Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99702.t1 | XP_003614006.1 | 94.6 | 129 | 6 | 1 | 1 | 128 | 1 | 129 | 1.00E-54 | 223.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99702.t1 | Q9ZQ80 | 47.1 | 68 | 33 | 1 | 26 | 90 | 68 | 135 | 4.6e-08 | 60.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99702.t1 | G7JXW3 | 94.6 | 129 | 6 | 1 | 1 | 128 | 1 | 129 | 7.3e-55 | 223.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050605 | MS.gene99702 | 0.800774 | 1.23E-48 | -1.69E-46 |
| MS.gene050680 | MS.gene99702 | 0.878516 | 2.64E-69 | -1.69E-46 |
| MS.gene050750 | MS.gene99702 | 0.828246 | 1.00E-54 | -1.69E-46 |
| MS.gene050953 | MS.gene99702 | 0.821788 | 3.35E-53 | -1.69E-46 |
| MS.gene051368 | MS.gene99702 | 0.817269 | 3.60E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene99702 | 0.82283 | 1.92E-53 | -1.69E-46 |
| MS.gene052426 | MS.gene99702 | 0.807944 | 3.95E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene99702 | 0.805865 | 1.09E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene99702 | 0.850028 | 2.21E-60 | -1.69E-46 |
| MS.gene053201 | MS.gene99702 | 0.804041 | 2.61E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene99702 | 0.82126 | 4.44E-53 | -1.69E-46 |
| MS.gene054405 | MS.gene99702 | 0.817912 | 2.58E-52 | -1.69E-46 |
| MS.gene054559 | MS.gene99702 | 0.827796 | 1.28E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene99702 | 0.802889 | 4.53E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene99702 | 0.834324 | 3.20E-56 | -1.69E-46 |
| MS.gene055356 | MS.gene99702 | 0.82841 | 9.13E-55 | -1.69E-46 |
| MS.gene055358 | MS.gene99702 | 0.833995 | 3.87E-56 | -1.69E-46 |
| MS.gene055367 | MS.gene99702 | 0.81211 | 5.00E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene99702 | 0.859896 | 3.01E-63 | -1.69E-46 |
| MS.gene056506 | MS.gene99702 | 0.807091 | 5.99E-50 | -1.69E-46 |
| MS.gene057156 | MS.gene99702 | -0.80656 | 7.75E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene99702 | 0.810098 | 1.36E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene99702 | 0.824615 | 7.33E-54 | -1.69E-46 |
| MS.gene059161 | MS.gene99702 | 0.850406 | 1.73E-60 | -1.69E-46 |
| MS.gene059162 | MS.gene99702 | 0.801531 | 8.62E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene99702 | 0.825704 | 4.05E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene99702 | 0.818405 | 1.99E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene99702 | 0.845552 | 3.78E-59 | -1.69E-46 |
| MS.gene060802 | MS.gene99702 | 0.81061 | 1.06E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene99702 | 0.816739 | 4.74E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene99702 | -0.825216 | 5.29E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99702.t1 | MTR_5g043660 | 88.298 | 282 | 20 | 3 | 1 | 280 | 1 | 271 | 1.47e-94 | 280 |
| MS.gene99702.t1 | MTR_4g082830 | 39.450 | 109 | 47 | 5 | 9 | 104 | 10 | 112 | 8.62e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 102 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGTTCCGGTGGTGGTTA+TGG | 0.256501 | 5.3:+31143769 | MS.gene99702:CDS |
| GGTTATTCTGGTGGTGGGTT+TGG | 0.263234 | 5.3:+31143580 | MS.gene99702:CDS |
| TGGATATGGTTATGTTAATT+AGG | 0.263569 | 5.3:+31144104 | MS.gene99702:CDS |
| GGTGGAAATGGTGGTTATTA+TGG | 0.263846 | 5.3:+31143601 | MS.gene99702:CDS |
| TGTTCACCTTGCCAGGTTCA+TGG | 0.278749 | 5.3:-31143408 | None:intergenic |
| GATCGCTATGAGAGTGGATA+TGG | 0.300108 | 5.3:+31143880 | MS.gene99702:CDS |
| GGAGCTACTGGTGGTGGTTA+TGG | 0.301488 | 5.3:+31143739 | MS.gene99702:CDS |
| TATGGTAATGAGCAAAGTTT+TGG | 0.303327 | 5.3:+31144042 | MS.gene99702:CDS |
| GACAACTACAACAATTATTA+TGG | 0.304026 | 5.3:+31143286 | MS.gene99702:CDS |
| TGGTGGTTATTATGGAAATA+AGG | 0.304690 | 5.3:+31143609 | MS.gene99702:CDS |
| GGTGGTGGGTTTGGTGGAAA+TGG | 0.307504 | 5.3:+31143589 | MS.gene99702:CDS |
| ACCAGTTGCACCTAAAATAT+TGG | 0.314021 | 5.3:-31143455 | None:intergenic |
| TATGGATATGGAGGGCGTTC+TGG | 0.326809 | 5.3:+31144015 | MS.gene99702:CDS |
| CGTTCAAGTATTGGTGGATA+TGG | 0.328623 | 5.3:+31143967 | MS.gene99702:CDS |
| TTGGCCTTGTTCACCTTGCC+AGG | 0.330282 | 5.3:-31143415 | None:intergenic |
| GGGTATGGAGGTGGACGTTT+TGG | 0.332134 | 5.3:+31143808 | MS.gene99702:CDS |
| GGTTATGGAGGTGGACGTTC+TGG | 0.333707 | 5.3:+31143715 | MS.gene99702:CDS |
| TATTCTGGTGGTGGGTTTGG+TGG | 0.342508 | 5.3:+31143583 | MS.gene99702:CDS |
| CGTTCGAGTATTGGTGGATA+TGG | 0.357610 | 5.3:+31143934 | MS.gene99702:CDS |
| GGTGGTGGTTATGGTTCTAA+TGG | 0.364436 | 5.3:+31143748 | MS.gene99702:CDS |
| AGTCGCTTCAGTGGTGGATA+TGG | 0.366456 | 5.3:+31144090 | MS.gene99702:CDS |
| GCTCGGTACTCGAATGGTTC+TGG | 0.368973 | 5.3:-31143336 | None:intergenic |
| TTCCTCTGCTAAGGTCTTAT+CGG | 0.369377 | 5.3:+31143363 | MS.gene99702:CDS |
| TCTAGTGGTGGCTATGGATA+TGG | 0.370645 | 5.3:+31144003 | MS.gene99702:CDS |
| GTTGTTCCGGTGGTGGTTAT+GGG | 0.375268 | 5.3:+31143770 | MS.gene99702:CDS |
| GGAGGGCGTTCTGGTGGTTA+TGG | 0.376684 | 5.3:+31144024 | MS.gene99702:CDS |
| GAGAGTGGTTATGGACGTTT+TGG | 0.379000 | 5.3:+31143646 | MS.gene99702:CDS |
| GAGAGTGGATATGGGCGTTC+TGG | 0.380092 | 5.3:+31143889 | MS.gene99702:CDS |
| GATCGCTCTGGTGGTGGTTA+TGG | 0.380816 | 5.3:+31143850 | MS.gene99702:CDS |
| AAGTATCATGAGAGTGGTTA+TGG | 0.384520 | 5.3:+31143637 | MS.gene99702:CDS |
| GGGCGTTCTGGTAGTGGATA+TGG | 0.400902 | 5.3:+31143901 | MS.gene99702:CDS |
| AACCGATCTAGTGGTGGTTA+TGG | 0.402760 | 5.3:+31143700 | MS.gene99702:CDS |
| AACAATTATTATGGTGGTCA+TGG | 0.417999 | 5.3:+31143295 | MS.gene99702:CDS |
| TATGGTTCTAATGGTTGTTC+CGG | 0.422319 | 5.3:+31143757 | MS.gene99702:CDS |
| AATAATAACGAGAGTGGGTA+TGG | 0.434805 | 5.3:+31143793 | MS.gene99702:CDS |
| GGTGGGTTTGGTGGAAATGG+TGG | 0.442531 | 5.3:+31143592 | MS.gene99702:CDS |
| GGACGTTCTGGTGGAGCTAC+TGG | 0.454859 | 5.3:+31143727 | MS.gene99702:CDS |
| GGATATGGGCGTTCTGGTAG+TGG | 0.454988 | 5.3:+31143895 | MS.gene99702:CDS |
| AACCGTTCTAGTGGTGGCTA+TGG | 0.494450 | 5.3:+31143997 | MS.gene99702:CDS |
| TCTAATGGTTGTTCCGGTGG+TGG | 0.506588 | 5.3:+31143763 | MS.gene99702:CDS |
| TCTAGTGGTGGTTATGGAGG+TGG | 0.511654 | 5.3:+31143706 | MS.gene99702:CDS |
| GGTGAACAAGGCCAAGGTTG+CGG | 0.521243 | 5.3:+31143423 | MS.gene99702:CDS |
| GGAAGCAGCAACCGCAACCT+TGG | 0.526211 | 5.3:-31143434 | None:intergenic |
| GGTGGTACTAGTGGTGGTTA+CGG | 0.530741 | 5.3:+31143670 | MS.gene99702:CDS |
| TGCTAAGGTCTTATCGGAAG+CGG | 0.530792 | 5.3:+31143369 | MS.gene99702:CDS |
| AACGAGAGTGGGTATGGAGG+TGG | 0.536019 | 5.3:+31143799 | MS.gene99702:CDS |
| TCCGATGATCGCTCTGGTGG+TGG | 0.538658 | 5.3:+31143844 | MS.gene99702:CDS |
| TCTTCCTCCGGTGTTCCTAC+CGG | 0.539541 | 5.3:+31143547 | MS.gene99702:CDS |
| TGGTGTTGTTGATGAGAGAA+AGG | 0.540028 | 5.3:+31143474 | MS.gene99702:CDS |
| AAAATGGTTATTCTGGTGGT+GGG | 0.545962 | 5.3:+31143575 | MS.gene99702:CDS |
| ATCGCTATGAGAGTGGATAT+GGG | 0.552395 | 5.3:+31143881 | MS.gene99702:CDS |
| TATGGGAATAATAACGAGAG+TGG | 0.553125 | 5.3:+31143787 | MS.gene99702:CDS |
| GATGGAGGACGTTCAAGTAT+TGG | 0.558070 | 5.3:+31143958 | MS.gene99702:CDS |
| AGTCAACATGACTCTTCCTC+CGG | 0.559101 | 5.3:+31143535 | MS.gene99702:CDS |
| GATAATAAGTATCATGAGAG+TGG | 0.561322 | 5.3:+31143631 | MS.gene99702:CDS |
| CTCCATAACCACCACTAGAT+CGG | 0.562154 | 5.3:-31143702 | None:intergenic |
| CGTGATAGTCGCTTCAGTGG+TGG | 0.564497 | 5.3:+31144084 | MS.gene99702:CDS |
| GATGGAGGACGTTCGAGTAT+TGG | 0.567469 | 5.3:+31143925 | MS.gene99702:CDS |
| ATTATTCCCATAACCACCAC+CGG | 0.569833 | 5.3:-31143776 | None:intergenic |
| TTTGGAGGGTATGGTAGGGA+TGG | 0.569920 | 5.3:+31144060 | MS.gene99702:CDS |
| TCTGTTTACAACCATGAACC+TGG | 0.572399 | 5.3:+31143397 | MS.gene99702:CDS |
| AGTGGTGGCTATGGATATGG+AGG | 0.573815 | 5.3:+31144006 | MS.gene99702:CDS |
| ACAATTATTATGGTGGTCAT+GGG | 0.575107 | 5.3:+31143296 | MS.gene99702:CDS |
| CGATCTAGTGGTGGTTATGG+AGG | 0.575416 | 5.3:+31143703 | MS.gene99702:CDS |
| AATAACGAGAGTGGGTATGG+AGG | 0.576193 | 5.3:+31143796 | MS.gene99702:CDS |
| GGATATGGAGGGCGTTCTGG+TGG | 0.586766 | 5.3:+31144018 | MS.gene99702:CDS |
| TCTGGTGGAGCTACTGGTGG+TGG | 0.587836 | 5.3:+31143733 | MS.gene99702:CDS |
| TATGGTTCCGATGATCGCTC+TGG | 0.588825 | 5.3:+31143838 | MS.gene99702:CDS |
| TGAACCTGGCAAGGTGAACA+AGG | 0.589426 | 5.3:+31143411 | MS.gene99702:CDS |
| GGAGAAGAAAACCGTTCTAG+TGG | 0.590432 | 5.3:+31143988 | MS.gene99702:CDS |
| TCTGGTAGTGGATATGGTGA+TGG | 0.595727 | 5.3:+31143907 | MS.gene99702:CDS |
| AACTACAACAATTATTATGG+TGG | 0.597383 | 5.3:+31143289 | MS.gene99702:CDS |
| ATGGGAATAATAACGAGAGT+GGG | 0.598404 | 5.3:+31143788 | MS.gene99702:CDS |
| TATGGAGGTGGACGTTCTGG+TGG | 0.601172 | 5.3:+31143718 | MS.gene99702:CDS |
| TCCACTCTCATAGCGATCAT+CGG | 0.601903 | 5.3:-31143875 | None:intergenic |
| GGAGGACGTTCGAGTATTGG+TGG | 0.602193 | 5.3:+31143928 | MS.gene99702:CDS |
| GAAGAAAACCGTTCTAGTGG+TGG | 0.605340 | 5.3:+31143991 | MS.gene99702:CDS |
| ACCACCACCAGAGCGATCAT+CGG | 0.613164 | 5.3:-31143845 | None:intergenic |
| AGTATTGGTGGATATGGTGA+TGG | 0.613326 | 5.3:+31143940 | MS.gene99702:CDS |
| GGAGGACGTTCAAGTATTGG+TGG | 0.614595 | 5.3:+31143961 | MS.gene99702:CDS |
| GGTTCTAATGGTTGTTCCGG+TGG | 0.615828 | 5.3:+31143760 | MS.gene99702:CDS |
| TGGCAAGGTGAACAAGGCCA+AGG | 0.617007 | 5.3:+31143417 | MS.gene99702:CDS |
| ATTGGTGGATATGGTGATGG+AGG | 0.617016 | 5.3:+31143943 | MS.gene99702:CDS |
| TTATTATGGTGGTCATGGGA+AGG | 0.617040 | 5.3:+31143300 | MS.gene99702:CDS |
| GGTCGTGATAGTCGCTTCAG+TGG | 0.617359 | 5.3:+31144081 | MS.gene99702:CDS |
| ATCCATAGCCACCACTAGAA+CGG | 0.618974 | 5.3:-31143999 | None:intergenic |
| ATGTATGTTGACAAAGCCGC+TGG | 0.630172 | 5.3:+31143505 | MS.gene99702:CDS |
| GGTCTTGATAACCGATCTAG+TGG | 0.630982 | 5.3:+31143691 | MS.gene99702:CDS |
| TTACAACCATGAACCTGGCA+AGG | 0.631337 | 5.3:+31143402 | MS.gene99702:CDS |
| TTTGGTGGTGGTACTAGTGG+TGG | 0.633917 | 5.3:+31143664 | MS.gene99702:CDS |
| CGTTCTGGTGGAGCTACTGG+TGG | 0.642243 | 5.3:+31143730 | MS.gene99702:CDS |
| GCCGATGATCGCTATGAGAG+TGG | 0.642608 | 5.3:+31143874 | MS.gene99702:CDS |
| GGTGTTGTTGATGAGAGAAA+GGG | 0.652776 | 5.3:+31143475 | MS.gene99702:CDS |
| GTTGATGAGAGAAAGGGCGT+TGG | 0.655100 | 5.3:+31143481 | MS.gene99702:CDS |
| TTCCGATAAGACCTTAGCAG+AGG | 0.663258 | 5.3:-31143365 | None:intergenic |
| CTTGATAACCGATCTAGTGG+TGG | 0.664610 | 5.3:+31143694 | MS.gene99702:CDS |
| CATGGGAAGGAACAACGTCA+CGG | 0.671295 | 5.3:+31143313 | MS.gene99702:CDS |
| ATGTTGACTTAGATAACCAG+CGG | 0.672962 | 5.3:-31143521 | None:intergenic |
| GGTAGTGGATATGGTGATGG+AGG | 0.676160 | 5.3:+31143910 | MS.gene99702:CDS |
| GGTTCCGATGATCGCTCTGG+TGG | 0.677788 | 5.3:+31143841 | MS.gene99702:CDS |
| GTGGTGGCTATGGATATGGA+GGG | 0.695224 | 5.3:+31144007 | MS.gene99702:CDS |
| TCGTCCGGTAGGAACACCGG+AGG | 0.697557 | 5.3:-31143551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AACTACAACAATTATTATGG+TGG | + | chr5.3:31143289-31143308 | MS.gene99702:CDS | 25.0% |
| ! | GACAACTACAACAATTATTA+TGG | + | chr5.3:31143286-31143305 | MS.gene99702:CDS | 25.0% |
| AACAATTATTATGGTGGTCA+TGG | + | chr5.3:31143295-31143314 | MS.gene99702:CDS | 30.0% | |
| ACAATTATTATGGTGGTCAT+GGG | + | chr5.3:31143296-31143315 | MS.gene99702:CDS | 30.0% | |
| GATAATAAGTATCATGAGAG+TGG | + | chr5.3:31143631-31143650 | MS.gene99702:CDS | 30.0% | |
| TGGTGGTTATTATGGAAATA+AGG | + | chr5.3:31143609-31143628 | MS.gene99702:CDS | 30.0% | |
| !! | TATGGTAATGAGCAAAGTTT+TGG | + | chr5.3:31144042-31144061 | MS.gene99702:CDS | 30.0% |
| !!! | AGAATAACCATTTTTTCGTC+CGG | - | chr5.3:31143569-31143588 | None:intergenic | 30.0% |
| AAAAATGGTTATTCTGGTGG+TGG | + | chr5.3:31143574-31143593 | MS.gene99702:CDS | 35.0% | |
| AAAATGGTTATTCTGGTGGT+GGG | + | chr5.3:31143575-31143594 | MS.gene99702:CDS | 35.0% | |
| AAGTATCATGAGAGTGGTTA+TGG | + | chr5.3:31143637-31143656 | MS.gene99702:CDS | 35.0% | |
| AATAATAACGAGAGTGGGTA+TGG | + | chr5.3:31143793-31143812 | MS.gene99702:CDS | 35.0% | |
| ACCAGTTGCACCTAAAATAT+TGG | - | chr5.3:31143458-31143477 | None:intergenic | 35.0% | |
| ATGGGAATAATAACGAGAGT+GGG | + | chr5.3:31143788-31143807 | MS.gene99702:CDS | 35.0% | |
| CGAAAAAATGGTTATTCTGG+TGG | + | chr5.3:31143571-31143590 | MS.gene99702:CDS | 35.0% | |
| GGACGAAAAAATGGTTATTC+TGG | + | chr5.3:31143568-31143587 | MS.gene99702:CDS | 35.0% | |
| TATGGGAATAATAACGAGAG+TGG | + | chr5.3:31143787-31143806 | MS.gene99702:CDS | 35.0% | |
| !! | ATGTTGACTTAGATAACCAG+CGG | - | chr5.3:31143524-31143543 | None:intergenic | 35.0% |
| !! | GTTGCTGCTTCCAATATTTT+AGG | + | chr5.3:31143445-31143464 | MS.gene99702:CDS | 35.0% |
| !! | TATGGTTCTAATGGTTGTTC+CGG | + | chr5.3:31143757-31143776 | MS.gene99702:CDS | 35.0% |
| !! | TCCAATATTTTAGGTGCAAC+TGG | + | chr5.3:31143454-31143473 | MS.gene99702:CDS | 35.0% |
| !!! | GTAATGAGCAAAGTTTTGGA+GGG | + | chr5.3:31144046-31144065 | MS.gene99702:CDS | 35.0% |
| AAAAAAGCTCGGTACTCGAA+TGG | - | chr5.3:31143345-31143364 | None:intergenic | 40.0% | |
| ATCGCTATGAGAGTGGATAT+GGG | + | chr5.3:31143881-31143900 | MS.gene99702:CDS | 40.0% | |
| ATTATTCCCATAACCACCAC+CGG | - | chr5.3:31143779-31143798 | None:intergenic | 40.0% | |
| CTTAGCAGAGGAAAAAAGCT+CGG | - | chr5.3:31143356-31143375 | None:intergenic | 40.0% | |
| GGTGGAAATGGTGGTTATTA+TGG | + | chr5.3:31143601-31143620 | MS.gene99702:CDS | 40.0% | |
| TCTGTTTACAACCATGAACC+TGG | + | chr5.3:31143397-31143416 | MS.gene99702:CDS | 40.0% | |
| TTATTATGGTGGTCATGGGA+AGG | + | chr5.3:31143300-31143319 | MS.gene99702:CDS | 40.0% | |
| ! | TTCCTCTGCTAAGGTCTTAT+CGG | + | chr5.3:31143363-31143382 | MS.gene99702:CDS | 40.0% |
| !! | AGTATTGGTGGATATGGTGA+TGG | + | chr5.3:31143940-31143959 | MS.gene99702:CDS | 40.0% |
| !! | CGTTCAAGTATTGGTGGATA+TGG | + | chr5.3:31143967-31143986 | MS.gene99702:CDS | 40.0% |
| !! | GGTAATGAGCAAAGTTTTGG+AGG | + | chr5.3:31144045-31144064 | MS.gene99702:CDS | 40.0% |
| !! | GGTGTTGTTGATGAGAGAAA+GGG | + | chr5.3:31143475-31143494 | MS.gene99702:CDS | 40.0% |
| !! | TGGTGTTGTTGATGAGAGAA+AGG | + | chr5.3:31143474-31143493 | MS.gene99702:CDS | 40.0% |
| !!! | AAAGTTTTGGAGGGTATGGT+AGG | + | chr5.3:31144055-31144074 | MS.gene99702:CDS | 40.0% |
| !!! | AAGTTTTGGAGGGTATGGTA+GGG | + | chr5.3:31144056-31144075 | MS.gene99702:CDS | 40.0% |
| !!! | TAACCATTTTTTCGTCCGGT+AGG | - | chr5.3:31143565-31143584 | None:intergenic | 40.0% |
| AACCGATCTAGTGGTGGTTA+TGG | + | chr5.3:31143700-31143719 | MS.gene99702:CDS | 45.0% | |
| AATAACGAGAGTGGGTATGG+AGG | + | chr5.3:31143796-31143815 | MS.gene99702:CDS | 45.0% | |
| AGTCAACATGACTCTTCCTC+CGG | + | chr5.3:31143535-31143554 | MS.gene99702:CDS | 45.0% | |
| ATCCATAGCCACCACTAGAA+CGG | - | chr5.3:31144002-31144021 | None:intergenic | 45.0% | |
| ATGTATGTTGACAAAGCCGC+TGG | + | chr5.3:31143505-31143524 | MS.gene99702:CDS | 45.0% | |
| CTCCATAACCACCACTAGAT+CGG | - | chr5.3:31143705-31143724 | None:intergenic | 45.0% | |
| GAAGAAAACCGTTCTAGTGG+TGG | + | chr5.3:31143991-31144010 | MS.gene99702:CDS | 45.0% | |
| GATCGCTATGAGAGTGGATA+TGG | + | chr5.3:31143880-31143899 | MS.gene99702:CDS | 45.0% | |
| GATGGAGGACGTTCAAGTAT+TGG | + | chr5.3:31143958-31143977 | MS.gene99702:CDS | 45.0% | |
| GGAGAAGAAAACCGTTCTAG+TGG | + | chr5.3:31143988-31144007 | MS.gene99702:CDS | 45.0% | |
| GTTCCTACCGGACGAAAAAA+TGG | + | chr5.3:31143559-31143578 | MS.gene99702:CDS | 45.0% | |
| TCCACTCTCATAGCGATCAT+CGG | - | chr5.3:31143878-31143897 | None:intergenic | 45.0% | |
| TCTAGTGGTGGCTATGGATA+TGG | + | chr5.3:31144003-31144022 | MS.gene99702:CDS | 45.0% | |
| TTACAACCATGAACCTGGCA+AGG | + | chr5.3:31143402-31143421 | MS.gene99702:CDS | 45.0% | |
| TTCCGATAAGACCTTAGCAG+AGG | - | chr5.3:31143368-31143387 | None:intergenic | 45.0% | |
| ! | AGTGGTTATGGACGTTTTGG+TGG | + | chr5.3:31143649-31143668 | MS.gene99702:CDS | 45.0% |
| ! | CTTGATAACCGATCTAGTGG+TGG | + | chr5.3:31143694-31143713 | MS.gene99702:CDS | 45.0% |
| ! | GAGAGTGGTTATGGACGTTT+TGG | + | chr5.3:31143646-31143665 | MS.gene99702:CDS | 45.0% |
| ! | GGTCTTGATAACCGATCTAG+TGG | + | chr5.3:31143691-31143710 | MS.gene99702:CDS | 45.0% |
| ! | TGCTAAGGTCTTATCGGAAG+CGG | + | chr5.3:31143369-31143388 | MS.gene99702:CDS | 45.0% |
| !! | ATTGGTGGATATGGTGATGG+AGG | + | chr5.3:31143943-31143962 | MS.gene99702:CDS | 45.0% |
| !! | CGTTCGAGTATTGGTGGATA+TGG | + | chr5.3:31143934-31143953 | MS.gene99702:CDS | 45.0% |
| !! | GGTGGTGGTTATGGTTCTAA+TGG | + | chr5.3:31143748-31143767 | MS.gene99702:CDS | 45.0% |
| !! | TCTGGTAGTGGATATGGTGA+TGG | + | chr5.3:31143907-31143926 | MS.gene99702:CDS | 45.0% |
| !!! | CGAGCTTTTTTCCTCTGCTA+AGG | + | chr5.3:31143354-31143373 | MS.gene99702:CDS | 45.0% |
| !!! | GAGCAAAGTTTTGGAGGGTA+TGG | + | chr5.3:31144051-31144070 | MS.gene99702:CDS | 45.0% |
| AACCGTTCTAGTGGTGGCTA+TGG | + | chr5.3:31143997-31144016 | MS.gene99702:CDS | 50.0% | |
| AGTGGTGGCTATGGATATGG+AGG | + | chr5.3:31144006-31144025 | MS.gene99702:CDS | 50.0% | |
| CATGGGAAGGAACAACGTCA+CGG | + | chr5.3:31143313-31143332 | MS.gene99702:CDS | 50.0% | |
| CGATCTAGTGGTGGTTATGG+AGG | + | chr5.3:31143703-31143722 | MS.gene99702:CDS | 50.0% | |
| GATGGAGGACGTTCGAGTAT+TGG | + | chr5.3:31143925-31143944 | MS.gene99702:CDS | 50.0% | |
| GGTGGTACTAGTGGTGGTTA+CGG | + | chr5.3:31143670-31143689 | MS.gene99702:CDS | 50.0% | |
| GTGGTGGCTATGGATATGGA+GGG | + | chr5.3:31144007-31144026 | MS.gene99702:CDS | 50.0% | |
| TATGGTTCCGATGATCGCTC+TGG | + | chr5.3:31143838-31143857 | MS.gene99702:CDS | 50.0% | |
| TCTAATGGTTGTTCCGGTGG+TGG | + | chr5.3:31143763-31143782 | MS.gene99702:CDS | 50.0% | |
| TCTAGTGGTGGTTATGGAGG+TGG | + | chr5.3:31143706-31143725 | MS.gene99702:CDS | 50.0% | |
| TGAACCTGGCAAGGTGAACA+AGG | + | chr5.3:31143411-31143430 | MS.gene99702:CDS | 50.0% | |
| TGTTCACCTTGCCAGGTTCA+TGG | - | chr5.3:31143411-31143430 | None:intergenic | 50.0% | |
| ! | GGTTCTAATGGTTGTTCCGG+TGG | + | chr5.3:31143760-31143779 | MS.gene99702:CDS | 50.0% |
| ! | GTTGATGAGAGAAAGGGCGT+TGG | + | chr5.3:31143481-31143500 | MS.gene99702:CDS | 50.0% |
| ! | GTTGTTCCGGTGGTGGTTAT+GGG | + | chr5.3:31143770-31143789 | MS.gene99702:CDS | 50.0% |
| ! | TATGGAGGTGGACGTTTTGG+TGG | + | chr5.3:31143811-31143830 | MS.gene99702:CDS | 50.0% |
| ! | TTTGGAGGGTATGGTAGGGA+TGG | + | chr5.3:31144060-31144079 | MS.gene99702:CDS | 50.0% |
| ! | TTTTCGTCCGGTAGGAACAC+CGG | - | chr5.3:31143557-31143576 | None:intergenic | 50.0% |
| !! | AGTCGCTTCAGTGGTGGATA+TGG | + | chr5.3:31144090-31144109 | MS.gene99702:CDS | 50.0% |
| !! | GGAGGACGTTCAAGTATTGG+TGG | + | chr5.3:31143961-31143980 | MS.gene99702:CDS | 50.0% |
| !! | GGTAGTGGATATGGTGATGG+AGG | + | chr5.3:31143910-31143929 | MS.gene99702:CDS | 50.0% |
| !! | GGTTATGGACGTTTTGGTGG+TGG | + | chr5.3:31143652-31143671 | MS.gene99702:CDS | 50.0% |
| !! | GGTTATTCTGGTGGTGGGTT+TGG | + | chr5.3:31143580-31143599 | MS.gene99702:CDS | 50.0% |
| !! | TATGGATATGGAGGGCGTTC+TGG | + | chr5.3:31144015-31144034 | MS.gene99702:CDS | 50.0% |
| !! | TATTCTGGTGGTGGGTTTGG+TGG | + | chr5.3:31143583-31143602 | MS.gene99702:CDS | 50.0% |
| !! | TTTGGTGGTGGTACTAGTGG+TGG | + | chr5.3:31143664-31143683 | MS.gene99702:CDS | 50.0% |
| !!! | CGTTTTGGTGGTGGTACTAG+TGG | + | chr5.3:31143661-31143680 | MS.gene99702:CDS | 50.0% |
| !!! | GGACGTTTTGGTGGTGGTTA+TGG | + | chr5.3:31143820-31143839 | MS.gene99702:CDS | 50.0% |
| AACGAGAGTGGGTATGGAGG+TGG | + | chr5.3:31143799-31143818 | MS.gene99702:CDS | 55.0% | |
| ACCACCACCAGAGCGATCAT+CGG | - | chr5.3:31143848-31143867 | None:intergenic | 55.0% | |
| CGTGATAGTCGCTTCAGTGG+TGG | + | chr5.3:31144084-31144103 | MS.gene99702:CDS | 55.0% | |
| GAGAGTGGATATGGGCGTTC+TGG | + | chr5.3:31143889-31143908 | MS.gene99702:CDS | 55.0% | |
| GCCGATGATCGCTATGAGAG+TGG | + | chr5.3:31143874-31143893 | MS.gene99702:CDS | 55.0% | |
| GCTCGGTACTCGAATGGTTC+TGG | - | chr5.3:31143339-31143358 | None:intergenic | 55.0% | |
| GGATATGGGCGTTCTGGTAG+TGG | + | chr5.3:31143895-31143914 | MS.gene99702:CDS | 55.0% | |
| GGTCGTGATAGTCGCTTCAG+TGG | + | chr5.3:31144081-31144100 | MS.gene99702:CDS | 55.0% | |
| GGTGAACAAGGCCAAGGTTG+CGG | + | chr5.3:31143423-31143442 | MS.gene99702:CDS | 55.0% | |
| GGTTATGGAGGTGGACGTTC+TGG | + | chr5.3:31143715-31143734 | MS.gene99702:CDS | 55.0% | |
| TATGGAGGTGGACGTTCTGG+TGG | + | chr5.3:31143718-31143737 | MS.gene99702:CDS | 55.0% | |
| TCTTCCTCCGGTGTTCCTAC+CGG | + | chr5.3:31143547-31143566 | MS.gene99702:CDS | 55.0% | |
| TGGCAAGGTGAACAAGGCCA+AGG | + | chr5.3:31143417-31143436 | MS.gene99702:CDS | 55.0% | |
| ! | GGGTATGGAGGTGGACGTTT+TGG | + | chr5.3:31143808-31143827 | MS.gene99702:CDS | 55.0% |
| ! | GGTTGTTCCGGTGGTGGTTA+TGG | + | chr5.3:31143769-31143788 | MS.gene99702:CDS | 55.0% |
| !! | GATCGCTCTGGTGGTGGTTA+TGG | + | chr5.3:31143850-31143869 | MS.gene99702:CDS | 55.0% |
| !! | GGAGCTACTGGTGGTGGTTA+TGG | + | chr5.3:31143739-31143758 | MS.gene99702:CDS | 55.0% |
| !! | GGAGGACGTTCGAGTATTGG+TGG | + | chr5.3:31143928-31143947 | MS.gene99702:CDS | 55.0% |
| !! | GGGCGTTCTGGTAGTGGATA+TGG | + | chr5.3:31143901-31143920 | MS.gene99702:CDS | 55.0% |
| !! | GGTGGGTTTGGTGGAAATGG+TGG | + | chr5.3:31143592-31143611 | MS.gene99702:CDS | 55.0% |
| !! | GGTGGTGGGTTTGGTGGAAA+TGG | + | chr5.3:31143589-31143608 | MS.gene99702:CDS | 55.0% |
| !! | TTGGCCTTGTTCACCTTGCC+AGG | - | chr5.3:31143418-31143437 | None:intergenic | 55.0% |
| CGTTCTGGTGGAGCTACTGG+TGG | + | chr5.3:31143730-31143749 | MS.gene99702:CDS | 60.0% | |
| GGAAGCAGCAACCGCAACCT+TGG | - | chr5.3:31143437-31143456 | None:intergenic | 60.0% | |
| GGACGTTCTGGTGGAGCTAC+TGG | + | chr5.3:31143727-31143746 | MS.gene99702:CDS | 60.0% | |
| GGTTCCGATGATCGCTCTGG+TGG | + | chr5.3:31143841-31143860 | MS.gene99702:CDS | 60.0% | |
| TCCGATGATCGCTCTGGTGG+TGG | + | chr5.3:31143844-31143863 | MS.gene99702:CDS | 60.0% | |
| TCTGGTGGAGCTACTGGTGG+TGG | + | chr5.3:31143733-31143752 | MS.gene99702:CDS | 60.0% | |
| !! | GGAGGGCGTTCTGGTGGTTA+TGG | + | chr5.3:31144024-31144043 | MS.gene99702:CDS | 60.0% |
| !! | GGAGGTGGACGTTTTGGTGG+TGG | + | chr5.3:31143814-31143833 | MS.gene99702:CDS | 60.0% |
| !! | GGATATGGAGGGCGTTCTGG+TGG | + | chr5.3:31144018-31144037 | MS.gene99702:CDS | 60.0% |
| TCGTCCGGTAGGAACACCGG+AGG | - | chr5.3:31143554-31143573 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 31143283 | 31144125 | 31143283 | ID=MS.gene99702 |
| chr5.3 | mRNA | 31143283 | 31144125 | 31143283 | ID=MS.gene99702.t1;Parent=MS.gene99702 |
| chr5.3 | exon | 31143283 | 31144125 | 31143283 | ID=MS.gene99702.t1.exon1;Parent=MS.gene99702.t1 |
| chr5.3 | CDS | 31143283 | 31144125 | 31143283 | ID=cds.MS.gene99702.t1;Parent=MS.gene99702.t1 |
| Gene Sequence |
| Protein sequence |
