Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97237.t1 | XP_013467004.1 | 92.5 | 240 | 13 | 3 | 1 | 237 | 120 | 357 | 7.60E-112 | 413.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97237.t1 | A0A072VG82 | 92.5 | 240 | 13 | 3 | 1 | 237 | 120 | 357 | 5.5e-112 | 413.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene97237 | 0.808914 | 2.45E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene97237 | 0.803977 | 2.69E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene97237 | 0.825586 | 4.32E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene97237 | 0.832353 | 9.92E-56 | -1.69E-46 |
| MS.gene050386 | MS.gene97237 | 0.800988 | 1.11E-48 | -1.69E-46 |
| MS.gene050689 | MS.gene97237 | 0.812435 | 4.25E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene97237 | 0.808581 | 2.89E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene97237 | 0.802541 | 5.34E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene97237 | 0.802767 | 4.80E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene97237 | 0.81089 | 9.21E-51 | -1.69E-46 |
| MS.gene051746 | MS.gene97237 | 0.809615 | 1.73E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene97237 | 0.81664 | 4.98E-52 | -1.69E-46 |
| MS.gene054250 | MS.gene97237 | 0.819137 | 1.36E-52 | -1.69E-46 |
| MS.gene055162 | MS.gene97237 | 0.816449 | 5.50E-52 | -1.69E-46 |
| MS.gene055424 | MS.gene97237 | 0.818057 | 2.39E-52 | -1.69E-46 |
| MS.gene056580 | MS.gene97237 | 0.803415 | 3.52E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene97237 | 0.830982 | 2.16E-55 | -1.69E-46 |
| MS.gene057140 | MS.gene97237 | 0.80605 | 9.93E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene97237 | 0.861022 | 1.37E-63 | -1.69E-46 |
| MS.gene057287 | MS.gene97237 | 0.872291 | 3.56E-67 | -1.69E-46 |
| MS.gene057694 | MS.gene97237 | 0.819991 | 8.68E-53 | -1.69E-46 |
| MS.gene057705 | MS.gene97237 | 0.810701 | 1.01E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene97237 | 0.825814 | 3.82E-54 | -1.69E-46 |
| MS.gene058055 | MS.gene97237 | 0.853087 | 3.01E-61 | -1.69E-46 |
| MS.gene058074 | MS.gene97237 | 0.80348 | 3.42E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene97237 | 0.8003 | 1.54E-48 | -1.69E-46 |
| MS.gene058906 | MS.gene97237 | 0.823494 | 1.34E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene97237 | 0.823386 | 1.42E-53 | -1.69E-46 |
| MS.gene060917 | MS.gene97237 | 0.805584 | 1.24E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97237.t1 | MTR_1g041155 | 92.500 | 240 | 13 | 3 | 1 | 237 | 120 | 357 | 1.68e-156 | 438 |
| MS.gene97237.t1 | MTR_1g076500 | 63.333 | 240 | 78 | 5 | 1 | 230 | 142 | 381 | 7.26e-97 | 288 |
| MS.gene97237.t1 | MTR_7g095960 | 48.954 | 239 | 110 | 6 | 2 | 237 | 127 | 356 | 1.19e-70 | 220 |
| MS.gene97237.t1 | MTR_1g070970 | 50.211 | 237 | 91 | 6 | 2 | 235 | 136 | 348 | 5.91e-67 | 211 |
| MS.gene97237.t1 | MTR_8g093440 | 40.845 | 142 | 77 | 1 | 34 | 168 | 20 | 161 | 3.52e-38 | 132 |
| MS.gene97237.t1 | MTR_8g093440 | 40.845 | 142 | 77 | 1 | 34 | 168 | 82 | 223 | 1.05e-37 | 133 |
| MS.gene97237.t1 | MTR_7g083080 | 47.656 | 128 | 61 | 2 | 33 | 154 | 129 | 256 | 9.39e-37 | 132 |
| MS.gene97237.t1 | MTR_4g132963 | 44.915 | 118 | 65 | 0 | 36 | 153 | 117 | 234 | 1.75e-36 | 130 |
| MS.gene97237.t1 | MTR_4g132940 | 44.915 | 118 | 65 | 0 | 36 | 153 | 117 | 234 | 1.75e-36 | 130 |
| MS.gene97237.t1 | MTR_4g132970 | 39.850 | 133 | 80 | 0 | 36 | 168 | 138 | 270 | 5.25e-36 | 129 |
| MS.gene97237.t1 | MTR_2g025520 | 43.478 | 138 | 74 | 1 | 42 | 179 | 142 | 275 | 8.36e-35 | 126 |
| MS.gene97237.t1 | MTR_2g013780 | 40.625 | 128 | 70 | 2 | 34 | 155 | 143 | 270 | 9.88e-34 | 124 |
| MS.gene97237.t1 | MTR_4g078310 | 39.683 | 126 | 67 | 2 | 34 | 151 | 119 | 243 | 1.23e-31 | 117 |
| MS.gene97237.t1 | MTR_4g088770 | 37.795 | 127 | 73 | 2 | 34 | 154 | 149 | 275 | 2.58e-31 | 117 |
| MS.gene97237.t1 | MTR_4g088760 | 37.795 | 127 | 73 | 2 | 34 | 154 | 202 | 328 | 7.34e-31 | 117 |
| MS.gene97237.t1 | MTR_2g013880 | 29.560 | 159 | 106 | 2 | 7 | 159 | 116 | 274 | 6.11e-28 | 108 |
| MS.gene97237.t1 | MTR_7g053310 | 35.714 | 140 | 78 | 3 | 22 | 155 | 114 | 247 | 4.56e-27 | 105 |
| MS.gene97237.t1 | MTR_8g012240 | 33.766 | 154 | 89 | 3 | 27 | 173 | 130 | 277 | 1.91e-26 | 104 |
| MS.gene97237.t1 | MTR_5g008720 | 34.677 | 124 | 75 | 1 | 34 | 151 | 97 | 220 | 1.58e-24 | 98.2 |
| MS.gene97237.t1 | MTR_1g103610 | 71.795 | 39 | 11 | 0 | 136 | 174 | 1 | 39 | 8.61e-14 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97237.t1 | AT3G22970 | 51.200 | 250 | 94 | 5 | 1 | 237 | 25 | 259 | 4.85e-76 | 231 |
| MS.gene97237.t1 | AT4G14620 | 53.782 | 238 | 96 | 4 | 2 | 235 | 112 | 339 | 3.25e-75 | 231 |
| MS.gene97237.t1 | AT3G22970 | 51.406 | 249 | 93 | 5 | 2 | 237 | 137 | 370 | 2.61e-74 | 230 |
| MS.gene97237.t1 | AT2G38820 | 48.691 | 191 | 87 | 3 | 1 | 187 | 126 | 309 | 6.52e-62 | 196 |
| MS.gene97237.t1 | AT3G54550 | 45.860 | 157 | 77 | 3 | 1 | 153 | 115 | 267 | 6.44e-47 | 157 |
| MS.gene97237.t1 | AT3G07350 | 37.748 | 151 | 82 | 2 | 27 | 171 | 134 | 278 | 7.97e-35 | 126 |
| MS.gene97237.t1 | AT2G39650 | 43.902 | 123 | 63 | 1 | 38 | 154 | 52 | 174 | 1.21e-33 | 121 |
| MS.gene97237.t1 | AT2G39650 | 43.902 | 123 | 63 | 1 | 38 | 154 | 114 | 236 | 4.07e-33 | 121 |
| MS.gene97237.t1 | AT3G25240 | 40.523 | 153 | 82 | 3 | 11 | 154 | 90 | 242 | 2.83e-32 | 119 |
| MS.gene97237.t1 | AT4G32480 | 39.516 | 124 | 69 | 2 | 38 | 155 | 120 | 243 | 7.45e-29 | 110 |
| MS.gene97237.t1 | AT2G20670 | 39.474 | 114 | 63 | 1 | 46 | 153 | 130 | 243 | 1.51e-27 | 107 |
| MS.gene97237.t1 | AT1G62420 | 38.261 | 115 | 68 | 1 | 42 | 153 | 116 | 230 | 1.72e-27 | 106 |
| MS.gene97237.t1 | AT1G77145 | 35.000 | 140 | 73 | 2 | 31 | 152 | 72 | 211 | 1.75e-26 | 103 |
| MS.gene97237.t1 | AT1G12030 | 38.938 | 113 | 68 | 1 | 42 | 153 | 118 | 230 | 2.27e-26 | 103 |
| MS.gene97237.t1 | AT1G77160 | 34.247 | 146 | 78 | 2 | 31 | 158 | 22 | 167 | 3.31e-26 | 101 |
| MS.gene97237.t1 | AT1G77160 | 34.247 | 146 | 78 | 2 | 31 | 158 | 77 | 222 | 6.13e-26 | 102 |
| MS.gene97237.t1 | AT1G77145 | 39.583 | 96 | 48 | 1 | 67 | 152 | 59 | 154 | 6.34e-21 | 87.4 |
| MS.gene97237.t1 | AT2G38820 | 48.438 | 64 | 33 | 0 | 2 | 65 | 127 | 190 | 3.03e-13 | 67.0 |
Find 52 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCCATTTGCAGATCAAAA+TGG | 0.248714 | 1.3:-23972063 | MS.gene97237:CDS |
| GCCGCATCGGAGACTTGCTT+TGG | 0.348894 | 1.3:+23971651 | None:intergenic |
| AAGAAAAGAAGATTTGATTA+AGG | 0.362890 | 1.3:-23972122 | MS.gene97237:CDS |
| TCGGAGGTGGATAGTGATTC+TGG | 0.369464 | 1.3:-23971609 | MS.gene97237:CDS |
| GAGTCCAGCGTGGCAGTTAC+CGG | 0.378357 | 1.3:-23971508 | MS.gene97237:CDS |
| GCTGAAAAGCTTCAATCTCT+TGG | 0.409442 | 1.3:-23972094 | MS.gene97237:CDS |
| ATTCCTCTTTCACCACTCTT+CGG | 0.422133 | 1.3:+23971477 | None:intergenic |
| TGCTTTGGCCTAGCTGCCGC+CGG | 0.433998 | 1.3:+23971666 | None:intergenic |
| AGTCTCCGATGCGGCGGCGG+TGG | 0.440423 | 1.3:-23971643 | MS.gene97237:CDS |
| ATCCATTTGCAGATCAAAAT+GGG | 0.441823 | 1.3:-23972062 | MS.gene97237:CDS |
| GGATAGTGATTCTGGTGAAT+TGG | 0.451879 | 1.3:-23971601 | MS.gene97237:CDS |
| AAAACAAATTCTTGTCCTGC+TGG | 0.468712 | 1.3:-23972037 | MS.gene97237:intron |
| CCACTCTTCGGTTTCACCGC+CGG | 0.488504 | 1.3:+23971489 | None:intergenic |
| GCAAGTCTCCGATGCGGCGG+CGG | 0.496129 | 1.3:-23971646 | MS.gene97237:CDS |
| GAGTGGTGAAAGAGGAATGA+AGG | 0.505285 | 1.3:-23971472 | MS.gene97237:CDS |
| TGGATTAGCTTCTTTGCTGA+AGG | 0.511501 | 1.3:-23971445 | MS.gene97237:CDS |
| GGAGAAAGCTTCGCCGGAGG+AGG | 0.512134 | 1.3:-23971562 | MS.gene97237:CDS |
| TTCGCCGGAGGAGGTAGTTA+CGG | 0.512281 | 1.3:-23971553 | MS.gene97237:CDS |
| AAGCAGAGTTTGAAGAAGAA+AGG | 0.517627 | 1.3:-23971744 | MS.gene97237:CDS |
| ACCGCCGGTAACTGCCACGC+TGG | 0.521213 | 1.3:+23971504 | None:intergenic |
| GGATCTCTCCGGCGGCAGCT+AGG | 0.528128 | 1.3:-23971674 | MS.gene97237:CDS |
| TGTTTCCACCGCCGCCGCAT+CGG | 0.530760 | 1.3:+23971638 | None:intergenic |
| GGAAACAGTTTCATCGGAGG+TGG | 0.532775 | 1.3:-23971622 | MS.gene97237:CDS |
| CGTCACCGTCATGTCGGAGG+CGG | 0.549114 | 1.3:-23971769 | MS.gene97237:CDS |
| TCAATTCATTGATGCGATTG+TGG | 0.553988 | 1.3:-23971925 | MS.gene97237:CDS |
| TGGTGAGGAGAAAGCTTCGC+CGG | 0.554242 | 1.3:-23971568 | MS.gene97237:CDS |
| AAACCGAAGAGTGGTGAAAG+AGG | 0.554832 | 1.3:-23971480 | MS.gene97237:CDS |
| GAAAGAGGAATGAAGGTGAC+TGG | 0.556629 | 1.3:-23971465 | MS.gene97237:CDS |
| GGCGGTGGAAACAGTTTCAT+CGG | 0.562645 | 1.3:-23971628 | MS.gene97237:CDS |
| CGTTCTTCAACACTTACACA+AGG | 0.565445 | 1.3:+23972199 | None:intergenic |
| CTTGTGTAAGTGTTGAAGAA+CGG | 0.570166 | 1.3:-23972198 | MS.gene97237:CDS |
| ATGTAATCGCGCTTCCTCCA+CGG | 0.582747 | 1.3:+23971708 | None:intergenic |
| CTTCGCCGCCTCCGACATGA+CGG | 0.584516 | 1.3:+23971764 | None:intergenic |
| TTCATTGATGCGATTGTGGA+AGG | 0.586622 | 1.3:-23971921 | MS.gene97237:CDS |
| GCCGCCGTAACTACCTCCTC+CGG | 0.598847 | 1.3:+23971549 | None:intergenic |
| GTTAGCGAAGTGGATCTCTC+CGG | 0.616423 | 1.3:-23971685 | MS.gene97237:CDS |
| AAAGCAAGTCTCCGATGCGG+CGG | 0.623703 | 1.3:-23971649 | MS.gene97237:CDS |
| GAATGCATGTTCCGCCGTGG+AGG | 0.625206 | 1.3:-23971722 | MS.gene97237:CDS |
| GCAGATCGTCACCGTCATGT+CGG | 0.626575 | 1.3:-23971775 | MS.gene97237:CDS |
| GCGATTACATGTTAGCGAAG+TGG | 0.650775 | 1.3:-23971695 | MS.gene97237:CDS |
| GATCGTCACCGTCATGTCGG+AGG | 0.651203 | 1.3:-23971772 | MS.gene97237:CDS |
| TCCAGCGTGGCAGTTACCGG+CGG | 0.657779 | 1.3:-23971505 | MS.gene97237:CDS |
| AGCGAAGTGGATCTCTCCGG+CGG | 0.660131 | 1.3:-23971682 | MS.gene97237:CDS |
| CCGGCGGTGAAACCGAAGAG+TGG | 0.661349 | 1.3:-23971489 | MS.gene97237:CDS |
| AAGGAATGCATGTTCCGCCG+TGG | 0.669326 | 1.3:-23971725 | MS.gene97237:CDS |
| GGCGGCGACAGCGACAGCGA+CGG | 0.672784 | 1.3:-23971532 | MS.gene97237:CDS |
| GCCGGAGGAGGTAGTTACGG+CGG | 0.688861 | 1.3:-23971550 | MS.gene97237:CDS |
| GGTGGAAACAGTTTCATCGG+AGG | 0.697111 | 1.3:-23971625 | MS.gene97237:CDS |
| TGAGGAGAAAGCTTCGCCGG+AGG | 0.709522 | 1.3:-23971565 | MS.gene97237:CDS |
| GCCAAAGCAAGTCTCCGATG+CGG | 0.718766 | 1.3:-23971652 | MS.gene97237:CDS |
| CAGCGACGGTGAGTCCAGCG+TGG | 0.734694 | 1.3:-23971518 | MS.gene97237:CDS |
| TAATCGCGCTTCCTCCACGG+CGG | 0.770748 | 1.3:+23971711 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAGAAGATTTGATTA+AGG | - | chr1.3:23971520-23971539 | MS.gene97237:CDS | 20.0% |
| !!! | ATCGTTTTTTGTTTTGTTTT+AGG | - | chr1.3:23971688-23971707 | MS.gene97237:CDS | 20.0% |
| !!! | TATTGATATCGATTTTCGAT+CGG | - | chr1.3:23971756-23971775 | MS.gene97237:CDS | 25.0% |
| ATCCATTTGCAGATCAAAAT+GGG | - | chr1.3:23971580-23971599 | MS.gene97237:CDS | 30.0% | |
| TTAGAGAATTAATTACCAGC+AGG | + | chr1.3:23971623-23971642 | None:intergenic | 30.0% | |
| ! | TTTTTCCCGACGAAAATATA+CGG | + | chr1.3:23971835-23971854 | None:intergenic | 30.0% |
| AAAACAAATTCTTGTCCTGC+TGG | - | chr1.3:23971605-23971624 | MS.gene97237:CDS | 35.0% | |
| AAGCAGAGTTTGAAGAAGAA+AGG | - | chr1.3:23971898-23971917 | MS.gene97237:CDS | 35.0% | |
| CATCCATTTGCAGATCAAAA+TGG | - | chr1.3:23971579-23971598 | MS.gene97237:CDS | 35.0% | |
| TCAATTCATTGATGCGATTG+TGG | - | chr1.3:23971717-23971736 | MS.gene97237:CDS | 35.0% | |
| ! | GTATATTTTCGTCGGGAAAA+AGG | - | chr1.3:23971834-23971853 | MS.gene97237:CDS | 35.0% |
| !! | CTTGTGTAAGTGTTGAAGAA+CGG | - | chr1.3:23971444-23971463 | MS.gene97237:CDS | 35.0% |
| ATTCCTCTTTCACCACTCTT+CGG | + | chr1.3:23972168-23972187 | None:intergenic | 40.0% | |
| CGTTCTTCAACACTTACACA+AGG | + | chr1.3:23971446-23971465 | None:intergenic | 40.0% | |
| GCTGAAAAGCTTCAATCTCT+TGG | - | chr1.3:23971548-23971567 | MS.gene97237:CDS | 40.0% | |
| GGATAGTGATTCTGGTGAAT+TGG | - | chr1.3:23972041-23972060 | MS.gene97237:CDS | 40.0% | |
| TTCATTGATGCGATTGTGGA+AGG | - | chr1.3:23971721-23971740 | MS.gene97237:CDS | 40.0% | |
| ! | TCGCTTCCGTATATTTTCGT+CGG | - | chr1.3:23971826-23971845 | MS.gene97237:CDS | 40.0% |
| !! | CTCCCATTTTGATCTGCAAA+TGG | + | chr1.3:23971585-23971604 | None:intergenic | 40.0% |
| !! | GGTGAATTGGAGCTGATTTT+TGG | - | chr1.3:23972054-23972073 | MS.gene97237:CDS | 40.0% |
| !! | TGGATTAGCTTCTTTGCTGA+AGG | - | chr1.3:23972197-23972216 | MS.gene97237:CDS | 40.0% |
| !!! | ATTGGAGCTGATTTTTGGTG+AGG | - | chr1.3:23972059-23972078 | MS.gene97237:CDS | 40.0% |
| AAACCGAAGAGTGGTGAAAG+AGG | - | chr1.3:23972162-23972181 | MS.gene97237:CDS | 45.0% | |
| GAAAGAGGAATGAAGGTGAC+TGG | - | chr1.3:23972177-23972196 | MS.gene97237:CDS | 45.0% | |
| GAGTGGTGAAAGAGGAATGA+AGG | - | chr1.3:23972170-23972189 | MS.gene97237:CDS | 45.0% | |
| GCGATTACATGTTAGCGAAG+TGG | - | chr1.3:23971947-23971966 | MS.gene97237:intron | 45.0% | |
| ! | CGCTTCCGTATATTTTCGTC+GGG | - | chr1.3:23971827-23971846 | MS.gene97237:CDS | 45.0% |
| ! | TTTTCGTCGGGAAAAAGGAG+CGG | - | chr1.3:23971839-23971858 | MS.gene97237:CDS | 45.0% |
| ATGTAATCGCGCTTCCTCCA+CGG | + | chr1.3:23971937-23971956 | None:intergenic | 50.0% | |
| GGAAACAGTTTCATCGGAGG+TGG | - | chr1.3:23972020-23972039 | MS.gene97237:intron | 50.0% | |
| GGCGGTGGAAACAGTTTCAT+CGG | - | chr1.3:23972014-23972033 | MS.gene97237:intron | 50.0% | |
| GGTGGAAACAGTTTCATCGG+AGG | - | chr1.3:23972017-23972036 | MS.gene97237:intron | 50.0% | |
| GTTAGCGAAGTGGATCTCTC+CGG | - | chr1.3:23971957-23971976 | MS.gene97237:intron | 50.0% | |
| TCGGAGGTGGATAGTGATTC+TGG | - | chr1.3:23972033-23972052 | MS.gene97237:intron | 50.0% | |
| AAAGCAAGTCTCCGATGCGG+CGG | - | chr1.3:23971993-23972012 | MS.gene97237:intron | 55.0% | |
| AAGGAATGCATGTTCCGCCG+TGG | - | chr1.3:23971917-23971936 | MS.gene97237:CDS | 55.0% | |
| GCAGATCGTCACCGTCATGT+CGG | - | chr1.3:23971867-23971886 | MS.gene97237:CDS | 55.0% | |
| GCCAAAGCAAGTCTCCGATG+CGG | - | chr1.3:23971990-23972009 | MS.gene97237:intron | 55.0% | |
| TGGTGAGGAGAAAGCTTCGC+CGG | - | chr1.3:23972074-23972093 | MS.gene97237:CDS | 55.0% | |
| TTCGCCGGAGGAGGTAGTTA+CGG | - | chr1.3:23972089-23972108 | MS.gene97237:CDS | 55.0% | |
| AGCGAAGTGGATCTCTCCGG+CGG | - | chr1.3:23971960-23971979 | MS.gene97237:intron | 60.0% | |
| CCACTCTTCGGTTTCACCGC+CGG | + | chr1.3:23972156-23972175 | None:intergenic | 60.0% | |
| GAATGCATGTTCCGCCGTGG+AGG | - | chr1.3:23971920-23971939 | MS.gene97237:CDS | 60.0% | |
| GAGTCCAGCGTGGCAGTTAC+CGG | - | chr1.3:23972134-23972153 | MS.gene97237:CDS | 60.0% | |
| GATCGTCACCGTCATGTCGG+AGG | - | chr1.3:23971870-23971889 | MS.gene97237:CDS | 60.0% | |
| TAATCGCGCTTCCTCCACGG+CGG | + | chr1.3:23971934-23971953 | None:intergenic | 60.0% | |
| TGAGGAGAAAGCTTCGCCGG+AGG | - | chr1.3:23972077-23972096 | MS.gene97237:CDS | 60.0% | |
| ! | GCCGCATCGGAGACTTGCTT+TGG | + | chr1.3:23971994-23972013 | None:intergenic | 60.0% |
| CCGGCGGTGAAACCGAAGAG+TGG | - | chr1.3:23972153-23972172 | MS.gene97237:CDS | 65.0% | |
| CGTCACCGTCATGTCGGAGG+CGG | - | chr1.3:23971873-23971892 | MS.gene97237:CDS | 65.0% | |
| CTTCGCCGCCTCCGACATGA+CGG | + | chr1.3:23971881-23971900 | None:intergenic | 65.0% | |
| GCCGCCGTAACTACCTCCTC+CGG | + | chr1.3:23972096-23972115 | None:intergenic | 65.0% | |
| GCCGGAGGAGGTAGTTACGG+CGG | - | chr1.3:23972092-23972111 | MS.gene97237:CDS | 65.0% | |
| GGAGAAAGCTTCGCCGGAGG+AGG | - | chr1.3:23972080-23972099 | MS.gene97237:CDS | 65.0% | |
| TCCAGCGTGGCAGTTACCGG+CGG | - | chr1.3:23972137-23972156 | MS.gene97237:CDS | 65.0% | |
| TGCTTTGGCCTAGCTGCCGC+CGG | + | chr1.3:23971979-23971998 | None:intergenic | 65.0% | |
| TGTTTCCACCGCCGCCGCAT+CGG | + | chr1.3:23972007-23972026 | None:intergenic | 65.0% | |
| ACCGCCGGTAACTGCCACGC+TGG | + | chr1.3:23972141-23972160 | None:intergenic | 70.0% | |
| CAGCGACGGTGAGTCCAGCG+TGG | - | chr1.3:23972124-23972143 | MS.gene97237:CDS | 70.0% | |
| GCAAGTCTCCGATGCGGCGG+CGG | - | chr1.3:23971996-23972015 | MS.gene97237:intron | 70.0% | |
| GGATCTCTCCGGCGGCAGCT+AGG | - | chr1.3:23971968-23971987 | MS.gene97237:intron | 70.0% | |
| AGTCTCCGATGCGGCGGCGG+TGG | - | chr1.3:23971999-23972018 | MS.gene97237:intron | 75.0% | |
| GGCGGCGACAGCGACAGCGA+CGG | - | chr1.3:23972110-23972129 | MS.gene97237:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 23971434 | 23972230 | 23971434 | ID=MS.gene97237 |
| chr1.3 | mRNA | 23971434 | 23972230 | 23971434 | ID=MS.gene97237.t1;Parent=MS.gene97237 |
| chr1.3 | exon | 23972038 | 23972230 | 23972038 | ID=MS.gene97237.t1.exon1;Parent=MS.gene97237.t1 |
| chr1.3 | CDS | 23972038 | 23972230 | 23972038 | ID=cds.MS.gene97237.t1;Parent=MS.gene97237.t1 |
| chr1.3 | exon | 23971434 | 23971954 | 23971434 | ID=MS.gene97237.t1.exon2;Parent=MS.gene97237.t1 |
| chr1.3 | CDS | 23971434 | 23971954 | 23971434 | ID=cds.MS.gene97237.t1;Parent=MS.gene97237.t1 |
| Gene Sequence |
| Protein sequence |
