Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88193.t1 | XP_013455791.1 | 92 | 640 | 50 | 1 | 1 | 640 | 1 | 639 | 0.00E+00 | 1080.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88193.t1 | Q66GQ2 | 28.6 | 391 | 244 | 10 | 140 | 511 | 105 | 479 | 4.0e-15 | 84.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88193.t1 | A0A072UJH3 | 92.0 | 640 | 50 | 1 | 1 | 640 | 1 | 639 | 0.0e+00 | 1080.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene88193 | 0.824648 | 7.20E-54 | -1.69E-46 |
| MS.gene049190 | MS.gene88193 | 0.808761 | 2.64E-50 | -1.69E-46 |
| MS.gene049341 | MS.gene88193 | 0.800213 | 1.60E-48 | -1.69E-46 |
| MS.gene049807 | MS.gene88193 | 0.804075 | 2.57E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene88193 | 0.80427 | 2.34E-49 | -1.69E-46 |
| MS.gene050585 | MS.gene88193 | 0.805112 | 1.56E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene88193 | 0.811335 | 7.37E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene88193 | 0.809762 | 1.61E-50 | -1.69E-46 |
| MS.gene050901 | MS.gene88193 | 0.833239 | 5.98E-56 | -1.69E-46 |
| MS.gene051102 | MS.gene88193 | 0.829397 | 5.27E-55 | -1.69E-46 |
| MS.gene05157 | MS.gene88193 | 0.865486 | 5.70E-65 | -1.69E-46 |
| MS.gene051719 | MS.gene88193 | 0.826952 | 2.04E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene88193 | 0.845826 | 3.19E-59 | -1.69E-46 |
| MS.gene051744 | MS.gene88193 | 0.817922 | 2.57E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene88193 | 0.804573 | 2.02E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene88193 | 0.806566 | 7.73E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene88193 | 0.801615 | 8.28E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene88193 | 0.817993 | 2.47E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene88193 | 0.822557 | 2.22E-53 | -1.69E-46 |
| MS.gene052732 | MS.gene88193 | 0.830561 | 2.74E-55 | -1.69E-46 |
| MS.gene053144 | MS.gene88193 | 0.856088 | 4.07E-62 | -1.69E-46 |
| MS.gene053174 | MS.gene88193 | 0.853542 | 2.23E-61 | -1.69E-46 |
| MS.gene053581 | MS.gene88193 | 0.845048 | 5.18E-59 | -1.69E-46 |
| MS.gene054550 | MS.gene88193 | 0.84404 | 9.67E-59 | -1.69E-46 |
| MS.gene054584 | MS.gene88193 | 0.857811 | 1.27E-62 | -1.69E-46 |
| MS.gene05462 | MS.gene88193 | 0.803473 | 3.43E-49 | -1.69E-46 |
| MS.gene054824 | MS.gene88193 | 0.803007 | 4.28E-49 | -1.69E-46 |
| MS.gene055144 | MS.gene88193 | 0.825983 | 3.48E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene88193 | 0.841125 | 5.74E-58 | -1.69E-46 |
| MS.gene055466 | MS.gene88193 | 0.824527 | 7.69E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene88193 | 0.813764 | 2.17E-51 | -1.69E-46 |
| MS.gene055469 | MS.gene88193 | 0.809555 | 1.79E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene88193 | 0.800229 | 1.59E-48 | -1.69E-46 |
| MS.gene055537 | MS.gene88193 | 0.833632 | 4.77E-56 | -1.69E-46 |
| MS.gene055580 | MS.gene88193 | -0.8101 | 1.36E-50 | -1.69E-46 |
| MS.gene055890 | MS.gene88193 | 0.837753 | 4.31E-57 | -1.69E-46 |
| MS.gene055891 | MS.gene88193 | 0.830533 | 2.78E-55 | -1.69E-46 |
| MS.gene056005 | MS.gene88193 | 0.807505 | 4.89E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene88193 | 0.840344 | 9.20E-58 | -1.69E-46 |
| MS.gene056507 | MS.gene88193 | 0.835788 | 1.37E-56 | -1.69E-46 |
| MS.gene056553 | MS.gene88193 | 0.810845 | 9.41E-51 | -1.69E-46 |
| MS.gene057446 | MS.gene88193 | 0.811136 | 8.14E-51 | -1.69E-46 |
| MS.gene058087 | MS.gene88193 | 0.800333 | 1.51E-48 | -1.69E-46 |
| MS.gene05894 | MS.gene88193 | 0.818522 | 1.88E-52 | -1.69E-46 |
| MS.gene05978 | MS.gene88193 | 0.805992 | 1.02E-49 | -1.69E-46 |
| MS.gene060519 | MS.gene88193 | 0.833729 | 4.51E-56 | -1.69E-46 |
| MS.gene060587 | MS.gene88193 | 0.815206 | 1.04E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88193.t1 | MTR_4g052400 | 95.312 | 640 | 29 | 1 | 1 | 640 | 1 | 639 | 0.0 | 1198 |
| MS.gene88193.t1 | MTR_4g052400 | 94.969 | 477 | 23 | 1 | 164 | 640 | 2 | 477 | 0.0 | 887 |
| MS.gene88193.t1 | MTR_2g086890 | 51.274 | 667 | 260 | 21 | 1 | 628 | 1 | 641 | 5.55e-175 | 512 |
| MS.gene88193.t1 | MTR_7g105430 | 43.358 | 542 | 258 | 17 | 19 | 524 | 4 | 532 | 1.40e-110 | 347 |
| MS.gene88193.t1 | MTR_5g009750 | 31.111 | 405 | 254 | 8 | 45 | 436 | 20 | 412 | 2.20e-42 | 163 |
| MS.gene88193.t1 | MTR_3g051430 | 38.249 | 217 | 129 | 3 | 219 | 435 | 199 | 410 | 2.59e-35 | 142 |
| MS.gene88193.t1 | MTR_5g092610 | 39.524 | 210 | 119 | 2 | 228 | 437 | 201 | 402 | 6.62e-31 | 129 |
| MS.gene88193.t1 | MTR_8g028230 | 27.163 | 416 | 259 | 11 | 42 | 449 | 18 | 397 | 5.51e-28 | 119 |
| MS.gene88193.t1 | MTR_2g023020 | 34.896 | 192 | 117 | 1 | 256 | 439 | 176 | 367 | 7.72e-24 | 106 |
| MS.gene88193.t1 | MTR_8g028230 | 30.400 | 250 | 166 | 4 | 206 | 449 | 109 | 356 | 7.89e-23 | 102 |
| MS.gene88193.t1 | MTR_8g028230 | 30.400 | 250 | 166 | 4 | 206 | 449 | 63 | 310 | 8.89e-23 | 102 |
| MS.gene88193.t1 | MTR_8g028230 | 30.400 | 250 | 166 | 4 | 206 | 449 | 36 | 283 | 1.52e-22 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88193.t1 | AT3G11590 | 43.487 | 522 | 257 | 12 | 22 | 514 | 15 | 527 | 9.29e-106 | 333 |
| MS.gene88193.t1 | AT3G11590 | 45.322 | 342 | 176 | 5 | 180 | 514 | 28 | 365 | 2.77e-73 | 243 |
| MS.gene88193.t1 | AT5G22310 | 35.800 | 500 | 221 | 16 | 23 | 512 | 9 | 418 | 2.99e-57 | 201 |
| MS.gene88193.t1 | AT1G50660 | 38.073 | 218 | 133 | 1 | 220 | 437 | 213 | 428 | 1.31e-40 | 158 |
| MS.gene88193.t1 | AT3G20350 | 35.321 | 218 | 139 | 1 | 220 | 437 | 190 | 405 | 1.77e-33 | 136 |
| MS.gene88193.t1 | AT5G41620 | 27.974 | 454 | 271 | 14 | 96 | 511 | 44 | 479 | 4.94e-23 | 104 |
| MS.gene88193.t1 | AT5G41620 | 29.642 | 307 | 193 | 7 | 214 | 511 | 70 | 362 | 3.01e-21 | 98.2 |
| MS.gene88193.t1 | AT5G41620 | 29.642 | 307 | 193 | 7 | 214 | 511 | 70 | 362 | 3.01e-21 | 98.2 |
| MS.gene88193.t1 | AT5G41620 | 29.642 | 307 | 193 | 7 | 214 | 511 | 28 | 320 | 3.87e-21 | 97.4 |
| MS.gene88193.t1 | AT1G64180 | 27.720 | 386 | 229 | 13 | 97 | 460 | 61 | 418 | 1.03e-17 | 87.4 |
| MS.gene88193.t1 | AT2G46250 | 27.321 | 377 | 216 | 12 | 42 | 415 | 13 | 334 | 7.11e-16 | 81.3 |
| MS.gene88193.t1 | AT2G46250 | 30.189 | 212 | 126 | 5 | 205 | 415 | 53 | 243 | 5.39e-12 | 68.6 |
Find 116 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTCTGAGACCTTCTTTA+AGG | 0.128943 | 4.4:-50166002 | None:intergenic |
| CAGATTCAAGAGAGCTATTT+TGG | 0.144203 | 4.4:+50166092 | MS.gene88193:CDS |
| GTCCTTCAAACTCTGCATTT+TGG | 0.173945 | 4.4:-50168366 | None:intergenic |
| AGAACTAGAGATGAAGAAAA+TGG | 0.210580 | 4.4:+50168274 | MS.gene88193:CDS |
| CTCCTTCTCTTTATCTTTGC+AGG | 0.213342 | 4.4:-50166232 | None:intergenic |
| TAGAAATTTACCTCAGAAAT+AGG | 0.224300 | 4.4:-50166450 | None:intergenic |
| TACTAACTCTTCACCTTCTA+TGG | 0.269218 | 4.4:+50166164 | MS.gene88193:CDS |
| CAAATCCCTCTTCTTGAAAC+TGG | 0.309352 | 4.4:-50168593 | None:intergenic |
| CCATATACTCAATGTCGTTC+TGG | 0.316655 | 4.4:-50167790 | None:intergenic |
| CCAGAACGACATTGAGTATA+TGG | 0.324326 | 4.4:+50167790 | MS.gene88193:CDS |
| CAGTTTCAAGAAGAGGGATT+TGG | 0.331048 | 4.4:+50168594 | MS.gene88193:CDS |
| AATTCCTTCTTGACCCTTGA+AGG | 0.331701 | 4.4:-50166312 | None:intergenic |
| GTTATTCATGTTCAATTCAA+TGG | 0.348123 | 4.4:-50168425 | None:intergenic |
| ATGAACTAGCTAGAGGTATT+GGG | 0.350017 | 4.4:+50168050 | MS.gene88193:CDS |
| CTCTCGGAAGTGAGCTTGAT+CGG | 0.359285 | 4.4:+50167717 | MS.gene88193:CDS |
| GAACTAGAGATGAAGAAAAT+GGG | 0.372973 | 4.4:+50168275 | MS.gene88193:CDS |
| TAGCCTCTGAAAGCTTCATT+TGG | 0.383384 | 4.4:-50168186 | None:intergenic |
| GATGAACTAGCTAGAGGTAT+TGG | 0.384127 | 4.4:+50168049 | MS.gene88193:CDS |
| TTATCTCATCCACTTCGTTC+TGG | 0.386985 | 4.4:+50166609 | MS.gene88193:CDS |
| TCATGTTCAATTCAATGGAT+TGG | 0.393833 | 4.4:-50168420 | None:intergenic |
| GCTGGTGGAGGAAATGAAAA+AGG | 0.402845 | 4.4:+50168084 | MS.gene88193:CDS |
| GCTAAGAGTTTGTCAAGATC+AGG | 0.410446 | 4.4:+50166390 | MS.gene88193:CDS |
| AAAACTTGCTGCTTCTTTGT+GGG | 0.417689 | 4.4:+50166272 | MS.gene88193:CDS |
| CTAGTCTTCCACAGTGGAAC+TGG | 0.417773 | 4.4:-50166141 | None:intergenic |
| GACATCGAAGAAGATTCTTA+AGG | 0.419711 | 4.4:+50167637 | MS.gene88193:CDS |
| CTTGTATAAGTTTGTCAAGT+AGG | 0.423672 | 4.4:-50167748 | None:intergenic |
| GAGAAATTCAATTGAACTAT+CGG | 0.431627 | 4.4:-50168653 | None:intergenic |
| GAAAACTTGCTGCTTCTTTG+TGG | 0.434838 | 4.4:+50166271 | MS.gene88193:CDS |
| ATCTTATGAGAGAATTCAAT+GGG | 0.436305 | 4.4:+50168543 | MS.gene88193:CDS |
| AGAAAATGGGGATGCTTCTC+CGG | 0.438097 | 4.4:+50168288 | MS.gene88193:CDS |
| CTTCATCTTCTTTAGCAAGA+AGG | 0.440648 | 4.4:+50166067 | MS.gene88193:CDS |
| TAAGAAGATTGCCCTAGAAA+TGG | 0.445287 | 4.4:+50167943 | MS.gene88193:CDS |
| TTACAGTGGAGAAGAAGTTA+AGG | 0.447721 | 4.4:+50167900 | MS.gene88193:CDS |
| GGTTACAGAAGAACAGTGTC+AGG | 0.450224 | 4.4:+50166585 | MS.gene88193:CDS |
| TCTCGGAAGTGAGCTTGATC+GGG | 0.453424 | 4.4:+50167718 | MS.gene88193:CDS |
| TTTGAAATAGACCTATTGCT+TGG | 0.457001 | 4.4:-50168712 | None:intergenic |
| AGATTTCACACAACAAAATC+AGG | 0.460418 | 4.4:+50166022 | MS.gene88193:CDS |
| AAGGGTCAAGAAGGAATTTG+AGG | 0.460502 | 4.4:+50166317 | MS.gene88193:CDS |
| AGTGAGCTTGATCGGGTTTG+CGG | 0.462949 | 4.4:+50167725 | MS.gene88193:CDS |
| TTCCAAAATGCAGAGTTTGA+AGG | 0.463631 | 4.4:+50168364 | MS.gene88193:CDS |
| TCAATGATTTGCATCCTTCA+AGG | 0.464131 | 4.4:+50166298 | MS.gene88193:CDS |
| AGGACGGCACTCCAAGCAAT+AGG | 0.467947 | 4.4:+50168701 | MS.gene88193:CDS |
| TTTGAAATGCAGAAGAATAG+TGG | 0.468349 | 4.4:+50167560 | MS.gene88193:intron |
| AACATGAATAACGGCAATAG+AGG | 0.473854 | 4.4:+50168436 | MS.gene88193:CDS |
| AGAGGCTAAGTATCAATTTG+AGG | 0.476141 | 4.4:+50168201 | MS.gene88193:CDS |
| AGAAATTCAATTGAACTATC+GGG | 0.482943 | 4.4:-50168652 | None:intergenic |
| GAAATTCCAGTTTCAAGAAG+AGG | 0.486758 | 4.4:+50168587 | MS.gene88193:CDS |
| AAATCCTCTTCTTGTCTTCG+AGG | 0.491087 | 4.4:+50168801 | MS.gene88193:CDS |
| TTGATTATGCAGAGAATGAA+AGG | 0.495962 | 4.4:+50166549 | MS.gene88193:intron |
| TTGAATTTCTCTCTCGAGCT+CGG | 0.496584 | 4.4:+50168665 | MS.gene88193:CDS |
| TCCTTCTCTTTATCTTTGCA+GGG | 0.498201 | 4.4:-50166231 | None:intergenic |
| TACTTCTAGCTTCCTTCAGA+TGG | 0.502252 | 4.4:-50167607 | None:intergenic |
| AAATTCCAGTTTCAAGAAGA+GGG | 0.503620 | 4.4:+50168588 | MS.gene88193:CDS |
| ATGAAAGGATTTGAAAGTGA+TGG | 0.504945 | 4.4:+50166564 | MS.gene88193:CDS |
| AAGTATGTGAAGAGCTTGAA+AGG | 0.517210 | 4.4:+50167990 | MS.gene88193:CDS |
| TATCAGTGTTAGTTTAAATG+AGG | 0.522803 | 4.4:+50166644 | MS.gene88193:CDS |
| AATCTTATGAGAGAATTCAA+TGG | 0.524217 | 4.4:+50168542 | MS.gene88193:CDS |
| GCATCCTTCAAGGGTCAAGA+AGG | 0.524583 | 4.4:+50166308 | MS.gene88193:CDS |
| CAATGATTTGCATCCTTCAA+GGG | 0.529504 | 4.4:+50166299 | MS.gene88193:CDS |
| AGTATGTGAAGAGCTTGAAA+GGG | 0.530337 | 4.4:+50167991 | MS.gene88193:CDS |
| ATGGCCCTCACCTTGGCTCT+CGG | 0.531209 | 4.4:+50167701 | MS.gene88193:CDS |
| AATCCTCTTCTTGTCTTCGA+GGG | 0.535739 | 4.4:+50168802 | MS.gene88193:CDS |
| ATTGAATTGAACATGAATAA+CGG | 0.536556 | 4.4:+50168427 | MS.gene88193:CDS |
| ATCGACAATGGCCCTCACCT+TGG | 0.536907 | 4.4:+50167694 | MS.gene88193:CDS |
| TTGGATACAAATATTCAAGA+AGG | 0.536980 | 4.4:+50168613 | MS.gene88193:CDS |
| ATGGAGTTATCCAAGCGAAA+AGG | 0.537795 | 4.4:+50168465 | MS.gene88193:CDS |
| ACAAACAATAACCTTAAAGA+AGG | 0.541262 | 4.4:+50165991 | MS.gene88193:CDS |
| TCAACTGACAAAGAAAGTAC+AGG | 0.541285 | 4.4:+50168514 | MS.gene88193:CDS |
| TCACCCTCGAAGACAAGAAG+AGG | 0.541783 | 4.4:-50168805 | None:intergenic |
| TGGGGAAGACAGAGCGCTGG+TGG | 0.546628 | 4.4:+50168069 | MS.gene88193:CDS |
| CACTTCCGAGAGCCAAGGTG+AGG | 0.561898 | 4.4:-50167706 | None:intergenic |
| GAAGAATAGTGGCAAATTCG+CGG | 0.565521 | 4.4:+50167571 | MS.gene88193:intron |
| TGCTAAAGAAGATGAAGATG+AGG | 0.568581 | 4.4:-50166061 | None:intergenic |
| GGTTAAAGTTCGTGAAGAAG+TGG | 0.574473 | 4.4:+50168111 | MS.gene88193:CDS |
| GGAAGACAGAGCGCTGGTGG+AGG | 0.574780 | 4.4:+50168072 | MS.gene88193:CDS |
| TGTCAAGATCAGGTTTGTTG+AGG | 0.577058 | 4.4:+50166400 | MS.gene88193:CDS |
| CCACAGTGGAACTGGTGTGG+TGG | 0.578057 | 4.4:-50166133 | None:intergenic |
| TGAACTAGCTAGAGGTATTG+GGG | 0.580383 | 4.4:+50168051 | MS.gene88193:CDS |
| AACTAGAGATGAAGAAAATG+GGG | 0.583537 | 4.4:+50168276 | MS.gene88193:CDS |
| TGTGTAGTGTTCTCCATAGA+AGG | 0.588791 | 4.4:-50166177 | None:intergenic |
| TCATCCACTTCGTTCTGGTG+TGG | 0.594511 | 4.4:+50166614 | MS.gene88193:CDS |
| AATAGTGGCAAATTCGCGGT+TGG | 0.594910 | 4.4:+50167575 | MS.gene88193:CDS |
| CTATTACATGGATCTGACAT+AGG | 0.597551 | 4.4:-50166426 | None:intergenic |
| GTTTGTTTGATTATGACAAG+AGG | 0.599018 | 4.4:-50165974 | None:intergenic |
| CAACTGACAAAGAAAGTACA+GGG | 0.604741 | 4.4:+50168515 | MS.gene88193:CDS |
| AGGACATAATGACTCGGATG+AGG | 0.605873 | 4.4:+50168384 | MS.gene88193:CDS |
| TGGAGTGAAGAGCCATCTGA+AGG | 0.607672 | 4.4:+50167595 | MS.gene88193:CDS |
| ACTTCCGAGAGCCAAGGTGA+GGG | 0.608096 | 4.4:-50167705 | None:intergenic |
| TTGCAGAAGAAAAGGCTGCA+TGG | 0.610809 | 4.4:+50167822 | MS.gene88193:CDS |
| CTGCAAAGATAAAGAGAAGG+AGG | 0.614526 | 4.4:+50166233 | MS.gene88193:CDS |
| AGTTAAGGAAACAAACTGAA+AGG | 0.615070 | 4.4:+50167915 | MS.gene88193:CDS |
| CTTCCACAGTGGAACTGGTG+TGG | 0.616603 | 4.4:-50166136 | None:intergenic |
| ACGGCAATAGAGGATCAGAA+TGG | 0.622780 | 4.4:+50168446 | MS.gene88193:CDS |
| AAGCTCACTTCCGAGAGCCA+AGG | 0.624529 | 4.4:-50167711 | None:intergenic |
| TCTTGGCTAGTGCACTGCAA+AGG | 0.629134 | 4.4:-50168769 | None:intergenic |
| TGAGCAAATGAGAAGCTGCA+AGG | 0.629237 | 4.4:+50166341 | MS.gene88193:CDS |
| GCGTCCACACCAGAACGAAG+TGG | 0.631718 | 4.4:-50166618 | None:intergenic |
| TATTGGGGAAGACAGAGCGC+TGG | 0.631890 | 4.4:+50168066 | MS.gene88193:CDS |
| AGTCCAAATGAAGCTTTCAG+AGG | 0.636988 | 4.4:+50168183 | MS.gene88193:CDS |
| TCAGAAATAGGACTATTACA+TGG | 0.637181 | 4.4:-50166438 | None:intergenic |
| ATGTAATAGTCCTATTTCTG+AGG | 0.639498 | 4.4:+50166440 | MS.gene88193:CDS |
| AGAGAAGCAATCATCGACAA+TGG | 0.653351 | 4.4:+50167682 | MS.gene88193:CDS |
| ACCCTGCAAAGATAAAGAGA+AGG | 0.657910 | 4.4:+50166230 | MS.gene88193:CDS |
| CGGATACAAGACGATGAGGA+CGG | 0.664867 | 4.4:+50168685 | MS.gene88193:CDS |
| AGTTATCCAAGCGAAAAGGA+TGG | 0.665163 | 4.4:+50168469 | MS.gene88193:CDS |
| ATTTGTGATGAACTAGCTAG+AGG | 0.666500 | 4.4:+50168043 | MS.gene88193:CDS |
| TGTAGCTGAAGAGCTTACAG+TGG | 0.676427 | 4.4:+50167886 | MS.gene88193:CDS |
| AGCTCGGATACAAGACGATG+AGG | 0.678318 | 4.4:+50168681 | MS.gene88193:CDS |
| TTACATGGATCTGACATAGG+TGG | 0.679281 | 4.4:-50166423 | None:intergenic |
| GTTTGAAGGACATAATGACT+CGG | 0.680846 | 4.4:+50168378 | MS.gene88193:CDS |
| AATTTGAAGCAAGAAGCTGA+AGG | 0.689873 | 4.4:+50168829 | MS.gene88193:CDS |
| GTTACAGAAGAACAGTGTCA+GGG | 0.691405 | 4.4:+50166586 | MS.gene88193:CDS |
| CCACCACACCAGTTCCACTG+TGG | 0.727949 | 4.4:+50166133 | MS.gene88193:CDS |
| CTGACAAAGAAAGTACAGGG+AGG | 0.786919 | 4.4:+50168518 | MS.gene88193:CDS |
| TCTTATGAGAGAATTCAATG+GGG | 0.795055 | 4.4:+50168544 | MS.gene88193:CDS |
| TTAGTACTAGTCTTCCACAG+TGG | 0.798955 | 4.4:-50166147 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAGAAAATAAAAAT+TGG | + | chr4.4:50167063-50167082 | MS.gene88193:intron | 10.0% |
| !!! | TAATTTAAAATTACATGTTT+TGG | + | chr4.4:50167502-50167521 | MS.gene88193:intron | 10.0% |
| !!! | TAATTTTATTGTAAGAAAAT+AGG | - | chr4.4:50167254-50167273 | None:intergenic | 10.0% |
| !! | ACATATCTAAATTAGAAATG+TGG | + | chr4.4:50166859-50166878 | MS.gene88193:intron | 20.0% |
| !! | ATTGAATTGAACATGAATAA+CGG | + | chr4.4:50168427-50168446 | MS.gene88193:CDS | 20.0% |
| !! | TCTCTCAAATAAATATCTAA+CGG | - | chr4.4:50167230-50167249 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGTGTCAAAATTT+GGG | + | chr4.4:50167123-50167142 | MS.gene88193:intron | 20.0% |
| !!! | TCATTTTGTATTGTGTTATT+TGG | + | chr4.4:50166492-50166511 | MS.gene88193:intron | 20.0% |
| !!! | TTAATTTGTAGTAGTTGAAA+AGG | + | chr4.4:50167150-50167169 | MS.gene88193:intron | 20.0% |
| !!! | TTAATTTTTAGTAGCTTTTC+AGG | + | chr4.4:50167271-50167290 | MS.gene88193:intron | 20.0% |
| !!! | TTGATGATTATGAAAATGAT+GGG | - | chr4.4:50167089-50167108 | None:intergenic | 20.0% |
| !!! | TTTAAAATTACATGTTTTGG+TGG | + | chr4.4:50167505-50167524 | MS.gene88193:intron | 20.0% |
| !!! | TTTTTTTGTGTCAAAATTTG+GGG | + | chr4.4:50167124-50167143 | MS.gene88193:intron | 20.0% |
| ! | AATCTTATGAGAGAATTCAA+TGG | + | chr4.4:50168542-50168561 | MS.gene88193:CDS | 25.0% |
| ! | ACAAACAATAACCTTAAAGA+AGG | + | chr4.4:50165991-50166010 | MS.gene88193:CDS | 25.0% |
| ! | AGAAATTCAATTGAACTATC+GGG | - | chr4.4:50168655-50168674 | None:intergenic | 25.0% |
| ! | ATCTTATGAGAGAATTCAAT+GGG | + | chr4.4:50168543-50168562 | MS.gene88193:CDS | 25.0% |
| ! | CAAAAAAAGGTTGAATAACT+AGG | - | chr4.4:50167112-50167131 | None:intergenic | 25.0% |
| ! | GAGAAATTCAATTGAACTAT+CGG | - | chr4.4:50168656-50168675 | None:intergenic | 25.0% |
| ! | GTTATTCATGTTCAATTCAA+TGG | - | chr4.4:50168428-50168447 | None:intergenic | 25.0% |
| ! | TAGAAATTTACCTCAGAAAT+AGG | - | chr4.4:50166453-50166472 | None:intergenic | 25.0% |
| ! | TTGGATACAAATATTCAAGA+AGG | + | chr4.4:50168613-50168632 | MS.gene88193:CDS | 25.0% |
| !! | TATCAGTGTTAGTTTAAATG+AGG | + | chr4.4:50166644-50166663 | MS.gene88193:CDS | 25.0% |
| !!! | CCAAATTTTGACACAAAAAA+AGG | - | chr4.4:50167125-50167144 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTGTGTCAAAATT+TGG | + | chr4.4:50167122-50167141 | MS.gene88193:intron | 25.0% |
| !!! | GTTGATGATTATGAAAATGA+TGG | - | chr4.4:50167090-50167109 | None:intergenic | 25.0% |
| !!! | TTTTTTGTGTCAAAATTTGG+GGG | + | chr4.4:50167125-50167144 | MS.gene88193:intron | 25.0% |
| AAATTCCAGTTTCAAGAAGA+GGG | + | chr4.4:50168588-50168607 | MS.gene88193:CDS | 30.0% | |
| AACTAGAGATGAAGAAAATG+GGG | + | chr4.4:50168276-50168295 | MS.gene88193:CDS | 30.0% | |
| AATTAATAACCATGACCTCA+TGG | + | chr4.4:50167323-50167342 | MS.gene88193:intron | 30.0% | |
| AGAACTAGAGATGAAGAAAA+TGG | + | chr4.4:50168274-50168293 | MS.gene88193:CDS | 30.0% | |
| AGATTTCACACAACAAAATC+AGG | + | chr4.4:50166022-50166041 | MS.gene88193:CDS | 30.0% | |
| AGTTAAGGAAACAAACTGAA+AGG | + | chr4.4:50167915-50167934 | MS.gene88193:CDS | 30.0% | |
| ATGAAAGGATTTGAAAGTGA+TGG | + | chr4.4:50166564-50166583 | MS.gene88193:CDS | 30.0% | |
| CTTGTATAAGTTTGTCAAGT+AGG | - | chr4.4:50167751-50167770 | None:intergenic | 30.0% | |
| GAACTAGAGATGAAGAAAAT+GGG | + | chr4.4:50168275-50168294 | MS.gene88193:CDS | 30.0% | |
| GTTTGTTTGATTATGACAAG+AGG | - | chr4.4:50165977-50165996 | None:intergenic | 30.0% | |
| TAACAGCAGGCAAAATATAT+AGG | + | chr4.4:50167465-50167484 | MS.gene88193:intron | 30.0% | |
| TCAATTGAAAAAGTAACAGC+AGG | + | chr4.4:50167452-50167471 | MS.gene88193:intron | 30.0% | |
| TCAGAAATAGGACTATTACA+TGG | - | chr4.4:50166441-50166460 | None:intergenic | 30.0% | |
| TCATGTTCAATTCAATGGAT+TGG | - | chr4.4:50168423-50168442 | None:intergenic | 30.0% | |
| TCCTGATAGAGATTAATCAT+TGG | + | chr4.4:50167004-50167023 | MS.gene88193:intron | 30.0% | |
| TCTTATGAGAGAATTCAATG+GGG | + | chr4.4:50168544-50168563 | MS.gene88193:CDS | 30.0% | |
| TTAATCTCTATCAGGAAACT+TGG | - | chr4.4:50167000-50167019 | None:intergenic | 30.0% | |
| TTGATTATGCAGAGAATGAA+AGG | + | chr4.4:50166549-50166568 | MS.gene88193:intron | 30.0% | |
| ! | CTCTTCAGCTACATTTTTAA+CGG | - | chr4.4:50167879-50167898 | None:intergenic | 30.0% |
| ! | GAATTTGAAACCTTGCTTAA+GGG | - | chr4.4:50166941-50166960 | None:intergenic | 30.0% |
| ! | TGAATTTGAAACCTTGCTTA+AGG | - | chr4.4:50166942-50166961 | None:intergenic | 30.0% |
| ! | TTTGAAATAGACCTATTGCT+TGG | - | chr4.4:50168715-50168734 | None:intergenic | 30.0% |
| ! | TTTGAAATGCAGAAGAATAG+TGG | + | chr4.4:50167560-50167579 | MS.gene88193:intron | 30.0% |
| ! | TTTTACACTAGCCATTTCTA+GGG | - | chr4.4:50167957-50167976 | None:intergenic | 30.0% |
| ! | TTTTGTATTCTACAGCTTCA+GGG | + | chr4.4:50166205-50166224 | MS.gene88193:CDS | 30.0% |
| !! | ATGTAATAGTCCTATTTCTG+AGG | + | chr4.4:50166440-50166459 | MS.gene88193:CDS | 30.0% |
| !!! | AAATTACATGTTTTGGTGGT+TGG | + | chr4.4:50167509-50167528 | MS.gene88193:intron | 30.0% |
| AACATGAATAACGGCAATAG+AGG | + | chr4.4:50168436-50168455 | MS.gene88193:CDS | 35.0% | |
| AAGTATGTGAAGAGCTTGAA+AGG | + | chr4.4:50167990-50168009 | MS.gene88193:CDS | 35.0% | |
| AATACTTCACGGCAATAACA+TGG | + | chr4.4:50167038-50167057 | MS.gene88193:intron | 35.0% | |
| AGAGGCTAAGTATCAATTTG+AGG | + | chr4.4:50168201-50168220 | MS.gene88193:CDS | 35.0% | |
| AGTATGTGAAGAGCTTGAAA+GGG | + | chr4.4:50167991-50168010 | MS.gene88193:CDS | 35.0% | |
| ATGTGGTGAGCATATCATAT+TGG | + | chr4.4:50166876-50166895 | MS.gene88193:intron | 35.0% | |
| ATTTGTGATGAACTAGCTAG+AGG | + | chr4.4:50168043-50168062 | MS.gene88193:CDS | 35.0% | |
| CAAAGTCGATGAATACTTCA+CGG | + | chr4.4:50167027-50167046 | MS.gene88193:intron | 35.0% | |
| CAATATTACGCTTGTATGAG+TGG | + | chr4.4:50166901-50166920 | MS.gene88193:intron | 35.0% | |
| CACTCATACAAGCGTAATAT+TGG | - | chr4.4:50166903-50166922 | None:intergenic | 35.0% | |
| CTATTACATGGATCTGACAT+AGG | - | chr4.4:50166429-50166448 | None:intergenic | 35.0% | |
| CTTCATCTTCTTTAGCAAGA+AGG | + | chr4.4:50166067-50166086 | MS.gene88193:CDS | 35.0% | |
| GAAATTCCAGTTTCAAGAAG+AGG | + | chr4.4:50168587-50168606 | MS.gene88193:CDS | 35.0% | |
| GACATCGAAGAAGATTCTTA+AGG | + | chr4.4:50167637-50167656 | MS.gene88193:CDS | 35.0% | |
| GCCAATGATTAATCTCTATC+AGG | - | chr4.4:50167008-50167027 | None:intergenic | 35.0% | |
| GTAGTAGTTGAAAAGGAAGA+TGG | + | chr4.4:50167157-50167176 | MS.gene88193:intron | 35.0% | |
| GTTTGAAGGACATAATGACT+CGG | + | chr4.4:50168378-50168397 | MS.gene88193:CDS | 35.0% | |
| TAAGAAGATTGCCCTAGAAA+TGG | + | chr4.4:50167943-50167962 | MS.gene88193:CDS | 35.0% | |
| TACTAACTCTTCACCTTCTA+TGG | + | chr4.4:50166164-50166183 | MS.gene88193:CDS | 35.0% | |
| TCCTTCTCTTTATCTTTGCA+GGG | - | chr4.4:50166234-50166253 | None:intergenic | 35.0% | |
| TGAAGAAGTGGAAAAAGAGA+GGG | + | chr4.4:50168123-50168142 | MS.gene88193:CDS | 35.0% | |
| TGCTAAAGAAGATGAAGATG+AGG | - | chr4.4:50166064-50166083 | None:intergenic | 35.0% | |
| TTACAGTGGAGAAGAAGTTA+AGG | + | chr4.4:50167900-50167919 | MS.gene88193:CDS | 35.0% | |
| TTCCAAAATGCAGAGTTTGA+AGG | + | chr4.4:50168364-50168383 | MS.gene88193:CDS | 35.0% | |
| ! | AATTTGAAGCAAGAAGCTGA+AGG | + | chr4.4:50168829-50168848 | MS.gene88193:CDS | 35.0% |
| ! | CAACTGACAAAGAAAGTACA+GGG | + | chr4.4:50168515-50168534 | MS.gene88193:CDS | 35.0% |
| ! | CAATGATTTGCATCCTTCAA+GGG | + | chr4.4:50166299-50166318 | MS.gene88193:CDS | 35.0% |
| ! | CAGATTCAAGAGAGCTATTT+TGG | + | chr4.4:50166092-50166111 | MS.gene88193:CDS | 35.0% |
| ! | CTTTTACACTAGCCATTTCT+AGG | - | chr4.4:50167958-50167977 | None:intergenic | 35.0% |
| ! | CTTTTGTATTCTACAGCTTC+AGG | + | chr4.4:50166204-50166223 | MS.gene88193:CDS | 35.0% |
| ! | TCAACTGACAAAGAAAGTAC+AGG | + | chr4.4:50168514-50168533 | MS.gene88193:CDS | 35.0% |
| ! | TCAATGATTTGCATCCTTCA+AGG | + | chr4.4:50166298-50166317 | MS.gene88193:CDS | 35.0% |
| ! | TCGTTGAATTTTGTAGACTC+CGG | - | chr4.4:50168310-50168329 | None:intergenic | 35.0% |
| !! | AAAACTTGCTGCTTCTTTGT+GGG | + | chr4.4:50166272-50166291 | MS.gene88193:CDS | 35.0% |
| !! | AAAGCGTTTTGCAGAAGAAA+AGG | + | chr4.4:50167814-50167833 | MS.gene88193:CDS | 35.0% |
| !! | ATGAACTAGCTAGAGGTATT+GGG | + | chr4.4:50168050-50168069 | MS.gene88193:CDS | 35.0% |
| AAATCCTCTTCTTGTCTTCG+AGG | + | chr4.4:50168801-50168820 | MS.gene88193:CDS | 40.0% | |
| AAGGGTCAAGAAGGAATTTG+AGG | + | chr4.4:50166317-50166336 | MS.gene88193:CDS | 40.0% | |
| AATCCTCTTCTTGTCTTCGA+GGG | + | chr4.4:50168802-50168821 | MS.gene88193:CDS | 40.0% | |
| AATTCCTTCTTGACCCTTGA+AGG | - | chr4.4:50166315-50166334 | None:intergenic | 40.0% | |
| ACCCTGCAAAGATAAAGAGA+AGG | + | chr4.4:50166230-50166249 | MS.gene88193:CDS | 40.0% | |
| AGAGAAGCAATCATCGACAA+TGG | + | chr4.4:50167682-50167701 | MS.gene88193:CDS | 40.0% | |
| AGTCCAAATGAAGCTTTCAG+AGG | + | chr4.4:50168183-50168202 | MS.gene88193:CDS | 40.0% | |
| AGTTATCCAAGCGAAAAGGA+TGG | + | chr4.4:50168469-50168488 | MS.gene88193:CDS | 40.0% | |
| ATGGAGTTATCCAAGCGAAA+AGG | + | chr4.4:50168465-50168484 | MS.gene88193:CDS | 40.0% | |
| CAAATCCCTCTTCTTGAAAC+TGG | - | chr4.4:50168596-50168615 | None:intergenic | 40.0% | |
| CAGTTTCAAGAAGAGGGATT+TGG | + | chr4.4:50168594-50168613 | MS.gene88193:CDS | 40.0% | |
| CCAGAACGACATTGAGTATA+TGG | + | chr4.4:50167790-50167809 | MS.gene88193:CDS | 40.0% | |
| CCATATACTCAATGTCGTTC+TGG | - | chr4.4:50167793-50167812 | None:intergenic | 40.0% | |
| CTCCTTCTCTTTATCTTTGC+AGG | - | chr4.4:50166235-50166254 | None:intergenic | 40.0% | |
| CTGCAAAGATAAAGAGAAGG+AGG | + | chr4.4:50166233-50166252 | MS.gene88193:CDS | 40.0% | |
| GAAGAATAGTGGCAAATTCG+CGG | + | chr4.4:50167571-50167590 | MS.gene88193:intron | 40.0% | |
| GATGAGATCAGTGATTTCTG+AGG | - | chr4.4:50167351-50167370 | None:intergenic | 40.0% | |
| GATGGAACTTCACTAAACGT+GGG | + | chr4.4:50166971-50166990 | MS.gene88193:intron | 40.0% | |
| GCTAAGAGTTTGTCAAGATC+AGG | + | chr4.4:50166390-50166409 | MS.gene88193:CDS | 40.0% | |
| GGAGGAAATGAAAAAGGAGT+CGG | + | chr4.4:50168090-50168109 | MS.gene88193:CDS | 40.0% | |
| GGTTAAAGTTCGTGAAGAAG+TGG | + | chr4.4:50168111-50168130 | MS.gene88193:CDS | 40.0% | |
| GGTTTCAAATTCAAGTCCTG+TGG | + | chr4.4:50166949-50166968 | MS.gene88193:intron | 40.0% | |
| GTGAAGAAGTGGAAAAAGAG+AGG | + | chr4.4:50168122-50168141 | MS.gene88193:CDS | 40.0% | |
| GTTACAGAAGAACAGTGTCA+GGG | + | chr4.4:50166586-50166605 | MS.gene88193:CDS | 40.0% | |
| TCAAATTCAAGTCCTGTGGA+TGG | + | chr4.4:50166953-50166972 | MS.gene88193:intron | 40.0% | |
| TGTGTAGTGTTCTCCATAGA+AGG | - | chr4.4:50166180-50166199 | None:intergenic | 40.0% | |
| TTACATGGATCTGACATAGG+TGG | - | chr4.4:50166426-50166445 | None:intergenic | 40.0% | |
| TTATCTCATCCACTTCGTTC+TGG | + | chr4.4:50166609-50166628 | MS.gene88193:CDS | 40.0% | |
| TTGAATTTCTCTCTCGAGCT+CGG | + | chr4.4:50168665-50168684 | MS.gene88193:CDS | 40.0% | |
| TTTAGTGAAGTTCCATCCAC+AGG | - | chr4.4:50166968-50166987 | None:intergenic | 40.0% | |
| ! | GAGGATTTTCTCTTGCTTCT+TGG | - | chr4.4:50168789-50168808 | None:intergenic | 40.0% |
| ! | GATGAACTAGCTAGAGGTAT+TGG | + | chr4.4:50168049-50168068 | MS.gene88193:CDS | 40.0% |
| ! | GTCCTTCAAACTCTGCATTT+TGG | - | chr4.4:50168369-50168388 | None:intergenic | 40.0% |
| ! | TAGCCTCTGAAAGCTTCATT+TGG | - | chr4.4:50168189-50168208 | None:intergenic | 40.0% |
| ! | TTTTGACCATCCTTTTCGCT+TGG | - | chr4.4:50168478-50168497 | None:intergenic | 40.0% |
| !! | AGGAAGATGGACTGCAATAA+TGG | + | chr4.4:50167170-50167189 | MS.gene88193:intron | 40.0% |
| !! | GAAAACTTGCTGCTTCTTTG+TGG | + | chr4.4:50166271-50166290 | MS.gene88193:CDS | 40.0% |
| !! | TACTTCTAGCTTCCTTCAGA+TGG | - | chr4.4:50167610-50167629 | None:intergenic | 40.0% |
| !! | TCTCTCTGAGACCTTCTTTA+AGG | - | chr4.4:50166005-50166024 | None:intergenic | 40.0% |
| !! | TGAACTAGCTAGAGGTATTG+GGG | + | chr4.4:50168051-50168070 | MS.gene88193:CDS | 40.0% |
| !! | TGTCAAGATCAGGTTTGTTG+AGG | + | chr4.4:50166400-50166419 | MS.gene88193:CDS | 40.0% |
| !! | TTAGTACTAGTCTTCCACAG+TGG | - | chr4.4:50166150-50166169 | None:intergenic | 40.0% |
| !! | TTTTGGCTGGAAAGAAAGGA+GGG | + | chr4.4:50166109-50166128 | MS.gene88193:CDS | 40.0% |
| !!! | ATTTTGGCTGGAAAGAAAGG+AGG | + | chr4.4:50166108-50166127 | MS.gene88193:CDS | 40.0% |
| !!! | GCTATTTTGGCTGGAAAGAA+AGG | + | chr4.4:50166105-50166124 | MS.gene88193:CDS | 40.0% |
| !!! | TAGTAGCTTTTCAGGTGCAT+TGG | + | chr4.4:50167279-50167298 | MS.gene88193:intron | 40.0% |
| !!! | TTCAAGAGAGCTATTTTGGC+TGG | + | chr4.4:50166096-50166115 | MS.gene88193:CDS | 40.0% |
| AATAGTGGCAAATTCGCGGT+TGG | + | chr4.4:50167575-50167594 | MS.gene88193:CDS | 45.0% | |
| ACGGCAATAGAGGATCAGAA+TGG | + | chr4.4:50168446-50168465 | MS.gene88193:CDS | 45.0% | |
| AGAAAATGGGGATGCTTCTC+CGG | + | chr4.4:50168288-50168307 | MS.gene88193:CDS | 45.0% | |
| GCTGGTGGAGGAAATGAAAA+AGG | + | chr4.4:50168084-50168103 | MS.gene88193:CDS | 45.0% | |
| GGATGGAACTTCACTAAACG+TGG | + | chr4.4:50166970-50166989 | MS.gene88193:intron | 45.0% | |
| GGTTACAGAAGAACAGTGTC+AGG | + | chr4.4:50166585-50166604 | MS.gene88193:CDS | 45.0% | |
| TACGCTTGTATGAGTGGAAC+TGG | + | chr4.4:50166907-50166926 | MS.gene88193:intron | 45.0% | |
| TCTAACGGTCTCAACTCTCA+TGG | - | chr4.4:50167215-50167234 | None:intergenic | 45.0% | |
| TGAGCAAATGAGAAGCTGCA+AGG | + | chr4.4:50166341-50166360 | MS.gene88193:CDS | 45.0% | |
| TGTAGCTGAAGAGCTTACAG+TGG | + | chr4.4:50167886-50167905 | MS.gene88193:CDS | 45.0% | |
| TGTATGAGTGGAACTGGACT+GGG | + | chr4.4:50166913-50166932 | MS.gene88193:intron | 45.0% | |
| TTGCAGAAGAAAAGGCTGCA+TGG | + | chr4.4:50167822-50167841 | MS.gene88193:CDS | 45.0% | |
| TTGTATGAGTGGAACTGGAC+TGG | + | chr4.4:50166912-50166931 | MS.gene88193:intron | 45.0% | |
| ! | AGGACATAATGACTCGGATG+AGG | + | chr4.4:50168384-50168403 | MS.gene88193:CDS | 45.0% |
| ! | CTGACAAAGAAAGTACAGGG+AGG | + | chr4.4:50168518-50168537 | MS.gene88193:CDS | 45.0% |
| !!! | ACATGTTTTGGTGGTTGGCA+AGG | + | chr4.4:50167514-50167533 | MS.gene88193:intron | 45.0% |
| AGCTCGGATACAAGACGATG+AGG | + | chr4.4:50168681-50168700 | MS.gene88193:CDS | 50.0% | |
| AGTGAGCTTGATCGGGTTTG+CGG | + | chr4.4:50167725-50167744 | MS.gene88193:CDS | 50.0% | |
| CGGATACAAGACGATGAGGA+CGG | + | chr4.4:50168685-50168704 | MS.gene88193:CDS | 50.0% | |
| CTCTCGGAAGTGAGCTTGAT+CGG | + | chr4.4:50167717-50167736 | MS.gene88193:CDS | 50.0% | |
| GCATCCTTCAAGGGTCAAGA+AGG | + | chr4.4:50166308-50166327 | MS.gene88193:CDS | 50.0% | |
| TCACCCTCGAAGACAAGAAG+AGG | - | chr4.4:50168808-50168827 | None:intergenic | 50.0% | |
| TCATCCACTTCGTTCTGGTG+TGG | + | chr4.4:50166614-50166633 | MS.gene88193:CDS | 50.0% | |
| TCTCGGAAGTGAGCTTGATC+GGG | + | chr4.4:50167718-50167737 | MS.gene88193:CDS | 50.0% | |
| TCTTGGCTAGTGCACTGCAA+AGG | - | chr4.4:50168772-50168791 | None:intergenic | 50.0% | |
| TGGAGTGAAGAGCCATCTGA+AGG | + | chr4.4:50167595-50167614 | MS.gene88193:CDS | 50.0% | |
| ! | CTAGTCTTCCACAGTGGAAC+TGG | - | chr4.4:50166144-50166163 | None:intergenic | 50.0% |
| ! | GTGATTTCTGAGGAGCCATG+AGG | - | chr4.4:50167341-50167360 | None:intergenic | 50.0% |
| ! | GTTAGCAGATGTTTTGCGCG+AGG | + | chr4.4:50168156-50168175 | MS.gene88193:CDS | 50.0% |
| AAGCTCACTTCCGAGAGCCA+AGG | - | chr4.4:50167714-50167733 | None:intergenic | 55.0% | |
| ACTTCCGAGAGCCAAGGTGA+GGG | - | chr4.4:50167708-50167727 | None:intergenic | 55.0% | |
| AGGACGGCACTCCAAGCAAT+AGG | + | chr4.4:50168701-50168720 | MS.gene88193:CDS | 55.0% | |
| ATCGACAATGGCCCTCACCT+TGG | + | chr4.4:50167694-50167713 | MS.gene88193:CDS | 55.0% | |
| CTTCCACAGTGGAACTGGTG+TGG | - | chr4.4:50166139-50166158 | None:intergenic | 55.0% | |
| GGACTGGGATCCCTTAAGCA+AGG | + | chr4.4:50166928-50166947 | MS.gene88193:intron | 55.0% | |
| TATTGGGGAAGACAGAGCGC+TGG | + | chr4.4:50168066-50168085 | MS.gene88193:CDS | 55.0% | |
| TCTGAGGAGCCATGAGGTCA+TGG | - | chr4.4:50167335-50167354 | None:intergenic | 55.0% | |
| CACTTCCGAGAGCCAAGGTG+AGG | - | chr4.4:50167709-50167728 | None:intergenic | 60.0% | |
| CCACAGTGGAACTGGTGTGG+TGG | - | chr4.4:50166136-50166155 | None:intergenic | 60.0% | |
| CCACCACACCAGTTCCACTG+TGG | + | chr4.4:50166133-50166152 | MS.gene88193:CDS | 60.0% | |
| GCGTCCACACCAGAACGAAG+TGG | - | chr4.4:50166621-50166640 | None:intergenic | 60.0% | |
| ! | ATGGCCCTCACCTTGGCTCT+CGG | + | chr4.4:50167701-50167720 | MS.gene88193:CDS | 60.0% |
| !! | GGAAGACAGAGCGCTGGTGG+AGG | + | chr4.4:50168072-50168091 | MS.gene88193:CDS | 65.0% |
| !! | TGGGGAAGACAGAGCGCTGG+TGG | + | chr4.4:50168069-50168088 | MS.gene88193:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 50165970 | 50168897 | 50165970 | ID=MS.gene88193 |
| chr4.4 | mRNA | 50165970 | 50168897 | 50165970 | ID=MS.gene88193.t1;Parent=MS.gene88193 |
| chr4.4 | exon | 50165970 | 50166461 | 50165970 | ID=MS.gene88193.t1.exon1;Parent=MS.gene88193.t1 |
| chr4.4 | CDS | 50165970 | 50166461 | 50165970 | ID=cds.MS.gene88193.t1;Parent=MS.gene88193.t1 |
| chr4.4 | exon | 50166561 | 50166665 | 50166561 | ID=MS.gene88193.t1.exon2;Parent=MS.gene88193.t1 |
| chr4.4 | CDS | 50166561 | 50166665 | 50166561 | ID=cds.MS.gene88193.t1;Parent=MS.gene88193.t1 |
| chr4.4 | exon | 50167572 | 50168897 | 50167572 | ID=MS.gene88193.t1.exon3;Parent=MS.gene88193.t1 |
| chr4.4 | CDS | 50167572 | 50168897 | 50167572 | ID=cds.MS.gene88193.t1;Parent=MS.gene88193.t1 |
| Gene Sequence |
| Protein sequence |
