Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89246.t1 | XP_003623208.1 | 96.4 | 225 | 8 | 0 | 1 | 225 | 1 | 225 | 9.40E-120 | 439.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89246.t1 | P32110 | 77.9 | 226 | 48 | 2 | 1 | 225 | 1 | 225 | 2.5e-97 | 356.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89246.t1 | G7L6I2 | 96.4 | 225 | 8 | 0 | 1 | 225 | 1 | 225 | 6.8e-120 | 439.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene89246 | 0.813496 | 2.49E-51 | -1.69E-46 |
| MS.gene050381 | MS.gene89246 | 0.820023 | 8.54E-53 | -1.69E-46 |
| MS.gene050883 | MS.gene89246 | 0.830725 | 2.50E-55 | -1.69E-46 |
| MS.gene051127 | MS.gene89246 | 0.811922 | 5.49E-51 | -1.69E-46 |
| MS.gene051946 | MS.gene89246 | 0.821044 | 4.98E-53 | -1.69E-46 |
| MS.gene053561 | MS.gene89246 | 0.808634 | 2.81E-50 | -1.69E-46 |
| MS.gene055139 | MS.gene89246 | 0.836967 | 6.86E-57 | -1.69E-46 |
| MS.gene055154 | MS.gene89246 | 0.820853 | 5.51E-53 | -1.69E-46 |
| MS.gene055202 | MS.gene89246 | 0.805303 | 1.42E-49 | -1.69E-46 |
| MS.gene055942 | MS.gene89246 | 0.803277 | 3.76E-49 | -1.69E-46 |
| MS.gene056310 | MS.gene89246 | 0.800361 | 1.49E-48 | -1.69E-46 |
| MS.gene056311 | MS.gene89246 | 0.809921 | 1.49E-50 | -1.69E-46 |
| MS.gene056408 | MS.gene89246 | 0.813264 | 2.79E-51 | -1.69E-46 |
| MS.gene057014 | MS.gene89246 | 0.834349 | 3.16E-56 | -1.69E-46 |
| MS.gene058171 | MS.gene89246 | 0.804618 | 1.98E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene89246 | 0.80388 | 2.82E-49 | -1.69E-46 |
| MS.gene058493 | MS.gene89246 | 0.81269 | 3.73E-51 | -1.69E-46 |
| MS.gene058628 | MS.gene89246 | 0.838827 | 2.28E-57 | -1.69E-46 |
| MS.gene058629 | MS.gene89246 | 0.823511 | 1.33E-53 | -1.69E-46 |
| MS.gene058630 | MS.gene89246 | 0.831948 | 1.25E-55 | -1.69E-46 |
| MS.gene059045 | MS.gene89246 | 0.816704 | 4.82E-52 | -1.69E-46 |
| MS.gene059690 | MS.gene89246 | 0.82323 | 1.55E-53 | -1.69E-46 |
| MS.gene059694 | MS.gene89246 | 0.816752 | 4.70E-52 | -1.69E-46 |
| MS.gene059697 | MS.gene89246 | 0.805756 | 1.14E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene89246 | -0.803939 | 2.74E-49 | -1.69E-46 |
| MS.gene059916 | MS.gene89246 | 0.803895 | 2.80E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89246.t1 | MTR_7g065720 | 96.444 | 225 | 8 | 0 | 1 | 225 | 1 | 225 | 3.01e-160 | 442 |
| MS.gene89246.t1 | MTR_7g065660 | 76.786 | 224 | 51 | 1 | 1 | 224 | 1 | 223 | 2.70e-127 | 358 |
| MS.gene89246.t1 | MTR_7g065740 | 75.000 | 224 | 56 | 0 | 1 | 224 | 1 | 224 | 1.04e-125 | 355 |
| MS.gene89246.t1 | MTR_7g065750 | 75.221 | 226 | 55 | 1 | 1 | 225 | 1 | 226 | 8.07e-124 | 350 |
| MS.gene89246.t1 | MTR_7g065600 | 69.778 | 225 | 67 | 1 | 1 | 225 | 1 | 224 | 6.92e-114 | 325 |
| MS.gene89246.t1 | MTR_7g065640 | 72.321 | 224 | 43 | 2 | 1 | 224 | 1 | 205 | 1.85e-113 | 323 |
| MS.gene89246.t1 | MTR_7g065590 | 67.556 | 225 | 72 | 1 | 1 | 225 | 1 | 224 | 6.66e-112 | 320 |
| MS.gene89246.t1 | MTR_7g065290 | 70.222 | 225 | 66 | 1 | 1 | 225 | 1 | 224 | 9.88e-112 | 319 |
| MS.gene89246.t1 | MTR_7g065265 | 67.556 | 225 | 72 | 1 | 1 | 225 | 1 | 224 | 9.39e-106 | 304 |
| MS.gene89246.t1 | MTR_4g019790 | 65.625 | 224 | 76 | 1 | 1 | 224 | 1 | 223 | 4.21e-105 | 303 |
| MS.gene89246.t1 | MTR_7g065270 | 66.667 | 225 | 74 | 1 | 1 | 225 | 1 | 224 | 3.09e-104 | 300 |
| MS.gene89246.t1 | MTR_7g065630 | 68.304 | 224 | 66 | 2 | 1 | 224 | 19 | 237 | 1.12e-103 | 300 |
| MS.gene89246.t1 | MTR_7g065230 | 65.778 | 225 | 71 | 2 | 1 | 225 | 1 | 219 | 8.62e-100 | 289 |
| MS.gene89246.t1 | MTR_7g065260 | 62.832 | 226 | 82 | 2 | 1 | 225 | 8 | 232 | 1.85e-97 | 283 |
| MS.gene89246.t1 | MTR_4g019780 | 63.303 | 218 | 76 | 3 | 1 | 216 | 1 | 216 | 1.85e-96 | 280 |
| MS.gene89246.t1 | MTR_7g065710 | 65.865 | 208 | 66 | 2 | 8 | 215 | 5 | 207 | 5.99e-96 | 279 |
| MS.gene89246.t1 | MTR_7g065680 | 64.574 | 223 | 74 | 2 | 1 | 223 | 1 | 218 | 1.09e-89 | 263 |
| MS.gene89246.t1 | MTR_7g065700 | 66.512 | 215 | 67 | 2 | 1 | 215 | 1 | 210 | 8.91e-89 | 261 |
| MS.gene89246.t1 | MTR_8g087425 | 44.292 | 219 | 119 | 2 | 4 | 221 | 2 | 218 | 3.83e-66 | 204 |
| MS.gene89246.t1 | MTR_3g099757 | 45.701 | 221 | 117 | 2 | 5 | 224 | 3 | 221 | 2.94e-65 | 201 |
| MS.gene89246.t1 | MTR_6g080440 | 46.890 | 209 | 108 | 2 | 7 | 214 | 3 | 209 | 4.65e-65 | 201 |
| MS.gene89246.t1 | MTR_8g087410 | 47.664 | 214 | 108 | 3 | 1 | 213 | 1 | 211 | 7.69e-64 | 198 |
| MS.gene89246.t1 | MTR_1g090150 | 43.111 | 225 | 114 | 4 | 6 | 223 | 2 | 219 | 8.12e-61 | 190 |
| MS.gene89246.t1 | MTR_1g115195 | 45.972 | 211 | 112 | 1 | 7 | 215 | 3 | 213 | 1.52e-60 | 189 |
| MS.gene89246.t1 | MTR_1g090070 | 45.495 | 222 | 115 | 3 | 7 | 224 | 9 | 228 | 6.23e-60 | 188 |
| MS.gene89246.t1 | MTR_1g090060 | 44.144 | 222 | 119 | 3 | 7 | 225 | 3 | 222 | 1.04e-55 | 177 |
| MS.gene89246.t1 | MTR_4g059730 | 44.393 | 214 | 114 | 2 | 6 | 216 | 3 | 214 | 1.12e-55 | 177 |
| MS.gene89246.t1 | MTR_1g090100 | 44.091 | 220 | 118 | 3 | 8 | 224 | 3 | 220 | 5.58e-54 | 172 |
| MS.gene89246.t1 | MTR_1g090090 | 44.762 | 210 | 111 | 2 | 7 | 213 | 3 | 210 | 9.82e-54 | 172 |
| MS.gene89246.t1 | MTR_5g037380 | 44.344 | 221 | 112 | 4 | 1 | 213 | 1 | 218 | 1.38e-53 | 172 |
| MS.gene89246.t1 | MTR_5g040430 | 40.807 | 223 | 123 | 3 | 1 | 216 | 1 | 221 | 1.84e-53 | 171 |
| MS.gene89246.t1 | MTR_8g061950 | 43.182 | 220 | 116 | 4 | 5 | 216 | 3 | 221 | 2.51e-50 | 164 |
| MS.gene89246.t1 | MTR_2g070150 | 42.718 | 206 | 110 | 5 | 6 | 208 | 3 | 203 | 4.59e-47 | 154 |
| MS.gene89246.t1 | MTR_2g070200 | 42.439 | 205 | 113 | 4 | 6 | 208 | 3 | 204 | 9.66e-47 | 154 |
| MS.gene89246.t1 | MTR_2g070180 | 40.488 | 205 | 116 | 4 | 6 | 208 | 3 | 203 | 2.93e-45 | 150 |
| MS.gene89246.t1 | MTR_3g467420 | 41.827 | 208 | 115 | 5 | 8 | 213 | 10 | 213 | 3.57e-45 | 150 |
| MS.gene89246.t1 | MTR_2g070120 | 42.029 | 207 | 114 | 5 | 6 | 210 | 3 | 205 | 4.19e-45 | 150 |
| MS.gene89246.t1 | MTR_2g070130 | 40.976 | 205 | 115 | 4 | 6 | 208 | 3 | 203 | 4.62e-45 | 150 |
| MS.gene89246.t1 | MTR_2g070140 | 41.837 | 196 | 106 | 6 | 21 | 213 | 2 | 192 | 7.00e-45 | 149 |
| MS.gene89246.t1 | MTR_3g467430 | 40.094 | 212 | 121 | 5 | 4 | 213 | 6 | 213 | 4.52e-44 | 147 |
| MS.gene89246.t1 | MTR_2g070210 | 40.566 | 212 | 118 | 6 | 6 | 213 | 3 | 210 | 2.47e-43 | 145 |
| MS.gene89246.t1 | MTR_8g056940 | 43.915 | 189 | 100 | 4 | 6 | 192 | 3 | 187 | 3.08e-42 | 142 |
| MS.gene89246.t1 | MTR_4g124130 | 39.091 | 220 | 127 | 5 | 5 | 221 | 2 | 217 | 2.00e-41 | 140 |
| MS.gene89246.t1 | MTR_5g076900 | 37.559 | 213 | 127 | 5 | 3 | 213 | 2 | 210 | 1.63e-39 | 135 |
| MS.gene89246.t1 | MTR_2g070060 | 36.321 | 212 | 123 | 5 | 7 | 213 | 4 | 208 | 2.30e-39 | 135 |
| MS.gene89246.t1 | MTR_2g070070 | 36.406 | 217 | 132 | 4 | 7 | 221 | 4 | 216 | 7.36e-39 | 134 |
| MS.gene89246.t1 | MTR_2g070110 | 38.278 | 209 | 122 | 4 | 7 | 213 | 4 | 207 | 5.07e-37 | 129 |
| MS.gene89246.t1 | MTR_0186s0030 | 48.227 | 141 | 70 | 2 | 6 | 145 | 3 | 141 | 1.35e-34 | 120 |
| MS.gene89246.t1 | MTR_2g072120 | 49.153 | 59 | 29 | 1 | 51 | 108 | 2 | 60 | 4.21e-14 | 65.5 |
| MS.gene89246.t1 | MTR_5g037390 | 45.205 | 73 | 37 | 1 | 31 | 100 | 11 | 83 | 1.10e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89246.t1 | AT3G09270 | 50.667 | 225 | 105 | 5 | 4 | 224 | 2 | 224 | 9.69e-76 | 228 |
| MS.gene89246.t1 | AT2G29420 | 49.545 | 220 | 108 | 2 | 3 | 221 | 5 | 222 | 1.07e-74 | 226 |
| MS.gene89246.t1 | AT2G29490 | 48.095 | 210 | 105 | 3 | 1 | 208 | 1 | 208 | 4.41e-60 | 188 |
| MS.gene89246.t1 | AT2G29480 | 45.714 | 210 | 110 | 3 | 1 | 208 | 1 | 208 | 7.29e-56 | 177 |
| MS.gene89246.t1 | AT2G29450 | 47.115 | 208 | 107 | 3 | 3 | 208 | 2 | 208 | 9.47e-55 | 175 |
| MS.gene89246.t1 | AT2G29460 | 43.498 | 223 | 122 | 3 | 1 | 221 | 1 | 221 | 1.10e-54 | 174 |
| MS.gene89246.t1 | AT1G10370 | 45.192 | 208 | 106 | 3 | 5 | 205 | 3 | 209 | 1.12e-54 | 175 |
| MS.gene89246.t1 | AT2G29440 | 46.190 | 210 | 108 | 4 | 1 | 208 | 1 | 207 | 2.84e-53 | 171 |
| MS.gene89246.t1 | AT2G29470 | 43.602 | 211 | 114 | 4 | 1 | 208 | 1 | 209 | 5.65e-53 | 170 |
| MS.gene89246.t1 | AT1G27130 | 41.593 | 226 | 122 | 5 | 1 | 218 | 1 | 224 | 8.35e-52 | 167 |
| MS.gene89246.t1 | AT1G59700 | 46.411 | 209 | 103 | 5 | 5 | 205 | 4 | 211 | 2.34e-51 | 166 |
| MS.gene89246.t1 | AT1G10360 | 42.453 | 212 | 112 | 4 | 1 | 205 | 1 | 209 | 2.78e-51 | 166 |
| MS.gene89246.t1 | AT1G59670 | 44.019 | 209 | 108 | 4 | 5 | 205 | 4 | 211 | 1.43e-50 | 164 |
| MS.gene89246.t1 | AT1G78340 | 42.857 | 210 | 114 | 4 | 6 | 213 | 3 | 208 | 5.73e-49 | 160 |
| MS.gene89246.t1 | AT1G69930 | 39.111 | 225 | 130 | 3 | 2 | 220 | 7 | 230 | 4.42e-48 | 158 |
| MS.gene89246.t1 | AT1G53680 | 38.967 | 213 | 126 | 3 | 1 | 211 | 1 | 211 | 4.21e-47 | 155 |
| MS.gene89246.t1 | AT1G78370 | 40.291 | 206 | 117 | 4 | 10 | 213 | 7 | 208 | 4.61e-47 | 155 |
| MS.gene89246.t1 | AT1G69920 | 40.465 | 215 | 117 | 5 | 1 | 205 | 26 | 239 | 6.71e-47 | 155 |
| MS.gene89246.t1 | AT1G78380 | 43.284 | 201 | 108 | 4 | 7 | 205 | 4 | 200 | 6.83e-47 | 154 |
| MS.gene89246.t1 | AT1G78320 | 40.930 | 215 | 121 | 5 | 5 | 217 | 2 | 212 | 1.64e-46 | 154 |
| MS.gene89246.t1 | AT1G17170 | 39.908 | 218 | 124 | 4 | 6 | 221 | 3 | 215 | 1.31e-45 | 151 |
| MS.gene89246.t1 | AT1G27140 | 38.961 | 231 | 130 | 5 | 1 | 222 | 1 | 229 | 4.04e-45 | 150 |
| MS.gene89246.t1 | AT5G62480 | 38.288 | 222 | 125 | 4 | 5 | 216 | 6 | 225 | 3.62e-44 | 148 |
| MS.gene89246.t1 | AT1G17180 | 40.000 | 210 | 120 | 5 | 6 | 213 | 3 | 208 | 3.94e-43 | 145 |
| MS.gene89246.t1 | AT1G78360 | 40.476 | 210 | 118 | 5 | 7 | 213 | 4 | 209 | 5.16e-42 | 142 |
| MS.gene89246.t1 | AT3G43800 | 38.462 | 208 | 118 | 6 | 4 | 205 | 2 | 205 | 4.86e-39 | 134 |
| MS.gene89246.t1 | AT1G74590 | 33.778 | 225 | 141 | 4 | 1 | 219 | 1 | 223 | 2.34e-38 | 133 |
| MS.gene89246.t1 | AT1G17190 | 38.140 | 215 | 125 | 5 | 1 | 213 | 1 | 209 | 4.97e-37 | 129 |
| MS.gene89246.t1 | AT1G78320 | 34.579 | 214 | 109 | 5 | 5 | 217 | 2 | 185 | 2.26e-32 | 116 |
| MS.gene89246.t1 | AT5G62480 | 30.769 | 221 | 117 | 4 | 5 | 216 | 6 | 199 | 1.55e-28 | 107 |
| MS.gene89246.t1 | AT5G62480 | 30.317 | 221 | 117 | 4 | 5 | 216 | 6 | 198 | 1.21e-27 | 105 |
Find 40 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTCCACTTGGAAAGTT+TGG | 0.246363 | 7.1:-36920657 | None:intergenic |
| AAAGAGCCTTGGCTAGATTT+TGG | 0.274128 | 7.1:+36920100 | MS.gene89246:CDS |
| AATCACAAGTGATTCTGATA+TGG | 0.275550 | 7.1:-36920019 | None:intergenic |
| GAGCTGAAGGACAAGTTCTT+TGG | 0.294063 | 7.1:+36920527 | MS.gene89246:CDS |
| AAAATCTAGCCAAGGCTCTT+TGG | 0.322049 | 7.1:-36920098 | None:intergenic |
| TGGCTCCACTTGGAAAGTTT+GGG | 0.342035 | 7.1:-36920656 | None:intergenic |
| TTGGATGGTTGAGAAATTCT+TGG | 0.345416 | 7.1:-36920676 | None:intergenic |
| TCTCAACCATCCAATTGTTA+AGG | 0.377126 | 7.1:+36920685 | MS.gene89246:CDS |
| CCTTTGATTCAAGACATAAC+AGG | 0.388085 | 7.1:+36920605 | MS.gene89246:CDS |
| TTCTTTGGAGGAGAGGAGAT+TGG | 0.390435 | 7.1:+36920542 | MS.gene89246:CDS |
| GTGAAGCTATTGGGAGCTAT+AGG | 0.394371 | 7.1:+36919844 | MS.gene89246:CDS |
| TGCTTCAATGGCTACAAATC+AGG | 0.399394 | 7.1:+36919816 | None:intergenic |
| CAGGAAGAAGTGAAGCTATT+GGG | 0.411817 | 7.1:+36919835 | MS.gene89246:CDS |
| TCAGGAAGAAGTGAAGCTAT+TGG | 0.415262 | 7.1:+36919834 | MS.gene89246:CDS |
| ATCTGTACTCTACACACAAA+TGG | 0.424561 | 7.1:-36919871 | None:intergenic |
| ACAGATTGCTCTAAAGTTGA+AGG | 0.449931 | 7.1:+36919888 | MS.gene89246:CDS |
| ATCACAAGTGATTCTGATAT+GGG | 0.450253 | 7.1:-36920018 | None:intergenic |
| AGGAGAGGAGATTGGAATTG+TGG | 0.454908 | 7.1:+36920550 | MS.gene89246:CDS |
| GAGAAATTCTTGGCTCCACT+TGG | 0.459712 | 7.1:-36920666 | None:intergenic |
| GCTCTTTGGTATGGATCATA+AGG | 0.477384 | 7.1:-36920084 | None:intergenic |
| CTAGCCAAGGCTCTTTGGTA+TGG | 0.477671 | 7.1:-36920093 | None:intergenic |
| CTGAAGGACAAGTTCTTTGG+AGG | 0.491967 | 7.1:+36920530 | MS.gene89246:CDS |
| CCTGTTATGTCTTGAATCAA+AGG | 0.497589 | 7.1:-36920605 | None:intergenic |
| TCTGTACTCTACACACAAAT+GGG | 0.504085 | 7.1:-36919870 | None:intergenic |
| GAGCGCGAGAAGAATATTGA+AGG | 0.504203 | 7.1:+36920473 | MS.gene89246:CDS |
| TTGAGTATATTGATGAGACT+TGG | 0.504629 | 7.1:+36920043 | MS.gene89246:CDS |
| TATAAACTGGGTTATACTTG+AGG | 0.528468 | 7.1:-36919963 | None:intergenic |
| CAAATTTCTTGAAGAAAACA+TGG | 0.532285 | 7.1:+36919921 | MS.gene89246:CDS |
| GGACAAGTTCTTTGGAGGAG+AGG | 0.532885 | 7.1:+36920535 | MS.gene89246:CDS |
| CTTTCTCATCATCAACGGTA+TGG | 0.537106 | 7.1:-36920451 | None:intergenic |
| CTTTGATTCAAGACATAACA+GGG | 0.541148 | 7.1:+36920606 | MS.gene89246:CDS |
| CTGTTATGTCTTGAATCAAA+GGG | 0.548966 | 7.1:-36920604 | None:intergenic |
| GAATATTGAAGGAACAATTG+AGG | 0.577684 | 7.1:+36920484 | MS.gene89246:CDS |
| TGATCCATACCAAAGAGCCT+TGG | 0.577800 | 7.1:+36920089 | MS.gene89246:CDS |
| GATTCTTGAGAATGAGCTGA+AGG | 0.588727 | 7.1:+36920514 | MS.gene89246:CDS |
| CAGATTGCTCTAAAGTTGAA+GGG | 0.593796 | 7.1:+36919889 | MS.gene89246:CDS |
| GTCTAACTTCATCGACGACA+AGG | 0.594451 | 7.1:+36920122 | MS.gene89246:CDS |
| GTTAGACCAAAATCTAGCCA+AGG | 0.639426 | 7.1:-36920106 | None:intergenic |
| GCGCTCTTTCTCATCATCAA+CGG | 0.643070 | 7.1:-36920456 | None:intergenic |
| AGTGTCCCAAACTTTCCAAG+TGG | 0.647650 | 7.1:+36920651 | MS.gene89246:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATACATCATATGTGATTGT+TGG | - | chr7.1:36920255-36920274 | None:intergenic | 25.0% |
| ! | AATTTACATCTTTGATGTCA+CGG | + | chr7.1:36920341-36920360 | MS.gene89246:intron | 25.0% |
| ! | CAAATTTCTTGAAGAAAACA+TGG | + | chr7.1:36919921-36919940 | MS.gene89246:CDS | 25.0% |
| !! | ACTGGAATCTTTTTATAAAC+TGG | - | chr7.1:36919979-36919998 | None:intergenic | 25.0% |
| !! | ATTTACATTAGAAAAGTACG+CGG | - | chr7.1:36920379-36920398 | None:intergenic | 25.0% |
| !! | CTGGAATCTTTTTATAAACT+GGG | - | chr7.1:36919978-36919997 | None:intergenic | 25.0% |
| !! | TATTTTCCTTAACAATTGGA+TGG | - | chr7.1:36920694-36920713 | None:intergenic | 25.0% |
| !! | TTTTCATTGTGAACAAAAAC+TGG | - | chr7.1:36919997-36920016 | None:intergenic | 25.0% |
| AATCACAAGTGATTCTGATA+TGG | - | chr7.1:36920022-36920041 | None:intergenic | 30.0% | |
| ATCACAAGTGATTCTGATAT+GGG | - | chr7.1:36920021-36920040 | None:intergenic | 30.0% | |
| ATTACATCATACGTGATTGA+TGG | + | chr7.1:36920202-36920221 | MS.gene89246:intron | 30.0% | |
| CTGTTATGTCTTGAATCAAA+GGG | - | chr7.1:36920607-36920626 | None:intergenic | 30.0% | |
| CTTTGATTCAAGACATAACA+GGG | + | chr7.1:36920606-36920625 | MS.gene89246:CDS | 30.0% | |
| GAATATTGAAGGAACAATTG+AGG | + | chr7.1:36920484-36920503 | MS.gene89246:CDS | 30.0% | |
| TATAAACTGGGTTATACTTG+AGG | - | chr7.1:36919966-36919985 | None:intergenic | 30.0% | |
| TTGAGTATATTGATGAGACT+TGG | + | chr7.1:36920043-36920062 | MS.gene89246:CDS | 30.0% | |
| ! | GGCATATTTTCCTTAACAAT+TGG | - | chr7.1:36920698-36920717 | None:intergenic | 30.0% |
| !! | GCTTTGAAATAAGCAAAAAG+AGG | - | chr7.1:36920731-36920750 | None:intergenic | 30.0% |
| ATCTGTACTCTACACACAAA+TGG | - | chr7.1:36919874-36919893 | None:intergenic | 35.0% | |
| CCTGTTATGTCTTGAATCAA+AGG | - | chr7.1:36920608-36920627 | None:intergenic | 35.0% | |
| CCTTTGATTCAAGACATAAC+AGG | + | chr7.1:36920605-36920624 | MS.gene89246:CDS | 35.0% | |
| TAAGCAAAAAGAGGTTCTCT+AGG | - | chr7.1:36920722-36920741 | None:intergenic | 35.0% | |
| TCTCAACCATCCAATTGTTA+AGG | + | chr7.1:36920685-36920704 | MS.gene89246:CDS | 35.0% | |
| TCTGTACTCTACACACAAAT+GGG | - | chr7.1:36919873-36919892 | None:intergenic | 35.0% | |
| TTGGATGGTTGAGAAATTCT+TGG | - | chr7.1:36920679-36920698 | None:intergenic | 35.0% | |
| !! | ACAGATTGCTCTAAAGTTGA+AGG | + | chr7.1:36919888-36919907 | MS.gene89246:CDS | 35.0% |
| !! | CAGATTGCTCTAAAGTTGAA+GGG | + | chr7.1:36919889-36919908 | MS.gene89246:CDS | 35.0% |
| AAAATCTAGCCAAGGCTCTT+TGG | - | chr7.1:36920101-36920120 | None:intergenic | 40.0% | |
| CAGGAAGAAGTGAAGCTATT+GGG | + | chr7.1:36919835-36919854 | MS.gene89246:CDS | 40.0% | |
| CTTTCTCATCATCAACGGTA+TGG | - | chr7.1:36920454-36920473 | None:intergenic | 40.0% | |
| GATTCTTGAGAATGAGCTGA+AGG | + | chr7.1:36920514-36920533 | MS.gene89246:CDS | 40.0% | |
| GCTCTTTGGTATGGATCATA+AGG | - | chr7.1:36920087-36920106 | None:intergenic | 40.0% | |
| GTTAGACCAAAATCTAGCCA+AGG | - | chr7.1:36920109-36920128 | None:intergenic | 40.0% | |
| TCAGGAAGAAGTGAAGCTAT+TGG | + | chr7.1:36919834-36919853 | MS.gene89246:CDS | 40.0% | |
| ! | AAAGAGCCTTGGCTAGATTT+TGG | + | chr7.1:36920100-36920119 | MS.gene89246:CDS | 40.0% |
| ! | CAGCTGTCTACATAGCTTTT+TGG | + | chr7.1:36920579-36920598 | MS.gene89246:CDS | 40.0% |
| !! | GAGGAGAAGTTCACTTTTGT+TGG | - | chr7.1:36919947-36919966 | None:intergenic | 40.0% |
| AGGAGAGGAGATTGGAATTG+TGG | + | chr7.1:36920550-36920569 | MS.gene89246:CDS | 45.0% | |
| AGTGTCCCAAACTTTCCAAG+TGG | + | chr7.1:36920651-36920670 | MS.gene89246:CDS | 45.0% | |
| CTGAAGGACAAGTTCTTTGG+AGG | + | chr7.1:36920530-36920549 | MS.gene89246:CDS | 45.0% | |
| GAGAAATTCTTGGCTCCACT+TGG | - | chr7.1:36920669-36920688 | None:intergenic | 45.0% | |
| GAGCGCGAGAAGAATATTGA+AGG | + | chr7.1:36920473-36920492 | MS.gene89246:CDS | 45.0% | |
| GAGCTGAAGGACAAGTTCTT+TGG | + | chr7.1:36920527-36920546 | MS.gene89246:CDS | 45.0% | |
| GCAAAAAGAGGTTCTCTAGG+AGG | - | chr7.1:36920719-36920738 | None:intergenic | 45.0% | |
| GCGCTCTTTCTCATCATCAA+CGG | - | chr7.1:36920459-36920478 | None:intergenic | 45.0% | |
| GTCTAACTTCATCGACGACA+AGG | + | chr7.1:36920122-36920141 | MS.gene89246:CDS | 45.0% | |
| GTGAAGCTATTGGGAGCTAT+AGG | + | chr7.1:36919844-36919863 | MS.gene89246:CDS | 45.0% | |
| TGATCCATACCAAAGAGCCT+TGG | + | chr7.1:36920089-36920108 | MS.gene89246:CDS | 45.0% | |
| TGGCTCCACTTGGAAAGTTT+GGG | - | chr7.1:36920659-36920678 | None:intergenic | 45.0% | |
| TTGGCTCCACTTGGAAAGTT+TGG | - | chr7.1:36920660-36920679 | None:intergenic | 45.0% | |
| ! | TTCTTTGGAGGAGAGGAGAT+TGG | + | chr7.1:36920542-36920561 | MS.gene89246:CDS | 45.0% |
| CTAGCCAAGGCTCTTTGGTA+TGG | - | chr7.1:36920096-36920115 | None:intergenic | 50.0% | |
| ! | GGACAAGTTCTTTGGAGGAG+AGG | + | chr7.1:36920535-36920554 | MS.gene89246:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 36919823 | 36920781 | 36919823 | ID=MS.gene89246 |
| chr7.1 | mRNA | 36919823 | 36920781 | 36919823 | ID=MS.gene89246.t1;Parent=MS.gene89246 |
| chr7.1 | exon | 36919823 | 36920143 | 36919823 | ID=MS.gene89246.t1.exon1;Parent=MS.gene89246.t1 |
| chr7.1 | CDS | 36919823 | 36920143 | 36919823 | ID=cds.MS.gene89246.t1;Parent=MS.gene89246.t1 |
| chr7.1 | exon | 36920425 | 36920781 | 36920425 | ID=MS.gene89246.t1.exon2;Parent=MS.gene89246.t1 |
| chr7.1 | CDS | 36920425 | 36920781 | 36920425 | ID=cds.MS.gene89246.t1;Parent=MS.gene89246.t1 |
| Gene Sequence |
| Protein sequence |
