AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048281.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048281.01.T01 MTR_4g087250 82.143 224 14 3 47 265 57 259 1.80e-121 354
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048281.01.T01 AT3G52050 50.388 258 95 6 17 265 11 244 1.58e-69 221
MsG0080048281.01.T01 AT3G52050 50.388 258 95 6 17 265 11 244 1.58e-69 221
MsG0080048281.01.T01 AT3G52050 50.388 258 95 6 17 265 34 267 2.66e-69 221
MsG0080048281.01.T01 AT3G52050 48.837 258 87 8 17 265 11 232 2.11e-63 204
MsG0080048281.01.T01 AT3G52050 47.287 258 85 7 17 265 34 249 4.68e-61 197
MsG0080048281.01.T01 AT3G52050 47.287 258 85 7 17 265 11 226 1.40e-60 197
MsG0080048281.01.T01 AT3G52050 47.287 258 85 7 17 265 11 226 1.40e-60 197
MsG0080048281.01.T01 AT3G52050 47.287 258 85 7 17 265 34 249 2.38e-60 197

Find 72 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCAGATTATTGATGTTC+TGG 0.236084 contig261end:+30227 MsG0080048281.01.T01:intron
GCAGCTCCGTAACTAATTTC+TGG 0.255837 contig261end:-28620 None:intergenic
TGTTTGAAGGCCAGAACTTT+AGG 0.328926 contig261end:+33341 MsG0080048281.01.T01:intron
TACTCCTGATACCATTGTTC+AGG 0.336956 contig261end:+33402 MsG0080048281.01.T01:CDS
TGCAGTTTCAGTGTCGGAAC+CGG 0.359337 contig261end:-28162 None:intergenic
ATAGATTGTGCCTAAAGTTC+TGG 0.365868 contig261end:-33351 None:intergenic
TTCATTAAATGATAGGTTCC+AGG 0.372126 contig261end:+33533 MsG0080048281.01.T01:intron
TCTGCCATTGGCCGCAGCTT+CGG 0.385305 contig261end:-28675 None:intergenic
GTCTTTAATAGTTTCAAGAT+AGG 0.394655 contig261end:+33622 MsG0080048281.01.T01:CDS
CATCCGATGGAAATGGAGAT+TGG 0.403389 contig261end:+29433 MsG0080048281.01.T01:CDS
GGCAGAGTTATGCTTATTGA+TGG 0.411530 contig261end:+28692 MsG0080048281.01.T01:CDS
GAACGCACGCACCTTTGAAA+TGG 0.422270 contig261end:-28199 None:intergenic
CCCAGCATCAACACTCCTTA+AGG 0.425425 contig261end:-33588 None:intergenic
GAATTAAGAGTCTGACGAAA+TGG 0.427805 contig261end:-32214 None:intergenic
AGTCCCTGAACAATGGTATC+AGG 0.428886 contig261end:-33406 None:intergenic
TGATTGGAACATTAGCCTTA+AGG 0.432237 contig261end:+33573 MsG0080048281.01.T01:CDS
TTCTTTCTACTCTATTCAAA+TGG 0.432437 contig261end:+28261 MsG0080048281.01.T01:CDS
TGGCCTTGATGGATGCTTTG+AGG 0.438000 contig261end:-33435 None:intergenic
GGAGGCACCGTTCCGGTGGT+TGG 0.438122 contig261end:-28599 None:intergenic
TCTAGCACATCCGATGGAAA+TGG 0.443240 contig261end:+29426 MsG0080048281.01.T01:CDS
GAATAGAGTAGAAAGAATAA+TGG 0.444397 contig261end:-28255 None:intergenic
AATTTCTGGAGGCACCGTTC+CGG 0.448299 contig261end:-28606 None:intergenic
ATTGGCCGCAGCTTCGGCAT+TGG 0.451298 contig261end:-28669 None:intergenic
GCAGTTTCAGTGTCGGAACC+GGG 0.458805 contig261end:-28161 None:intergenic
ATCCGATGGAAATGGAGATT+GGG 0.475049 contig261end:+29434 MsG0080048281.01.T01:CDS
GCCTTAAGGAGTGTTGATGC+TGG 0.485198 contig261end:+33587 MsG0080048281.01.T01:CDS
TCTTTGGATTCACATAAAGA+TGG 0.492913 contig261end:+28557 MsG0080048281.01.T01:CDS
GGCATTGAAGTTAAACGCTA+TGG 0.501724 contig261end:-28234 None:intergenic
AATGCCGAAGCTGCGGCCAA+TGG 0.509054 contig261end:+28671 MsG0080048281.01.T01:CDS
AATTTGATATCTTACCATCA+TGG 0.513196 contig261end:-30447 None:intergenic
GGACGATTGCTCTTGTACGC+AGG 0.526137 contig261end:-33376 None:intergenic
TTCTGGAGGCACCGTTCCGG+TGG 0.532696 contig261end:-28603 None:intergenic
CAGAAAGTCTTGATGAGGGT+GGG 0.544281 contig261end:-29645 None:intergenic
GAAGTTAAACGCTATGGCAT+GGG 0.549488 contig261end:-28228 None:intergenic
TGAAGTTAAACGCTATGGCA+TGG 0.551018 contig261end:-28229 None:intergenic
AGTTTCAGTGTCGGAACCGG+GGG 0.553886 contig261end:-28159 None:intergenic
CCTTAAGGAGTGTTGATGCT+GGG 0.554132 contig261end:+33588 MsG0080048281.01.T01:CDS
GTGCCTCCAGAAATTAGTTA+CGG 0.556767 contig261end:+28614 MsG0080048281.01.T01:CDS
GTAGAAGCAGATGATGTGAT+TGG 0.557576 contig261end:+33557 MsG0080048281.01.T01:CDS
ATTCATTCCTTCCCATGTGG+TGG 0.559114 contig261end:+30251 MsG0080048281.01.T01:CDS
CAGTTTCAGTGTCGGAACCG+GGG 0.560029 contig261end:-28160 None:intergenic
AATAAGCATAACTCTGCCAT+TGG 0.562489 contig261end:-28687 None:intergenic
ACATCATCTGCTTCTACACC+TGG 0.562883 contig261end:-33551 None:intergenic
ACTCCTGATACCATTGTTCA+GGG 0.563327 contig261end:+33403 MsG0080048281.01.T01:CDS
TCTGCAACTTCTCCAACCAC+CGG 0.572776 contig261end:+28587 MsG0080048281.01.T01:CDS
CAAAGCATCCATCAAGGCCA+TGG 0.574954 contig261end:+33438 MsG0080048281.01.T01:CDS
GACGATTGCTCTTGTACGCA+GGG 0.578661 contig261end:-33375 None:intergenic
AAACATACCACCACATGGGA+AGG 0.581300 contig261end:-30258 None:intergenic
GAGTGTTGATGCTGGGTACA+AGG 0.582786 contig261end:+33595 MsG0080048281.01.T01:CDS
AACCCAATCTCCATTTCCAT+CGG 0.588128 contig261end:-29436 None:intergenic
TGAACAATGGTATCAGGAGT+AGG 0.591744 contig261end:-33400 None:intergenic
CAGGTAGTGTTTGACCATGA+TGG 0.597006 contig261end:+30433 MsG0080048281.01.T01:intron
TCAGAAAGTCTTGATGAGGG+TGG 0.598660 contig261end:-29646 None:intergenic
AACTTCTCCAACCACCGGAA+CGG 0.599945 contig261end:+28592 MsG0080048281.01.T01:CDS
AAATTCAGAAAGTCTTGATG+AGG 0.603539 contig261end:-29650 None:intergenic
GGTAACAGAACCAATGTGCA+CGG 0.607886 contig261end:-28648 None:intergenic
GGAATTCATTCCTTCCCATG+TGG 0.611125 contig261end:+30248 MsG0080048281.01.T01:CDS
GCTGCTCAACCCGTGCACAT+TGG 0.615289 contig261end:+28638 MsG0080048281.01.T01:CDS
GTAGTATGCTCTATGAATCA+CGG 0.624519 contig261end:-28720 None:intergenic
AATTCAGAAAGTCTTGATGA+GGG 0.626144 contig261end:-29649 None:intergenic
TGTTACCAATGCCGAAGCTG+CGG 0.627137 contig261end:+28664 MsG0080048281.01.T01:CDS
ATACCTCAAAGCATCCATCA+AGG 0.628176 contig261end:+33432 MsG0080048281.01.T01:CDS
GGACAAAACATACCACCACA+TGG 0.628503 contig261end:-30263 None:intergenic
TGGTCATCTAGCACATCCGA+TGG 0.637447 contig261end:+29420 MsG0080048281.01.T01:CDS
GTAACAGAACCAATGTGCAC+GGG 0.641689 contig261end:-28647 None:intergenic
ACAATGGTATCAGGAGTAGG+AGG 0.659704 contig261end:-33397 None:intergenic
GTATTGAAGTCCCTGAACAA+TGG 0.660032 contig261end:-33413 None:intergenic
GACAAAACATACCACCACAT+GGG 0.676208 contig261end:-30262 None:intergenic
GCTCCGTAACTAATTTCTGG+AGG 0.677777 contig261end:-28617 None:intergenic
GTTTCAGTGTCGGAACCGGG+GGG 0.686032 contig261end:-28158 None:intergenic
TTGATAGCAAAATTGCACCA+TGG 0.689907 contig261end:+29400 MsG0080048281.01.T01:intron
TCGGATGTGCTAGATGACCA+TGG 0.738716 contig261end:-29417 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTAAATACACAAAT+AGG - contig261end:32626-32645 None:intergenic 10.0%
!! ATATAAATTCATTAAATGAT+AGG + contig261end:33526-33545 MsG0080048281.01.T01:intron 10.0%
!! ATATATAACTACAATATAAA+GGG - contig261end:32339-32358 None:intergenic 10.0%
!! TATGACAAAAAAAAAAATTA+AGG - contig261end:31373-31392 None:intergenic 10.0%
!!! ATTTGTGTATTTAATTTTTT+TGG + contig261end:32626-32645 MsG0080048281.01.T01:intron 10.0%
!!! TAATTTTTATAAACTATTCT+TGG + contig261end:29792-29811 MsG0080048281.01.T01:intron 10.0%
!!! TTTTTTAACAAAAAATAACA+GGG + contig261end:31646-31665 MsG0080048281.01.T01:intron 10.0%
!! ATAAAAATTATCTTGAATCA+AGG - contig261end:29782-29801 None:intergenic 15.0%
!! CATATATAACTACAATATAA+AGG - contig261end:32340-32359 None:intergenic 15.0%
!! TATATAACTACAATATAAAG+GGG - contig261end:32338-32357 None:intergenic 15.0%
!! TTACAATAAAAAAGATATTG+AGG + contig261end:30878-30897 MsG0080048281.01.T01:intron 15.0%
!! TTCAAGTAAAATCTTAATAA+AGG + contig261end:32169-32188 MsG0080048281.01.T01:intron 15.0%
!!! AAATATGATAATTTTTAGTG+TGG + contig261end:30131-30150 MsG0080048281.01.T01:intron 15.0%
!!! AATCTTTTTACAATGTTTTT+TGG - contig261end:30707-30726 None:intergenic 15.0%
!!! ACATAATTATGATTTTTTTG+AGG - contig261end:32980-32999 None:intergenic 15.0%
!!! GTTTTTTAACAAAAAATAAC+AGG + contig261end:31645-31664 MsG0080048281.01.T01:intron 15.0%
!!! TTTTTCAACAACAAAAAATA+CGG + contig261end:31253-31272 MsG0080048281.01.T01:intron 15.0%
!! AAAACAATGTGTTAAAAACA+AGG - contig261end:33280-33299 None:intergenic 20.0%
!! AAATATACTAGCAAATATAG+AGG - contig261end:30476-30495 None:intergenic 20.0%
!! CAAATAAGAACAGAATAAAA+TGG - contig261end:33117-33136 None:intergenic 20.0%
!! GAAAAACCAATAAAAATAAG+AGG - contig261end:29326-29345 None:intergenic 20.0%
!! TATCTCATAACTTAATGATT+GGG - contig261end:31811-31830 None:intergenic 20.0%
!! TCAATAAAAGAATCCTAATT+TGG - contig261end:30684-30703 None:intergenic 20.0%
!! TTATCTCATAACTTAATGAT+TGG - contig261end:31812-31831 None:intergenic 20.0%
!!! AATTGTTCTAAACAAGAAAT+GGG - contig261end:28323-28342 None:intergenic 20.0%
!!! ACTTGTTTGATAAACTTTTT+GGG + contig261end:29254-29273 MsG0080048281.01.T01:intron 20.0%
!!! ATAAGTACTTTCACATTTTT+TGG - contig261end:31005-31024 None:intergenic 20.0%
!!! CATCTTTTTAATTTTTCTGA+TGG - contig261end:28995-29014 None:intergenic 20.0%
!!! TAATACTTAATACTGTGTTT+TGG + contig261end:33186-33205 MsG0080048281.01.T01:intron 20.0%
!!! TATGCATTATTGTTTTGTTA+TGG + contig261end:28754-28773 MsG0080048281.01.T01:intron 20.0%
!!! TGGAAAAATATTAACTTTTC+TGG + contig261end:29675-29694 MsG0080048281.01.T01:CDS 20.0%
!!! TTATCTTTTTAACCAAAGTT+GGG - contig261end:29719-29738 None:intergenic 20.0%
!!! TTTATTGGTTTTTCGTATTT+GGG + contig261end:29332-29351 MsG0080048281.01.T01:intron 20.0%
!!! TTTTATTGGTTTTTCGTATT+TGG + contig261end:29331-29350 MsG0080048281.01.T01:intron 20.0%
! AACAACATCAAAAAGAAACA+AGG - contig261end:29597-29616 None:intergenic 25.0%
! AACCAATAAAAATAAGAGGA+AGG - contig261end:29322-29341 None:intergenic 25.0%
! AATTTGATATCTTACCATCA+TGG - contig261end:30450-30469 None:intergenic 25.0%
! AGAAGACAAATATATATGAC+AGG + contig261end:31766-31785 MsG0080048281.01.T01:intron 25.0%
! ATCAATGAATATAGTGTCAT+AGG + contig261end:31988-32007 MsG0080048281.01.T01:intron 25.0%
! ATTACCATGAAAGATCAAAT+AGG - contig261end:30504-30523 None:intergenic 25.0%
! ATTCGCAAAATTTATGATCA+TGG + contig261end:29529-29548 MsG0080048281.01.T01:intron 25.0%
! ATTGTAGTTATATATGCACA+AGG + contig261end:32344-32363 MsG0080048281.01.T01:intron 25.0%
! CAACATAAGTACAGTTAATA+CGG + contig261end:31123-31142 MsG0080048281.01.T01:intron 25.0%
! CAATAAAAATGAGAAAGAAC+AGG - contig261end:33013-33032 None:intergenic 25.0%
! CATCAGTAAACACTTATTAT+AGG + contig261end:30833-30852 MsG0080048281.01.T01:intron 25.0%
! CCAACATAATTAAAATTCAC+AGG - contig261end:29233-29252 None:intergenic 25.0%
! GAAGACAAATATATATGACA+GGG + contig261end:31767-31786 MsG0080048281.01.T01:intron 25.0%
! GAATAGAGTAGAAAGAATAA+TGG - contig261end:28258-28277 None:intergenic 25.0%
! GACAGGTTATTTATTGAAAA+AGG + contig261end:32470-32489 MsG0080048281.01.T01:intron 25.0%
! TAAAAACAAGGTCAAAGAAT+CGG - contig261end:33268-33287 None:intergenic 25.0%
! TAATGATGCTTTGATTCAAT+TGG + contig261end:33152-33171 MsG0080048281.01.T01:intron 25.0%
! TAGACTATATGAACATCAAA+AGG - contig261end:32739-32758 None:intergenic 25.0%
! TGCAAATATAATAATTGTCG+TGG + contig261end:31300-31319 MsG0080048281.01.T01:intron 25.0%
! TTACATAAACTCAATATCCT+TGG - contig261end:31957-31976 None:intergenic 25.0%
! TTCTTAAGTTAATCAAAAGC+TGG + contig261end:31091-31110 MsG0080048281.01.T01:intron 25.0%
! TTCTTTCTACTCTATTCAAA+TGG + contig261end:28261-28280 MsG0080048281.01.T01:CDS 25.0%
! TTGTAGTTATATATGCACAA+GGG + contig261end:32345-32364 MsG0080048281.01.T01:intron 25.0%
! TTTACAGAACAAACAACAAT+GGG + contig261end:31621-31640 MsG0080048281.01.T01:intron 25.0%
! TTTACATTGAAGAAACTTTG+CGG + contig261end:30012-30031 MsG0080048281.01.T01:intron 25.0%
!! AAAAGCGATTAAAACAGTTT+TGG + contig261end:30950-30969 MsG0080048281.01.T01:intron 25.0%
!! AAACAAAGTTTTACTGCTAA+AGG + contig261end:32241-32260 MsG0080048281.01.T01:CDS 25.0%
!! AAAGCGATTAAAACAGTTTT+GGG + contig261end:30951-30970 MsG0080048281.01.T01:intron 25.0%
!! ATGGTCTTAATCAAAACATA+AGG - contig261end:30647-30666 None:intergenic 25.0%
!! CACTTGTTTGATAAACTTTT+TGG + contig261end:29253-29272 MsG0080048281.01.T01:intron 25.0%
!! CTTATCTTTTTAACCAAAGT+TGG - contig261end:29720-29739 None:intergenic 25.0%
!! GAATTGTTCTAAACAAGAAA+TGG - contig261end:28324-28343 None:intergenic 25.0%
!! TATGATCATGGATCAATTTT+TGG + contig261end:29541-29560 MsG0080048281.01.T01:intron 25.0%
!! TTCATTCTTTTCCATTTCAA+AGG + contig261end:28188-28207 MsG0080048281.01.T01:CDS 25.0%
!! TTTTACAGAACAAACAACAA+TGG + contig261end:31620-31639 MsG0080048281.01.T01:intron 25.0%
!! TTTTGATGTTCATATAGTCT+AGG + contig261end:32738-32757 MsG0080048281.01.T01:intron 25.0%
!!! CCTGTGAATTTTAATTATGT+TGG + contig261end:29230-29249 MsG0080048281.01.T01:intron 25.0%
!!! TAATGTCTTCTAGAATGTTT+TGG + contig261end:29175-29194 MsG0080048281.01.T01:intron 25.0%
!!! TTATTGGTTTTTCGTATTTG+GGG + contig261end:29333-29352 MsG0080048281.01.T01:intron 25.0%
!!! TTCCTTCCTCTTATTTTTAT+TGG + contig261end:29317-29336 MsG0080048281.01.T01:intron 25.0%
AAAAAAATTAAGGCCAAGTC+TGG - contig261end:31363-31382 None:intergenic 30.0%
AAAAACAAGGTCAAAGAATC+GGG - contig261end:33267-33286 None:intergenic 30.0%
AAATTCAGAAAGTCTTGATG+AGG - contig261end:29653-29672 None:intergenic 30.0%
AACTCAATATCCTTGGTTAT+CGG - contig261end:31950-31969 None:intergenic 30.0%
AAGAACAGAATAAAATGGCA+AGG - contig261end:33112-33131 None:intergenic 30.0%
AAGTTGGGCATTAAAATTAG+TGG - contig261end:29704-29723 None:intergenic 30.0%
AATGAATATAGTGTCATAGG+AGG + contig261end:31991-32010 MsG0080048281.01.T01:intron 30.0%
AATGACAATATAGATGCTGT+GGG + contig261end:30746-30765 MsG0080048281.01.T01:intron 30.0%
AATTCAGAAAGTCTTGATGA+GGG - contig261end:29652-29671 None:intergenic 30.0%
ACAGAAAAGATAGTTCACTT+CGG - contig261end:31573-31592 None:intergenic 30.0%
AGAAATGCATTTCCAACTTT+AGG - contig261end:31075-31094 None:intergenic 30.0%
AGACAATGGTTTACATGATA+AGG - contig261end:29847-29866 None:intergenic 30.0%
AGGGGTTTAAATTCTGATAT+AGG - contig261end:32320-32339 None:intergenic 30.0%
AGGGTAAAAATCAAAGAGAT+GGG + contig261end:31847-31866 MsG0080048281.01.T01:intron 30.0%
AGGGTCAAAGTGAATTTATT+TGG - contig261end:32657-32676 None:intergenic 30.0%
ATAATTGCATCCTTTAGCTA+GGG + contig261end:31828-31847 MsG0080048281.01.T01:intron 30.0%
ATAGTCTAGGCTAATTCATT+CGG + contig261end:32751-32770 MsG0080048281.01.T01:intron 30.0%
ATCTATCTGCTTAGAATTGT+AGG + contig261end:33068-33087 MsG0080048281.01.T01:intron 30.0%
ATGGAATTCCTGAAATGAAA+AGG - contig261end:32198-32217 None:intergenic 30.0%
ATTCTGATCTCTGATATGAA+GGG + contig261end:29617-29636 MsG0080048281.01.T01:intron 30.0%
CGAAAGAAGAATAAAAAGCA+CGG - contig261end:28492-28511 None:intergenic 30.0%
CGATACTGTTATCATAACTT+GGG - contig261end:32451-32470 None:intergenic 30.0%
GAAATGCATTTCCAACTTTA+GGG - contig261end:31074-31093 None:intergenic 30.0%
GAAATGTAAGTTAGACTCTA+TGG - contig261end:32119-32138 None:intergenic 30.0%
GATAATAATCTCAACTGCTT+TGG + contig261end:32813-32832 MsG0080048281.01.T01:intron 30.0%
GGGTCAAAGTGAATTTATTT+GGG - contig261end:32656-32675 None:intergenic 30.0%
GGTCAAAGTGAATTTATTTG+GGG - contig261end:32655-32674 None:intergenic 30.0%
GTAAACACTTATTATAGGAG+AGG + contig261end:30838-30857 MsG0080048281.01.T01:intron 30.0%
GTACTAATGCATTCATATTG+TGG + contig261end:31722-31741 MsG0080048281.01.T01:intron 30.0%
TAACTATTGATGCTTTCCAA+GGG - contig261end:31883-31902 None:intergenic 30.0%
TAGGGTAAAAATCAAAGAGA+TGG + contig261end:31846-31865 MsG0080048281.01.T01:intron 30.0%
TATACTAGCAAATATAGAGG+CGG - contig261end:30473-30492 None:intergenic 30.0%
TATTCTGATCTCTGATATGA+AGG + contig261end:29616-29635 MsG0080048281.01.T01:intron 30.0%
TCATGCAAATCAATGCATAA+TGG - contig261end:30287-30306 None:intergenic 30.0%
TCGATACTGTTATCATAACT+TGG - contig261end:32452-32471 None:intergenic 30.0%
TCTTGGAATGAAAATTTGTG+AGG + contig261end:29809-29828 MsG0080048281.01.T01:intron 30.0%
TCTTTGGATTCACATAAAGA+TGG + contig261end:28557-28576 MsG0080048281.01.T01:CDS 30.0%
TGTGAGGATGACAAATTTAA+AGG - contig261end:30323-30342 None:intergenic 30.0%
TGTTGAAAAAAACATCGAAG+TGG - contig261end:31243-31262 None:intergenic 30.0%
TTAACTATTGATGCTTTCCA+AGG - contig261end:31884-31903 None:intergenic 30.0%
TTCATTAAATGATAGGTTCC+AGG + contig261end:33533-33552 MsG0080048281.01.T01:intron 30.0%
TTCTAAGCAGATAGATATTG+TGG - contig261end:33064-33083 None:intergenic 30.0%
! AAAGGAATCCTTTTCATTTC+AGG + contig261end:32187-32206 MsG0080048281.01.T01:intron 30.0%
! AAGATTTTACTTGAACAGAG+AGG - contig261end:32164-32183 None:intergenic 30.0%
! AGTGTTTCTATAAGCTATCT+TGG + contig261end:30917-30936 MsG0080048281.01.T01:intron 30.0%
! TCAAGACTTTCTGAATTTTG+TGG + contig261end:29655-29674 MsG0080048281.01.T01:CDS 30.0%
! TGTTCTTATTTGTCTCACTT+TGG + contig261end:33125-33144 MsG0080048281.01.T01:intron 30.0%
! TTGATTTTTACCCTAGCTAA+AGG - contig261end:31841-31860 None:intergenic 30.0%
! TTTTCACACAGATAAATGTG+AGG - contig261end:30339-30358 None:intergenic 30.0%
! TTTTTCTCCTTTCTTGATTG+AGG - contig261end:30046-30065 None:intergenic 30.0%
!! ATTTTGCTATCAAACCAATG+TGG - contig261end:29393-29412 None:intergenic 30.0%
!! CAGTTCTTTAATTTTGTCAG+AGG + contig261end:32425-32444 MsG0080048281.01.T01:intron 30.0%
!! CTAATTTTAATGCCCAACTT+TGG + contig261end:29704-29723 MsG0080048281.01.T01:intron 30.0%
!! TTGGTTTTCTGAACCAAATT+AGG + contig261end:30668-30687 MsG0080048281.01.T01:intron 30.0%
!! TTGTTTTGTTATGGTCATGT+TGG + contig261end:28763-28782 MsG0080048281.01.T01:intron 30.0%
!!! ATTTTTTTGAGGCAACAAGA+GGG - contig261end:32969-32988 None:intergenic 30.0%
!!! TGTTTTGATTAAGACCATGT+TGG + contig261end:30649-30668 MsG0080048281.01.T01:intron 30.0%
AAAACTGCAAGAGTAGTTTC+CGG - contig261end:28386-28405 None:intergenic 35.0%
AAAATGAGAAAGAACAGGCA+TGG - contig261end:33008-33027 None:intergenic 35.0%
AAAGGCCTAAATGGTTCAAA+GGG - contig261end:32577-32596 None:intergenic 35.0%
AAATGAGAAAGAACAGGCAT+GGG - contig261end:33007-33026 None:intergenic 35.0%
AACAAAGTGCGCATGAAATT+AGG - contig261end:33325-33344 None:intergenic 35.0%
AATAAGCATAACTCTGCCAT+TGG - contig261end:28690-28709 None:intergenic 35.0%
AATAATCTCAACTGCTTTGG+TGG + contig261end:32816-32835 MsG0080048281.01.T01:intron 35.0%
AATGTTGTGTTTACGAGGAT+CGG + contig261end:28965-28984 MsG0080048281.01.T01:intron 35.0%
ACCAATTTATCATCAACGCA+AGG - contig261end:30589-30608 None:intergenic 35.0%
ACCTTCTACATAGAGTTCAA+AGG + contig261end:28904-28923 MsG0080048281.01.T01:intron 35.0%
ATAATCTCAACTGCTTTGGT+GGG + contig261end:32817-32836 MsG0080048281.01.T01:intron 35.0%
ATAGATTGTGCCTAAAGTTC+TGG - contig261end:33354-33373 None:intergenic 35.0%
ATCCCTTATTCAAGCTTCAT+TGG + contig261end:33035-33054 MsG0080048281.01.T01:intron 35.0%
ATGCTTTGATTCAATTGGAC+TGG + contig261end:33157-33176 MsG0080048281.01.T01:intron 35.0%
CAAAGTGAATTTATTTGGGG+AGG - contig261end:32652-32671 None:intergenic 35.0%
CAATGACAATATAGATGCTG+TGG + contig261end:30745-30764 MsG0080048281.01.T01:intron 35.0%
CCTTCTACATAGAGTTCAAA+GGG + contig261end:28905-28924 MsG0080048281.01.T01:intron 35.0%
CGGGTAAATCTCAAATCAAA+AGG - contig261end:33248-33267 None:intergenic 35.0%
CTTGCAGATTATTGATGTTC+TGG + contig261end:30227-30246 MsG0080048281.01.T01:intron 35.0%
GAATTAAGAGTCTGACGAAA+TGG - contig261end:32217-32236 None:intergenic 35.0%
GAGAAATTTGATGAGAACTG+TGG - contig261end:32604-32623 None:intergenic 35.0%
GATAATTGCATCCTTTAGCT+AGG + contig261end:31827-31846 MsG0080048281.01.T01:intron 35.0%
GGTGAATTGTTATGCATTTG+CGG + contig261end:29196-29215 MsG0080048281.01.T01:intron 35.0%
GTAGTATGCTCTATGAATCA+CGG - contig261end:28723-28742 None:intergenic 35.0%
GTGACCTATTTGATCTTTCA+TGG + contig261end:30497-30516 MsG0080048281.01.T01:intron 35.0%
GTTAGGAGGCTTAATCAATT+AGG + contig261end:31154-31173 MsG0080048281.01.T01:intron 35.0%
GTTTGAATCCAAATCGTTGA+TGG - contig261end:31201-31220 None:intergenic 35.0%
TACTTTGGTCATCATAAGCT+AGG + contig261end:32780-32799 MsG0080048281.01.T01:intron 35.0%
TCCCTTATTCAAGCTTCATT+GGG + contig261end:33036-33055 MsG0080048281.01.T01:intron 35.0%
TCTTTCGTTAAAAGCTTCGT+TGG + contig261end:28505-28524 MsG0080048281.01.T01:intron 35.0%
TGCTTTGATTCAATTGGACT+GGG + contig261end:33158-33177 MsG0080048281.01.T01:intron 35.0%
TGTACTTTGCTGCTGATAAT+TGG + contig261end:29286-29305 MsG0080048281.01.T01:intron 35.0%
TTAATACGGTCTCTAACGTT+AGG + contig261end:31137-31156 MsG0080048281.01.T01:intron 35.0%
TTGTGGATTTATATCGTGAC+AGG + contig261end:33483-33502 MsG0080048281.01.T01:intron 35.0%
TTTAGTCTGAATTCCAGACT+TGG + contig261end:31347-31366 MsG0080048281.01.T01:intron 35.0%
! ACTTGCCTCAATGACTTTTA+TGG - contig261end:33464-33483 None:intergenic 35.0%
! ATAAGTTTTGCATGGCTGTT+TGG - contig261end:29082-29101 None:intergenic 35.0%
! CGGAGAAGTTTCAATTTGTT+TGG + contig261end:30163-30182 MsG0080048281.01.T01:intron 35.0%
! CTACTAGCATAAGTTTTGCA+TGG - contig261end:29090-29109 None:intergenic 35.0%
! GAATTTTGCAGTTTCAGTGT+CGG - contig261end:28171-28190 None:intergenic 35.0%
! GGGTTTTTGTAGTGTATCTT+TGG + contig261end:28541-28560 MsG0080048281.01.T01:intron 35.0%
! GTTTTGTCCTCAATCAAGAA+AGG + contig261end:30036-30055 MsG0080048281.01.T01:intron 35.0%
! TAAGTTTTGCATGGCTGTTT+GGG - contig261end:29081-29100 None:intergenic 35.0%
! TTCATTCGGATGAAGTACTT+TGG + contig261end:32765-32784 MsG0080048281.01.T01:intron 35.0%
! TTCCTTGTACTTGTTCCTTT+TGG + contig261end:32936-32955 MsG0080048281.01.T01:intron 35.0%
! TTGATAGCAAAATTGCACCA+TGG + contig261end:29400-29419 MsG0080048281.01.T01:intron 35.0%
! TTTGGTTCAGAAAACCAACA+TGG - contig261end:30666-30685 None:intergenic 35.0%
! TTTTAGTGTGGTTGAATGTG+CGG + contig261end:30143-30162 MsG0080048281.01.T01:intron 35.0%
!! AAAGATGACATGATGGACTT+AGG + contig261end:30782-30801 MsG0080048281.01.T01:intron 35.0%
!! AAGATGACATGATGGACTTA+GGG + contig261end:30783-30802 MsG0080048281.01.T01:intron 35.0%
!! GTATTGTTTCTTTTGCATGC+AGG + contig261end:30414-30433 MsG0080048281.01.T01:intron 35.0%
!! GTTATGATAACAGTATCGAC+AGG + contig261end:32453-32472 MsG0080048281.01.T01:intron 35.0%
!! TCCTTGCGTTGATGATAAAT+TGG + contig261end:30585-30604 MsG0080048281.01.T01:intron 35.0%
!! TGATTGGAACATTAGCCTTA+AGG + contig261end:33573-33592 MsG0080048281.01.T01:CDS 35.0%
!!! GATTTTTTTGAGGCAACAAG+AGG - contig261end:32970-32989 None:intergenic 35.0%
!!! TGGATCAATTTTTGGCATCT+TGG + contig261end:29549-29568 MsG0080048281.01.T01:intron 35.0%
AAAGTCATTGAGGCAAGTTG+TGG + contig261end:33466-33485 MsG0080048281.01.T01:intron 40.0%
AACACAACATTCATGGACCT+AGG - contig261end:28956-28975 None:intergenic 40.0%
AACCCAATCTCCATTTCCAT+CGG - contig261end:29439-29458 None:intergenic 40.0%
ACCATTACGCACTTAGACAA+TGG - contig261end:29861-29880 None:intergenic 40.0%
ACCATTGTCTAAGTGCGTAA+TGG + contig261end:29857-29876 MsG0080048281.01.T01:intron 40.0%
ACTCCTGATACCATTGTTCA+GGG + contig261end:33403-33422 MsG0080048281.01.T01:CDS 40.0%
AGAGCATACTACAAGCTGTT+AGG + contig261end:28731-28750 MsG0080048281.01.T01:intron 40.0%
ATAGATGCTGTGGGAAAAGT+GGG + contig261end:30755-30774 MsG0080048281.01.T01:intron 40.0%
ATAGCACACATAGAGCTTGT+TGG - contig261end:29137-29156 None:intergenic 40.0%
ATCCGATGGAAATGGAGATT+GGG + contig261end:29434-29453 MsG0080048281.01.T01:CDS 40.0%
CAACAACAAAAAATACGGCG+AGG + contig261end:31258-31277 MsG0080048281.01.T01:intron 40.0%
CAACTGTCTAATACTTCAGC+AGG - contig261end:31597-31616 None:intergenic 40.0%
CATGGCCATAAAAGTCATTG+AGG + contig261end:33456-33475 MsG0080048281.01.T01:intron 40.0%
CCATGAATGTTGTGTTTACG+AGG + contig261end:28960-28979 MsG0080048281.01.T01:intron 40.0%
CCCCAATGAAGCTTGAATAA+GGG - contig261end:33040-33059 None:intergenic 40.0%
CCCTTATTCAAGCTTCATTG+GGG + contig261end:33037-33056 MsG0080048281.01.T01:intron 40.0%
CCCTTTGAACTCTATGTAGA+AGG - contig261end:28908-28927 None:intergenic 40.0%
CCTCGTAAACACAACATTCA+TGG - contig261end:28963-28982 None:intergenic 40.0%
GAAAAGATAGTTCACTTCGG+CGG - contig261end:31570-31589 None:intergenic 40.0%
GAAAGGCCTAAATGGTTCAA+AGG - contig261end:32578-32597 None:intergenic 40.0%
GAAATGGGAGTGAAGAAAGA+AGG - contig261end:28308-28327 None:intergenic 40.0%
GAAGTTAAACGCTATGGCAT+GGG - contig261end:28231-28250 None:intergenic 40.0%
GACAAAACATACCACCACAT+GGG - contig261end:30265-30284 None:intergenic 40.0%
GCTTTGATTCAATTGGACTG+GGG + contig261end:33159-33178 MsG0080048281.01.T01:intron 40.0%
GGCAGAGTTATGCTTATTGA+TGG + contig261end:28692-28711 MsG0080048281.01.T01:CDS 40.0%
GGGCTATAAAGATGACATGA+TGG + contig261end:30775-30794 MsG0080048281.01.T01:intron 40.0%
GTAAACACTGAACACGACAA+GGG - contig261end:30372-30391 None:intergenic 40.0%
GTAGAAGCAGATGATGTGAT+TGG + contig261end:33557-33576 MsG0080048281.01.T01:CDS 40.0%
GTATTGAAGTCCCTGAACAA+TGG - contig261end:33416-33435 None:intergenic 40.0%
GTCCAAAAGGAACAAGTACA+AGG - contig261end:32941-32960 None:intergenic 40.0%
GTGCCTCCAGAAATTAGTTA+CGG + contig261end:28614-28633 MsG0080048281.01.T01:CDS 40.0%
TAATCTCAACTGCTTTGGTG+GGG + contig261end:32818-32837 MsG0080048281.01.T01:intron 40.0%
TACCTTAGCACCAATAGCAA+GGG - contig261end:32707-32726 None:intergenic 40.0%
TACTCCTGATACCATTGTTC+AGG + contig261end:33402-33421 MsG0080048281.01.T01:CDS 40.0%
TATAGATGCTGTGGGAAAAG+TGG + contig261end:30754-30773 MsG0080048281.01.T01:intron 40.0%
TCCCCAATGAAGCTTGAATA+AGG - contig261end:33041-33060 None:intergenic 40.0%
TCTGTCCCTTTGAACCATTT+AGG + contig261end:32569-32588 MsG0080048281.01.T01:intron 40.0%
TGAACAATGGTATCAGGAGT+AGG - contig261end:33403-33422 None:intergenic 40.0%
TGAAGTTAAACGCTATGGCA+TGG - contig261end:28232-28251 None:intergenic 40.0%
TGATCGTTGTTGATCCACAT+TGG + contig261end:29376-29395 MsG0080048281.01.T01:intron 40.0%
TGTAAACACTGAACACGACA+AGG - contig261end:30373-30392 None:intergenic 40.0%
TGTTTGAAGGCCAGAACTTT+AGG + contig261end:33341-33360 MsG0080048281.01.T01:intron 40.0%
TTTGGTCATCATAAGCTAGG+CGG + contig261end:32783-32802 MsG0080048281.01.T01:intron 40.0%
! ATACCTCAAAGCATCCATCA+AGG + contig261end:33432-33451 MsG0080048281.01.T01:CDS 40.0%
! CTCAATGACTTTTATGGCCA+TGG - contig261end:33458-33477 None:intergenic 40.0%
! GGCATTGAAGTTAAACGCTA+TGG - contig261end:28237-28256 None:intergenic 40.0%
! TAGCACACATAGAGCTTGTT+GGG - contig261end:29136-29155 None:intergenic 40.0%
! TTCATGCGCACTTTGTTTGA+AGG + contig261end:33328-33347 MsG0080048281.01.T01:intron 40.0%
!! AGATGACATGATGGACTTAG+GGG + contig261end:30784-30803 MsG0080048281.01.T01:intron 40.0%
!! CGAAAGGTTCTAGACTTTGA+AGG + contig261end:32852-32871 MsG0080048281.01.T01:intron 40.0%
!! GTTAAAAGCTTCGTTGGCTT+TGG + contig261end:28511-28530 MsG0080048281.01.T01:intron 40.0%
!! TCAGTGACATTTCTAGCTGA+AGG + contig261end:32887-32906 MsG0080048281.01.T01:intron 40.0%
!! TCGTTGGCTTTGGTTTGTTA+GGG + contig261end:28521-28540 MsG0080048281.01.T01:intron 40.0%
!! TTCGTTGGCTTTGGTTTGTT+AGG + contig261end:28520-28539 MsG0080048281.01.T01:intron 40.0%
AAACATACCACCACATGGGA+AGG - contig261end:30261-30280 None:intergenic 45.0%
AACAATGTCACGTCTCTCCT+AGG + contig261end:28936-28955 MsG0080048281.01.T01:intron 45.0%
AACTCTGTTATTCCAGAGCC+TGG + contig261end:32510-32529 MsG0080048281.01.T01:intron 45.0%
ACAATGGTATCAGGAGTAGG+AGG - contig261end:33400-33419 None:intergenic 45.0%
ACATCATCTGCTTCTACACC+TGG - contig261end:33554-33573 None:intergenic 45.0%
AGTCCCTGAACAATGGTATC+AGG - contig261end:33409-33428 None:intergenic 45.0%
ATACGGTCTCTAACGTTAGG+AGG + contig261end:31140-31159 MsG0080048281.01.T01:intron 45.0%
ATTACGCGAGTGTGTTACCT+TGG - contig261end:28449-28468 None:intergenic 45.0%
ATTCATTCCTTCCCATGTGG+TGG + contig261end:30251-30270 MsG0080048281.01.T01:CDS 45.0%
CAAGAGGGCTAAAGTCCAAA+AGG - contig261end:32954-32973 None:intergenic 45.0%
CAAGTACAAGGAATCACCCA+AGG - contig261end:32929-32948 None:intergenic 45.0%
CAGAAAGTCTTGATGAGGGT+GGG - contig261end:29648-29667 None:intergenic 45.0%
CAGAGGATCAGGACACTTAA+AGG - contig261end:31404-31423 None:intergenic 45.0%
CAGGTAGTGTTTGACCATGA+TGG + contig261end:30433-30452 MsG0080048281.01.T01:intron 45.0%
CAGTGTAAAGCCAGTATTGC+TGG - contig261end:31427-31446 None:intergenic 45.0%
CATCCGATGGAAATGGAGAT+TGG + contig261end:29433-29452 MsG0080048281.01.T01:CDS 45.0%
CGTGAAGAACGAAGAAGGTT+TGG - contig261end:28415-28434 None:intergenic 45.0%
CTACCTTAGCACCAATAGCA+AGG - contig261end:32708-32727 None:intergenic 45.0%
CTGATCAGCCATCAACGATT+TGG + contig261end:31190-31209 MsG0080048281.01.T01:intron 45.0%
GATGAGAACTGTGGAGAGAA+AGG - contig261end:32595-32614 None:intergenic 45.0%
GCAGCTCCGTAACTAATTTC+TGG - contig261end:28623-28642 None:intergenic 45.0%
GGAATTCATTCCTTCCCATG+TGG + contig261end:30248-30267 MsG0080048281.01.T01:CDS 45.0%
GGACAAAACATACCACCACA+TGG - contig261end:30266-30285 None:intergenic 45.0%
GGTAACAGAACCAATGTGCA+CGG - contig261end:28651-28670 None:intergenic 45.0%
GTAACAGAACCAATGTGCAC+GGG - contig261end:28650-28669 None:intergenic 45.0%
TCAGAAAGTCTTGATGAGGG+TGG - contig261end:29649-29668 None:intergenic 45.0%
TCTACAAGCTGTTGATGCAC+CGG + contig261end:32044-32063 MsG0080048281.01.T01:intron 45.0%
TCTAGCACATCCGATGGAAA+TGG + contig261end:29426-29445 MsG0080048281.01.T01:CDS 45.0%
TGCTGGAGTTTCTACTCCTT+GGG + contig261end:32910-32929 MsG0080048281.01.T01:intron 45.0%
TGGGGCATAACAAGAACGAA+AGG + contig261end:32836-32855 MsG0080048281.01.T01:intron 45.0%
TGTGGAGAGAAAGGCCTAAA+TGG - contig261end:32586-32605 None:intergenic 45.0%
TTACATCTCTCTAAGCAGCC+AGG - contig261end:32531-32550 None:intergenic 45.0%
TTAGTGTGCCAAGATACCAC+CGG - contig261end:32066-32085 None:intergenic 45.0%
! CTAAGACTGTGTGTTGCTAC+TGG - contig261end:29917-29936 None:intergenic 45.0%
! GATGGGAATCTTTTCACCCT+TGG + contig261end:31864-31883 MsG0080048281.01.T01:intron 45.0%
! GCTCCGTAACTAATTTCTGG+AGG - contig261end:28620-28639 None:intergenic 45.0%
!! ACATTTCTAGCTGAAGGTGC+TGG + contig261end:32893-32912 MsG0080048281.01.T01:intron 45.0%
!! CCTTAAGGAGTGTTGATGCT+GGG + contig261end:33588-33607 MsG0080048281.01.T01:CDS 45.0%
!! GATGACATGATGGACTTAGG+GGG + contig261end:30785-30804 MsG0080048281.01.T01:intron 45.0%
!! GCTATTGGTGCTAAGGTAGT+AGG + contig261end:32709-32728 MsG0080048281.01.T01:intron 45.0%
!! TTTTATGGCCATGGCCTTGA+TGG - contig261end:33449-33468 None:intergenic 45.0%
!!! TATTTTGATTATTTTATTTT+TGG + contig261end:30558-30577 MsG0080048281.01.T01:intron 5.0%
AAAGCCAGTATTGCTGGCAG+AGG - contig261end:31421-31440 None:intergenic 50.0%
AACTTCTCCAACCACCGGAA+CGG + contig261end:28592-28611 MsG0080048281.01.T01:CDS 50.0%
AAGGGCAGGAGCTTTGCTTA+AGG - contig261end:32689-32708 None:intergenic 50.0%
ACTGCAAGAGTAGTTTCCGG+CGG - contig261end:28383-28402 None:intergenic 50.0%
AGCGGATGAAGCCCTAAAGT+TGG + contig261end:31060-31079 MsG0080048281.01.T01:intron 50.0%
AGCTTTGCTTAAGGTGGGCA+GGG - contig261end:32680-32699 None:intergenic 50.0%
AGTATTGCTGGCAGAGGATC+AGG - contig261end:31415-31434 None:intergenic 50.0%
CCCAGCATCAACACTCCTTA+AGG - contig261end:33591-33610 None:intergenic 50.0%
GACGATTGCTCTTGTACGCA+GGG - contig261end:33378-33397 None:intergenic 50.0%
GAGTGTGTTACCTTGGAGAG+TGG - contig261end:28442-28461 None:intergenic 50.0%
GCAGGAGCTTTGCTTAAGGT+GGG - contig261end:32685-32704 None:intergenic 50.0%
GGGAGTGAAGAAAGAAGGAG+TGG - contig261end:28303-28322 None:intergenic 50.0%
GGTGGTATCTTGGCACACTA+AGG + contig261end:32065-32084 MsG0080048281.01.T01:intron 50.0%
GTGCTGGAGTTTCTACTCCT+TGG + contig261end:32909-32928 MsG0080048281.01.T01:intron 50.0%
TATCGGTGCAAGAGCTTGGT+GGG - contig261end:31933-31952 None:intergenic 50.0%
TCGGATGTGCTAGATGACCA+TGG - contig261end:29420-29439 None:intergenic 50.0%
TCTCCCAAATGCCTCCTTAG+CGG + contig261end:31042-31061 MsG0080048281.01.T01:intron 50.0%
TCTGCAACTTCTCCAACCAC+CGG + contig261end:28587-28606 MsG0080048281.01.T01:CDS 50.0%
TGAATGCGACGGAGAGGAAA+TGG - contig261end:28346-28365 None:intergenic 50.0%
TGATCCTCTGCCAGCAATAC+TGG + contig261end:31414-31433 MsG0080048281.01.T01:intron 50.0%
TGGTCATCTAGCACATCCGA+TGG + contig261end:29420-29439 MsG0080048281.01.T01:CDS 50.0%
TGGTTATCGGTGCAAGAGCT+TGG - contig261end:31937-31956 None:intergenic 50.0%
TGTTACCAATGCCGAAGCTG+CGG + contig261end:28664-28683 MsG0080048281.01.T01:CDS 50.0%
TTAGCACCAATAGCAAGGGC+AGG - contig261end:32703-32722 None:intergenic 50.0%
TTATCGGTGCAAGAGCTTGG+TGG - contig261end:31934-31953 None:intergenic 50.0%
! AAAGCTCCTGCCCTTGCTAT+TGG + contig261end:32694-32713 MsG0080048281.01.T01:intron 50.0%
! AGCTCTTGCACCGATAACCA+AGG + contig261end:31937-31956 MsG0080048281.01.T01:intron 50.0%
! CAAAGCATCCATCAAGGCCA+TGG + contig261end:33438-33457 MsG0080048281.01.T01:CDS 50.0%
! GAACGCACGCACCTTTGAAA+TGG - contig261end:28202-28221 None:intergenic 50.0%
! TGCAGTTTCAGTGTCGGAAC+CGG - contig261end:28165-28184 None:intergenic 50.0%
! TGGCCTTGATGGATGCTTTG+AGG - contig261end:33438-33457 None:intergenic 50.0%
! TTGATGCACCGGTGGTATCT+TGG + contig261end:32055-32074 MsG0080048281.01.T01:intron 50.0%
!! AATTTCTGGAGGCACCGTTC+CGG - contig261end:28609-28628 None:intergenic 50.0%
!! CATCCGCTAAGGAGGCATTT+GGG - contig261end:31048-31067 None:intergenic 50.0%
!! CTTTAGGGCTTCATCCGCTA+AGG - contig261end:31059-31078 None:intergenic 50.0%
!! GAGTGTTGATGCTGGGTACA+AGG + contig261end:33595-33614 MsG0080048281.01.T01:CDS 50.0%
!! GCCTTAAGGAGTGTTGATGC+TGG + contig261end:33587-33606 MsG0080048281.01.T01:CDS 50.0%
!! TCATCCGCTAAGGAGGCATT+TGG - contig261end:31049-31068 None:intergenic 50.0%
!! TGCCCTTGCTATTGGTGCTA+AGG + contig261end:32702-32721 MsG0080048281.01.T01:intron 50.0%
ACAAGCTGTTGATGCACCGG+TGG + contig261end:32047-32066 MsG0080048281.01.T01:intron 55.0%
GAGCTTTGCTTAAGGTGGGC+AGG - contig261end:32681-32700 None:intergenic 55.0%
GGACGATTGCTCTTGTACGC+AGG - contig261end:33379-33398 None:intergenic 55.0%
GGCAGGAGCTTTGCTTAAGG+TGG - contig261end:32686-32705 None:intergenic 55.0%
GTGCGCGTGAAGAACGAAGA+AGG - contig261end:28420-28439 None:intergenic 55.0%
TAGGGCTTCATCCGCTAAGG+AGG - contig261end:31056-31075 None:intergenic 55.0%
TTGCTTAAGGTGGGCAGGGA+GGG - contig261end:32676-32695 None:intergenic 55.0%
TTTGCTTAAGGTGGGCAGGG+AGG - contig261end:32677-32696 None:intergenic 55.0%
! AGTTTCAGTGTCGGAACCGG+GGG - contig261end:28162-28181 None:intergenic 55.0%
! ATCGGTGCAAGAGCTTGGTG+GGG - contig261end:31932-31951 None:intergenic 55.0%
! CAGTTTCAGTGTCGGAACCG+GGG - contig261end:28163-28182 None:intergenic 55.0%
! GCAGTTTCAGTGTCGGAACC+GGG - contig261end:28164-28183 None:intergenic 55.0%
!! TGGTGGTGGTGTGAATGCGA+CGG - contig261end:28357-28376 None:intergenic 55.0%
AATGCCGAAGCTGCGGCCAA+TGG + contig261end:28671-28690 MsG0080048281.01.T01:CDS 60.0%
ATTGGCCGCAGCTTCGGCAT+TGG - contig261end:28672-28691 None:intergenic 60.0%
CACTTCGGCGGCATAGAGCA+TGG - contig261end:31558-31577 None:intergenic 60.0%
CTCTCTAAGCAGCCAGGCTC+TGG - contig261end:32525-32544 None:intergenic 60.0%
GCAAGAGTAGTTTCCGGCGG+CGG - contig261end:28380-28399 None:intergenic 60.0%
GCTGCTCAACCCGTGCACAT+TGG + contig261end:28638-28657 MsG0080048281.01.T01:CDS 60.0%
GTGGTGTGAATGCGACGGAG+AGG - contig261end:28352-28371 None:intergenic 60.0%
TCTGCCATTGGCCGCAGCTT+CGG - contig261end:28678-28697 None:intergenic 60.0%
TTCACGCGCACCACTCTCCA+AGG + contig261end:28429-28448 MsG0080048281.01.T01:intron 60.0%
! GTTTCAGTGTCGGAACCGGG+GGG - contig261end:28161-28180 None:intergenic 60.0%
AGAGTAGTTTCCGGCGGCGG+TGG - contig261end:28377-28396 None:intergenic 65.0%
!! TTCTGGAGGCACCGTTCCGG+TGG - contig261end:28606-28625 None:intergenic 65.0%
GTAGTTTCCGGCGGCGGTGG+TGG - contig261end:28374-28393 None:intergenic 70.0%
! CAGTGTCGGAACCGGGGGGA+GGG - contig261end:28157-28176 None:intergenic 70.0%
! TCAGTGTCGGAACCGGGGGG+AGG - contig261end:28158-28177 None:intergenic 70.0%
!! GGAGGCACCGTTCCGGTGGT+TGG - contig261end:28602-28621 None:intergenic 70.0%
CACACCACCACCACCGCCGC+CGG + contig261end:28364-28383 MsG0080048281.01.T01:intron 75.0%
! GTTTCCGGCGGCGGTGGTGG+TGG - contig261end:28371-28390 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
contig261end gene 28149 33643 28149 ID=MsG0080048281.01;Name=MsG0080048281.01
contig261end mRNA 28149 33643 28149 ID=MsG0080048281.01.T01;Parent=MsG0080048281.01;Name=MsG0080048281.01.T01;_AED=0.47;_eAED=0.62;_QI=0|0|0|1|0.37|0.44|9|0|272
contig261end exon 28149 28292 28149 ID=MsG0080048281.01.T01:exon:7883;Parent=MsG0080048281.01.T01
contig261end exon 28542 28747 28542 ID=MsG0080048281.01.T01:exon:7882;Parent=MsG0080048281.01.T01
contig261end exon 29407 29489 29407 ID=MsG0080048281.01.T01:exon:7881;Parent=MsG0080048281.01.T01
contig261end exon 29638 29696 29638 ID=MsG0080048281.01.T01:exon:7880;Parent=MsG0080048281.01.T01
contig261end exon 30234 30272 30234 ID=MsG0080048281.01.T01:exon:7879;Parent=MsG0080048281.01.T01
contig261end exon 30436 30454 30436 ID=MsG0080048281.01.T01:exon:7878;Parent=MsG0080048281.01.T01
contig261end exon 32209 32262 32209 ID=MsG0080048281.01.T01:exon:7877;Parent=MsG0080048281.01.T01
contig261end exon 33350 33468 33350 ID=MsG0080048281.01.T01:exon:7876;Parent=MsG0080048281.01.T01
contig261end exon 33548 33643 33548 ID=MsG0080048281.01.T01:exon:7875;Parent=MsG0080048281.01.T01
contig261end CDS 28149 28292 28149 ID=MsG0080048281.01.T01:cds;Parent=MsG0080048281.01.T01
contig261end CDS 28542 28747 28542 ID=MsG0080048281.01.T01:cds;Parent=MsG0080048281.01.T01
contig261end CDS 29407 29489 29407 ID=MsG0080048281.01.T01:cds;Parent=MsG0080048281.01.T01
contig261end CDS 29638 29696 29638 ID=MsG0080048281.01.T01:cds;Parent=MsG0080048281.01.T01
contig261end CDS 30234 30272 30234 ID=MsG0080048281.01.T01:cds;Parent=MsG0080048281.01.T01
contig261end CDS 30436 30454 30436 ID=MsG0080048281.01.T01:cds;Parent=MsG0080048281.01.T01
contig261end CDS 32209 32262 32209 ID=MsG0080048281.01.T01:cds;Parent=MsG0080048281.01.T01
contig261end CDS 33350 33468 33350 ID=MsG0080048281.01.T01:cds;Parent=MsG0080048281.01.T01
contig261end CDS 33548 33643 33548 ID=MsG0080048281.01.T01:cds;Parent=MsG0080048281.01.T01
Gene Sequence

>MsG0080048281.01.T01

ATGCTCCCTCCCCCCGGTTCCGACACTGAAACTGCAAAATTCATTCTTTTCCATTTCAAAGGTGCGTGCGTTCTCTTCTCCCATGCCATAGCGTTTAACTTCAATGCCATTATTCTTTCTACTCTATTCAAATGGCATGCTACTGGTTTTTGTAGTGTATCTTTGGATTCACATAAAGATGGAGTTGTTTCTGCAACTTCTCCAACCACCGGAACGGTGCCTCCAGAAATTAGTTACGGAGCTGCTCAACCCGTGCACATTGGTTCTGTTACCAATGCCGAAGCTGCGGCCAATGGCAGAGTTATGCTTATTGATGGCACGTCCGTGATTCATAGAGCATACTACAAGCTCAAAATTGCACCATGGTCATCTAGCACATCCGATGGAAATGGAGATTGGGTTTTGACAATTTTTTCAGCACTATCATTTGTAAGGCATTTCCCACCCTCATCAAGACTTTCTGAATTTTGTGGAAAAATATTAACTTTTCTGATTATTGATGTTCTGGAATTCATTCCTTCCCATGTGGTGGTAGTGTTTGACCATGATGGAATTCCATTTCGTCAGACTCTTAATTCATCAAAACAAAGTTTTACTGCTAAAGGCCAGAACTTTAGGCACAATCTATACCCTGCGTACAAGAGCAATCGTCCTCCTACTCCTGATACCATTGTTCAGGGACTTCAATACCTCAAAGCATCCATCAAGGCCATGGCCATAAAAGTTCCAGGTGTAGAAGCAGATGATGTGATTGGAACATTAGCCTTAAGGAGTGTTGATGCTGGGTACAAGGTGATGTCTTTAATAGTTTCAAGATAG
Protein sequence

>MsG0080048281.01.T01

MLPPPGSDTETAKFILFHFKGACVLFSHAIAFNFNAIILSTLFKWHATGFCSVSLDSHKDGVVSATSPTTGTVPPEISYGAAQPVHIGSVTNAEAAANGRVMLIDGTSVIHRAYYKLKIAPWSSSTSDGNGDWVLTIFSALSFVRHFPPSSRLSEFCGKILTFLIIDVLEFIPSHVVVVFDHDGIPFRQTLNSSKQSFTAKGQNFRHNLYPAYKSNRPPTPDTIVQGLQYLKASIKAMAIKVPGVEADDVIGTLALRSVDAGYKVMSLIVSR*