Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90786.t1 | AFK45194.1 | 90.3 | 248 | 13 | 5 | 1 | 242 | 1 | 243 | 2.00E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90786.t1 | O80952 | 80.5 | 154 | 30 | 0 | 89 | 242 | 105 | 258 | 2.5e-64 | 246.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90786.t1 | G7IAX4 | 90.3 | 248 | 13 | 5 | 1 | 242 | 1 | 243 | 1.4e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene90786 | -0.814375 | 1.59E-51 | -1.69E-46 |
| MS.gene050592 | MS.gene90786 | -0.813256 | 2.81E-51 | -1.69E-46 |
| MS.gene050945 | MS.gene90786 | -0.81668 | 4.88E-52 | -1.69E-46 |
| MS.gene052533 | MS.gene90786 | -0.812893 | 3.37E-51 | -1.69E-46 |
| MS.gene053272 | MS.gene90786 | 0.807681 | 4.49E-50 | -1.69E-46 |
| MS.gene054142 | MS.gene90786 | -0.82321 | 1.57E-53 | -1.69E-46 |
| MS.gene054178 | MS.gene90786 | -0.800273 | 1.56E-48 | -1.69E-46 |
| MS.gene055765 | MS.gene90786 | -0.805711 | 1.17E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene90786 | -0.829287 | 5.60E-55 | -1.69E-46 |
| MS.gene057148 | MS.gene90786 | 0.846865 | 1.66E-59 | -1.69E-46 |
| MS.gene057684 | MS.gene90786 | 0.811233 | 7.76E-51 | -1.69E-46 |
| MS.gene058095 | MS.gene90786 | -0.817565 | 3.09E-52 | -1.69E-46 |
| MS.gene059026 | MS.gene90786 | 0.848026 | 7.96E-60 | -1.69E-46 |
| MS.gene059778 | MS.gene90786 | -0.849475 | 3.16E-60 | -1.69E-46 |
| MS.gene05985 | MS.gene90786 | 0.891022 | 5.80E-74 | -1.69E-46 |
| MS.gene059901 | MS.gene90786 | 0.852875 | 3.46E-61 | -1.69E-46 |
| MS.gene060512 | MS.gene90786 | -0.844735 | 6.29E-59 | -1.69E-46 |
| MS.gene060522 | MS.gene90786 | -0.809137 | 2.20E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene90786 | -0.836325 | 1.00E-56 | -1.69E-46 |
| MS.gene061188 | MS.gene90786 | -0.810918 | 9.08E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90786.t1 | MTR_1g116280 | 87.903 | 248 | 19 | 5 | 1 | 242 | 1 | 243 | 5.55e-131 | 372 |
| MS.gene90786.t1 | MTR_7g005530 | 81.944 | 144 | 26 | 0 | 99 | 242 | 37 | 180 | 6.03e-82 | 245 |
| MS.gene90786.t1 | MTR_7g005530 | 81.944 | 144 | 26 | 0 | 99 | 242 | 37 | 180 | 6.94e-82 | 245 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90786.t1 | AT2G39290 | 80.128 | 156 | 31 | 0 | 87 | 242 | 103 | 258 | 5.76e-86 | 258 |
| MS.gene90786.t1 | AT3G55030 | 70.286 | 175 | 48 | 1 | 72 | 242 | 20 | 194 | 1.02e-82 | 248 |
Find 102 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGACAAATTAGGGGTTTC+TGG | 0.112582 | 1.4:+88239145 | MS.gene90786:CDS |
| TCTTCTTTCTCAGACAAATT+AGG | 0.144337 | 1.4:+88239136 | MS.gene90786:CDS |
| CTTCTTTCTCAGACAAATTA+GGG | 0.185465 | 1.4:+88239137 | MS.gene90786:CDS |
| GAGAAAGAAGAAGAAGAAAT+TGG | 0.213392 | 1.4:-88239124 | None:intergenic |
| GATCTAAGAATGCACCAAAT+TGG | 0.237949 | 1.4:-88239569 | None:intergenic |
| TGGTGGTGAATGTTTCTATA+AGG | 0.262646 | 1.4:-88239076 | None:intergenic |
| GGTTCAGGTTCAGGTTGTTC+TGG | 0.284744 | 1.4:-88239199 | None:intergenic |
| CTTCTGCAGGGCTCGCCTTA+TGG | 0.285511 | 1.4:+88240978 | MS.gene90786:intron |
| ATGAACTTAAAATCCCAATT+TGG | 0.289154 | 1.4:+88239555 | MS.gene90786:CDS |
| GATGAAGATGGGTTTGGTTC+TGG | 0.292552 | 1.4:-88239047 | None:intergenic |
| TTGTATATATGAGGAAAATT+TGG | 0.305878 | 1.4:+88241008 | MS.gene90786:CDS |
| TCGGTTACTGATTGGCTTGA+TGG | 0.314356 | 1.4:+88239430 | MS.gene90786:CDS |
| GTGAGCAATTTGGAAGGTTC+AGG | 0.341309 | 1.4:-88239214 | None:intergenic |
| TTTGTATATAGCTTTCTATA+TGG | 0.348834 | 1.4:+88239360 | MS.gene90786:intron |
| GATGGGTTTGGTTCTGGACT+TGG | 0.350976 | 1.4:-88239041 | None:intergenic |
| ATGATGGCAATGGCAGGTAT+AGG | 0.358335 | 1.4:-88239807 | None:intergenic |
| GGTGGTGAATGTTTCTATAA+GGG | 0.361170 | 1.4:-88239075 | None:intergenic |
| TTGCTGCCTCGGTTACTGAT+TGG | 0.370730 | 1.4:+88239422 | MS.gene90786:CDS |
| AGAAACATTCACCACCAATA+TGG | 0.370992 | 1.4:+88239082 | MS.gene90786:CDS |
| GGTGGGCAGAGTGAGCAATT+TGG | 0.375572 | 1.4:-88239224 | None:intergenic |
| AGGGCTCGCCTTATGGTCAT+TGG | 0.390373 | 1.4:+88240985 | MS.gene90786:intron |
| ATACCTGCCATTGCCATCAT+TGG | 0.391623 | 1.4:+88239810 | MS.gene90786:CDS |
| ATCTAAGAATGCACCAAATT+GGG | 0.400128 | 1.4:-88239568 | None:intergenic |
| CCTCTAAAAGCTTACTATCC+TGG | 0.403316 | 1.4:-88240448 | None:intergenic |
| CAGGGAATGGGCAGCTTCCC+AGG | 0.403525 | 1.4:+88240430 | MS.gene90786:CDS |
| GGTCATTGGTTGTATATATG+AGG | 0.404412 | 1.4:+88240999 | MS.gene90786:CDS |
| AGAAAGAAGAAGAAGAAATT+GGG | 0.413432 | 1.4:-88239123 | None:intergenic |
| AATTTGGAAGGTTCAGGTTC+AGG | 0.413910 | 1.4:-88239208 | None:intergenic |
| TAGGGAGTAGCCAGGGTAGT+TGG | 0.414090 | 1.4:-88239788 | None:intergenic |
| GGCTGTTGCTGTAAATAACT+TGG | 0.415831 | 1.4:+88240555 | MS.gene90786:intron |
| GATAGAGATGAAGATGGGTT+TGG | 0.420168 | 1.4:-88239053 | None:intergenic |
| AGATTACCATGTCTGCTGTC+AGG | 0.423266 | 1.4:+88240411 | MS.gene90786:intron |
| AGTCCCGGGTCGCGAGGAGG+AGG | 0.426213 | 1.4:-88240615 | None:intergenic |
| TAGCCCTCCTCCTCGCGACC+CGG | 0.434469 | 1.4:+88240611 | MS.gene90786:CDS |
| TGATGGCAATGGCAGGTATA+GGG | 0.434558 | 1.4:-88239806 | None:intergenic |
| CTGTAAATAACTTGGGGAAG+TGG | 0.438180 | 1.4:+88240563 | MS.gene90786:CDS |
| GGTTCTGGACTTGGCGGCAG+TGG | 0.438367 | 1.4:-88239032 | None:intergenic |
| TAGTTGTGACGCGTCCATAT+TGG | 0.442059 | 1.4:-88239096 | None:intergenic |
| ACAGGTACCTTGTCAGCAAC+AGG | 0.446463 | 1.4:-88239591 | None:intergenic |
| CTGCCCACCATTCTCACTCT+TGG | 0.449250 | 1.4:+88239238 | MS.gene90786:CDS |
| CTCTAAAAGCTTACTATCCT+GGG | 0.451476 | 1.4:-88240447 | None:intergenic |
| AGGGAGTAGCCAGGGTAGTT+GGG | 0.452299 | 1.4:-88239787 | None:intergenic |
| CCATGTCTGCTGTCAGGGAA+TGG | 0.452876 | 1.4:+88240417 | MS.gene90786:CDS |
| AGCGGTTGCGCTCAGTTTCA+AGG | 0.457872 | 1.4:-88238978 | None:intergenic |
| CTTATTATGTACTAGACCCT+TGG | 0.460718 | 1.4:+88239749 | MS.gene90786:CDS |
| AGCAATGAAAATTGTGGTAC+TGG | 0.471953 | 1.4:-88239404 | None:intergenic |
| GGTTCAGGTTGTTCTGGTTG+TGG | 0.477923 | 1.4:-88239193 | None:intergenic |
| CTTAGATCCTGTTGCTGACA+AGG | 0.479252 | 1.4:+88239584 | MS.gene90786:CDS |
| GCTGTTGCTGTAAATAACTT+GGG | 0.480082 | 1.4:+88240556 | MS.gene90786:CDS |
| CATTACCTCTCTTCCAATGA+TGG | 0.481958 | 1.4:-88239823 | None:intergenic |
| CATGTCTGCTGTCAGGGAAT+GGG | 0.482501 | 1.4:+88240418 | MS.gene90786:CDS |
| TAAATAGATACCTCAAGTCC+CGG | 0.490023 | 1.4:-88240630 | None:intergenic |
| TATATAGCTTTCTATATGGA+TGG | 0.490246 | 1.4:+88239364 | MS.gene90786:intron |
| TCCTCGCGACCCGGGACTTG+AGG | 0.512133 | 1.4:+88240620 | MS.gene90786:CDS |
| GCTTATGGTTGCCGCCACAT+TGG | 0.512365 | 1.4:+88239725 | MS.gene90786:intron |
| GGGTTTGGTTCTGGACTTGG+CGG | 0.513435 | 1.4:-88239038 | None:intergenic |
| GATTACCATGTCTGCTGTCA+GGG | 0.518665 | 1.4:+88240412 | MS.gene90786:intron |
| GGCAGGTATAGGGAGTAGCC+AGG | 0.520558 | 1.4:-88239796 | None:intergenic |
| GACTTACTAGCAACAAGAAG+GGG | 0.521194 | 1.4:-88239277 | None:intergenic |
| ATATACAACCAATGACCATA+AGG | 0.522448 | 1.4:-88240993 | None:intergenic |
| GTATCTTTGCCCAACTACCC+TGG | 0.523614 | 1.4:+88239778 | MS.gene90786:CDS |
| ACCTCAAGTCCCGGGTCGCG+AGG | 0.532890 | 1.4:-88240621 | None:intergenic |
| CTTCCAATGATGGCAATGGC+AGG | 0.538644 | 1.4:-88239813 | None:intergenic |
| TTCTATATGGATGGTTGGCG+TGG | 0.541796 | 1.4:+88239373 | MS.gene90786:CDS |
| TAGCTTTCTATATGGATGGT+TGG | 0.541898 | 1.4:+88239368 | MS.gene90786:intron |
| CCATTCCCTGACAGCAGACA+TGG | 0.547207 | 1.4:-88240417 | None:intergenic |
| GACACGACCAAGAGTGAGAA+TGG | 0.549394 | 1.4:-88239245 | None:intergenic |
| CTCTCTTCCAATGATGGCAA+TGG | 0.555438 | 1.4:-88239817 | None:intergenic |
| AGCCCTCCTCCTCGCGACCC+GGG | 0.557384 | 1.4:+88240612 | MS.gene90786:CDS |
| ATAAGGGATAGAGATGAAGA+TGG | 0.560789 | 1.4:-88239059 | None:intergenic |
| TTGTGACGCGTCCATATTGG+TGG | 0.562578 | 1.4:-88239093 | None:intergenic |
| ACTTGGCGGCAGTGGCTGAA+CGG | 0.567037 | 1.4:-88239024 | None:intergenic |
| AAGACTTACTAGCAACAAGA+AGG | 0.569579 | 1.4:-88239279 | None:intergenic |
| GGCAAAGATACCAACATCCA+AGG | 0.570230 | 1.4:-88239766 | None:intergenic |
| TGTACTAGACCCTTGGATGT+TGG | 0.572861 | 1.4:+88239756 | MS.gene90786:CDS |
| TCAGGTTGTTCTGGTTGTGG+TGG | 0.573232 | 1.4:-88239190 | None:intergenic |
| TAAGGGATAGAGATGAAGAT+GGG | 0.578208 | 1.4:-88239058 | None:intergenic |
| GGTGAATTGGTTGATGATGT+CGG | 0.579366 | 1.4:+88238955 | None:intergenic |
| CGACCAAGAGTGAGAATGGT+GGG | 0.581343 | 1.4:-88239241 | None:intergenic |
| ACAGATAGAAGAAGAAGAAG+CGG | 0.581371 | 1.4:-88238996 | None:intergenic |
| TGATGGCTATATTGCTCGCA+AGG | 0.583037 | 1.4:+88239447 | MS.gene90786:CDS |
| AGACTTACTAGCAACAAGAA+GGG | 0.595087 | 1.4:-88239278 | None:intergenic |
| CATTGCCATCATTGGAAGAG+AGG | 0.598467 | 1.4:+88239818 | MS.gene90786:CDS |
| GTCCCGGGTCGCGAGGAGGA+GGG | 0.609652 | 1.4:-88240614 | None:intergenic |
| AAATAGATACCTCAAGTCCC+GGG | 0.611811 | 1.4:-88240629 | None:intergenic |
| TTCTTTCTCAGACAAATTAG+GGG | 0.614292 | 1.4:+88239138 | MS.gene90786:CDS |
| ATATATGAGGAAAATTTGGA+AGG | 0.614928 | 1.4:+88241012 | MS.gene90786:CDS |
| CGAGGCAGCAATGAAAATTG+TGG | 0.615674 | 1.4:-88239410 | None:intergenic |
| GCAGGTATAGGGAGTAGCCA+GGG | 0.619917 | 1.4:-88239795 | None:intergenic |
| TCAAGTCCCGGGTCGCGAGG+AGG | 0.628305 | 1.4:-88240618 | None:intergenic |
| GGCAGAGTGAGCAATTTGGA+AGG | 0.632472 | 1.4:-88239220 | None:intergenic |
| AAATTTGGAAGGTGTTGTTG+AGG | 0.632998 | 1.4:+88241023 | MS.gene90786:CDS |
| CTGTTGCTGTAAATAACTTG+GGG | 0.642896 | 1.4:+88240557 | MS.gene90786:CDS |
| TGGCGGCAGTGGCTGAACGG+AGG | 0.655379 | 1.4:-88239021 | None:intergenic |
| ACTTACTAGCAACAAGAAGG+GGG | 0.658643 | 1.4:-88239276 | None:intergenic |
| GCAAAGATACCAACATCCAA+GGG | 0.664746 | 1.4:-88239765 | None:intergenic |
| ACATAATAAGACCAATGTGG+CGG | 0.672036 | 1.4:-88239736 | None:intergenic |
| ATCAAGCCAATCAGTAACCG+AGG | 0.672140 | 1.4:-88239428 | None:intergenic |
| GGCTAACGCAGTCATCTGTG+TGG | 0.691702 | 1.4:-88240593 | None:intergenic |
| ACGACCAAGAGTGAGAATGG+TGG | 0.693774 | 1.4:-88239242 | None:intergenic |
| AATGAAAATTGTGGTACTGG+CGG | 0.723059 | 1.4:-88239401 | None:intergenic |
| AGTACATAATAAGACCAATG+TGG | 0.733330 | 1.4:-88239739 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAGAAAAAAAATAAAAATA+AGG | - | chr1.4:88240378-88240397 | None:intergenic | 10.0% |
| !! | AATAAGTTATAAGTAAAGCA+TGG | - | chr1.4:88239870-88239889 | None:intergenic | 20.0% |
| !! | AATGAATGTGAAATTGTAAT+TGG | - | chr1.4:88239331-88239350 | None:intergenic | 20.0% |
| !! | ATAAGTTATAAGTAAAGCAT+GGG | - | chr1.4:88239869-88239888 | None:intergenic | 20.0% |
| !! | ATAATGAAACTTGGTATAAT+AGG | + | chr1.4:88240534-88240553 | MS.gene90786:intron | 20.0% |
| !! | ATTGTATTGTAATATGCAAT+AGG | - | chr1.4:88239628-88239647 | None:intergenic | 20.0% |
| !! | CAAATATCAAACATAGTAAT+AGG | - | chr1.4:88239520-88239539 | None:intergenic | 20.0% |
| !! | TAAAAATAAGGAATCTGATT+TGG | - | chr1.4:88240366-88240385 | None:intergenic | 20.0% |
| !! | TTGTATATATGAGGAAAATT+TGG | + | chr1.4:88241008-88241027 | MS.gene90786:CDS | 20.0% |
| !! | TTTGTATATAGCTTTCTATA+TGG | + | chr1.4:88239360-88239379 | MS.gene90786:intron | 20.0% |
| !!! | TATAGAAAAATAACTCCTTT+TGG | + | chr1.4:88240785-88240804 | MS.gene90786:intron | 20.0% |
| !!! | TCTATTTACTTTGTATTTTG+AGG | + | chr1.4:88240645-88240664 | MS.gene90786:intron | 20.0% |
| ! | AAATTGTAATTGGCATATGA+GGG | - | chr1.4:88239321-88239340 | None:intergenic | 25.0% |
| ! | AACATAGTAATAGGAAAAGT+AGG | - | chr1.4:88239511-88239530 | None:intergenic | 25.0% |
| ! | ACATAGTAATAGGAAAAGTA+GGG | - | chr1.4:88239510-88239529 | None:intergenic | 25.0% |
| ! | AGAAAGAAGAAGAAGAAATT+GGG | - | chr1.4:88239126-88239145 | None:intergenic | 25.0% |
| ! | ATATATGAGGAAAATTTGGA+AGG | + | chr1.4:88241012-88241031 | MS.gene90786:CDS | 25.0% |
| ! | ATGAACTTAAAATCCCAATT+TGG | + | chr1.4:88239555-88239574 | MS.gene90786:CDS | 25.0% |
| ! | ATTGCTTGATAAACAAACAT+TGG | - | chr1.4:88240067-88240086 | None:intergenic | 25.0% |
| ! | GACTGAAATCCATATTTATA+TGG | + | chr1.4:88240258-88240277 | MS.gene90786:intron | 25.0% |
| ! | GGCTAATTACCATATAAATA+TGG | - | chr1.4:88240270-88240289 | None:intergenic | 25.0% |
| ! | TATATAGCTTTCTATATGGA+TGG | + | chr1.4:88239364-88239383 | MS.gene90786:intron | 25.0% |
| ! | TCAAAAGCTTCATTGTTTAA+TGG | + | chr1.4:88240236-88240255 | MS.gene90786:intron | 25.0% |
| ! | TTGTAATATGCAATAGGAAT+AGG | - | chr1.4:88239622-88239641 | None:intergenic | 25.0% |
| !! | AAAATAACTCCTTTTGGATT+TGG | + | chr1.4:88240791-88240810 | MS.gene90786:intron | 25.0% |
| !! | AAATAACTCCTTTTGGATTT+GGG | + | chr1.4:88240792-88240811 | MS.gene90786:intron | 25.0% |
| !! | CATATTTTCTTCTGATTTAC+TGG | + | chr1.4:88240326-88240345 | MS.gene90786:intron | 25.0% |
| !!! | AATAATTTGCTCTAAACTTC+AGG | + | chr1.4:88240739-88240758 | MS.gene90786:intron | 25.0% |
| !!! | TATTTAACTTGCCTTTACTT+TGG | - | chr1.4:88239990-88240009 | None:intergenic | 25.0% |
| AATATGCAATAGGAATAGGT+AGG | - | chr1.4:88239618-88239637 | None:intergenic | 30.0% | |
| AATTAAGCCAGACAATTTGT+TGG | + | chr1.4:88240142-88240161 | MS.gene90786:intron | 30.0% | |
| AGTACATAATAAGACCAATG+TGG | - | chr1.4:88239742-88239761 | None:intergenic | 30.0% | |
| ATATACAACCAATGACCATA+AGG | - | chr1.4:88240996-88241015 | None:intergenic | 30.0% | |
| ATCTAAGAATGCACCAAATT+GGG | - | chr1.4:88239571-88239590 | None:intergenic | 30.0% | |
| CTTATAAACCCAAATCCAAA+AGG | - | chr1.4:88240803-88240822 | None:intergenic | 30.0% | |
| CTTCTTTCTCAGACAAATTA+GGG | + | chr1.4:88239137-88239156 | MS.gene90786:CDS | 30.0% | |
| GAAATTGTAATTGGCATATG+AGG | - | chr1.4:88239322-88239341 | None:intergenic | 30.0% | |
| GAGAAAGAAGAAGAAGAAAT+TGG | - | chr1.4:88239127-88239146 | None:intergenic | 30.0% | |
| GCAAAGCAAAATACAATTAC+AGG | - | chr1.4:88240183-88240202 | None:intergenic | 30.0% | |
| TCTTCTTTCTCAGACAAATT+AGG | + | chr1.4:88239136-88239155 | MS.gene90786:CDS | 30.0% | |
| TGAGCTTGTATAATGAAACT+TGG | + | chr1.4:88240525-88240544 | MS.gene90786:intron | 30.0% | |
| TTAACTATGCATAATGACCA+TGG | - | chr1.4:88240205-88240224 | None:intergenic | 30.0% | |
| TTCTTTCTCAGACAAATTAG+GGG | + | chr1.4:88239138-88239157 | MS.gene90786:CDS | 30.0% | |
| ! | AATTGTATTTTGCTTTGCCA+TGG | + | chr1.4:88240185-88240204 | MS.gene90786:intron | 30.0% |
| ! | TATGATGTCTCAAAAGCATA+AGG | - | chr1.4:88240310-88240329 | None:intergenic | 30.0% |
| !!! | TGTTTTAATCTAGAATGCTC+TGG | + | chr1.4:88240098-88240117 | MS.gene90786:intron | 30.0% |
| AAGACTTACTAGCAACAAGA+AGG | - | chr1.4:88239282-88239301 | None:intergenic | 35.0% | |
| AAGGAAAATACACGAGAGTA+TGG | - | chr1.4:88240291-88240310 | None:intergenic | 35.0% | |
| AATGAACTGAGCCAAAGTAA+AGG | + | chr1.4:88239976-88239995 | MS.gene90786:intron | 35.0% | |
| ACAGATAGAAGAAGAAGAAG+CGG | - | chr1.4:88238999-88239018 | None:intergenic | 35.0% | |
| ACATAATAAGACCAATGTGG+CGG | - | chr1.4:88239739-88239758 | None:intergenic | 35.0% | |
| AGAAACATTCACCACCAATA+TGG | + | chr1.4:88239082-88239101 | MS.gene90786:CDS | 35.0% | |
| AGACTTACTAGCAACAAGAA+GGG | - | chr1.4:88239281-88239300 | None:intergenic | 35.0% | |
| AGCAATGAAAATTGTGGTAC+TGG | - | chr1.4:88239407-88239426 | None:intergenic | 35.0% | |
| ATAAGGGATAGAGATGAAGA+TGG | - | chr1.4:88239062-88239081 | None:intergenic | 35.0% | |
| CTCCATGACTGAAGAAAAAT+GGG | - | chr1.4:88240916-88240935 | None:intergenic | 35.0% | |
| CTGTTGCTGTAAATAACTTG+GGG | + | chr1.4:88240557-88240576 | MS.gene90786:CDS | 35.0% | |
| CTTATTATGTACTAGACCCT+TGG | + | chr1.4:88239749-88239768 | MS.gene90786:CDS | 35.0% | |
| GAATTCATATTTCCCTTGTC+TGG | + | chr1.4:88240037-88240056 | MS.gene90786:intron | 35.0% | |
| GATCTAAGAATGCACCAAAT+TGG | - | chr1.4:88239572-88239591 | None:intergenic | 35.0% | |
| GCTGTTGCTGTAAATAACTT+GGG | + | chr1.4:88240556-88240575 | MS.gene90786:CDS | 35.0% | |
| TAAATAGATACCTCAAGTCC+CGG | - | chr1.4:88240633-88240652 | None:intergenic | 35.0% | |
| TAAGGGATAGAGATGAAGAT+GGG | - | chr1.4:88239061-88239080 | None:intergenic | 35.0% | |
| TAGCTTTCTATATGGATGGT+TGG | + | chr1.4:88239368-88239387 | MS.gene90786:intron | 35.0% | |
| ! | AAAAGTAGGGTTAGTAAGTG+TGG | - | chr1.4:88239497-88239516 | None:intergenic | 35.0% |
| ! | AAAGTAGGGTTAGTAAGTGT+GGG | - | chr1.4:88239496-88239515 | None:intergenic | 35.0% |
| ! | AATGAAAATTGTGGTACTGG+CGG | - | chr1.4:88239404-88239423 | None:intergenic | 35.0% |
| ! | CGCCTAAAACACAATTTTCA+GGG | - | chr1.4:88240861-88240880 | None:intergenic | 35.0% |
| ! | CTAGTTGATTCAAGTGTACA+GGG | - | chr1.4:88240485-88240504 | None:intergenic | 35.0% |
| ! | CTCTAAAAGCTTACTATCCT+GGG | - | chr1.4:88240450-88240469 | None:intergenic | 35.0% |
| ! | GCCTAAAACACAATTTTCAG+GGG | - | chr1.4:88240860-88240879 | None:intergenic | 35.0% |
| ! | GGTCATTGGTTGTATATATG+AGG | + | chr1.4:88240999-88241018 | MS.gene90786:CDS | 35.0% |
| ! | GGTGGTGAATGTTTCTATAA+GGG | - | chr1.4:88239078-88239097 | None:intergenic | 35.0% |
| ! | TAATCAGTTTTCCTGTGTGT+TGG | + | chr1.4:88240008-88240027 | MS.gene90786:intron | 35.0% |
| ! | TAGTTGATTCAAGTGTACAG+GGG | - | chr1.4:88240484-88240503 | None:intergenic | 35.0% |
| ! | TCCCCTGAAAATTGTGTTTT+AGG | + | chr1.4:88240856-88240875 | MS.gene90786:intron | 35.0% |
| ! | TGGTGGTGAATGTTTCTATA+AGG | - | chr1.4:88239079-88239098 | None:intergenic | 35.0% |
| !! | AAATTTGGAAGGTGTTGTTG+AGG | + | chr1.4:88241023-88241042 | MS.gene90786:CDS | 35.0% |
| !! | TGTTGCTTTATACTTCTGCA+GGG | + | chr1.4:88240966-88240985 | MS.gene90786:intron | 35.0% |
| !! | TTCCCATTTTTCTTCAGTCA+TGG | + | chr1.4:88240911-88240930 | MS.gene90786:intron | 35.0% |
| AAACATTGGAGATCCAGACA+AGG | - | chr1.4:88240053-88240072 | None:intergenic | 40.0% | |
| AAATAGATACCTCAAGTCCC+GGG | - | chr1.4:88240632-88240651 | None:intergenic | 40.0% | |
| AACATTGGAGATCCAGACAA+GGG | - | chr1.4:88240052-88240071 | None:intergenic | 40.0% | |
| AATTCTCCAATCCAACACAC+AGG | - | chr1.4:88240022-88240041 | None:intergenic | 40.0% | |
| ACTTACTAGCAACAAGAAGG+GGG | - | chr1.4:88239279-88239298 | None:intergenic | 40.0% | |
| AGCAGACATGGTAATCTACT+TGG | - | chr1.4:88240408-88240427 | None:intergenic | 40.0% | |
| CAATAGGAATAGGTAGGTAC+AGG | - | chr1.4:88239612-88239631 | None:intergenic | 40.0% | |
| CATTACCTCTCTTCCAATGA+TGG | - | chr1.4:88239826-88239845 | None:intergenic | 40.0% | |
| CCTCCATGACTGAAGAAAAA+TGG | - | chr1.4:88240917-88240936 | None:intergenic | 40.0% | |
| CGATATGCCAACAAATTGTC+TGG | - | chr1.4:88240152-88240171 | None:intergenic | 40.0% | |
| CTGTAAATAACTTGGGGAAG+TGG | + | chr1.4:88240563-88240582 | MS.gene90786:CDS | 40.0% | |
| CTTCATGTATCACCACTTGT+GGG | + | chr1.4:88239930-88239949 | MS.gene90786:intron | 40.0% | |
| CTTCTACTCATTGCAGCTTA+TGG | + | chr1.4:88239710-88239729 | MS.gene90786:intron | 40.0% | |
| GACTTACTAGCAACAAGAAG+GGG | - | chr1.4:88239280-88239299 | None:intergenic | 40.0% | |
| GCAAAGATACCAACATCCAA+GGG | - | chr1.4:88239768-88239787 | None:intergenic | 40.0% | |
| GGCTGTTGCTGTAAATAACT+TGG | + | chr1.4:88240555-88240574 | MS.gene90786:intron | 40.0% | |
| GTACACTTGAATCAACTAGC+TGG | + | chr1.4:88240486-88240505 | MS.gene90786:intron | 40.0% | |
| TCAGACAAATTAGGGGTTTC+TGG | + | chr1.4:88239145-88239164 | MS.gene90786:CDS | 40.0% | |
| TCTTCATGTATCACCACTTG+TGG | + | chr1.4:88239929-88239948 | MS.gene90786:intron | 40.0% | |
| TGTAATTGGCATATGAGGGA+TGG | - | chr1.4:88239317-88239336 | None:intergenic | 40.0% | |
| ! | AATTTGGAAGGTTCAGGTTC+AGG | - | chr1.4:88239211-88239230 | None:intergenic | 40.0% |
| ! | AGTTTTCCTGTGTGTTGGAT+TGG | + | chr1.4:88240013-88240032 | MS.gene90786:intron | 40.0% |
| ! | CACAATTTTCATTGCTGCCT+CGG | + | chr1.4:88239411-88239430 | MS.gene90786:CDS | 40.0% |
| ! | CCAGGATAGTAAGCTTTTAG+AGG | + | chr1.4:88240448-88240467 | MS.gene90786:CDS | 40.0% |
| ! | CCTCTAAAAGCTTACTATCC+TGG | - | chr1.4:88240451-88240470 | None:intergenic | 40.0% |
| ! | GATAGAGATGAAGATGGGTT+TGG | - | chr1.4:88239056-88239075 | None:intergenic | 40.0% |
| ! | GCGCCTAAAACACAATTTTC+AGG | - | chr1.4:88240862-88240881 | None:intergenic | 40.0% |
| ! | GCTAGTTGATTCAAGTGTAC+AGG | - | chr1.4:88240486-88240505 | None:intergenic | 40.0% |
| !! | CCATTTTTCTTCAGTCATGG+AGG | + | chr1.4:88240914-88240933 | MS.gene90786:intron | 40.0% |
| !! | GTGTTGCTTTATACTTCTGC+AGG | + | chr1.4:88240965-88240984 | MS.gene90786:intron | 40.0% |
| AAGAAGCAACCTCACATGGT+TGG | - | chr1.4:88239913-88239932 | None:intergenic | 45.0% | |
| AGATTACCATGTCTGCTGTC+AGG | + | chr1.4:88240411-88240430 | MS.gene90786:intron | 45.0% | |
| ATACCTGCCATTGCCATCAT+TGG | + | chr1.4:88239810-88239829 | MS.gene90786:CDS | 45.0% | |
| ATCAAGCCAATCAGTAACCG+AGG | - | chr1.4:88239431-88239450 | None:intergenic | 45.0% | |
| ATGATGGCAATGGCAGGTAT+AGG | - | chr1.4:88239810-88239829 | None:intergenic | 45.0% | |
| ATTGGCATATGAGGGATGGA+AGG | - | chr1.4:88239313-88239332 | None:intergenic | 45.0% | |
| CATGAAGAAGCAACCTCACA+TGG | - | chr1.4:88239917-88239936 | None:intergenic | 45.0% | |
| CATTGCCATCATTGGAAGAG+AGG | + | chr1.4:88239818-88239837 | MS.gene90786:CDS | 45.0% | |
| CGAGGCAGCAATGAAAATTG+TGG | - | chr1.4:88239413-88239432 | None:intergenic | 45.0% | |
| CTCTCTTCCAATGATGGCAA+TGG | - | chr1.4:88239820-88239839 | None:intergenic | 45.0% | |
| CTTAGATCCTGTTGCTGACA+AGG | + | chr1.4:88239584-88239603 | MS.gene90786:CDS | 45.0% | |
| GATTACCATGTCTGCTGTCA+GGG | + | chr1.4:88240412-88240431 | MS.gene90786:intron | 45.0% | |
| GGCAAAGATACCAACATCCA+AGG | - | chr1.4:88239769-88239788 | None:intergenic | 45.0% | |
| GTATCACCACTTGTGGGATA+AGG | + | chr1.4:88239936-88239955 | MS.gene90786:intron | 45.0% | |
| GTGAGCAATTTGGAAGGTTC+AGG | - | chr1.4:88239217-88239236 | None:intergenic | 45.0% | |
| TAGTTGTGACGCGTCCATAT+TGG | - | chr1.4:88239099-88239118 | None:intergenic | 45.0% | |
| TGATGGCAATGGCAGGTATA+GGG | - | chr1.4:88239809-88239828 | None:intergenic | 45.0% | |
| TGATGGCTATATTGCTCGCA+AGG | + | chr1.4:88239447-88239466 | MS.gene90786:CDS | 45.0% | |
| TGTACTAGACCCTTGGATGT+TGG | + | chr1.4:88239756-88239775 | MS.gene90786:CDS | 45.0% | |
| TTCTATATGGATGGTTGGCG+TGG | + | chr1.4:88239373-88239392 | MS.gene90786:CDS | 45.0% | |
| ! | GATGAAGATGGGTTTGGTTC+TGG | - | chr1.4:88239050-88239069 | None:intergenic | 45.0% |
| !! | TCGGTTACTGATTGGCTTGA+TGG | + | chr1.4:88239430-88239449 | MS.gene90786:CDS | 45.0% |
| AACACCAGACCCCACTACAA+AGG | - | chr1.4:88240945-88240964 | None:intergenic | 50.0% | |
| ACAGGTACCTTGTCAGCAAC+AGG | - | chr1.4:88239594-88239613 | None:intergenic | 50.0% | |
| ACATCAACGCCAACCATGTG+AGG | + | chr1.4:88239901-88239920 | MS.gene90786:intron | 50.0% | |
| ACCACTTGTGGGATAAGGCT+TGG | + | chr1.4:88239941-88239960 | MS.gene90786:intron | 50.0% | |
| ACGACCAAGAGTGAGAATGG+TGG | - | chr1.4:88239245-88239264 | None:intergenic | 50.0% | |
| CATGTCTGCTGTCAGGGAAT+GGG | + | chr1.4:88240418-88240437 | MS.gene90786:CDS | 50.0% | |
| CGACCAAGAGTGAGAATGGT+GGG | - | chr1.4:88239244-88239263 | None:intergenic | 50.0% | |
| CTTCCAATGATGGCAATGGC+AGG | - | chr1.4:88239816-88239835 | None:intergenic | 50.0% | |
| GACACGACCAAGAGTGAGAA+TGG | - | chr1.4:88239248-88239267 | None:intergenic | 50.0% | |
| GGCAGAGTGAGCAATTTGGA+AGG | - | chr1.4:88239223-88239242 | None:intergenic | 50.0% | |
| GTATCTTTGCCCAACTACCC+TGG | + | chr1.4:88239778-88239797 | MS.gene90786:CDS | 50.0% | |
| TTGCTGCCTCGGTTACTGAT+TGG | + | chr1.4:88239422-88239441 | MS.gene90786:CDS | 50.0% | |
| TTGTGACGCGTCCATATTGG+TGG | - | chr1.4:88239096-88239115 | None:intergenic | 50.0% | |
| ! | ACCAAGCCTTATCCCACAAG+TGG | - | chr1.4:88239945-88239964 | None:intergenic | 50.0% |
| ! | GTGGGATAAGGCTTGGTTGT+TGG | + | chr1.4:88239948-88239967 | MS.gene90786:intron | 50.0% |
| ! | TCAGGTTGTTCTGGTTGTGG+TGG | - | chr1.4:88239193-88239212 | None:intergenic | 50.0% |
| !! | GATGGGTTTGGTTCTGGACT+TGG | - | chr1.4:88239044-88239063 | None:intergenic | 50.0% |
| !! | GGTTCAGGTTCAGGTTGTTC+TGG | - | chr1.4:88239202-88239221 | None:intergenic | 50.0% |
| !! | GGTTCAGGTTGTTCTGGTTG+TGG | - | chr1.4:88239196-88239215 | None:intergenic | 50.0% |
| AGCAACAAGAAGGGGGACTG+CGG | - | chr1.4:88239272-88239291 | None:intergenic | 55.0% | |
| AGCGGTTGCGCTCAGTTTCA+AGG | - | chr1.4:88238981-88239000 | None:intergenic | 55.0% | |
| AGGGAGTAGCCAGGGTAGTT+GGG | - | chr1.4:88239790-88239809 | None:intergenic | 55.0% | |
| AGGGCTCGCCTTATGGTCAT+TGG | + | chr1.4:88240985-88241004 | MS.gene90786:intron | 55.0% | |
| CCATGTCTGCTGTCAGGGAA+TGG | + | chr1.4:88240417-88240436 | MS.gene90786:CDS | 55.0% | |
| CCATTCCCTGACAGCAGACA+TGG | - | chr1.4:88240420-88240439 | None:intergenic | 55.0% | |
| CTGCCCACCATTCTCACTCT+TGG | + | chr1.4:88239238-88239257 | MS.gene90786:CDS | 55.0% | |
| GAGGAGCTGCCTTTGTAGTG+GGG | + | chr1.4:88240933-88240952 | MS.gene90786:intron | 55.0% | |
| GCAGGTATAGGGAGTAGCCA+GGG | - | chr1.4:88239798-88239817 | None:intergenic | 55.0% | |
| GCTTATGGTTGCCGCCACAT+TGG | + | chr1.4:88239725-88239744 | MS.gene90786:intron | 55.0% | |
| GGAGGAGCTGCCTTTGTAGT+GGG | + | chr1.4:88240932-88240951 | MS.gene90786:intron | 55.0% | |
| GGCTAACGCAGTCATCTGTG+TGG | - | chr1.4:88240596-88240615 | None:intergenic | 55.0% | |
| GGTGGGCAGAGTGAGCAATT+TGG | - | chr1.4:88239227-88239246 | None:intergenic | 55.0% | |
| TAGGGAGTAGCCAGGGTAGT+TGG | - | chr1.4:88239791-88239810 | None:intergenic | 55.0% | |
| TGGAGGAGCTGCCTTTGTAG+TGG | + | chr1.4:88240931-88240950 | MS.gene90786:intron | 55.0% | |
| ! | AGGCGCTGTCATTGACTGAG+AGG | + | chr1.4:88240876-88240895 | MS.gene90786:intron | 55.0% |
| !! | GGGTTTGGTTCTGGACTTGG+CGG | - | chr1.4:88239041-88239060 | None:intergenic | 55.0% |
| ACTTGGCGGCAGTGGCTGAA+CGG | - | chr1.4:88239027-88239046 | None:intergenic | 60.0% | |
| CTTCTGCAGGGCTCGCCTTA+TGG | + | chr1.4:88240978-88240997 | MS.gene90786:intron | 60.0% | |
| GGCAGGTATAGGGAGTAGCC+AGG | - | chr1.4:88239799-88239818 | None:intergenic | 60.0% | |
| ! | GCTGCCTTTGTAGTGGGGTC+TGG | + | chr1.4:88240938-88240957 | MS.gene90786:intron | 60.0% |
| CAGGGAATGGGCAGCTTCCC+AGG | + | chr1.4:88240430-88240449 | MS.gene90786:CDS | 65.0% | |
| !! | GGTTCTGGACTTGGCGGCAG+TGG | - | chr1.4:88239035-88239054 | None:intergenic | 65.0% |
| ACCTCAAGTCCCGGGTCGCG+AGG | - | chr1.4:88240624-88240643 | None:intergenic | 70.0% | |
| TAGCCCTCCTCCTCGCGACC+CGG | + | chr1.4:88240611-88240630 | MS.gene90786:CDS | 70.0% | |
| TCAAGTCCCGGGTCGCGAGG+AGG | - | chr1.4:88240621-88240640 | None:intergenic | 70.0% | |
| TCCTCGCGACCCGGGACTTG+AGG | + | chr1.4:88240620-88240639 | MS.gene90786:CDS | 70.0% | |
| TGGCGGCAGTGGCTGAACGG+AGG | - | chr1.4:88239024-88239043 | None:intergenic | 70.0% | |
| AGCCCTCCTCCTCGCGACCC+GGG | + | chr1.4:88240612-88240631 | MS.gene90786:CDS | 75.0% | |
| AGTCCCGGGTCGCGAGGAGG+AGG | - | chr1.4:88240618-88240637 | None:intergenic | 75.0% | |
| GTCCCGGGTCGCGAGGAGGA+GGG | - | chr1.4:88240617-88240636 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 88238968 | 88241053 | 88238968 | ID=MS.gene90786 |
| chr1.4 | mRNA | 88238968 | 88241053 | 88238968 | ID=MS.gene90786.t1;Parent=MS.gene90786 |
| chr1.4 | exon | 88238968 | 88239292 | 88238968 | ID=MS.gene90786.t1.exon1;Parent=MS.gene90786.t1 |
| chr1.4 | CDS | 88238968 | 88239292 | 88238968 | ID=cds.MS.gene90786.t1;Parent=MS.gene90786.t1 |
| chr1.4 | exon | 88239371 | 88239468 | 88239371 | ID=MS.gene90786.t1.exon2;Parent=MS.gene90786.t1 |
| chr1.4 | CDS | 88239371 | 88239468 | 88239371 | ID=cds.MS.gene90786.t1;Parent=MS.gene90786.t1 |
| chr1.4 | exon | 88239555 | 88239605 | 88239555 | ID=MS.gene90786.t1.exon3;Parent=MS.gene90786.t1 |
| chr1.4 | CDS | 88239555 | 88239605 | 88239555 | ID=cds.MS.gene90786.t1;Parent=MS.gene90786.t1 |
| chr1.4 | exon | 88239726 | 88239839 | 88239726 | ID=MS.gene90786.t1.exon4;Parent=MS.gene90786.t1 |
| chr1.4 | CDS | 88239726 | 88239839 | 88239726 | ID=cds.MS.gene90786.t1;Parent=MS.gene90786.t1 |
| chr1.4 | exon | 88240413 | 88240469 | 88240413 | ID=MS.gene90786.t1.exon5;Parent=MS.gene90786.t1 |
| chr1.4 | CDS | 88240413 | 88240469 | 88240413 | ID=cds.MS.gene90786.t1;Parent=MS.gene90786.t1 |
| chr1.4 | exon | 88240556 | 88240641 | 88240556 | ID=MS.gene90786.t1.exon6;Parent=MS.gene90786.t1 |
| chr1.4 | CDS | 88240556 | 88240641 | 88240556 | ID=cds.MS.gene90786.t1;Parent=MS.gene90786.t1 |
| chr1.4 | exon | 88240987 | 88241053 | 88240987 | ID=MS.gene90786.t1.exon7;Parent=MS.gene90786.t1 |
| chr1.4 | CDS | 88240987 | 88241053 | 88240987 | ID=cds.MS.gene90786.t1;Parent=MS.gene90786.t1 |
| Gene Sequence |
| Protein sequence |
