.gene86563.t1.exon4;Parent=MS.gene86563.t1 |
| chr5.1 | CDS | 14657686 | 14658006 | 14657686 | ID=cds.MS.gene86563.t1;Parent=MS.gene86563.t1 |
| chr5.1 | exon | 14658254 | 14658339 | 14658254 | ID=MS.gene86563.t1.exon5;Parent=MS.gene86563.t1 |
| chr5.1 | CDS | 14658254 | 14658339 | 14658254 | ID=cds.MS.gene86563.t1;Parent=MS.gene86563.t1 |
| chr5.1 | exon | 14658596 | 14658703 | 14658596 | ID=MS.gene86563.t1.exon6;Parent=MS.gene86563.t1 |
| chr5.1 | CDS | 14658596 | 14658703 | 14658596 | ID=cds.MS.gene86563.t1;Parent=MS.gene86563.t1 |
| chr5.1 | exon | 14658813 | 14659130 | 14658813 | ID=MS.gene86563.t1.exon7;Parent=MS.gene86563.t1 |
| chr5.1 | CDS | 14658813 | 14659130 | 14658813 | ID=cds.MS.gene86563.t1;Parent=MS.gene86563.t1 |
| Gene Sequence |
| Protein sequence |
