AlfalfaGEDB | MS.gene95352

M. sativa cultivar XinJiangDaYe / MS.gene95352

KEGG: -
GO: GO:0003674 GO:0005198 GO:0005199 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840
PFAM: PF01190.20 PF04554.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95352.t1	RHN78097.1	95.5	133	6	0	327	459	350	482	3.20E-67	266.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95352.t1	A0A396JTW6	95.5	133	6	0	327	459	350	482	2.3e-67	266.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene95352	0.80865	2.79E-50	-1.69E-46
MS.gene050397	MS.gene95352	-0.809408	1.92E-50	-1.69E-46
MS.gene050426	MS.gene95352	0.814671	1.37E-51	-1.69E-46
MS.gene050464	MS.gene95352	-0.806072	9.82E-50	-1.69E-46
MS.gene050529	MS.gene95352	-0.812113	4.99E-51	-1.69E-46
MS.gene050670	MS.gene95352	-0.84343	1.41E-58	-1.69E-46
MS.gene050971	MS.gene95352	-0.835743	1.40E-56	-1.69E-46
MS.gene051525	MS.gene95352	-0.821456	4.00E-53	-1.69E-46
MS.gene051552	MS.gene95352	0.806383	8.45E-50	-1.69E-46
MS.gene051996	MS.gene95352	0.802894	4.52E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95352.t1	MTR_1g033130	71.744	407	76	3	314	689	417	815	5.44e-117	383
MS.gene95352.t1	MTR_1g033130	81.967	122	6	1	464	569	714	835	1.53e-18	91.7
MS.gene95352.t1	MTR_1g033080	91.971	274	22	0	314	587	450	723	1.90e-112	370
MS.gene95352.t1	MTR_1g033080	56.190	105	7	1	1	66	1	105	1.19e-12	72.4
MS.gene95352.t1	MTR_1918s0010	70.673	208	6	2	1	153	1	208	2.63e-35	134
MS.gene95352.t1	MTR_1g116947	63.978	186	28	4	1	153	1	180	1.05e-16	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 427 sgRNAs with CRISPR-Local

Find 494 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTATGCCATCACAGTTA+AGG	0.513967	1.3:+18264764	MS.gene95352:CDS
AACAATGCCATTGCCATTGG+TGG	0.530381	1.3:-18263266	None:intergenic
AACCCTTAGGTGGAGCATAA+AGG	0.394456	1.3:-18264830	None:intergenic
AAGAACCTTAGGTGGTGGTG+GGG	0.643468	1.3:-18264122	None:intergenic
AAGGCCAGTAGCCCCAAAAG+GGG	0.656017	1.3:+18263233	MS.gene95352:CDS
AAGGGCAGCCTTGCACACTG+TGG	0.726986	1.3:-18264811	None:intergenic
AATAAGGAGGTGGAGGTGAT+GGG	0.435239	1.3:-18263658	None:intergenic
AATATGGAGGTGAGTAATAA+TGG	0.359390	1.3:-18265073	None:intergenic
AATATGGAGGTGGTGGTGAT+GGG	0.475325	1.3:-18265817	None:intergenic
ACAATCTCCTTGGGTGGAGG+AGG	0.532389	1.3:-18265467	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATGGAGGTGAGTAATAA+TGG	-	chr1.3:18265076-18265095	None:intergenic	30.0%
AGATTTGTAATAGTATGGAG+GGG	-	chr1.3:18265735-18265754	None:intergenic	30.0%
AGTATGGAGGAGAATAATAA+TGG	-	chr1.3:18265340-18265359	None:intergenic	30.0%
ATGAATCTCATTACTGAAAC+TGG	-	chr1.3:18264398-18264417	None:intergenic	30.0%
CTTATAATAATAAGGTGGTG+GGG	-	chr1.3:18265588-18265607	None:intergenic	30.0%
GAAGGATGTGATATTTCTTT+AGG	-	chr1.3:18265671-18265690	None:intergenic	30.0%
GACTTATAATAATAAGGTGG+TGG	-	chr1.3:18265590-18265609	None:intergenic	30.0%
GAGATTTGTAATAGTATGGA+GGG	-	chr1.3:18265736-18265755	None:intergenic	30.0%
GATTTGTAATAATAAGGAGG+TGG	-	chr1.3:18263671-18263690	None:intergenic	30.0%
GGTGACTTATAATAATAAGG+TGG	-	chr1.3:18265593-18265612	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	18263224	18266201	18263224	ID=MS.gene95352
chr1.3	mRNA	18263224	18266201	18263224	ID=MS.gene95352.t1;Parent=MS.gene95352
chr1.3	exon	18263224	18264298	18263224	ID=MS.gene95352.t1.exon1;Parent=MS.gene95352.t1
chr1.3	CDS	18263224	18264298	18263224	ID=cds.MS.gene95352.t1;Parent=MS.gene95352.t1
chr1.3	exon	18264691	18266201	18264691	ID=MS.gene95352.t1.exon2;Parent=MS.gene95352.t1
chr1.3	CDS	18264691	18266201	18264691	ID=cds.MS.gene95352.t1;Parent=MS.gene95352.t1

Gene Sequence

>MS.gene95352

ATGACTCCCAAGGCCAGTAGCCCCAAAAGGGGTCATAACTGGCCACCAATGGCAATGGCATTGTTCATTGCTTTGATTTCCACTTCTGTCGTGTCTGCTGCCGCTAATAGTTATATCTATTCTTCTCCTCCACCACCTTACGTGTATAAGTCACCACCTCCTCCATCACCGTCACCTCCACCACCATATGAGCACAAGGCACCATCTTATCAGTACAAGTCACCCCCACCTCCATCACGGTCACCTCCACCACCTTACATTTACAAATCTCCACCACCTCCACCCTATGAGCACAAGTCTCCATCTTATGAATACAAGTCTCCTCCACCTCCTTCGCCATCACCCCCACCACCCTATGAGTATAAATCACCTCCACCACCATCTTATGAGCACAAGGCTCCAACATATGTGTACAAGTCACCGCCTCCTCCATCCCCATCACCTCCACCTCCTTATTATTACAAATCCCCCCCACCCCCCTCACCTTCCCCTCCACCACCTTACTATTACAAATCTCCACCACCACCATCTCCTTCACCTCCACCTCCATATTACTACAAGTCTCCCCCACCACCCTCACCCTCCCCACCCCCACCTTACTATTACAAATCCCCACCGCCGCCTTCACCATCTCCCCCACCACCCTACTACTATAAATCTCCCCCACCACCTTCACCATCTCCTCCACCACCATACTACTACAAATCACCCCCACCACCATATGAACACAAGACTAAACCGTACTATTACAAGTCCCCACCACCACCTTCACCATCTCCTCCACCACCATACTATTACAAGTCCCCGCCACCACCTTCACCATCTCCACCCCCACCATACTACTACAAATCACCTCCTCCTCCATCACCTATTCCCCATACACCTTACTACTACAAGTCCCCACCACCACCTAAGGTTCTTCCACCACCATACTATTACAACTCCCCTCCTCCACCTGTAGTGTATCATCCCTACCACCACGCATTGATCGTGAAGGTAGTGGGTAAAGTCTACAGCTTCAGGTGCTATGACTGGGAGTATCCTGAAAAGTCTCATAACAAGAAACACCTCAAAGGTACATCACGTTATATTTCTCAATCCTTTCATTTTTATAGATTTTGTGTACATCACAATTGGCTCGTAGTTTCTCACTACCGTTACGACTAAACTGCCAGTTTCAGTAATGAGATTCATATAGACAGGTTTTTATTAACATCTTTGTTTCTTAGAAGTTACACAAACACTTAATTTAGGTCTCTCCTTGTCCAATAAAAAAAACAATTGATATATCAAATTAACATATACGTATCATTTACCTCATTATAATTAAATAATCGTGCCTAATATAAAGATTCGTTTTGACAATGATAGTTTAGTGAGTTTCTTTATAATAACACTCTCCAATATCATGTGTTTTAGAAACAATTTTATTTTAAATTGTCTAAATTTAAATTTGTTATGGAACAGGTGCTGTTGTTGAAGTGACATGCAAAGCCGGAAGCAAAATCATCAAGGCTTACGGTAAAACTAAGATCAATGGAAAGTATGCCATCACAGTTAAGGACTTTGACTATATCAAATATGGTTCCACAGTGTGCAAGGCTGCCCTTTATGCTCCACCTAAGGGTTCACCCTTCAGCATACCTACAAAGCTAAACCAAGGAACAAAGTTGTACTTGAAATCCAAAGACAAGTACGAGGTTGTGCTCAAGGCCGAGCCATTTGCTTATGCTTCAAAGAAACATTTCAAAGAATGTGAGAAGCCCAAGCCTTCACCAACTCCTTACTACTACAAATCACCTCCACCTCCCTCACCAGTTTATAAGTACAACTCGCCACCTCCTCCCGTCCATTATTACTCACCTCCATATTACTACAAGTCACCGCCTCCCCCTGTGAAAGCGGCGCCAACTCCTTACTACTACAAATCGCCTCCACCTCCGTCTCCGGTTTACAAGTACAACTCCCCACCTCCACCGGTCCATTACTATTCACCTCCATATACCTATAAGTCACCTCCTCCTCCTGTGAAAACGGCACCAACTCCTTACTACTACAAATCACCTCCACCTCCCGCACCGGTTTACAAGTACAACTCACCACCTCCACCGGTCCATTATTATTCTCCTCCATACTACTACAAGTCACCACCCCTACCATCACCATCACCTCCTCCACCATACTATTACAAGTCCCCACCTCCACCATCACCATCCCCTCCTCCACCTTATTATTATAAATCTCCTCCTCCACCCAAGGAGATTGTACACCCTCCATACTACTATAAGTCACCACCCCCACCATCCCCATCACCTCCTCCACCATACTATTACAAGTCTCCACCACCACCATCACCATCTCCCCCACCACCTTATTATTATAAGTCACCACCCCCACCATCCCCATCCCCTCCTCCACCATACTACTATAAGTCCCCACCTCCACCTAAAGAAATATCACATCCTTCATATAACTATAAGTCACCACCCCCACCATCACCATCCCCTCCCCCTCCATACTATTACAAATCTCCTCCACCACCATCACCATCACCACCACCTCCCTACTATTACAAATCACCTCCACCACCATCCCCATCACCACCACCTCCATATTACTACAAAAGTCCCCCTCCACCGTCTCCATCTCCTCCACCCCCCTATTATTACAAATCTCCGCCACCACCATCACCATCTCCACCCCCTCCCTACTATTACAAATCACCTCCATCATCCTCACCATCACCCCCACCTCCGTACTATTACAAATCTCCCCCACCTCCATCTCCATCACCACCACCTCCTTATCACTATCAAACTCCTCCTCCACCATCTCCCATTTCTCATCCTCCCTACTACTACAAATCCCCTCCACCACCATCGCCATCTCCTCCACCTCCATACCATTACGTGAGTCCTCCTCCACCAGTAAAGTCAGCTTACATCTATGCTTCTCCACCACCACCGATCTACAACTAG

Protein sequence

>MS.gene95352.t1

MTPKASSPKRGHNWPPMAMALFIALISTSVVSAAANSYIYSSPPPPYVYKSPPPPSPSPPPPYEHKAPSYQYKSPPPPSRSPPPPYIYKSPPPPPYEHKSPSYEYKSPPPPSPSPPPPYEYKSPPPPSYEHKAPTYVYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPYEHKTKPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPIPHTPYYYKSPPPPKVLPPPYYYNSPPPPVVYHPYHHALIVKVVGKVYSFRCYDWEYPEKSHNKKHLKGAVVEVTCKAGSKIIKAYGKTKINGKYAITVKDFDYIKYGSTVCKAALYAPPKGSPFSIPTKLNQGTKLYLKSKDKYEVVLKAEPFAYASKKHFKECEKPKPSPTPYYYKSPPPPSPVYKYNSPPPPVHYYSPPYYYKSPPPPVKAAPTPYYYKSPPPPSPVYKYNSPPPPVHYYSPPYTYKSPPPPVKTAPTPYYYKSPPPPAPVYKYNSPPPPVHYYSPPYYYKSPPLPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPKEIVHPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPKEISHPSYNYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPSSSPSPPPPYYYKSPPPPSPSPPPPYHYQTPPPPSPISHPPYYYKSPPPPSPSPPPPYHYVSPPPPVKSAYIYASPPPPIYN