Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98959.t1 | XP_013466557.1 | 97.1 | 209 | 6 | 0 | 1 | 209 | 1 | 209 | 7.10E-114 | 419.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98959.t1 | Q9CAB8 | 63.2 | 182 | 67 | 0 | 24 | 205 | 9 | 190 | 5.4e-62 | 238.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98959.t1 | B7FI43 | 97.1 | 209 | 6 | 0 | 1 | 209 | 1 | 209 | 5.2e-114 | 419.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050605 | MS.gene98959 | 0.809224 | 2.10E-50 | -1.69E-46 |
| MS.gene050680 | MS.gene98959 | 0.824908 | 6.26E-54 | -1.69E-46 |
| MS.gene050750 | MS.gene98959 | 0.824984 | 6.00E-54 | -1.69E-46 |
| MS.gene050953 | MS.gene98959 | 0.839974 | 1.15E-57 | -1.69E-46 |
| MS.gene051368 | MS.gene98959 | 0.840129 | 1.05E-57 | -1.69E-46 |
| MS.gene051370 | MS.gene98959 | 0.836822 | 7.47E-57 | -1.69E-46 |
| MS.gene051373 | MS.gene98959 | 0.822111 | 2.82E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene98959 | 0.800558 | 1.36E-48 | -1.69E-46 |
| MS.gene052176 | MS.gene98959 | 0.839385 | 1.64E-57 | -1.69E-46 |
| MS.gene052333 | MS.gene98959 | 0.863886 | 1.81E-64 | -1.69E-46 |
| MS.gene052389 | MS.gene98959 | 0.801056 | 1.08E-48 | -1.69E-46 |
| MS.gene052426 | MS.gene98959 | 0.802203 | 6.27E-49 | -1.69E-46 |
| MS.gene052500 | MS.gene98959 | 0.803722 | 3.04E-49 | -1.69E-46 |
| MS.gene052502 | MS.gene98959 | 0.805901 | 1.07E-49 | -1.69E-46 |
| MS.gene052586 | MS.gene98959 | 0.814812 | 1.27E-51 | -1.69E-46 |
| MS.gene052826 | MS.gene98959 | 0.802695 | 4.97E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene98959 | 0.812424 | 4.27E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene98959 | 0.807724 | 4.39E-50 | -1.69E-46 |
| MS.gene054093 | MS.gene98959 | 0.80352 | 3.35E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene98959 | 0.834033 | 3.79E-56 | -1.69E-46 |
| MS.gene054930 | MS.gene98959 | 0.807142 | 5.84E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene98959 | 0.828936 | 6.81E-55 | -1.69E-46 |
| MS.gene055225 | MS.gene98959 | 0.80599 | 1.02E-49 | -1.69E-46 |
| MS.gene055367 | MS.gene98959 | 0.848862 | 4.68E-60 | -1.69E-46 |
| MS.gene055701 | MS.gene98959 | 0.859687 | 3.48E-63 | -1.69E-46 |
| MS.gene056506 | MS.gene98959 | 0.845955 | 2.94E-59 | -1.69E-46 |
| MS.gene057156 | MS.gene98959 | -0.805831 | 1.10E-49 | -1.69E-46 |
| MS.gene057194 | MS.gene98959 | 0.80687 | 6.67E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene98959 | 0.801575 | 8.44E-49 | -1.69E-46 |
| MS.gene058146 | MS.gene98959 | 0.807586 | 4.70E-50 | -1.69E-46 |
| MS.gene059710 | MS.gene98959 | 0.803144 | 4.01E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene98959 | 0.829066 | 6.34E-55 | -1.69E-46 |
| MS.gene060246 | MS.gene98959 | 0.824157 | 9.40E-54 | -1.69E-46 |
| MS.gene060879 | MS.gene98959 | 0.818404 | 2.00E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene98959 | -0.826278 | 2.96E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98959.t1 | MTR_1g032160 | 97.129 | 209 | 6 | 0 | 1 | 209 | 1 | 209 | 1.70e-153 | 424 |
| MS.gene98959.t1 | MTR_1g032190 | 61.463 | 205 | 67 | 1 | 1 | 205 | 1 | 193 | 1.34e-89 | 261 |
| MS.gene98959.t1 | MTR_1g032190 | 61.463 | 205 | 67 | 1 | 1 | 205 | 33 | 225 | 3.38e-89 | 262 |
| MS.gene98959.t1 | MTR_1g073640 | 49.708 | 171 | 86 | 0 | 30 | 200 | 59 | 229 | 1.60e-57 | 182 |
| MS.gene98959.t1 | MTR_7g115490 | 48.538 | 171 | 88 | 0 | 30 | 200 | 61 | 231 | 2.26e-55 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98959.t1 | AT1G70680 | 63.187 | 182 | 67 | 0 | 24 | 205 | 9 | 190 | 1.41e-81 | 241 |
| MS.gene98959.t1 | AT1G70670 | 59.890 | 182 | 73 | 0 | 26 | 207 | 10 | 191 | 2.16e-79 | 236 |
| MS.gene98959.t1 | AT1G23240 | 57.485 | 167 | 71 | 0 | 33 | 199 | 2 | 168 | 3.13e-69 | 209 |
| MS.gene98959.t1 | AT1G23240 | 57.485 | 167 | 71 | 0 | 33 | 199 | 28 | 194 | 4.03e-69 | 210 |
| MS.gene98959.t1 | AT1G23240 | 57.485 | 167 | 71 | 0 | 33 | 199 | 37 | 203 | 5.14e-69 | 210 |
| MS.gene98959.t1 | AT1G70680 | 62.500 | 152 | 57 | 0 | 54 | 205 | 5 | 156 | 2.68e-64 | 196 |
| MS.gene98959.t1 | AT4G26740 | 46.591 | 176 | 90 | 1 | 29 | 200 | 57 | 232 | 1.15e-54 | 174 |
| MS.gene98959.t1 | AT5G55240 | 45.455 | 187 | 98 | 1 | 22 | 204 | 49 | 235 | 3.28e-54 | 173 |
| MS.gene98959.t1 | AT2G33380 | 45.562 | 169 | 92 | 0 | 33 | 201 | 60 | 228 | 6.99e-52 | 167 |
| MS.gene98959.t1 | AT1G23240 | 59.055 | 127 | 52 | 0 | 33 | 159 | 37 | 163 | 8.06e-52 | 165 |
| MS.gene98959.t1 | AT1G23250 | 48.252 | 143 | 71 | 2 | 57 | 199 | 20 | 159 | 1.09e-40 | 137 |
| MS.gene98959.t1 | AT1G23250 | 48.252 | 143 | 71 | 2 | 57 | 199 | 50 | 189 | 5.43e-40 | 136 |
| MS.gene98959.t1 | AT2G33380 | 38.462 | 169 | 62 | 2 | 33 | 201 | 60 | 186 | 1.30e-37 | 129 |
| MS.gene98959.t1 | AT5G29560 | 48.148 | 108 | 56 | 0 | 33 | 140 | 63 | 170 | 3.41e-32 | 115 |
Find 40 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACAGCAATGCGTGAAAT+TGG | 0.190121 | 1.4:-16757597 | MS.gene98959:intron |
| AAGCAAACCATTCTTGTCTT+TGG | 0.246204 | 1.4:+16755309 | None:intergenic |
| CTTGTTTGAATTGCTGAAAA+AGG | 0.298907 | 1.4:-16755251 | MS.gene98959:CDS |
| TGGATATTCTTAACTTCAAT+TGG | 0.307296 | 1.4:+16756077 | None:intergenic |
| TCATCATATGTTAAAGCATT+TGG | 0.356094 | 1.4:+16755831 | None:intergenic |
| CACTCCCATGTTTGCCCCGT+TGG | 0.374563 | 1.4:+16756057 | None:intergenic |
| CAACAGCAATGCGTGAAATT+GGG | 0.416826 | 1.4:-16757596 | MS.gene98959:intron |
| AACCTTCCTTTGACATCTTT+AGG | 0.422579 | 1.4:+16755777 | None:intergenic |
| TTCTTGTTATCATATGATAC+AGG | 0.422673 | 1.4:+16758148 | None:intergenic |
| TCATATGTAGGATTTGTTGA+TGG | 0.435999 | 1.4:-16758028 | MS.gene98959:intron |
| TTCTTTGACTTGAATCATGA+TGG | 0.443395 | 1.4:-16757947 | MS.gene98959:CDS |
| GGGTTGGTAGCTTTGTTGAA+TGG | 0.445777 | 1.4:-16755351 | MS.gene98959:CDS |
| AATATCCAACGGGGCAAACA+TGG | 0.456851 | 1.4:-16756062 | MS.gene98959:CDS |
| TGAAGTTAAGAATATCCAAC+GGG | 0.458555 | 1.4:-16756072 | MS.gene98959:CDS |
| GTTTGTTGCATCTAAATTTG+AGG | 0.466576 | 1.4:-16755883 | MS.gene98959:CDS |
| ATGATGGTGTTATTTATCCA+TGG | 0.477891 | 1.4:-16757931 | MS.gene98959:CDS |
| AAACTTGCCAAAGACAAGAA+TGG | 0.495506 | 1.4:-16755316 | MS.gene98959:CDS |
| TATCCATGGGAGACTTTCCA+AGG | 0.507683 | 1.4:-16757917 | MS.gene98959:intron |
| GGCAAACATGGGAGTGACAC+TGG | 0.512670 | 1.4:-16756050 | MS.gene98959:CDS |
| AGGATTTGTTGATGGTATTG+AGG | 0.529818 | 1.4:-16758020 | MS.gene98959:CDS |
| ACAATCCGAGGAGTTTATGA+TGG | 0.535320 | 1.4:-16755277 | MS.gene98959:CDS |
| TGATGGTGTTATTTATCCAT+GGG | 0.540816 | 1.4:-16757930 | MS.gene98959:CDS |
| GCAATGCGTGAAATTGGGAG+TGG | 0.555445 | 1.4:-16757591 | MS.gene98959:CDS |
| AGCTTCCATCATAAACTCCT+CGG | 0.564407 | 1.4:+16755272 | None:intergenic |
| AGAGAGCCTAAAGATGTCAA+AGG | 0.568594 | 1.4:-16755783 | MS.gene98959:CDS |
| AGCCTAAAGATGTCAAAGGA+AGG | 0.598867 | 1.4:-16755779 | MS.gene98959:intron |
| CAATGCGTGAAATTGGGAGT+GGG | 0.601313 | 1.4:-16757590 | MS.gene98959:CDS |
| TTACCAACCGAATTAGGATG+AGG | 0.605034 | 1.4:+16755210 | None:intergenic |
| ATACCTTGGAAAGTCTCCCA+TGG | 0.606392 | 1.4:+16757914 | None:intergenic |
| ACTGGAGCATATGATTCTGA+AGG | 0.615429 | 1.4:-16756032 | MS.gene98959:CDS |
| ATATCCAACGGGGCAAACAT+GGG | 0.618740 | 1.4:-16756061 | MS.gene98959:CDS |
| CAGGGCGAGTTGTCTGACTG+AGG | 0.618929 | 1.4:+16757526 | None:intergenic |
| TTGAAGTTAAGAATATCCAA+CGG | 0.624281 | 1.4:-16756073 | MS.gene98959:CDS |
| GATAACAAGAAACTAGAGGA+AGG | 0.624914 | 1.4:-16758136 | MS.gene98959:intron |
| AGGGCGAGTTGTCTGACTGA+GGG | 0.633873 | 1.4:+16757527 | None:intergenic |
| GAGCATATGATTCTGAAGGA+AGG | 0.661835 | 1.4:-16756028 | MS.gene98959:intron |
| ATATGATAACAAGAAACTAG+AGG | 0.670209 | 1.4:-16758140 | MS.gene98959:CDS |
| CTTCAGAAAGAAACAATCCG+AGG | 0.674979 | 1.4:-16755289 | MS.gene98959:CDS |
| AATGCGTGAAATTGGGAGTG+GGG | 0.694422 | 1.4:-16757589 | MS.gene98959:CDS |
| GAAGTTAAGAATATCCAACG+GGG | 0.810368 | 1.4:-16756071 | MS.gene98959:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAAAATAATAATATTT+TGG | - | chr1.4:16756771-16756790 | MS.gene98959:intron | 0.0% |
| !! | AAAAAAAAAAAAAAATACCT+TGG | + | chr1.4:16755488-16755507 | None:intergenic | 10.0% |
| !! | AAAACTAAAAAAATATTACT+TGG | - | chr1.4:16756377-16756396 | MS.gene98959:intron | 10.0% |
| !! | AAAGATTATATCTTATAATT+TGG | - | chr1.4:16756616-16756635 | MS.gene98959:intron | 10.0% |
| !! | GTATTAAAGAAAAAAATTAT+AGG | + | chr1.4:16757410-16757429 | None:intergenic | 10.0% |
| !! | AATATATTGACCAAATATAT+TGG | - | chr1.4:16756345-16756364 | MS.gene98959:intron | 15.0% |
| !! | GAAAAATAATTAATTGTTTG+TGG | + | chr1.4:16756968-16756987 | None:intergenic | 15.0% |
| !! | TATTGAATAACCAATATATT+TGG | + | chr1.4:16756358-16756377 | None:intergenic | 15.0% |
| !! | TTAAATTTCAATTCATATGT+AGG | - | chr1.4:16755345-16755364 | MS.gene98959:CDS | 15.0% |
| !!! | AATAACACTTAAATTTTGTA+AGG | - | chr1.4:16755717-16755736 | MS.gene98959:intron | 15.0% |
| !!! | TTTTTTTTTTCTTCTTGAAT+TGG | - | chr1.4:16755957-16755976 | MS.gene98959:intron | 15.0% |
| !! | ACTTGAAAAGATTAATACAT+TGG | - | chr1.4:16755694-16755713 | MS.gene98959:intron | 20.0% |
| !! | AGTTATTAAGCTTCATAATT+AGG | - | chr1.4:16755584-16755603 | MS.gene98959:intron | 20.0% |
| !! | CATTTATTAAATGATGTATG+TGG | + | chr1.4:16757733-16757752 | None:intergenic | 20.0% |
| !! | TAAACAATTAGTTGTGTATA+TGG | - | chr1.4:16757694-16757713 | MS.gene98959:intron | 20.0% |
| !! | TACTTATGCTATCATTTATA+TGG | - | chr1.4:16757247-16757266 | MS.gene98959:intron | 20.0% |
| !! | TTCAATTAGACATTGAATTT+GGG | + | chr1.4:16755626-16755645 | None:intergenic | 20.0% |
| !! | TTTCAAATTATTAGTTGTGT+CGG | - | chr1.4:16757892-16757911 | MS.gene98959:intron | 20.0% |
| !!! | AAATTTTGTAAGGAGAAAAA+AGG | - | chr1.4:16755727-16755746 | MS.gene98959:intron | 20.0% |
| !!! | ACATCTTATAATTTTCTTCT+CGG | - | chr1.4:16755900-16755919 | MS.gene98959:intron | 20.0% |
| !!! | ACTCTCTTTTAAAATACTTT+TGG | + | chr1.4:16756903-16756922 | None:intergenic | 20.0% |
| !!! | AGCAATTTTGATATTTTTTC+TGG | - | chr1.4:16756116-16756135 | MS.gene98959:intron | 20.0% |
| !!! | ATATTTTGGTCTCAAAATTT+TGG | - | chr1.4:16756785-16756804 | MS.gene98959:intron | 20.0% |
| !!! | CTCTCTTTTAAAATACTTTT+GGG | + | chr1.4:16756902-16756921 | None:intergenic | 20.0% |
| !!! | TTCATAAGTCAAGTTTTTAT+TGG | + | chr1.4:16757112-16757131 | None:intergenic | 20.0% |
| ! | AAGTAATGTTCGTTTAAAAG+AGG | + | chr1.4:16757053-16757072 | None:intergenic | 25.0% |
| ! | AATTAATACTCGTATATGCA+GGG | - | chr1.4:16758014-16758033 | MS.gene98959:CDS | 25.0% |
| ! | ACTCAAAAAAGATATTTGAG+CGG | - | chr1.4:16756486-16756505 | MS.gene98959:intron | 25.0% |
| ! | AGAAAAAAGGAATTTGATAG+TGG | - | chr1.4:16755740-16755759 | MS.gene98959:intron | 25.0% |
| ! | ATATGATAACAAGAAACTAG+AGG | - | chr1.4:16755245-16755264 | MS.gene98959:CDS | 25.0% |
| ! | ATTAATGTTATACGACCTTA+TGG | + | chr1.4:16757080-16757099 | None:intergenic | 25.0% |
| ! | ATTACTTGAGCTAAACTATT+TGG | + | chr1.4:16755540-16755559 | None:intergenic | 25.0% |
| ! | CATAAAGAGATTTACTTACA+GGG | + | chr1.4:16755880-16755899 | None:intergenic | 25.0% |
| ! | GTTCAATTAGACATTGAATT+TGG | + | chr1.4:16755627-16755646 | None:intergenic | 25.0% |
| ! | TAATTAATACTCGTATATGC+AGG | - | chr1.4:16758013-16758032 | MS.gene98959:CDS | 25.0% |
| ! | TATGAAGCTTAATAACTACT+TGG | + | chr1.4:16755581-16755600 | None:intergenic | 25.0% |
| ! | TCATAAAGAGATTTACTTAC+AGG | + | chr1.4:16755881-16755900 | None:intergenic | 25.0% |
| ! | TCTTAACATGTGAATTGTTA+TGG | + | chr1.4:16755672-16755691 | None:intergenic | 25.0% |
| ! | TGGATATTCTTAACTTCAAT+TGG | + | chr1.4:16757311-16757330 | None:intergenic | 25.0% |
| ! | TTAACTTCAATTGGAAAAAG+TGG | + | chr1.4:16757302-16757321 | None:intergenic | 25.0% |
| ! | TTGAAGTTAAGAATATCCAA+CGG | - | chr1.4:16757312-16757331 | MS.gene98959:intron | 25.0% |
| !! | CTCTTTTACCTCTAATTTAT+AGG | + | chr1.4:16756708-16756727 | None:intergenic | 25.0% |
| !! | TCATCATATGTTAAAGCATT+TGG | + | chr1.4:16757557-16757576 | None:intergenic | 25.0% |
| !! | TCATCGAATCAATCTATTTT+TGG | + | chr1.4:16756467-16756486 | None:intergenic | 25.0% |
| !! | TGAAGAACATTTTCATGATT+TGG | + | chr1.4:16755405-16755424 | None:intergenic | 25.0% |
| !! | TTCTTGTTATCATATGATAC+AGG | + | chr1.4:16755240-16755259 | None:intergenic | 25.0% |
| !! | TTTTTCTTCTTGAATTGGAT+AGG | - | chr1.4:16755962-16755981 | MS.gene98959:intron | 25.0% |
| !!! | AACATTTTCATGATTTGGAA+TGG | + | chr1.4:16755400-16755419 | None:intergenic | 25.0% |
| !!! | AAGGTGAAACTTTAATTTGT+AGG | - | chr1.4:16756163-16756182 | MS.gene98959:intron | 25.0% |
| !!! | ACATTTTCATGATTTGGAAT+GGG | + | chr1.4:16755399-16755418 | None:intergenic | 25.0% |
| !!! | AGTCAAGTTTTTATTGGTTA+AGG | + | chr1.4:16757106-16757125 | None:intergenic | 25.0% |
| !!! | GTCAAGTTTTTATTGGTTAA+GGG | + | chr1.4:16757105-16757124 | None:intergenic | 25.0% |
| AAGAGAGTCTTAAGGATATA+TGG | - | chr1.4:16756723-16756742 | MS.gene98959:intron | 30.0% | |
| AATATACTCAAAGACATAGC+TGG | + | chr1.4:16756850-16756869 | None:intergenic | 30.0% | |
| CTATGACTTATGGACAATTA+AGG | - | chr1.4:16756144-16756163 | MS.gene98959:intron | 30.0% | |
| CTTGTTTGAATTGCTGAAAA+AGG | - | chr1.4:16758134-16758153 | MS.gene98959:intron | 30.0% | |
| TAAGCTTCATAATTAGGTCA+AGG | - | chr1.4:16755590-16755609 | MS.gene98959:intron | 30.0% | |
| TATTTACATAAGCGTCTTAG+TGG | + | chr1.4:16756751-16756770 | None:intergenic | 30.0% | |
| TGAAGTTAAGAATATCCAAC+GGG | - | chr1.4:16757313-16757332 | MS.gene98959:intron | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | + | chr1.4:16757859-16757878 | None:intergenic | 30.0% | |
| TTCATAATTAGGTCAAGGTT+AGG | - | chr1.4:16755595-16755614 | MS.gene98959:intron | 30.0% | |
| ! | GTTTGTTGCATCTAAATTTG+AGG | - | chr1.4:16757502-16757521 | MS.gene98959:intron | 30.0% |
| ! | TATATGGTTCTTGTTGTGTA+GGG | - | chr1.4:16757263-16757282 | MS.gene98959:intron | 30.0% |
| ! | TTATATGGTTCTTGTTGTGT+AGG | - | chr1.4:16757262-16757281 | MS.gene98959:intron | 30.0% |
| ! | TTTTGGTCTCAAAATTTTGG+AGG | - | chr1.4:16756788-16756807 | MS.gene98959:intron | 30.0% |
| !! | ATGATGGTGTTATTTATCCA+TGG | - | chr1.4:16755454-16755473 | MS.gene98959:intron | 30.0% |
| !! | GAACATTACTTTTGTCCATA+AGG | - | chr1.4:16757062-16757081 | MS.gene98959:intron | 30.0% |
| !! | GTTTTAGTAACCTTAGTCAT+GGG | + | chr1.4:16756929-16756948 | None:intergenic | 30.0% |
| !! | TCATATGTAGGATTTGTTGA+TGG | - | chr1.4:16755357-16755376 | MS.gene98959:intron | 30.0% |
| !! | TGATGGTGTTATTTATCCAT+GGG | - | chr1.4:16755455-16755474 | MS.gene98959:intron | 30.0% |
| !! | TTCTTTGACTTGAATCATGA+TGG | - | chr1.4:16755438-16755457 | MS.gene98959:intron | 30.0% |
| !!! | AAGACATAGCTGGTTTTTAA+AGG | + | chr1.4:16756840-16756859 | None:intergenic | 30.0% |
| !!! | TGGTTGAAACTGAAGTTTTT+TGG | + | chr1.4:16756447-16756466 | None:intergenic | 30.0% |
| AAACTTGCCAAAGACAAGAA+TGG | - | chr1.4:16758069-16758088 | MS.gene98959:intron | 35.0% | |
| AACCTTCCTTTGACATCTTT+AGG | + | chr1.4:16757611-16757630 | None:intergenic | 35.0% | |
| AAGCAAACCATTCTTGTCTT+TGG | + | chr1.4:16758079-16758098 | None:intergenic | 35.0% | |
| ACTAAGGTTACTAAAACCCT+AGG | - | chr1.4:16756932-16756951 | MS.gene98959:intron | 35.0% | |
| AGAGGTAAAAGAGAGTCTTA+AGG | - | chr1.4:16756715-16756734 | MS.gene98959:intron | 35.0% | |
| CAAATTATTAGTTGTGTCGG+CGG | - | chr1.4:16757895-16757914 | MS.gene98959:intron | 35.0% | |
| CAATTGGAAAAAGTGGAGAT+GGG | + | chr1.4:16757295-16757314 | None:intergenic | 35.0% | |
| GAAGTTAAGAATATCCAACG+GGG | - | chr1.4:16757314-16757333 | MS.gene98959:intron | 35.0% | |
| GATAACAAGAAACTAGAGGA+AGG | - | chr1.4:16755249-16755268 | MS.gene98959:CDS | 35.0% | |
| TATTTGAGCGGTGAAGTAAA+AGG | - | chr1.4:16756498-16756517 | MS.gene98959:intron | 35.0% | |
| TCAATTGGAAAAAGTGGAGA+TGG | + | chr1.4:16757296-16757315 | None:intergenic | 35.0% | |
| TCTGGTTGAACTATGACTTA+TGG | - | chr1.4:16756134-16756153 | MS.gene98959:intron | 35.0% | |
| TGAGCTAAACTATTTGGTCA+TGG | + | chr1.4:16755534-16755553 | None:intergenic | 35.0% | |
| ! | AAATTATTAGTTGTGTCGGC+GGG | - | chr1.4:16757896-16757915 | MS.gene98959:intron | 35.0% |
| ! | TTGTGGATCTAAAACTCCTA+GGG | + | chr1.4:16756951-16756970 | None:intergenic | 35.0% |
| ! | TTTGTGGATCTAAAACTCCT+AGG | + | chr1.4:16756952-16756971 | None:intergenic | 35.0% |
| !! | AGGATTTGTTGATGGTATTG+AGG | - | chr1.4:16755365-16755384 | MS.gene98959:intron | 35.0% |
| !! | GGTTTTAGTAACCTTAGTCA+TGG | + | chr1.4:16756930-16756949 | None:intergenic | 35.0% |
| !!! | AGCTGCTATTTTCATCAATG+TGG | - | chr1.4:16755835-16755854 | MS.gene98959:CDS | 35.0% |
| AATACTCGTATATGCAGGGT+TGG | - | chr1.4:16758018-16758037 | MS.gene98959:CDS | 40.0% | |
| ACAACAGCAATGCGTGAAAT+TGG | - | chr1.4:16755788-16755807 | MS.gene98959:CDS | 40.0% | |
| ACAATCCGAGGAGTTTATGA+TGG | - | chr1.4:16758108-16758127 | MS.gene98959:intron | 40.0% | |
| ACTGGAGCATATGATTCTGA+AGG | - | chr1.4:16757353-16757372 | MS.gene98959:intron | 40.0% | |
| AGAGAGCCTAAAGATGTCAA+AGG | - | chr1.4:16757602-16757621 | MS.gene98959:intron | 40.0% | |
| AGCCTAAAGATGTCAAAGGA+AGG | - | chr1.4:16757606-16757625 | MS.gene98959:intron | 40.0% | |
| AGCTTCCATCATAAACTCCT+CGG | + | chr1.4:16758116-16758135 | None:intergenic | 40.0% | |
| ATCCGATCATCTATGAAGCA+CGG | + | chr1.4:16757959-16757978 | None:intergenic | 40.0% | |
| ATCCGTGCTTCATAGATGAT+CGG | - | chr1.4:16757954-16757973 | MS.gene98959:CDS | 40.0% | |
| CAAAATTGCTAGCTCAAACG+CGG | + | chr1.4:16756106-16756125 | None:intergenic | 40.0% | |
| CAACAGCAATGCGTGAAATT+GGG | - | chr1.4:16755789-16755808 | MS.gene98959:CDS | 40.0% | |
| CATCAAGATATCCTCATTCG+TGG | + | chr1.4:16756535-16756554 | None:intergenic | 40.0% | |
| CCAACTCTCACTGAACATAT+AGG | - | chr1.4:16757171-16757190 | MS.gene98959:intron | 40.0% | |
| CCTATATGTTCAGTGAGAGT+TGG | + | chr1.4:16757174-16757193 | None:intergenic | 40.0% | |
| CTTCAGAAAGAAACAATCCG+AGG | - | chr1.4:16758096-16758115 | MS.gene98959:intron | 40.0% | |
| TAGTGACCAGCTATAAAGCA+CGG | - | chr1.4:16757781-16757800 | MS.gene98959:intron | 40.0% | |
| TCATCTATGAAGCACGGATA+CGG | + | chr1.4:16757953-16757972 | None:intergenic | 40.0% | |
| TGAAAATAGCTCAAGAGAGC+TGG | + | chr1.4:16756815-16756834 | None:intergenic | 40.0% | |
| ! | GAGCATATGATTCTGAAGGA+AGG | - | chr1.4:16757357-16757376 | MS.gene98959:intron | 40.0% |
| !! | GTAATTACAAGTGTCGGTGT+CGG | + | chr1.4:16757853-16757872 | None:intergenic | 40.0% |
| AAGTGCAAATGCCACGAATG+AGG | - | chr1.4:16756521-16756540 | MS.gene98959:intron | 45.0% | |
| AATATCCAACGGGGCAAACA+TGG | - | chr1.4:16757323-16757342 | MS.gene98959:intron | 45.0% | |
| AATGCGTGAAATTGGGAGTG+GGG | - | chr1.4:16755796-16755815 | MS.gene98959:CDS | 45.0% | |
| AGTTATGTCACCTTGCGTGT+AGG | - | chr1.4:16756676-16756695 | MS.gene98959:intron | 45.0% | |
| ATACCTTGGAAAGTCTCCCA+TGG | + | chr1.4:16755474-16755493 | None:intergenic | 45.0% | |
| ATATCCAACGGGGCAAACAT+GGG | - | chr1.4:16757324-16757343 | MS.gene98959:intron | 45.0% | |
| CAATGCGTGAAATTGGGAGT+GGG | - | chr1.4:16755795-16755814 | MS.gene98959:CDS | 45.0% | |
| GGGCGGTTCCTATAAATTAG+AGG | - | chr1.4:16756697-16756716 | MS.gene98959:intron | 45.0% | |
| GTGCTTCATAGATGATCGGA+TGG | - | chr1.4:16757958-16757977 | MS.gene98959:CDS | 45.0% | |
| GTTATGTCACCTTGCGTGTA+GGG | - | chr1.4:16756677-16756696 | MS.gene98959:intron | 45.0% | |
| TATAAAGCACGGACACTCCT+CGG | - | chr1.4:16757792-16757811 | MS.gene98959:intron | 45.0% | |
| TATCCATGGGAGACTTTCCA+AGG | - | chr1.4:16755468-16755487 | MS.gene98959:intron | 45.0% | |
| !! | GGGTTGGTAGCTTTGTTGAA+TGG | - | chr1.4:16758034-16758053 | MS.gene98959:intron | 45.0% |
| !!! | AGTAAAAAAATATATTTTTT+AGG | - | chr1.4:16757480-16757499 | MS.gene98959:intron | 5.0% |
| !!! | TAAAAAATATATTTTTTTAC+TGG | + | chr1.4:16757481-16757500 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTCATAA+AGG | - | chr1.4:16755493-16755512 | MS.gene98959:intron | 5.0% |
| ACACGACATGTGTTCGACAC+CGG | + | chr1.4:16757830-16757849 | None:intergenic | 50.0% | |
| AGAGAGTCGTCCCATGACTA+AGG | - | chr1.4:16756916-16756935 | MS.gene98959:intron | 50.0% | |
| ATCGGATGGTGTACGATGCA+TGG | - | chr1.4:16757972-16757991 | MS.gene98959:CDS | 50.0% | |
| GAGTGTCCGTGCTTTATAGC+TGG | + | chr1.4:16757790-16757809 | None:intergenic | 50.0% | |
| GCAATGCGTGAAATTGGGAG+TGG | - | chr1.4:16755794-16755813 | MS.gene98959:CDS | 50.0% | |
| AGGGCGAGTTGTCTGACTGA+GGG | + | chr1.4:16755861-16755880 | None:intergenic | 55.0% | |
| ATGAAGCACGGATACGGACG+CGG | + | chr1.4:16757947-16757966 | None:intergenic | 55.0% | |
| ATGTCACCTTGCGTGTAGGG+CGG | - | chr1.4:16756680-16756699 | MS.gene98959:intron | 55.0% | |
| CACGACATGTGTTCGACACC+GGG | + | chr1.4:16757829-16757848 | None:intergenic | 55.0% | |
| GGCAAACATGGGAGTGACAC+TGG | - | chr1.4:16757335-16757354 | MS.gene98959:intron | 55.0% | |
| CACTCCCATGTTTGCCCCGT+TGG | + | chr1.4:16757331-16757350 | None:intergenic | 60.0% | |
| CAGGGCGAGTTGTCTGACTG+AGG | + | chr1.4:16755862-16755881 | None:intergenic | 60.0% | |
| CGCGGACACTGGACACAACA+CGG | + | chr1.4:16757929-16757948 | None:intergenic | 60.0% | |
| TAGGAACCGCCCTACACGCA+AGG | + | chr1.4:16756689-16756708 | None:intergenic | 60.0% | |
| ACGGATACGGACGCGGACAC+TGG | + | chr1.4:16757940-16757959 | None:intergenic | 65.0% | |
| GCACGGACACTCCTCGGACT+AGG | - | chr1.4:16757798-16757817 | MS.gene98959:intron | 65.0% | |
| ! | TCCTCGGACTAGGCGTGTCC+CGG | - | chr1.4:16757808-16757827 | MS.gene98959:intron | 65.0% |
| ACCGGGACACGCCTAGTCCG+AGG | + | chr1.4:16757812-16757831 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 16755222 | 16758185 | 16755222 | ID=MS.gene98959 |
| chr1.4 | mRNA | 16755222 | 16758185 | 16755222 | ID=MS.gene98959.t1;Parent=MS.gene98959 |
| chr1.4 | exon | 16758137 | 16758185 | 16758137 | ID=MS.gene98959.t1.exon1;Parent=MS.gene98959.t1 |
| chr1.4 | CDS | 16758137 | 16758185 | 16758137 | ID=cds.MS.gene98959.t1;Parent=MS.gene98959.t1 |
| chr1.4 | exon | 16757918 | 16758040 | 16757918 | ID=MS.gene98959.t1.exon2;Parent=MS.gene98959.t1 |
| chr1.4 | CDS | 16757918 | 16758040 | 16757918 | ID=cds.MS.gene98959.t1;Parent=MS.gene98959.t1 |
| chr1.4 | exon | 16757527 | 16757612 | 16757527 | ID=MS.gene98959.t1.exon3;Parent=MS.gene98959.t1 |
| chr1.4 | CDS | 16757527 | 16757612 | 16757527 | ID=cds.MS.gene98959.t1;Parent=MS.gene98959.t1 |
| chr1.4 | exon | 16756029 | 16756123 | 16756029 | ID=MS.gene98959.t1.exon4;Parent=MS.gene98959.t1 |
| chr1.4 | CDS | 16756029 | 16756123 | 16756029 | ID=cds.MS.gene98959.t1;Parent=MS.gene98959.t1 |
| chr1.4 | exon | 16755780 | 16755905 | 16755780 | ID=MS.gene98959.t1.exon5;Parent=MS.gene98959.t1 |
| chr1.4 | CDS | 16755780 | 16755905 | 16755780 | ID=cds.MS.gene98959.t1;Parent=MS.gene98959.t1 |
| chr1.4 | exon | 16755222 | 16755372 | 16755222 | ID=MS.gene98959.t1.exon6;Parent=MS.gene98959.t1 |
| chr1.4 | CDS | 16755222 | 16755372 | 16755222 | ID=cds.MS.gene98959.t1;Parent=MS.gene98959.t1 |
| Gene Sequence |
| Protein sequence |
