Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88198.t1 | XP_013455796.1 | 92.4 | 344 | 24 | 1 | 1 | 342 | 1 | 344 | 1.80E-159 | 572 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88198.t1 | Q9XIN8 | 38.8 | 317 | 183 | 4 | 25 | 334 | 16 | 328 | 2.5e-56 | 220.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88198.t1 | A0A072UJI1 | 92.4 | 344 | 24 | 1 | 1 | 342 | 1 | 344 | 1.3e-159 | 572.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050363 | MS.gene88198 | 0.826706 | 2.34E-54 | -1.69E-46 |
| MS.gene050381 | MS.gene88198 | 0.818137 | 2.29E-52 | -1.69E-46 |
| MS.gene050883 | MS.gene88198 | 0.833873 | 4.15E-56 | -1.69E-46 |
| MS.gene051127 | MS.gene88198 | 0.84598 | 2.90E-59 | -1.69E-46 |
| MS.gene051946 | MS.gene88198 | 0.836526 | 8.89E-57 | -1.69E-46 |
| MS.gene052089 | MS.gene88198 | 0.805003 | 1.65E-49 | -1.69E-46 |
| MS.gene052566 | MS.gene88198 | 0.812727 | 3.67E-51 | -1.69E-46 |
| MS.gene053420 | MS.gene88198 | 0.83227 | 1.04E-55 | -1.69E-46 |
| MS.gene053561 | MS.gene88198 | 0.830019 | 3.72E-55 | -1.69E-46 |
| MS.gene053826 | MS.gene88198 | 0.809944 | 1.47E-50 | -1.69E-46 |
| MS.gene055549 | MS.gene88198 | 0.809697 | 1.66E-50 | -1.69E-46 |
| MS.gene055550 | MS.gene88198 | 0.816402 | 5.63E-52 | -1.69E-46 |
| MS.gene056310 | MS.gene88198 | 0.824017 | 1.01E-53 | -1.69E-46 |
| MS.gene056311 | MS.gene88198 | 0.875937 | 2.08E-68 | -1.69E-46 |
| MS.gene057014 | MS.gene88198 | 0.839337 | 1.68E-57 | -1.69E-46 |
| MS.gene058171 | MS.gene88198 | 0.844456 | 7.48E-59 | -1.69E-46 |
| MS.gene058173 | MS.gene88198 | 0.840369 | 9.06E-58 | -1.69E-46 |
| MS.gene058175 | MS.gene88198 | 0.84218 | 3.03E-58 | -1.69E-46 |
| MS.gene058493 | MS.gene88198 | 0.862918 | 3.60E-64 | -1.69E-46 |
| MS.gene058494 | MS.gene88198 | 0.859807 | 3.20E-63 | -1.69E-46 |
| MS.gene058496 | MS.gene88198 | 0.819738 | 9.92E-53 | -1.69E-46 |
| MS.gene058628 | MS.gene88198 | 0.831974 | 1.23E-55 | -1.69E-46 |
| MS.gene058629 | MS.gene88198 | 0.814828 | 1.26E-51 | -1.69E-46 |
| MS.gene058630 | MS.gene88198 | 0.827335 | 1.66E-54 | -1.69E-46 |
| MS.gene05884 | MS.gene88198 | 0.833067 | 6.60E-56 | -1.69E-46 |
| MS.gene059223 | MS.gene88198 | 0.801135 | 1.04E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88198.t1 | MTR_4g052460 | 92.733 | 344 | 23 | 1 | 1 | 342 | 1 | 344 | 0.0 | 598 |
| MS.gene88198.t1 | MTR_2g086920 | 51.227 | 326 | 139 | 6 | 19 | 339 | 3 | 313 | 8.36e-97 | 290 |
| MS.gene88198.t1 | MTR_7g105320 | 42.994 | 314 | 172 | 4 | 27 | 339 | 23 | 330 | 3.95e-67 | 214 |
| MS.gene88198.t1 | MTR_3g466350 | 45.149 | 268 | 137 | 9 | 27 | 289 | 12 | 274 | 1.63e-63 | 203 |
| MS.gene88198.t1 | MTR_1g058490 | 40.138 | 289 | 164 | 4 | 13 | 300 | 8 | 288 | 3.00e-61 | 199 |
| MS.gene88198.t1 | MTR_3g466280 | 38.710 | 279 | 141 | 8 | 17 | 289 | 2 | 256 | 1.82e-44 | 153 |
| MS.gene88198.t1 | MTR_8g021080 | 37.638 | 271 | 138 | 14 | 27 | 287 | 10 | 259 | 2.50e-42 | 148 |
| MS.gene88198.t1 | MTR_8g022730 | 36.170 | 282 | 145 | 9 | 27 | 289 | 10 | 275 | 4.30e-40 | 142 |
| MS.gene88198.t1 | MTR_3g466300 | 37.968 | 187 | 95 | 5 | 17 | 200 | 2 | 170 | 1.67e-29 | 113 |
| MS.gene88198.t1 | MTR_3g466330 | 35.656 | 244 | 112 | 12 | 27 | 260 | 12 | 220 | 3.95e-28 | 109 |
| MS.gene88198.t1 | MTR_1g072360 | 25.806 | 372 | 220 | 12 | 19 | 339 | 7 | 373 | 8.54e-28 | 112 |
| MS.gene88198.t1 | MTR_1g072360 | 26.146 | 371 | 218 | 12 | 20 | 339 | 28 | 393 | 1.19e-27 | 112 |
| MS.gene88198.t1 | MTR_5g013660 | 31.333 | 300 | 171 | 10 | 24 | 288 | 7 | 306 | 5.47e-27 | 108 |
| MS.gene88198.t1 | MTR_8g021090 | 54.762 | 84 | 33 | 2 | 44 | 125 | 4 | 84 | 3.85e-20 | 84.3 |
| MS.gene88198.t1 | MTR_1g060460 | 31.081 | 148 | 75 | 3 | 18 | 162 | 39 | 162 | 2.60e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88198.t1 | AT2G27310 | 40.308 | 325 | 183 | 4 | 17 | 334 | 8 | 328 | 6.68e-80 | 247 |
| MS.gene88198.t1 | AT3G44326 | 41.534 | 313 | 174 | 4 | 14 | 319 | 14 | 324 | 2.25e-74 | 234 |
| MS.gene88198.t1 | AT2G36090 | 40.060 | 332 | 168 | 6 | 12 | 337 | 5 | 311 | 1.49e-66 | 212 |
Find 115 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGAAGAGGGAGAGATTA+AGG | 0.215549 | 4.4:+50118804 | MS.gene88198:CDS |
| AGAGATTCTTGGGGATGATT+AGG | 0.229501 | 4.4:+50118836 | MS.gene88198:CDS |
| GTCGTTACATATTGGAATTT+TGG | 0.261967 | 4.4:+50118381 | MS.gene88198:CDS |
| GGAGAGGTTTGAGAGATTCT+TGG | 0.298569 | 4.4:+50118825 | MS.gene88198:CDS |
| TTGATGAAGGCAATGGAGTT+TGG | 0.301638 | 4.4:+50118766 | MS.gene88198:CDS |
| GAGATTCTTGGGGATGATTA+GGG | 0.305754 | 4.4:+50118837 | MS.gene88198:CDS |
| GAGAGGTTTGAGAGATTCTT+GGG | 0.323355 | 4.4:+50118826 | MS.gene88198:CDS |
| ATGGAAGGAGGGGAGGTTAG+TGG | 0.343393 | 4.4:+50118724 | MS.gene88198:CDS |
| TCACATGTTGTGGGAAAGTT+GGG | 0.344634 | 4.4:+50118659 | MS.gene88198:CDS |
| CTCACGTCGTCGTTACATAT+TGG | 0.344973 | 4.4:+50118373 | MS.gene88198:CDS |
| AGAGGAGAGAGATGAAGTTT+AGG | 0.346170 | 4.4:+50118860 | MS.gene88198:CDS |
| CGAAGAATGGATGAAGCATT+TGG | 0.348270 | 4.4:+50118450 | MS.gene88198:CDS |
| TCTGCATGGAGAATGATCTA+TGG | 0.367648 | 4.4:+50118098 | MS.gene88198:CDS |
| GGGTTTAGTGATGGAGGATA+TGG | 0.368384 | 4.4:+50118705 | MS.gene88198:CDS |
| AAACGGAACGGTGGCCATTT+GGG | 0.375591 | 4.4:-50118189 | None:intergenic |
| TACTAAAACCGGCTTCCGGC+TGG | 0.377691 | 4.4:-50118536 | None:intergenic |
| AGAGCAGGTGGAGGCGGTGG+TGG | 0.377816 | 4.4:-50118062 | None:intergenic |
| TTGCCTTTGTTGTTTGTGTT+TGG | 0.380953 | 4.4:+50118917 | MS.gene88198:CDS |
| GGGGAGGTTAGTGGGAAAGA+AGG | 0.385552 | 4.4:+50118733 | MS.gene88198:CDS |
| GGGAGGTTAGTGGGAAAGAA+GGG | 0.388191 | 4.4:+50118734 | MS.gene88198:CDS |
| AAAACGGAACGGTGGCCATT+TGG | 0.388811 | 4.4:-50118190 | None:intergenic |
| GTCACATGTTGTGGGAAAGT+TGG | 0.401924 | 4.4:+50118658 | MS.gene88198:CDS |
| GTGAGAGCAGGTGGAGGCGG+TGG | 0.407808 | 4.4:-50118065 | None:intergenic |
| GGCGTTGGAACCAACTCGTT+TGG | 0.409161 | 4.4:-50118406 | None:intergenic |
| GTCATTTCTACTTTCCCAAA+TGG | 0.423462 | 4.4:+50118175 | MS.gene88198:CDS |
| AGGAAGAAAGTTAGTGAAGA+GGG | 0.423494 | 4.4:+50118793 | MS.gene88198:CDS |
| CGTTTCAGTTCGTTGGACTC+TGG | 0.425096 | 4.4:-50118335 | None:intergenic |
| TGATGAAGGCATCTTGCTTT+CGG | 0.428926 | 4.4:-50117951 | None:intergenic |
| AAGATAATTTATCTTTAAGC+TGG | 0.435053 | 4.4:+50118473 | MS.gene88198:CDS |
| GAAAAGAATCTCCACGTCTC+TGG | 0.437552 | 4.4:-50118575 | None:intergenic |
| GGAGGGTGAGGATGTGTGTA+TGG | 0.452237 | 4.4:-50118021 | None:intergenic |
| TGAATTGTACATGAGGGAGG+TGG | 0.452744 | 4.4:+50118684 | MS.gene88198:CDS |
| GGAGGTTAGTGGGAAAGAAG+GGG | 0.454643 | 4.4:+50118735 | MS.gene88198:CDS |
| TAACGTTTCCAGCCGGAAGC+CGG | 0.471112 | 4.4:+50118528 | MS.gene88198:CDS |
| GAGGTGAGAGCAGGTGGAGG+CGG | 0.475990 | 4.4:-50118068 | None:intergenic |
| GAATTGTACATGAGGGAGGT+GGG | 0.479391 | 4.4:+50118685 | MS.gene88198:CDS |
| CAGTGTCGTCGTACTAAAAC+CGG | 0.479464 | 4.4:-50118547 | None:intergenic |
| CTAACAAACTTCACCGGCGT+TGG | 0.481832 | 4.4:-50118421 | None:intergenic |
| ATGGCGGAGGTGAGAGCAGG+TGG | 0.483642 | 4.4:-50118074 | None:intergenic |
| TGATGGAGGATATGGAAGGA+GGG | 0.494047 | 4.4:+50118713 | MS.gene88198:CDS |
| ATAATTTCTTCTGGCGGAGG+AGG | 0.494129 | 4.4:-50118271 | None:intergenic |
| ACAGCGGAGATAATTTCTTC+TGG | 0.497606 | 4.4:-50118280 | None:intergenic |
| AACCGAGATGGTGCAGTGTA+TGG | 0.497829 | 4.4:+50118630 | MS.gene88198:CDS |
| GGGAAATGCGTCTGAGAAAA+CGG | 0.499238 | 4.4:-50118206 | None:intergenic |
| GAGATGGCGGAGGTGAGAGC+AGG | 0.499962 | 4.4:-50118077 | None:intergenic |
| TTAGTGGGAAAGAAGGGGTT+GGG | 0.502371 | 4.4:+50118740 | MS.gene88198:CDS |
| AAACCAAACACAAACAACAA+AGG | 0.507178 | 4.4:-50118920 | None:intergenic |
| GAGGAAGAAAGTTAGTGAAG+AGG | 0.507557 | 4.4:+50118792 | MS.gene88198:CDS |
| AGGCAATGGAGTTTGGAGAG+AGG | 0.507885 | 4.4:+50118773 | MS.gene88198:CDS |
| GTCGTACTAAAACCGGCTTC+CGG | 0.507928 | 4.4:-50118540 | None:intergenic |
| CGAGCGTGGCGGCGTCGAGG+AGG | 0.509249 | 4.4:-50118039 | None:intergenic |
| AGAAGAGAAATGATGAAGAG+TGG | 0.509282 | 4.4:-50118227 | None:intergenic |
| TCTTGGGGATGATTAGGGAG+AGG | 0.511981 | 4.4:+50118842 | MS.gene88198:CDS |
| AAATGACATGGCTGGTGGTA+GGG | 0.513318 | 4.4:-50118159 | None:intergenic |
| GGAGGCGGTGGTGGCGAGCG+TGG | 0.520762 | 4.4:-50118053 | None:intergenic |
| GAGCGTGGCGGCGTCGAGGA+GGG | 0.520945 | 4.4:-50118038 | None:intergenic |
| TGGCGGCGTCGAGGAGGGTG+AGG | 0.521513 | 4.4:-50118033 | None:intergenic |
| GATGGAGGATATGGAAGGAG+GGG | 0.527638 | 4.4:+50118714 | MS.gene88198:CDS |
| GCGGAGGTGAGAGCAGGTGG+AGG | 0.532248 | 4.4:-50118071 | None:intergenic |
| TGGAAGGAGGGGAGGTTAGT+GGG | 0.535058 | 4.4:+50118725 | MS.gene88198:CDS |
| GAGATAATTTCTTCTGGCGG+AGG | 0.537022 | 4.4:-50118274 | None:intergenic |
| GAAGAGAAATGATGAAGAGT+GGG | 0.540367 | 4.4:-50118226 | None:intergenic |
| AGGGGTTGGGATATTGATGA+AGG | 0.541560 | 4.4:+50118753 | MS.gene88198:CDS |
| TCTTCTGGCGGAGGAGGTGA+CGG | 0.543022 | 4.4:-50118265 | None:intergenic |
| GGAGGATATGGAAGGAGGGG+AGG | 0.549136 | 4.4:+50118717 | MS.gene88198:CDS |
| GTTAGTGGGAAAGAAGGGGT+TGG | 0.549347 | 4.4:+50118739 | MS.gene88198:CDS |
| GTGATGGAGGATATGGAAGG+AGG | 0.549456 | 4.4:+50118712 | MS.gene88198:CDS |
| GAAATGACATGGCTGGTGGT+AGG | 0.549733 | 4.4:-50118160 | None:intergenic |
| TGGATCATCATCGACCCGAC+TGG | 0.552660 | 4.4:+50118493 | MS.gene88198:CDS |
| AAGAGGGAGAGATTAAGGAG+AGG | 0.553582 | 4.4:+50118809 | MS.gene88198:CDS |
| GAGGGAGGTGGGTTTAGTGA+TGG | 0.554808 | 4.4:+50118696 | MS.gene88198:CDS |
| CACCATACACTGCACCATCT+CGG | 0.557575 | 4.4:-50118632 | None:intergenic |
| CGACCCGACTGGAAAACGTT+CGG | 0.562061 | 4.4:+50118504 | MS.gene88198:CDS |
| TAGTAACGACGGCCACGTCT+CGG | 0.566856 | 4.4:-50118134 | None:intergenic |
| ACGTGATGGTGTTTCTACCT+TGG | 0.568427 | 4.4:+50118894 | MS.gene88198:CDS |
| TCACCTCCGCCATCTCTGCA+TGG | 0.574557 | 4.4:+50118084 | MS.gene88198:CDS |
| AGAGGTTTGAGAGATTCTTG+GGG | 0.575327 | 4.4:+50118827 | MS.gene88198:CDS |
| TGGCGAGCGTGGCGGCGTCG+AGG | 0.580460 | 4.4:-50118042 | None:intergenic |
| GGCGGTGGTGGCGAGCGTGG+CGG | 0.580799 | 4.4:-50118050 | None:intergenic |
| GGAGGTGGGTTTAGTGATGG+AGG | 0.590038 | 4.4:+50118699 | MS.gene88198:CDS |
| TGGGATATTGATGAAGGCAA+TGG | 0.590881 | 4.4:+50118759 | MS.gene88198:CDS |
| CACATGTTGTGGGAAAGTTG+GGG | 0.596822 | 4.4:+50118660 | MS.gene88198:CDS |
| GTTCGGCTAACGTTTCCAGC+CGG | 0.597755 | 4.4:+50118521 | MS.gene88198:CDS |
| TGTGTGTATGGAGGATATCA+TGG | 0.599190 | 4.4:-50118009 | None:intergenic |
| GTGGTGATGCTTGATGATGA+TGG | 0.600826 | 4.4:-50117980 | None:intergenic |
| GATGAAGTTTAGGAGACAGA+AGG | 0.610563 | 4.4:+50118870 | MS.gene88198:CDS |
| ACAAACAACAAAGGCAACCA+AGG | 0.610841 | 4.4:-50118911 | None:intergenic |
| GGGTGAGGATGTGTGTATGG+AGG | 0.612682 | 4.4:-50118018 | None:intergenic |
| ATGGTGAAGGTCACATGTTG+TGG | 0.617608 | 4.4:+50118649 | MS.gene88198:CDS |
| GATCATTCTCCATGCAGAGA+TGG | 0.622749 | 4.4:-50118093 | None:intergenic |
| GATGATGGTGATGATGATGA+AGG | 0.626211 | 4.4:-50117965 | None:intergenic |
| CATTCTCCATGCAGAGATGG+CGG | 0.627900 | 4.4:-50118090 | None:intergenic |
| GCGGAGATAATTTCTTCTGG+CGG | 0.629551 | 4.4:-50118277 | None:intergenic |
| AAACGAGTTGGTTCCAACGC+CGG | 0.635540 | 4.4:+50118408 | MS.gene88198:CDS |
| GGGTGAATTGTACATGAGGG+AGG | 0.635710 | 4.4:+50118681 | MS.gene88198:CDS |
| TCTCCATGCAGAGATGGCGG+AGG | 0.639270 | 4.4:-50118087 | None:intergenic |
| TGGTGAAGGTCACATGTTGT+GGG | 0.639670 | 4.4:+50118650 | MS.gene88198:CDS |
| GAAAGTAGAAATGACATGGC+TGG | 0.639787 | 4.4:-50118167 | None:intergenic |
| GACACGACGATCAACCGAGA+TGG | 0.646744 | 4.4:+50118618 | MS.gene88198:CDS |
| TCTGGCGGAGGAGGTGACGG+AGG | 0.649651 | 4.4:-50118262 | None:intergenic |
| AGAAGAAATTATCTCCGCTG+TGG | 0.653889 | 4.4:+50118282 | MS.gene88198:CDS |
| ACATGTTGTGGGAAAGTTGG+GGG | 0.659343 | 4.4:+50118661 | MS.gene88198:CDS |
| ATGGAGGATATCATGGTGCA+TGG | 0.661981 | 4.4:-50118002 | None:intergenic |
| AGTAGAAATGACATGGCTGG+TGG | 0.663306 | 4.4:-50118164 | None:intergenic |
| TTGGGAAAGTAGAAATGACA+TGG | 0.669313 | 4.4:-50118171 | None:intergenic |
| ACACTGGCTAACCAGAGACG+TGG | 0.669419 | 4.4:+50118564 | MS.gene88198:CDS |
| AGGAGACAGAAGGTACGTGA+TGG | 0.670571 | 4.4:+50118880 | MS.gene88198:CDS |
| GATGGTGCAGTGTATGGTGA+AGG | 0.676588 | 4.4:+50118636 | MS.gene88198:CDS |
| CGTCTGAGAAAACGGAACGG+TGG | 0.706736 | 4.4:-50118198 | None:intergenic |
| TTAGTGATGGAGGATATGGA+AGG | 0.707771 | 4.4:+50118709 | MS.gene88198:CDS |
| GTGGTAGGGTCTAGTAACGA+CGG | 0.716522 | 4.4:-50118145 | None:intergenic |
| ATGCGTCTGAGAAAACGGAA+CGG | 0.751594 | 4.4:-50118201 | None:intergenic |
| GCTGTGGATATACACTACAG+AGG | 0.760040 | 4.4:+50118298 | MS.gene88198:CDS |
| GAGGATATCATGGTGCATGG+TGG | 0.775676 | 4.4:-50117999 | None:intergenic |
| TCTGTAGTGTATATCCACAG+CGG | 0.804391 | 4.4:-50118296 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATAATTTATCTTTAAGC+TGG | + | chr4.4:50118473-50118492 | MS.gene88198:CDS | 20.0% |
| ! | TTGTTAGAAAAAACGAAGAA+TGG | + | chr4.4:50118437-50118456 | MS.gene88198:CDS | 25.0% |
| !!! | TTTTTTCTAACAAACTTCAC+CGG | - | chr4.4:50118430-50118449 | None:intergenic | 25.0% |
| AAACCAAACACAAACAACAA+AGG | - | chr4.4:50118923-50118942 | None:intergenic | 30.0% | |
| ! | GTCGTTACATATTGGAATTT+TGG | + | chr4.4:50118381-50118400 | MS.gene88198:CDS | 30.0% |
| !!! | TTGTGTTTGGTTTTGTTACT+TGG | + | chr4.4:50118930-50118949 | MS.gene88198:CDS | 30.0% |
| AGAAGAGAAATGATGAAGAG+TGG | - | chr4.4:50118230-50118249 | None:intergenic | 35.0% | |
| AGGAAGAAAGTTAGTGAAGA+GGG | + | chr4.4:50118793-50118812 | MS.gene88198:CDS | 35.0% | |
| GAAGAGAAATGATGAAGAGT+GGG | - | chr4.4:50118229-50118248 | None:intergenic | 35.0% | |
| GTCATTTCTACTTTCCCAAA+TGG | + | chr4.4:50118175-50118194 | MS.gene88198:CDS | 35.0% | |
| TTGGGAAAGTAGAAATGACA+TGG | - | chr4.4:50118174-50118193 | None:intergenic | 35.0% | |
| !! | TCTTTTTCGTTTCAGTTCGT+TGG | - | chr4.4:50118345-50118364 | None:intergenic | 35.0% |
| !! | TTGCCTTTGTTGTTTGTGTT+TGG | + | chr4.4:50118917-50118936 | MS.gene88198:CDS | 35.0% |
| !!! | AATTTTGGAACCAAACGAGT+TGG | + | chr4.4:50118396-50118415 | MS.gene88198:CDS | 35.0% |
| ACAAACAACAAAGGCAACCA+AGG | - | chr4.4:50118914-50118933 | None:intergenic | 40.0% | |
| ACAGCGGAGATAATTTCTTC+TGG | - | chr4.4:50118283-50118302 | None:intergenic | 40.0% | |
| AGAAGAAATTATCTCCGCTG+TGG | + | chr4.4:50118282-50118301 | MS.gene88198:CDS | 40.0% | |
| AGAGATTCTTGGGGATGATT+AGG | + | chr4.4:50118836-50118855 | MS.gene88198:CDS | 40.0% | |
| AGAGGAGAGAGATGAAGTTT+AGG | + | chr4.4:50118860-50118879 | MS.gene88198:CDS | 40.0% | |
| AGAGGTTTGAGAGATTCTTG+GGG | + | chr4.4:50118827-50118846 | MS.gene88198:CDS | 40.0% | |
| GAAAGTAGAAATGACATGGC+TGG | - | chr4.4:50118170-50118189 | None:intergenic | 40.0% | |
| GAGAGGTTTGAGAGATTCTT+GGG | + | chr4.4:50118826-50118845 | MS.gene88198:CDS | 40.0% | |
| GAGATTCTTGGGGATGATTA+GGG | + | chr4.4:50118837-50118856 | MS.gene88198:CDS | 40.0% | |
| GAGGAAGAAAGTTAGTGAAG+AGG | + | chr4.4:50118792-50118811 | MS.gene88198:CDS | 40.0% | |
| GATGAAGTTTAGGAGACAGA+AGG | + | chr4.4:50118870-50118889 | MS.gene88198:CDS | 40.0% | |
| TAGTGAAGAGGGAGAGATTA+AGG | + | chr4.4:50118804-50118823 | MS.gene88198:CDS | 40.0% | |
| TCACATGTTGTGGGAAAGTT+GGG | + | chr4.4:50118659-50118678 | MS.gene88198:CDS | 40.0% | |
| TCTGCATGGAGAATGATCTA+TGG | + | chr4.4:50118098-50118117 | MS.gene88198:CDS | 40.0% | |
| TCTGTAGTGTATATCCACAG+CGG | - | chr4.4:50118299-50118318 | None:intergenic | 40.0% | |
| TGGGATATTGATGAAGGCAA+TGG | + | chr4.4:50118759-50118778 | MS.gene88198:CDS | 40.0% | |
| TGTGTGTATGGAGGATATCA+TGG | - | chr4.4:50118012-50118031 | None:intergenic | 40.0% | |
| TTGATGAAGGCAATGGAGTT+TGG | + | chr4.4:50118766-50118785 | MS.gene88198:CDS | 40.0% | |
| ! | CGAAGAATGGATGAAGCATT+TGG | + | chr4.4:50118450-50118469 | MS.gene88198:CDS | 40.0% |
| ! | GATGATGGTGATGATGATGA+AGG | - | chr4.4:50117968-50117987 | None:intergenic | 40.0% |
| ! | TTAGTGATGGAGGATATGGA+AGG | + | chr4.4:50118709-50118728 | MS.gene88198:CDS | 40.0% |
| !! | TGATGAAGGCATCTTGCTTT+CGG | - | chr4.4:50117954-50117973 | None:intergenic | 40.0% |
| !!! | GTTTGGTTTTGTTACTTGGC+TGG | + | chr4.4:50118934-50118953 | MS.gene88198:CDS | 40.0% |
| AAAAAATCTGCACCGAGACG+TGG | + | chr4.4:50118122-50118141 | MS.gene88198:CDS | 45.0% | |
| AAATGACATGGCTGGTGGTA+GGG | - | chr4.4:50118162-50118181 | None:intergenic | 45.0% | |
| AAGAGGGAGAGATTAAGGAG+AGG | + | chr4.4:50118809-50118828 | MS.gene88198:CDS | 45.0% | |
| ACATGTTGTGGGAAAGTTGG+GGG | + | chr4.4:50118661-50118680 | MS.gene88198:CDS | 45.0% | |
| AGGGGTTGGGATATTGATGA+AGG | + | chr4.4:50118753-50118772 | MS.gene88198:CDS | 45.0% | |
| AGTAGAAATGACATGGCTGG+TGG | - | chr4.4:50118167-50118186 | None:intergenic | 45.0% | |
| ATAATTTCTTCTGGCGGAGG+AGG | - | chr4.4:50118274-50118293 | None:intergenic | 45.0% | |
| ATGCGTCTGAGAAAACGGAA+CGG | - | chr4.4:50118204-50118223 | None:intergenic | 45.0% | |
| ATGGAGGATATCATGGTGCA+TGG | - | chr4.4:50118005-50118024 | None:intergenic | 45.0% | |
| ATGGTGAAGGTCACATGTTG+TGG | + | chr4.4:50118649-50118668 | MS.gene88198:CDS | 45.0% | |
| CACATGTTGTGGGAAAGTTG+GGG | + | chr4.4:50118660-50118679 | MS.gene88198:CDS | 45.0% | |
| CAGTGTCGTCGTACTAAAAC+CGG | - | chr4.4:50118550-50118569 | None:intergenic | 45.0% | |
| CTCACGTCGTCGTTACATAT+TGG | + | chr4.4:50118373-50118392 | MS.gene88198:CDS | 45.0% | |
| GAAAAGAATCTCCACGTCTC+TGG | - | chr4.4:50118578-50118597 | None:intergenic | 45.0% | |
| GAATTGTACATGAGGGAGGT+GGG | + | chr4.4:50118685-50118704 | MS.gene88198:CDS | 45.0% | |
| GAGATAATTTCTTCTGGCGG+AGG | - | chr4.4:50118277-50118296 | None:intergenic | 45.0% | |
| GATCATTCTCCATGCAGAGA+TGG | - | chr4.4:50118096-50118115 | None:intergenic | 45.0% | |
| GCGGAGATAATTTCTTCTGG+CGG | - | chr4.4:50118280-50118299 | None:intergenic | 45.0% | |
| GCTGTGGATATACACTACAG+AGG | + | chr4.4:50118298-50118317 | MS.gene88198:CDS | 45.0% | |
| GGAGAGGTTTGAGAGATTCT+TGG | + | chr4.4:50118825-50118844 | MS.gene88198:CDS | 45.0% | |
| GGGAAATGCGTCTGAGAAAA+CGG | - | chr4.4:50118209-50118228 | None:intergenic | 45.0% | |
| GTCACATGTTGTGGGAAAGT+TGG | + | chr4.4:50118658-50118677 | MS.gene88198:CDS | 45.0% | |
| TGAATTGTACATGAGGGAGG+TGG | + | chr4.4:50118684-50118703 | MS.gene88198:CDS | 45.0% | |
| TGATGGAGGATATGGAAGGA+GGG | + | chr4.4:50118713-50118732 | MS.gene88198:CDS | 45.0% | |
| TGGGGGTGAATTGTACATGA+GGG | + | chr4.4:50118678-50118697 | MS.gene88198:CDS | 45.0% | |
| TGGTGAAGGTCACATGTTGT+GGG | + | chr4.4:50118650-50118669 | MS.gene88198:CDS | 45.0% | |
| TTAGTGGGAAAGAAGGGGTT+GGG | + | chr4.4:50118740-50118759 | MS.gene88198:CDS | 45.0% | |
| TTGGGGGTGAATTGTACATG+AGG | + | chr4.4:50118677-50118696 | MS.gene88198:CDS | 45.0% | |
| ! | ACGTGATGGTGTTTCTACCT+TGG | + | chr4.4:50118894-50118913 | MS.gene88198:CDS | 45.0% |
| ! | AGACGTGGAGATTCTTTTCG+CGG | + | chr4.4:50118579-50118598 | MS.gene88198:CDS | 45.0% |
| ! | GATTCTTTTCGCGGTGACAA+TGG | + | chr4.4:50118588-50118607 | MS.gene88198:CDS | 45.0% |
| ! | GGGTTTAGTGATGGAGGATA+TGG | + | chr4.4:50118705-50118724 | MS.gene88198:CDS | 45.0% |
| ! | TTAGCCGAACGTTTTCCAGT+CGG | - | chr4.4:50118511-50118530 | None:intergenic | 45.0% |
| !! | GTGGTGATGCTTGATGATGA+TGG | - | chr4.4:50117983-50118002 | None:intergenic | 45.0% |
| AAAACGGAACGGTGGCCATT+TGG | - | chr4.4:50118193-50118212 | None:intergenic | 50.0% | |
| AAACGGAACGGTGGCCATTT+GGG | - | chr4.4:50118192-50118211 | None:intergenic | 50.0% | |
| AACCGAGATGGTGCAGTGTA+TGG | + | chr4.4:50118630-50118649 | MS.gene88198:CDS | 50.0% | |
| AGGCAATGGAGTTTGGAGAG+AGG | + | chr4.4:50118773-50118792 | MS.gene88198:CDS | 50.0% | |
| CACCATACACTGCACCATCT+CGG | - | chr4.4:50118635-50118654 | None:intergenic | 50.0% | |
| CATTCTCCATGCAGAGATGG+CGG | - | chr4.4:50118093-50118112 | None:intergenic | 50.0% | |
| CGTTTCAGTTCGTTGGACTC+TGG | - | chr4.4:50118338-50118357 | None:intergenic | 50.0% | |
| CTAACAAACTTCACCGGCGT+TGG | - | chr4.4:50118424-50118443 | None:intergenic | 50.0% | |
| GAAATGACATGGCTGGTGGT+AGG | - | chr4.4:50118163-50118182 | None:intergenic | 50.0% | |
| GAGGATATCATGGTGCATGG+TGG | - | chr4.4:50118002-50118021 | None:intergenic | 50.0% | |
| GATGGAGGATATGGAAGGAG+GGG | + | chr4.4:50118714-50118733 | MS.gene88198:CDS | 50.0% | |
| GATGGTGCAGTGTATGGTGA+AGG | + | chr4.4:50118636-50118655 | MS.gene88198:CDS | 50.0% | |
| GGAGGTTAGTGGGAAAGAAG+GGG | + | chr4.4:50118735-50118754 | MS.gene88198:CDS | 50.0% | |
| GGGAGGTTAGTGGGAAAGAA+GGG | + | chr4.4:50118734-50118753 | MS.gene88198:CDS | 50.0% | |
| GGGTGAATTGTACATGAGGG+AGG | + | chr4.4:50118681-50118700 | MS.gene88198:CDS | 50.0% | |
| GTGGTAGGGTCTAGTAACGA+CGG | - | chr4.4:50118148-50118167 | None:intergenic | 50.0% | |
| GTTAGTGGGAAAGAAGGGGT+TGG | + | chr4.4:50118739-50118758 | MS.gene88198:CDS | 50.0% | |
| TCTTGGGGATGATTAGGGAG+AGG | + | chr4.4:50118842-50118861 | MS.gene88198:CDS | 50.0% | |
| ! | AGGAGACAGAAGGTACGTGA+TGG | + | chr4.4:50118880-50118899 | MS.gene88198:CDS | 50.0% |
| ! | GTCGTACTAAAACCGGCTTC+CGG | - | chr4.4:50118543-50118562 | None:intergenic | 50.0% |
| ! | GTGATGGAGGATATGGAAGG+AGG | + | chr4.4:50118712-50118731 | MS.gene88198:CDS | 50.0% |
| ! | TAGCCGAACGTTTTCCAGTC+GGG | - | chr4.4:50118510-50118529 | None:intergenic | 50.0% |
| ! | TCTTTTCGCGGTGACAATGG+CGG | + | chr4.4:50118591-50118610 | MS.gene88198:CDS | 50.0% |
| !! | AAACGAGTTGGTTCCAACGC+CGG | + | chr4.4:50118408-50118427 | MS.gene88198:CDS | 50.0% |
| !! | CGGTTTTAGTACGACGACAC+TGG | + | chr4.4:50118548-50118567 | MS.gene88198:CDS | 50.0% |
| ATGGAAGGAGGGGAGGTTAG+TGG | + | chr4.4:50118724-50118743 | MS.gene88198:CDS | 55.0% | |
| CGACCCGACTGGAAAACGTT+CGG | + | chr4.4:50118504-50118523 | MS.gene88198:CDS | 55.0% | |
| CGTCTGAGAAAACGGAACGG+TGG | - | chr4.4:50118201-50118220 | None:intergenic | 55.0% | |
| GACACGACGATCAACCGAGA+TGG | + | chr4.4:50118618-50118637 | MS.gene88198:CDS | 55.0% | |
| GGAGGGTGAGGATGTGTGTA+TGG | - | chr4.4:50118024-50118043 | None:intergenic | 55.0% | |
| GGGGAGGTTAGTGGGAAAGA+AGG | + | chr4.4:50118733-50118752 | MS.gene88198:CDS | 55.0% | |
| GGGTGAGGATGTGTGTATGG+AGG | - | chr4.4:50118021-50118040 | None:intergenic | 55.0% | |
| GTTCGGCTAACGTTTCCAGC+CGG | + | chr4.4:50118521-50118540 | MS.gene88198:CDS | 55.0% | |
| TAACGTTTCCAGCCGGAAGC+CGG | + | chr4.4:50118528-50118547 | MS.gene88198:CDS | 55.0% | |
| TAGTAACGACGGCCACGTCT+CGG | - | chr4.4:50118137-50118156 | None:intergenic | 55.0% | |
| TGGAAGGAGGGGAGGTTAGT+GGG | + | chr4.4:50118725-50118744 | MS.gene88198:CDS | 55.0% | |
| TGGATCATCATCGACCCGAC+TGG | + | chr4.4:50118493-50118512 | MS.gene88198:CDS | 55.0% | |
| ! | ACACTGGCTAACCAGAGACG+TGG | + | chr4.4:50118564-50118583 | MS.gene88198:CDS | 55.0% |
| ! | CTTTTCGCGGTGACAATGGC+GGG | + | chr4.4:50118592-50118611 | MS.gene88198:CDS | 55.0% |
| ! | GAGGGAGGTGGGTTTAGTGA+TGG | + | chr4.4:50118696-50118715 | MS.gene88198:CDS | 55.0% |
| ! | GGAGGTGGGTTTAGTGATGG+AGG | + | chr4.4:50118699-50118718 | MS.gene88198:CDS | 55.0% |
| ! | GGCGTTGGAACCAACTCGTT+TGG | - | chr4.4:50118409-50118428 | None:intergenic | 55.0% |
| ! | TACTAAAACCGGCTTCCGGC+TGG | - | chr4.4:50118539-50118558 | None:intergenic | 55.0% |
| GGAGGATATGGAAGGAGGGG+AGG | + | chr4.4:50118717-50118736 | MS.gene88198:CDS | 60.0% | |
| TCACCTCCGCCATCTCTGCA+TGG | + | chr4.4:50118084-50118103 | MS.gene88198:CDS | 60.0% | |
| TCTTCTGGCGGAGGAGGTGA+CGG | - | chr4.4:50118268-50118287 | None:intergenic | 60.0% | |
| ! | TCTCCATGCAGAGATGGCGG+AGG | - | chr4.4:50118090-50118109 | None:intergenic | 60.0% |
| GAGGTGAGAGCAGGTGGAGG+CGG | - | chr4.4:50118071-50118090 | None:intergenic | 65.0% | |
| ! | ATGGCGGAGGTGAGAGCAGG+TGG | - | chr4.4:50118077-50118096 | None:intergenic | 65.0% |
| !! | GAGATGGCGGAGGTGAGAGC+AGG | - | chr4.4:50118080-50118099 | None:intergenic | 65.0% |
| AGAGCAGGTGGAGGCGGTGG+TGG | - | chr4.4:50118065-50118084 | None:intergenic | 70.0% | |
| GCGGAGGTGAGAGCAGGTGG+AGG | - | chr4.4:50118074-50118093 | None:intergenic | 70.0% | |
| GTGAGAGCAGGTGGAGGCGG+TGG | - | chr4.4:50118068-50118087 | None:intergenic | 70.0% | |
| ! | TCTGGCGGAGGAGGTGACGG+AGG | - | chr4.4:50118265-50118284 | None:intergenic | 70.0% |
| ! | GAGCGTGGCGGCGTCGAGGA+GGG | - | chr4.4:50118041-50118060 | None:intergenic | 75.0% |
| ! | TGGCGGCGTCGAGGAGGGTG+AGG | - | chr4.4:50118036-50118055 | None:intergenic | 75.0% |
| ! | TGGCGAGCGTGGCGGCGTCG+AGG | - | chr4.4:50118045-50118064 | None:intergenic | 80.0% |
| !! | CGAGCGTGGCGGCGTCGAGG+AGG | - | chr4.4:50118042-50118061 | None:intergenic | 80.0% |
| !! | GGAGGCGGTGGTGGCGAGCG+TGG | - | chr4.4:50118056-50118075 | None:intergenic | 80.0% |
| !! | GGCGGTGGTGGCGAGCGTGG+CGG | - | chr4.4:50118053-50118072 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 50117935 | 50118963 | 50117935 | ID=MS.gene88198 |
| chr4.4 | mRNA | 50117935 | 50118963 | 50117935 | ID=MS.gene88198.t1;Parent=MS.gene88198 |
| chr4.4 | exon | 50117935 | 50118963 | 50117935 | ID=MS.gene88198.t1.exon1;Parent=MS.gene88198.t1 |
| chr4.4 | CDS | 50117935 | 50118963 | 50117935 | ID=cds.MS.gene88198.t1;Parent=MS.gene88198.t1 |
| Gene Sequence |
| Protein sequence |
