AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005817.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005817.01.T01 MTR_1g107450 97.154 246 7 0 1 246 1 246 2.48e-172 479
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005817.01.T01 AT2G15290 67.713 223 59 2 27 246 47 259 4.35e-97 289

Find 90 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCATTCATTTCAGTGTTT+TGG 0.190891 1:-96544075 MsG0180005817.01.T01:CDS
GATTAGGTAGCTTAGGGTTT+TGG 0.244550 1:-96544210 MsG0180005817.01.T01:CDS
GGGATGGGATCTGCTATTCT+TGG 0.261286 1:-96543659 MsG0180005817.01.T01:CDS
CTCTGCCAACCCATATTATC+AGG 0.265678 1:-96543591 MsG0180005817.01.T01:CDS
GTCTACAGTTTGGACATGTT+TGG 0.295925 1:-96542448 MsG0180005817.01.T01:three_prime_UTR
GGAGCGATTCCCTGATAATA+TGG 0.296780 1:+96543581 None:intergenic
TGGTATAGCATTGAACCTTT+TGG 0.302115 1:-96543681 MsG0180005817.01.T01:CDS
TTCAAAATACTTGTTTGATA+AGG 0.313176 1:-96542290 MsG0180005817.01.T01:three_prime_UTR
TTGGTGCAGGTAAAACTTAT+TGG 0.316458 1:-96543524 MsG0180005817.01.T01:intron
TCAAAATACTTGTTTGATAA+GGG 0.330644 1:-96542289 MsG0180005817.01.T01:three_prime_UTR
TCTACAGTTTGGACATGTTT+GGG 0.351059 1:-96542447 MsG0180005817.01.T01:three_prime_UTR
TTTGAGTTCTAGTAGTTTAC+GGG 0.363487 1:+96544705 None:intergenic
GAAGAACTGTTCAATTTAAG+AGG 0.370176 1:+96544496 None:intergenic
CAATCCTTTCTCATTTCCTT+GGG 0.382936 1:-96542795 MsG0180005817.01.T01:CDS
CTAACGCCGGCACCGTGTTC+CGG 0.385142 1:-96544610 MsG0180005817.01.T01:CDS
AGAAATGAAGGAACTGAAAG+AGG 0.389344 1:+96544471 None:intergenic
ACAATCCTTTCTCATTTCCT+TGG 0.393630 1:-96542796 MsG0180005817.01.T01:CDS
CTTACATTAGACAAGTTATG+AGG 0.396140 1:+96542409 None:intergenic
TGTGTAGGTGGCGAAGAGAT+TGG 0.399741 1:-96544257 MsG0180005817.01.T01:intron
TTCAAGCGATTAGGTAGCTT+AGG 0.400195 1:-96544217 MsG0180005817.01.T01:CDS
GCAGTTTACTGTCTACAGTT+TGG 0.416301 1:-96542458 MsG0180005817.01.T01:three_prime_UTR
CACTCCTTCCAACGAAGAAT+CGG 0.416433 1:-96544389 MsG0180005817.01.T01:CDS
CCTTCATTTCTCATCGTCAA+TGG 0.425680 1:-96544459 MsG0180005817.01.T01:CDS
ACCGTGTTCCGGCAGGTTCA+CGG 0.430996 1:-96544599 MsG0180005817.01.T01:CDS
CCTTATGCAAACTTCAGAAA+TGG 0.431667 1:+96542715 None:intergenic
GTAGTTAAAAGCTTACAAAA+TGG 0.434722 1:-96543701 MsG0180005817.01.T01:CDS
GCGAGGCATTTCAAGCGATT+AGG 0.439777 1:-96544226 MsG0180005817.01.T01:CDS
CCATTTCTGAAGTTTGCATA+AGG 0.443202 1:-96542715 MsG0180005817.01.T01:intron
TCGACCAGTGATGCAACATC+AGG 0.443984 1:-96542338 MsG0180005817.01.T01:three_prime_UTR
AAACCCTGATGTTGCATCAC+TGG 0.444763 1:+96542334 None:intergenic
TGCACAGATTCTTTACAACT+TGG 0.451047 1:+96542551 None:intergenic
GGGAAGACGAGGGACGGAAA+TGG 0.461563 1:+96544555 None:intergenic
AAGACATCTAATGCGAGAAC+AGG 0.464297 1:+96543548 None:intergenic
GCTGTAGCATAAAACGTTGC+CGG 0.476279 1:+96544112 None:intergenic
TCAAGCGATTAGGTAGCTTA+GGG 0.479000 1:-96544216 MsG0180005817.01.T01:CDS
GGATGGGATCTGCTATTCTT+GGG 0.479726 1:-96543658 MsG0180005817.01.T01:CDS
TTTAAGACCCTCTTCGTTGG+TGG 0.494683 1:-96542590 MsG0180005817.01.T01:CDS
TAGAACTCAAAAGTGAGAAT+CGG 0.494869 1:-96544693 MsG0180005817.01.T01:five_prime_UTR
CGCCGGCACCGTGTTCCGGC+AGG 0.498649 1:-96544606 MsG0180005817.01.T01:CDS
CTTCAGCAATTCAAGATCCA+TGG 0.505559 1:-96542497 MsG0180005817.01.T01:three_prime_UTR
AACCTGCCGGAACACGGTGC+CGG 0.519126 1:+96544604 None:intergenic
TATTATCAGGGAATCGCTCC+TGG 0.521565 1:-96543578 MsG0180005817.01.T01:CDS
GCCGTGAACCTGCCGGAACA+CGG 0.522890 1:+96544598 None:intergenic
CTTGGGATGCAAGCCACAGT+TGG 0.527632 1:-96543641 MsG0180005817.01.T01:CDS
TACTTGTTTGATAAGGGATG+CGG 0.529460 1:-96542283 MsG0180005817.01.T01:three_prime_UTR
GAAATGAAGGAACTGAAAGA+GGG 0.531980 1:+96544472 None:intergenic
AGTTGGATTCTTAGTTGCAA+AGG 0.532071 1:-96543624 MsG0180005817.01.T01:CDS
TTCAATTTAAGAGGGAGTGA+GGG 0.544352 1:+96544505 None:intergenic
GAGCGATTCCCTGATAATAT+GGG 0.545660 1:+96543582 None:intergenic
AGAAGAAGCGGTTACTGTGA+AGG 0.546077 1:+96544429 None:intergenic
GAAGCCCAAGGAAATGAGAA+AGG 0.552017 1:+96542791 None:intergenic
TAGCAGATCCCATCCCCAAA+AGG 0.554594 1:+96543666 None:intergenic
CCATTGACGATGAGAAATGA+AGG 0.558196 1:+96544459 None:intergenic
GAAGAAGCGGTTACTGTGAA+GGG 0.558789 1:+96544430 None:intergenic
GCGTAGTTGTTCGATTTCTG+TGG 0.559647 1:+96544646 None:intergenic
CCACTGTGATAAACTGCCCA+TGG 0.562764 1:+96542480 None:intergenic
TTTAACTACATCAGATCGAG+GGG 0.565750 1:+96543715 None:intergenic
TGGCGCCGCCGTGAACCTGC+CGG 0.569949 1:+96544591 None:intergenic
CTGATAATATGGGTTGGCAG+AGG 0.570282 1:+96543592 None:intergenic
TGCAGAGGATTGAGAAGAAG+CGG 0.571740 1:+96544417 None:intergenic
AAGAACTGTTCAATTTAAGA+GGG 0.578373 1:+96544497 None:intergenic
AGAATTGTTCGGGGAAGACG+AGG 0.581441 1:+96544544 None:intergenic
TTCAGCAATTCAAGATCCAT+GGG 0.582907 1:-96542496 MsG0180005817.01.T01:three_prime_UTR
CGACCAGTGATGCAACATCA+GGG 0.587764 1:-96542337 MsG0180005817.01.T01:three_prime_UTR
GTTCAATTTAAGAGGGAGTG+AGG 0.594846 1:+96544504 None:intergenic
ATGTCAACCACCAACGAAGA+GGG 0.598818 1:+96542583 None:intergenic
TGTTCGGGGAAGACGAGGGA+CGG 0.600639 1:+96544549 None:intergenic
GCTATATTCGCCTCTCTGAG+AGG 0.604639 1:-96544045 MsG0180005817.01.T01:CDS
TTACATTAGACAAGTTATGA+GGG 0.612322 1:+96542410 None:intergenic
GAAATGGCTGAGATTGAGAG+TGG 0.616067 1:+96544571 None:intergenic
GCGAGAACAGGACTTGAACC+AGG 0.619241 1:+96543560 None:intergenic
CCAGCGAGAAAAGAAGCCCA+AGG 0.620312 1:+96542779 None:intergenic
GGAAGGAGTGAAAGCTGCAG+AGG 0.633093 1:+96544402 None:intergenic
TCAATTTAAGAGGGAGTGAG+GGG 0.636040 1:+96544506 None:intergenic
GATTCCCTGATAATATGGGT+TGG 0.640688 1:+96543586 None:intergenic
AGAAATGGAAGAGCTTCTGA+CGG 0.648983 1:+96542730 None:intergenic
TCTGCCAACCCATATTATCA+GGG 0.650984 1:-96543590 MsG0180005817.01.T01:CDS
GATGTCAACCACCAACGAAG+AGG 0.656315 1:+96542582 None:intergenic
TACCGGAAAAGTGACATCGC+CGG 0.662744 1:-96544131 MsG0180005817.01.T01:CDS
AGAGAGGCGAATATAGCCAA+AGG 0.665331 1:+96544051 None:intergenic
GAATTGTTCGGGGAAGACGA+GGG 0.667717 1:+96544545 None:intergenic
TGCAACTAAGAATCCAACTG+TGG 0.672275 1:+96543628 None:intergenic
AATGGAAGAGCTTCTGACGG+CGG 0.675113 1:+96542733 None:intergenic
AACTGCAAATGATCCTACCA+AGG 0.682014 1:-96544014 MsG0180005817.01.T01:intron
TTCTACGAAGCCTCTCAGAG+AGG 0.714642 1:+96544035 None:intergenic
AATGCAAACTCTTCTAACGC+CGG 0.716376 1:-96544623 MsG0180005817.01.T01:CDS
TTAACTACATCAGATCGAGG+GGG 0.724482 1:+96543716 None:intergenic
AGAGATTGGAGAAAACTGCG+AGG 0.729408 1:-96544243 MsG0180005817.01.T01:CDS
CCATGGGCAGTTTATCACAG+TGG 0.733786 1:-96542480 MsG0180005817.01.T01:three_prime_UTR
GTGTTCCGGCAGGTTCACGG+CGG 0.774246 1:-96544596 MsG0180005817.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGTTAAATAAGAAATT+AGG - Chr1:96543716-96543735 MsG0180005817.01.T01:CDS 10.0%
!! AATTGTTAAATAAGAAATTA+GGG - Chr1:96543717-96543736 MsG0180005817.01.T01:CDS 10.0%
!!! TCAATTTTTTTTAATAGAAA+TGG - Chr1:96543916-96543935 MsG0180005817.01.T01:intron 10.0%
!! ATTGTTAAATAAGAAATTAG+GGG - Chr1:96543718-96543737 MsG0180005817.01.T01:CDS 15.0%
!! TTAGTTATTATTTACAATGT+TGG - Chr1:96543216-96543235 MsG0180005817.01.T01:intron 15.0%
!!! ATAATTTCAAAATTGCATTT+TGG + Chr1:96544616-96544635 None:intergenic 15.0%
!! AATATTATTCTTTCCTTTAC+AGG - Chr1:96544152-96544171 MsG0180005817.01.T01:CDS 20.0%
!! ATTAACATTATTAGCAAAGA+AGG + Chr1:96543578-96543597 None:intergenic 20.0%
!! GAAATTGAATTCAATTTCTA+GGG - Chr1:96542671-96542690 MsG0180005817.01.T01:intron 20.0%
!! TCAAAATACTTGTTTGATAA+GGG - Chr1:96544693-96544712 MsG0180005817.01.T01:five_prime_UTR 20.0%
!! TGAAATTGAATTCAATTTCT+AGG - Chr1:96542670-96542689 MsG0180005817.01.T01:intron 20.0%
!! TTCAAAATACTTGTTTGATA+AGG - Chr1:96544692-96544711 MsG0180005817.01.T01:five_prime_UTR 20.0%
!!! ATGAATAATTGAATTTGCTT+AGG - Chr1:96543015-96543034 MsG0180005817.01.T01:intron 20.0%
! AAAAGCCCAAAAATAAAACT+GGG - Chr1:96542253-96542272 MsG0180005817.01.T01:three_prime_UTR 25.0%
! AAGAACTGTTCAATTTAAGA+GGG + Chr1:96542488-96542507 None:intergenic 25.0%
! ACAACTTAATTAAACGCTTA+TGG - Chr1:96543096-96543115 MsG0180005817.01.T01:intron 25.0%
! CAATGGTAAACTATGTATAA+GGG - Chr1:96543616-96543635 MsG0180005817.01.T01:CDS 25.0%
! GTAGTTAAAAGCTTACAAAA+TGG - Chr1:96543281-96543300 MsG0180005817.01.T01:intron 25.0%
! TAGGAAATAGAACAAAAACT+AGG - Chr1:96543987-96544006 MsG0180005817.01.T01:intron 25.0%
! TATAAAATTGCCTTCAATAG+AGG - Chr1:96543489-96543508 MsG0180005817.01.T01:intron 25.0%
! TGTTAATTGTTCTAACTGTT+TGG - Chr1:96543048-96543067 MsG0180005817.01.T01:intron 25.0%
! TTACATTAGACAAGTTATGA+GGG + Chr1:96544575-96544594 None:intergenic 25.0%
! TTTAAACAAACTATCGACAA+TGG + Chr1:96543698-96543717 None:intergenic 25.0%
!! AATTTTGCTTCAGAATTGTT+CGG + Chr1:96542452-96542471 None:intergenic 25.0%
!! ATGATTAGACTGTTGTTATT+TGG - Chr1:96543742-96543761 MsG0180005817.01.T01:intron 25.0%
!! TTAAGTTGTTTATCTAAGCA+TGG + Chr1:96543085-96543104 None:intergenic 25.0%
!! TTTTGTTGAATCATGAAACT+AGG - Chr1:96543968-96543987 MsG0180005817.01.T01:intron 25.0%
!!! TAAACGTTTTAATCATCCAA+TGG - Chr1:96543599-96543618 MsG0180005817.01.T01:CDS 25.0%
!!! TGATTAGACTGTTGTTATTT+GGG - Chr1:96543743-96543762 MsG0180005817.01.T01:intron 25.0%
!!! TTTTGAGTTCTAGTAGTTTA+CGG + Chr1:96542281-96542300 None:intergenic 25.0%
AAGTCTGGTAGAATGAATTT+AGG - Chr1:96544298-96544317 MsG0180005817.01.T01:intron 30.0%
ACTGAAATTTCCTCTATTGA+AGG + Chr1:96543502-96543521 None:intergenic 30.0%
ATTACAAACCTTCCAACAAA+AGG - Chr1:96543836-96543855 MsG0180005817.01.T01:intron 30.0%
ATTGTGTTGGATAGAATCTA+TGG - Chr1:96544099-96544118 MsG0180005817.01.T01:CDS 30.0%
CAAACAGTGATTTCACATTA+AGG + Chr1:96543178-96543197 None:intergenic 30.0%
CCAATGGTAAACTATGTATA+AGG - Chr1:96543615-96543634 MsG0180005817.01.T01:CDS 30.0%
CCTTATACATAGTTTACCAT+TGG + Chr1:96543618-96543637 None:intergenic 30.0%
CTTACATTAGACAAGTTATG+AGG + Chr1:96544576-96544595 None:intergenic 30.0%
CTTCCAACAAAAGGAAAAAT+CGG - Chr1:96543845-96543864 MsG0180005817.01.T01:intron 30.0%
GAAAAGCCCAAAAATAAAAC+TGG - Chr1:96542252-96542271 MsG0180005817.01.T01:three_prime_UTR 30.0%
GAAGAACTGTTCAATTTAAG+AGG + Chr1:96542489-96542508 None:intergenic 30.0%
GTGAGTAACATTAATTGTGT+TGG - Chr1:96544086-96544105 MsG0180005817.01.T01:CDS 30.0%
TAGAACTCAAAAGTGAGAAT+CGG - Chr1:96542289-96542308 MsG0180005817.01.T01:three_prime_UTR 30.0%
TCAAATGAACCAATTCAAAC+AGG - Chr1:96543152-96543171 MsG0180005817.01.T01:intron 30.0%
TCATGATTCAACAAAAGCAA+TGG + Chr1:96543964-96543983 None:intergenic 30.0%
TGAACTAAAAACAAGTACCT+TGG + Chr1:96542988-96543007 None:intergenic 30.0%
TGTTGGAAGGTTTGTAATAT+GGG + Chr1:96543834-96543853 None:intergenic 30.0%
TTGTTGGAAGGTTTGTAATA+TGG + Chr1:96543835-96543854 None:intergenic 30.0%
! ATCTTAGCAGTAATTTTACC+AGG - Chr1:96544731-96544750 MsG0180005817.01.T01:five_prime_UTR 30.0%
! ATTTTGCTTCAGAATTGTTC+GGG + Chr1:96542451-96542470 None:intergenic 30.0%
! TGACAATGTTGTTATTGTGT+AGG - Chr1:96542710-96542729 MsG0180005817.01.T01:intron 30.0%
! TTTGAGTTCTAGTAGTTTAC+GGG + Chr1:96542280-96542299 None:intergenic 30.0%
!! ATTAGACTGTTGTTATTTGG+GGG - Chr1:96543745-96543764 MsG0180005817.01.T01:intron 30.0%
!! GATTAGACTGTTGTTATTTG+GGG - Chr1:96543744-96543763 MsG0180005817.01.T01:intron 30.0%
!! TTTTAACTACATCAGATCGA+GGG + Chr1:96543271-96543290 None:intergenic 30.0%
AAAACAACCACTGGAAATGA+GGG + Chr1:96544339-96544358 None:intergenic 35.0%
AATTCATTCTACCAGACTTG+AGG + Chr1:96544297-96544316 None:intergenic 35.0%
ACAATCCTTTCTCATTTCCT+TGG - Chr1:96544186-96544205 MsG0180005817.01.T01:CDS 35.0%
ACATTAAGGCCTGTTTGAAT+TGG + Chr1:96543164-96543183 None:intergenic 35.0%
AGAAATGAAGGAACTGAAAG+AGG + Chr1:96542514-96542533 None:intergenic 35.0%
AGGTCAAATTTGCAAAACAC+AGG + Chr1:96543558-96543577 None:intergenic 35.0%
AGTTGGATTCTTAGTTGCAA+AGG - Chr1:96543358-96543377 MsG0180005817.01.T01:intron 35.0%
ATGCCAGAAAACAATACAGA+TGG + Chr1:96543670-96543689 None:intergenic 35.0%
ATTCTTTCCTTTACAGGCTT+CGG - Chr1:96544158-96544177 MsG0180005817.01.T01:CDS 35.0%
CAATCCTTTCTCATTTCCTT+GGG - Chr1:96544187-96544206 MsG0180005817.01.T01:CDS 35.0%
CCTTATGCAAACTTCAGAAA+TGG + Chr1:96544270-96544289 None:intergenic 35.0%
CTAAAAACAAGTACCTTGGT+AGG + Chr1:96542984-96543003 None:intergenic 35.0%
GAAATGAAGGAACTGAAAGA+GGG + Chr1:96542513-96542532 None:intergenic 35.0%
TACTTGTTTGATAAGGGATG+CGG - Chr1:96544699-96544718 MsG0180005817.01.T01:five_prime_UTR 35.0%
TCTACAGTTTGGACATGTTT+GGG - Chr1:96544535-96544554 MsG0180005817.01.T01:CDS 35.0%
TGCACAGATTCTTTACAACT+TGG + Chr1:96544434-96544453 None:intergenic 35.0%
TTCAATTTAAGAGGGAGTGA+GGG + Chr1:96542480-96542499 None:intergenic 35.0%
TTCAGCAATTCAAGATCCAT+GGG - Chr1:96544486-96544505 MsG0180005817.01.T01:CDS 35.0%
TTGGTGCAGGTAAAACTTAT+TGG - Chr1:96543458-96543477 MsG0180005817.01.T01:intron 35.0%
TTTAACTACATCAGATCGAG+GGG + Chr1:96543270-96543289 None:intergenic 35.0%
! ACTCCATCTGTATTGTTTTC+TGG - Chr1:96543664-96543683 MsG0180005817.01.T01:CDS 35.0%
! ATTAGGTAGCTTAGGGTTTT+GGG - Chr1:96542773-96542792 MsG0180005817.01.T01:CDS 35.0%
! CAATGTTGTTATTGTGTAGG+TGG - Chr1:96542713-96542732 MsG0180005817.01.T01:intron 35.0%
! CGATTTTTCCTTTTGTTGGA+AGG + Chr1:96543847-96543866 None:intergenic 35.0%
! CTGCATTCATTTCAGTGTTT+TGG - Chr1:96542907-96542926 MsG0180005817.01.T01:intron 35.0%
! GAATTTGCTTAGGAAGCTAA+AGG - Chr1:96543025-96543044 MsG0180005817.01.T01:intron 35.0%
! TCTCGCATTAGATGTCTTTT+TGG - Chr1:96543439-96543458 MsG0180005817.01.T01:intron 35.0%
! TTTTGCTTCAGAATTGTTCG+GGG + Chr1:96542450-96542469 None:intergenic 35.0%
!! ACTCACATTAGTTTGTTGCT+TGG + Chr1:96544072-96544091 None:intergenic 35.0%
!! ATTAGATGTCTTTTTGGTGC+AGG - Chr1:96543445-96543464 MsG0180005817.01.T01:intron 35.0%
!! CCATTTCTGAAGTTTGCATA+AGG - Chr1:96544267-96544286 MsG0180005817.01.T01:intron 35.0%
!! CTTTTAACTACATCAGATCG+AGG + Chr1:96543272-96543291 None:intergenic 35.0%
!! GGTATAGCATTGAACCTTTT+GGG - Chr1:96543302-96543321 MsG0180005817.01.T01:intron 35.0%
!! GTATAGCATTGAACCTTTTG+GGG - Chr1:96543303-96543322 MsG0180005817.01.T01:intron 35.0%
!! TGGTATAGCATTGAACCTTT+TGG - Chr1:96543301-96543320 MsG0180005817.01.T01:intron 35.0%
!!! ACACCGATTTTTCCTTTTGT+TGG + Chr1:96543851-96543870 None:intergenic 35.0%
!!! ATTTCAGTGTTTTGGTCCTT+TGG - Chr1:96542915-96542934 MsG0180005817.01.T01:intron 35.0%
!!! GAAATGAGGGTACACTTTTT+TGG + Chr1:96544326-96544345 None:intergenic 35.0%
AACTGCAAATGATCCTACCA+AGG - Chr1:96542968-96542987 MsG0180005817.01.T01:intron 40.0%
AAGACATCTAATGCGAGAAC+AGG + Chr1:96543437-96543456 None:intergenic 40.0%
AATGCAAACTCTTCTAACGC+CGG - Chr1:96542359-96542378 MsG0180005817.01.T01:intron 40.0%
AGAAATGGAAGAGCTTCTGA+CGG + Chr1:96544255-96544274 None:intergenic 40.0%
ATGGAGTTGTTCTCCAGAAT+AGG + Chr1:96543651-96543670 None:intergenic 40.0%
CCATTGACGATGAGAAATGA+AGG + Chr1:96542526-96542545 None:intergenic 40.0%
CCTTCATTTCTCATCGTCAA+TGG - Chr1:96542523-96542542 MsG0180005817.01.T01:exon 40.0%
CTTCAGCAATTCAAGATCCA+TGG - Chr1:96544485-96544504 MsG0180005817.01.T01:CDS 40.0%
GAAAACAACCACTGGAAATG+AGG + Chr1:96544340-96544359 None:intergenic 40.0%
GAGCGATTCCCTGATAATAT+GGG + Chr1:96543403-96543422 None:intergenic 40.0%
GATTCCCTGATAATATGGGT+TGG + Chr1:96543399-96543418 None:intergenic 40.0%
GCAGTTTACTGTCTACAGTT+TGG - Chr1:96544524-96544543 MsG0180005817.01.T01:CDS 40.0%
GTCTACAGTTTGGACATGTT+TGG - Chr1:96544534-96544553 MsG0180005817.01.T01:CDS 40.0%
GTTCAATTTAAGAGGGAGTG+AGG + Chr1:96542481-96542500 None:intergenic 40.0%
TCAAGCGATTAGGTAGCTTA+GGG - Chr1:96542766-96542785 MsG0180005817.01.T01:CDS 40.0%
TCAATTTAAGAGGGAGTGAG+GGG + Chr1:96542479-96542498 None:intergenic 40.0%
TCCATGAAGAAAACAACCAC+TGG + Chr1:96544348-96544367 None:intergenic 40.0%
TCTGCCAACCCATATTATCA+GGG - Chr1:96543392-96543411 MsG0180005817.01.T01:intron 40.0%
TGCAACTAAGAATCCAACTG+TGG + Chr1:96543357-96543376 None:intergenic 40.0%
TTAACTACATCAGATCGAGG+GGG + Chr1:96543269-96543288 None:intergenic 40.0%
TTCAAGCGATTAGGTAGCTT+AGG - Chr1:96542765-96542784 MsG0180005817.01.T01:CDS 40.0%
! CACTTTTCCGGTAACAACAA+CGG + Chr1:96542844-96542863 None:intergenic 40.0%
! GATTAGGTAGCTTAGGGTTT+TGG - Chr1:96542772-96542791 MsG0180005817.01.T01:CDS 40.0%
! TTAGGTAGCTTAGGGTTTTG+GGG - Chr1:96542774-96542793 MsG0180005817.01.T01:CDS 40.0%
! TTTTCCGATTCTTCGTTGGA+AGG + Chr1:96542600-96542619 None:intergenic 40.0%
!! AGGGCATCATTTTCCTATTC+TGG - Chr1:96543635-96543654 MsG0180005817.01.T01:CDS 40.0%
!! GAGCTTTTAGTTGTGGTTTC+AGG - Chr1:96543241-96543260 MsG0180005817.01.T01:intron 40.0%
!! GTTGGTTGAGCTTTTAGTTG+TGG - Chr1:96543234-96543253 MsG0180005817.01.T01:intron 40.0%
!! TCCAGTGGTTGTTTTCTTCA+TGG - Chr1:96544344-96544363 MsG0180005817.01.T01:intron 40.0%
!! TCGTTTTCCGTTGTTGTTAC+CGG - Chr1:96542834-96542853 MsG0180005817.01.T01:intron 40.0%
!!! ACGGGTCCCAGTTTTATTTT+TGG + Chr1:96542262-96542281 None:intergenic 40.0%
!!! CGGGTCCCAGTTTTATTTTT+GGG + Chr1:96542261-96542280 None:intergenic 40.0%
!!! CTTTTTAAGACCCTCTTCGT+TGG - Chr1:96544389-96544408 MsG0180005817.01.T01:CDS 40.0%
AAACCCTGATGTTGCATCAC+TGG + Chr1:96544651-96544670 None:intergenic 45.0%
AAGTGTACCCTCATTTCCAG+TGG - Chr1:96544329-96544348 MsG0180005817.01.T01:intron 45.0%
AGAAGAAGCGGTTACTGTGA+AGG + Chr1:96542556-96542575 None:intergenic 45.0%
AGAGAGGCGAATATAGCCAA+AGG + Chr1:96542934-96542953 None:intergenic 45.0%
AGAGATTGGAGAAAACTGCG+AGG - Chr1:96542739-96542758 MsG0180005817.01.T01:CDS 45.0%
ATGTCAACCACCAACGAAGA+GGG + Chr1:96544402-96544421 None:intergenic 45.0%
CACTCCTTCCAACGAAGAAT+CGG - Chr1:96542593-96542612 MsG0180005817.01.T01:CDS 45.0%
CATAAGGTATGCCTCAAGTC+TGG - Chr1:96544283-96544302 MsG0180005817.01.T01:intron 45.0%
CTCTGCCAACCCATATTATC+AGG - Chr1:96543391-96543410 MsG0180005817.01.T01:intron 45.0%
GAAATGGCTGAGATTGAGAG+TGG + Chr1:96542414-96542433 None:intergenic 45.0%
GAAGAAGCGGTTACTGTGAA+GGG + Chr1:96542555-96542574 None:intergenic 45.0%
GAAGCCCAAGGAAATGAGAA+AGG + Chr1:96544194-96544213 None:intergenic 45.0%
GCGTAGTTGTTCGATTTCTG+TGG + Chr1:96542339-96542358 None:intergenic 45.0%
GCTGTAGCATAAAACGTTGC+CGG + Chr1:96542873-96542892 None:intergenic 45.0%
GGAAAAAGCGAAACTCGATC+AGG - Chr1:96542614-96542633 MsG0180005817.01.T01:intron 45.0%
GGAGCGATTCCCTGATAATA+TGG + Chr1:96543404-96543423 None:intergenic 45.0%
GGATGGGATCTGCTATTCTT+GGG - Chr1:96543324-96543343 MsG0180005817.01.T01:intron 45.0%
TATTATCAGGGAATCGCTCC+TGG - Chr1:96543404-96543423 MsG0180005817.01.T01:intron 45.0%
TGCAGAGGATTGAGAAGAAG+CGG + Chr1:96542568-96542587 None:intergenic 45.0%
TTACTTGAAGCCTACCACAG+TGG + Chr1:96544127-96544146 None:intergenic 45.0%
! ACGTTTTATGCTACAGCTGG+TGG - Chr1:96542876-96542895 MsG0180005817.01.T01:intron 45.0%
! GCAACGTTTTATGCTACAGC+TGG - Chr1:96542873-96542892 MsG0180005817.01.T01:intron 45.0%
! TGTTATTTGGGGGTGAAGTG+TGG - Chr1:96543755-96543774 MsG0180005817.01.T01:intron 45.0%
! TTTAAGACCCTCTTCGTTGG+TGG - Chr1:96544392-96544411 MsG0180005817.01.T01:CDS 45.0%
!! AGCATTGAACCTTTTGGGGA+TGG - Chr1:96543307-96543326 MsG0180005817.01.T01:intron 45.0%
!! CTGATAATATGGGTTGGCAG+AGG + Chr1:96543393-96543412 None:intergenic 45.0%
!! GCATTGAACCTTTTGGGGAT+GGG - Chr1:96543308-96543327 MsG0180005817.01.T01:intron 45.0%
!! TAGAATCTATGGTGCCACTG+TGG - Chr1:96544110-96544129 MsG0180005817.01.T01:CDS 45.0%
!!! CGCTTTTTCCGATTCTTCGT+TGG + Chr1:96542604-96542623 None:intergenic 45.0%
AATGGAAGAGCTTCTGACGG+CGG + Chr1:96544252-96544271 None:intergenic 50.0%
AGAATTGTTCGGGGAAGACG+AGG + Chr1:96542441-96542460 None:intergenic 50.0%
CCACTGTGATAAACTGCCCA+TGG + Chr1:96544505-96544524 None:intergenic 50.0%
CCATGGGCAGTTTATCACAG+TGG - Chr1:96544502-96544521 MsG0180005817.01.T01:CDS 50.0%
CGACCAGTGATGCAACATCA+GGG - Chr1:96544645-96544664 MsG0180005817.01.T01:five_prime_UTR 50.0%
GAATTGTTCGGGGAAGACGA+GGG + Chr1:96542440-96542459 None:intergenic 50.0%
GATGTCAACCACCAACGAAG+AGG + Chr1:96544403-96544422 None:intergenic 50.0%
GCTATATTCGCCTCTCTGAG+AGG - Chr1:96542937-96542956 MsG0180005817.01.T01:intron 50.0%
GGGATGGGATCTGCTATTCT+TGG - Chr1:96543323-96543342 MsG0180005817.01.T01:intron 50.0%
GTGTTTGCCGAAGCCTGTAA+AGG + Chr1:96544168-96544187 None:intergenic 50.0%
TACCGGAAAAGTGACATCGC+CGG - Chr1:96542851-96542870 MsG0180005817.01.T01:intron 50.0%
TAGCAGATCCCATCCCCAAA+AGG + Chr1:96543319-96543338 None:intergenic 50.0%
TCGACCAGTGATGCAACATC+AGG - Chr1:96544644-96544663 MsG0180005817.01.T01:exon 50.0%
TGTGTAGGTGGCGAAGAGAT+TGG - Chr1:96542725-96542744 MsG0180005817.01.T01:CDS 50.0%
TTCTACGAAGCCTCTCAGAG+AGG + Chr1:96542950-96542969 None:intergenic 50.0%
TTTGGGGGTGAAGTGTGGAT+TGG - Chr1:96543760-96543779 MsG0180005817.01.T01:intron 50.0%
! GCGAGGCATTTCAAGCGATT+AGG - Chr1:96542756-96542775 MsG0180005817.01.T01:CDS 50.0%
!! ATCTATGGTGCCACTGTGGT+AGG - Chr1:96544114-96544133 MsG0180005817.01.T01:CDS 50.0%
CCAGCGAGAAAAGAAGCCCA+AGG + Chr1:96544206-96544225 None:intergenic 55.0%
CTTGGGATGCAAGCCACAGT+TGG - Chr1:96543341-96543360 MsG0180005817.01.T01:intron 55.0%
GCGAGAACAGGACTTGAACC+AGG + Chr1:96543425-96543444 None:intergenic 55.0%
GGAAGGAGTGAAAGCTGCAG+AGG + Chr1:96542583-96542602 None:intergenic 55.0%
! CCTTGGGCTTCTTTTCTCGC+TGG - Chr1:96544203-96544222 MsG0180005817.01.T01:CDS 55.0%
!!! TGCCGGCGATGTCACTTTTC+CGG + Chr1:96542856-96542875 None:intergenic 55.0%
ACCGTGTTCCGGCAGGTTCA+CGG - Chr1:96542383-96542402 MsG0180005817.01.T01:intron 60.0%
GGGAAGACGAGGGACGGAAA+TGG + Chr1:96542430-96542449 None:intergenic 60.0%
TGTTCGGGGAAGACGAGGGA+CGG + Chr1:96542436-96542455 None:intergenic 60.0%
!! GGGGGTGAAGTGTGGATTGG+TGG - Chr1:96543763-96543782 MsG0180005817.01.T01:intron 60.0%
AACCTGCCGGAACACGGTGC+CGG + Chr1:96542381-96542400 None:intergenic 65.0%
CTAACGCCGGCACCGTGTTC+CGG - Chr1:96542372-96542391 MsG0180005817.01.T01:intron 65.0%
GCCGTGAACCTGCCGGAACA+CGG + Chr1:96542387-96542406 None:intergenic 65.0%
GTGTTCCGGCAGGTTCACGG+CGG - Chr1:96542386-96542405 MsG0180005817.01.T01:intron 65.0%
TGGCGCCGCCGTGAACCTGC+CGG + Chr1:96542394-96542413 None:intergenic 75.0%
! CGCCGGCACCGTGTTCCGGC+AGG - Chr1:96542376-96542395 MsG0180005817.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 96542252 96544752 96542252 ID=MsG0180005817.01;Name=MsG0180005817.01
Chr1 mRNA 96542252 96544752 96542252 ID=MsG0180005817.01.T01;Parent=MsG0180005817.01;Name=MsG0180005817.01.T01;_AED=0.49;_eAED=0.50;_QI=108|0.8|0.83|1|0.8|0.66|6|232|318
Chr1 exon 96542252 96542372 96542252 ID=MsG0180005817.01.T01:exon:10626;Parent=MsG0180005817.01.T01
Chr1 exon 96542414 96542615 96542414 ID=MsG0180005817.01.T01:exon:10625;Parent=MsG0180005817.01.T01
Chr1 exon 96542716 96542830 96542716 ID=MsG0180005817.01.T01:exon:10624;Parent=MsG0180005817.01.T01
Chr1 exon 96543525 96543741 96543525 ID=MsG0180005817.01.T01:exon:10623;Parent=MsG0180005817.01.T01
Chr1 exon 96544015 96544272 96544015 ID=MsG0180005817.01.T01:exon:10622;Parent=MsG0180005817.01.T01
Chr1 exon 96544369 96544752 96544369 ID=MsG0180005817.01.T01:exon:10621;Parent=MsG0180005817.01.T01
Chr1 five_prime_UTR 96544645 96544752 96544645 ID=MsG0180005817.01.T01:five_prime_utr;Parent=MsG0180005817.01.T01
Chr1 CDS 96544369 96544644 96544369 ID=MsG0180005817.01.T01:cds;Parent=MsG0180005817.01.T01
Chr1 CDS 96544015 96544272 96544015 ID=MsG0180005817.01.T01:cds;Parent=MsG0180005817.01.T01
Chr1 CDS 96543525 96543741 96543525 ID=MsG0180005817.01.T01:cds;Parent=MsG0180005817.01.T01
Chr1 CDS 96542716 96542830 96542716 ID=MsG0180005817.01.T01:cds;Parent=MsG0180005817.01.T01
Chr1 CDS 96542525 96542615 96542525 ID=MsG0180005817.01.T01:cds;Parent=MsG0180005817.01.T01
Chr1 three_prime_UTR 96542414 96542524 96542414 ID=MsG0180005817.01.T01:three_prime_utr;Parent=MsG0180005817.01.T01
Chr1 three_prime_UTR 96542252 96542372 96542252 ID=MsG0180005817.01.T01:three_prime_utr;Parent=MsG0180005817.01.T01
Gene Sequence

>MsG0180005817.01.T01

ATGCAAACTCTTCTAACGCCGGCACCGTGTTCCGGCAGGTTCACGGCGGCGCCACTCTCAATCTCAGCCATTTCCGTCCCTCGTCTTCCCCGAACAATTCTGAAGCAAAATTCTATCCCCTCACTCCCTCTTAAATTGAACAGTTCTTCTCCCTCTTTCAGTTCCTTCATTTCTCATCGTCAATGGAAGCTTCCCTTCACAGTAACCGCTTCTTCTCAATCCTCTGCAGCTTTCACTCCTTCCAACGAAGAATCGGAAAAAGCGAAACTCGATCAGGTGGCGAAGAGATTGGAGAAAACTGCGAGGCATTTCAAGCGATTAGGTAGCTTAGGGTTTTGGGGTCAGCTAGTGTGCACTATTGTATCAGCTGTCATACTATCGTTTTCCGTTGTTGTTACCGGAAAAGTGACATCGCCGGCAACGTTTTATGCTACAGCTGGTGGAATAGCAGCTGCATTCATTTCAGTGTTTTGGTCCTTTGGCTATATTCGCCTCTCTGAGAGGCTTCGTAGAACTGCAAATGATCCTACCAAGGCACCCCCTCGATCTGATGTAGTTAAAAGCTTACAAAATGGTATAGCATTGAACCTTTTGGGGATGGGATCTGCTATTCTTGGGATGCAAGCCACAGTTGGATTCTTAGTTGCAAAGGCTCTTACTACCTCTGCCAACCCATATTATCAGGGAATCGCTCCTGGTTCAAGTCCTGTTCTCGCATTAGATGTCTTTTTGGTGCAGGTAAAACTTATTGGCTTCGGCAAACACAATCCTTTCTCATTTCCTTGGGCTTCTTTTCTCGCTGGAGTTGTTGAGATCAGTCACATTACCGCCGTCAGAAGCTCTTCCATTTCTGAAGTTTGCATAAGCTTTTTAAGACCCTCTTCGTTGGTGGTTGACATCTTATATTTCCAAGTTGTAAAGAATCTGTGCAATGTTGTTAATAAAAATGAATCATGA

Protein sequence

>MsG0180005817.01.T01

MQTLLTPAPCSGRFTAAPLSISAISVPRLPRTILKQNSIPSLPLKLNSSSPSFSSFISHRQWKLPFTVTASSQSSAAFTPSNEESEKAKLDQVAKRLEKTARHFKRLGSLGFWGQLVCTIVSAVILSFSVVVTGKVTSPATFYATAGGIAAAFISVFWSFGYIRLSERLRRTANDPTKAPPRSDVVKSLQNGIALNLLGMGSAILGMQATVGFLVAKALTTSANPYYQGIAPGSSPVLALDVFLVQVKLIGFGKHNPFSFPWASFLAGVVEISHITAVRSSSISEVCISFLRPSSLVVDILYFQVVKNLCNVVNKNES*