AlfalfaGEDB | MS.gene97237

M. sativa cultivar XinJiangDaYe / MS.gene97237

KEGG: -
GO: -
PFAM: PF04720.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97237.t1	XP_013467004.1	92.5	240	13	3	1	237	120	357	7.60E-112	413.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97237.t1	A0A072VG82	92.5	240	13	3	1	237	120	357	5.5e-112	413.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene97237	0.808914	2.45E-50	-1.69E-46
MS.gene049580	MS.gene97237	0.803977	2.69E-49	-1.69E-46
MS.gene049808	MS.gene97237	0.825586	4.32E-54	-1.69E-46
MS.gene050277	MS.gene97237	0.832353	9.92E-56	-1.69E-46
MS.gene050386	MS.gene97237	0.800988	1.11E-48	-1.69E-46
MS.gene050689	MS.gene97237	0.812435	4.25E-51	-1.69E-46
MS.gene050838	MS.gene97237	0.808581	2.89E-50	-1.69E-46
MS.gene051243	MS.gene97237	0.802541	5.34E-49	-1.69E-46
MS.gene051245	MS.gene97237	0.802767	4.80E-49	-1.69E-46
MS.gene051328	MS.gene97237	0.81089	9.21E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97237.t1	MTR_1g041155	92.500	240	13	3	1	237	120	357	1.68e-156	438
MS.gene97237.t1	MTR_1g076500	63.333	240	78	5	1	230	142	381	7.26e-97	288
MS.gene97237.t1	MTR_7g095960	48.954	239	110	6	2	237	127	356	1.19e-70	220
MS.gene97237.t1	MTR_1g070970	50.211	237	91	6	2	235	136	348	5.91e-67	211
MS.gene97237.t1	MTR_8g093440	40.845	142	77	1	34	168	20	161	3.52e-38	132
MS.gene97237.t1	MTR_8g093440	40.845	142	77	1	34	168	82	223	1.05e-37	133
MS.gene97237.t1	MTR_7g083080	47.656	128	61	2	33	154	129	256	9.39e-37	132
MS.gene97237.t1	MTR_4g132963	44.915	118	65	0	36	153	117	234	1.75e-36	130
MS.gene97237.t1	MTR_4g132940	44.915	118	65	0	36	153	117	234	1.75e-36	130
MS.gene97237.t1	MTR_4g132970	39.850	133	80	0	36	168	138	270	5.25e-36	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97237.t1	AT3G22970	51.200	250	94	5	1	237	25	259	4.85e-76	231
MS.gene97237.t1	AT4G14620	53.782	238	96	4	2	235	112	339	3.25e-75	231
MS.gene97237.t1	AT3G22970	51.406	249	93	5	2	237	137	370	2.61e-74	230
MS.gene97237.t1	AT2G38820	48.691	191	87	3	1	187	126	309	6.52e-62	196
MS.gene97237.t1	AT3G54550	45.860	157	77	3	1	153	115	267	6.44e-47	157
MS.gene97237.t1	AT3G07350	37.748	151	82	2	27	171	134	278	7.97e-35	126
MS.gene97237.t1	AT2G39650	43.902	123	63	1	38	154	52	174	1.21e-33	121
MS.gene97237.t1	AT2G39650	43.902	123	63	1	38	154	114	236	4.07e-33	121
MS.gene97237.t1	AT3G25240	40.523	153	82	3	11	154	90	242	2.83e-32	119
MS.gene97237.t1	AT4G32480	39.516	124	69	2	38	155	120	243	7.45e-29	110

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Find 52 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAATTCTTGTCCTGC+TGG	0.468712	1.3:-23972037	MS.gene97237:intron
AAACCGAAGAGTGGTGAAAG+AGG	0.554832	1.3:-23971480	MS.gene97237:CDS
AAAGCAAGTCTCCGATGCGG+CGG	0.623703	1.3:-23971649	MS.gene97237:CDS
AAGAAAAGAAGATTTGATTA+AGG	0.362890	1.3:-23972122	MS.gene97237:CDS
AAGCAGAGTTTGAAGAAGAA+AGG	0.517627	1.3:-23971744	MS.gene97237:CDS
AAGGAATGCATGTTCCGCCG+TGG	0.669326	1.3:-23971725	MS.gene97237:CDS
ACCGCCGGTAACTGCCACGC+TGG	0.521213	1.3:+23971504	None:intergenic
AGCGAAGTGGATCTCTCCGG+CGG	0.660131	1.3:-23971682	MS.gene97237:CDS
AGTCTCCGATGCGGCGGCGG+TGG	0.440423	1.3:-23971643	MS.gene97237:CDS
ATCCATTTGCAGATCAAAAT+GGG	0.441823	1.3:-23972062	MS.gene97237:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCCATTTGCAGATCAAAAT+GGG	-	chr1.3:23971580-23971599	MS.gene97237:CDS	30.0%
TTAGAGAATTAATTACCAGC+AGG	+	chr1.3:23971623-23971642	None:intergenic	30.0%
AAAACAAATTCTTGTCCTGC+TGG	-	chr1.3:23971605-23971624	MS.gene97237:CDS	35.0%
AAGCAGAGTTTGAAGAAGAA+AGG	-	chr1.3:23971898-23971917	MS.gene97237:CDS	35.0%
CATCCATTTGCAGATCAAAA+TGG	-	chr1.3:23971579-23971598	MS.gene97237:CDS	35.0%
TCAATTCATTGATGCGATTG+TGG	-	chr1.3:23971717-23971736	MS.gene97237:CDS	35.0%
ATTCCTCTTTCACCACTCTT+CGG	+	chr1.3:23972168-23972187	None:intergenic	40.0%
CGTTCTTCAACACTTACACA+AGG	+	chr1.3:23971446-23971465	None:intergenic	40.0%
GCTGAAAAGCTTCAATCTCT+TGG	-	chr1.3:23971548-23971567	MS.gene97237:CDS	40.0%
GGATAGTGATTCTGGTGAAT+TGG	-	chr1.3:23972041-23972060	MS.gene97237:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	23971434	23972230	23971434	ID=MS.gene97237
chr1.3	mRNA	23971434	23972230	23971434	ID=MS.gene97237.t1;Parent=MS.gene97237
chr1.3	exon	23972038	23972230	23972038	ID=MS.gene97237.t1.exon1;Parent=MS.gene97237.t1
chr1.3	CDS	23972038	23972230	23972038	ID=cds.MS.gene97237.t1;Parent=MS.gene97237.t1
chr1.3	exon	23971434	23971954	23971434	ID=MS.gene97237.t1.exon2;Parent=MS.gene97237.t1
chr1.3	CDS	23971434	23971954	23971434	ID=cds.MS.gene97237.t1;Parent=MS.gene97237.t1

Gene Sequence

>MS.gene97237

AATTTGATTCCTTGTGTAAGTGTTGAAGAACGGAATTTACTAGCAGATGCAACGAAAATTGTTGAGAAGAATAGCAAAATTTACAAAAGAAAAGAAGATTTGATTAAGGTCGTTGCTGAAAAGCTTCAATCTCTTGGTTACGATTCATCCATTTGCAGATCAAAATGGGAGAAAACAAATTCTTGTCCTGCTGGTAATTAATTCTCTAATCAGATTCAAAATTCAAAATTGAGTTAACTCAACTCGTTTTCTGAATCGTTTTTTGTTTTGTTTTAGGTGATTATCAATTCATTGATGCGATTGTGGAAGGTGAAACGTTGATTATTGATATCGATTTTCGATCGGAGTTTGAAATCGCGAGATCTACAAGTCAGTATAAGACGATTCTTCAATCGCTTCCGTATATTTTCGTCGGGAAAAAGGAGCGGTTGAAGCAGATCGTCACCGTCATGTCGGAGGCGGCGAAGCAGAGTTTGAAGAAGAAAGGAATGCATGTTCCGCCGTGGAGGAAGCGCGATTACATGTTAGCGAAGTGGATCTCTCCGGCGGCAGCTAGGCCAAAGCAAGTCTCCGATGCGGCGGCGGTGGAAACAGTTTCATCGGAGGTGGATAGTGATTCTGGTGAATTGGAGCTGATTTTTGGTGAGGAGAAAGCTTCGCCGGAGGAGGTAGTTACGGCGGCGACAGCGACAGCGACGGTGAGTCCAGCGTGGCAGTTACCGGCGGTGAAACCGAAGAGTGGTGAAAGAGGAATGAAGGTGACTGGATTAGCTTCTTTGCTGAAGGAGAAACCATAG

Protein sequence

>MS.gene97237.t1

NLIPCVSVEERNLLADATKIVEKNSKIYKRKEDLIKVVAEKLQSLGYDSSICRSKWEKTNSCPAGDYQFIDAIVEGETLIIDIDFRSEFEIARSTSQYKTILQSLPYIFVGKKERLKQIVTVMSEAAKQSLKKKGMHVPPWRKRDYMLAKWISPAAARPKQVSDAAAVETVSSEVDSDSGELELIFGEEKASPEEVVTAATATATVSPAWQLPAVKPKSGERGMKVTGLASLLKEKP