AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044339.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044339.01.T01 MTR_8g054450 92.593 189 12 1 75 261 20 208 1.83e-107 311
MsG0880044339.01.T01 MTR_8g054450 81.250 144 25 1 75 216 20 163 1.21e-61 193
MsG0880044339.01.T01 MTR_2g038700 65.079 63 22 0 1 63 29 91 1.42e-20 87.8
MsG0880044339.01.T01 MTR_2g064455 64.516 62 22 0 1 62 40 101 1.59e-20 88.2
MsG0880044339.01.T01 MTR_1350s0010 66.129 62 21 0 1 62 223 284 7.41e-20 87.4
MsG0880044339.01.T01 MTR_3g093740 66.129 62 21 0 1 62 64 125 1.52e-19 86.3
MsG0880044339.01.T01 MTR_4g113395 66.129 62 21 0 1 62 50 111 1.03e-18 83.6
MsG0880044339.01.T01 MTR_3g082760 39.286 112 65 1 157 265 26 137 1.14e-18 82.4
MsG0880044339.01.T01 MTR_0432s0030 70.833 72 21 0 1 72 67 138 1.36e-18 80.5
MsG0880044339.01.T01 MTR_3g081050 66.129 62 21 0 1 62 85 146 1.42e-18 84.7
MsG0880044339.01.T01 MTR_6g461940 62.903 62 23 0 1 62 95 156 4.36e-18 80.5
MsG0880044339.01.T01 MTR_7g007240 64.516 62 22 0 1 62 7 68 1.00e-17 76.3
MsG0880044339.01.T01 MTR_3g448400 62.903 62 23 0 1 62 57 118 1.53e-16 77.4
MsG0880044339.01.T01 MTR_0061s0090 60.938 64 25 0 1 64 159 222 1.71e-16 79.0
MsG0880044339.01.T01 MTR_2g048730 52.326 86 20 1 1 65 44 129 4.12e-16 77.4
MsG0880044339.01.T01 MTR_8g015920 54.839 62 28 0 1 62 22 83 6.77e-16 72.8
MsG0880044339.01.T01 MTR_6g034090 59.677 62 23 1 1 62 12 71 1.24e-14 72.0
MsG0880044339.01.T01 MTR_3g056685 45.361 97 45 2 1 97 29 117 3.26e-14 69.3
MsG0880044339.01.T01 MTR_8g016530 45.361 97 45 2 1 97 29 117 3.26e-14 69.3
MsG0880044339.01.T01 MTR_4g037595 68.889 45 14 0 18 62 5 49 1.48e-13 66.6
MsG0880044339.01.T01 MTR_6g017295 45.902 61 33 0 1 61 420 480 1.36e-12 67.8
MsG0880044339.01.T01 MTR_3g465160 55.172 58 24 1 2 59 14 69 1.39e-12 66.2
MsG0880044339.01.T01 MTR_8g071930 56.897 58 25 0 1 58 48 105 6.55e-12 63.9
MsG0880044339.01.T01 MTR_1g046940 61.364 44 17 0 1 44 125 168 2.00e-11 63.5
MsG0880044339.01.T01 MTR_7g035165 51.724 58 28 0 5 62 60 117 4.53e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044339.01.T01 AT1G78630 80.405 148 27 1 115 262 65 210 4.92e-83 249
MsG0880044339.01.T01 AT3G01790 37.500 96 60 0 157 252 32 127 1.04e-15 73.2
MsG0880044339.01.T01 AT3G01790 37.500 96 60 0 157 252 32 127 5.09e-15 72.4
MsG0880044339.01.T01 AT3G01790 37.500 96 60 0 157 252 32 127 5.09e-15 72.4

Find 70 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAATGAAAGGTTTGAAAA+TGG 0.249766 8:-40214264 None:intergenic
TCATGTTCCGTTCATGTACT+TGG 0.275979 8:+40211958 None:intergenic
TTGACATGATCCGAAGCTTT+TGG 0.279177 8:-40214957 None:intergenic
GAAGAGTCGCAATTTATCTT+TGG 0.284128 8:+40212063 MsG0880044339.01.T01:CDS
AGTGCCGCCGATAAAGCTTC+TGG 0.285755 8:-40216455 None:intergenic
GATGCTACAGATAAAATTCT+TGG 0.293196 8:+40215005 MsG0880044339.01.T01:CDS
GTTGAACTTACCCTCCCTTT+TGG 0.329004 8:-40216573 None:intergenic
GAACCTGAGCCCCGCTTTCA+AGG 0.332396 8:+40214375 MsG0880044339.01.T01:CDS
CATGTACTTGGGTCTTCCTA+TGG 0.333659 8:+40211970 None:intergenic
ACCTACATGAGCCTTGAAAA+AGG 0.335297 8:-40212143 None:intergenic
AGTAATGATTGCAGGACATT+TGG 0.339663 8:+40214919 MsG0880044339.01.T01:intron
AGGGTCAATTCTAGACTGTC+TGG 0.381062 8:+40212037 MsG0880044339.01.T01:CDS
AAGAGTCGCAATTTATCTTT+GGG 0.381381 8:+40212064 MsG0880044339.01.T01:CDS
AGAGGACCCAGAAGCTTTAT+CGG 0.394368 8:+40216448 MsG0880044339.01.T01:CDS
ATAATGAAAGGTTTGAAAAT+GGG 0.418527 8:-40214263 None:intergenic
GCATGTTCAATAATTCGTTC+AGG 0.425127 8:-40216534 None:intergenic
ATGTACTTGGGTCTTCCTAT+GGG 0.447959 8:+40211971 MsG0880044339.01.T01:CDS
GGGCCTTGAAAGCGGGGCTC+AGG 0.450923 8:-40214378 None:intergenic
CAGGAATTCTGTTCTGCAGC+TGG 0.453155 8:-40216515 None:intergenic
TCTGTAGATAAATGCAGAAA+AGG 0.458587 8:+40216407 MsG0880044339.01.T01:intron
TTCCTATGGGTGGTGACTCC+CGG 0.467779 8:+40211984 MsG0880044339.01.T01:CDS
TTATACCGGGCCTTGAAAGC+GGG 0.474696 8:-40214385 None:intergenic
GTTCGTGGCATGCTTCCAAA+AGG 0.478146 8:+40216558 MsG0880044339.01.T01:CDS
AGGACAAAACAGACTTCATA+AGG 0.478957 8:-40212099 None:intergenic
TGTCTACTGTACAAGTCTCT+TGG 0.480042 8:-40216612 None:intergenic
GTGCCGCCGATAAAGCTTCT+GGG 0.487074 8:-40216454 None:intergenic
ATTATTGAACATGCTGTTCG+TGG 0.489898 8:+40216543 MsG0880044339.01.T01:CDS
TTTCATTGTCCATTCTCAGC+AGG 0.495956 8:+40214311 MsG0880044339.01.T01:CDS
AGGACATTTGGAACACAACC+TGG 0.498468 8:+40214931 MsG0880044339.01.T01:intron
CGGCGGCACTCAGGTCGACC+TGG 0.501166 8:+40216468 MsG0880044339.01.T01:CDS
TGAGCCCCGCTTTCAAGGCC+CGG 0.505387 8:+40214380 MsG0880044339.01.T01:CDS
ACGAGGATCTTCTTCGACAA+TGG 0.505973 8:-40214340 None:intergenic
TGAGAGAATGAAGAAGATGA+AGG 0.506757 8:-40214195 None:intergenic
AAGCTTTATCGGCGGCACTC+AGG 0.528770 8:+40216459 MsG0880044339.01.T01:CDS
AAATGCACCCATGTCCACAC+TGG 0.530923 8:-40215087 None:intergenic
CATGTTCCGTTCATGTACTT+GGG 0.536365 8:+40211959 None:intergenic
TGGAAGTGTCCTGCTGAGAA+TGG 0.538194 8:-40214320 None:intergenic
AACCTGGTATCCAAAAGCTT+CGG 0.541687 8:+40214947 MsG0880044339.01.T01:CDS
CATGGGTGCATTTGTAATTG+TGG 0.546463 8:+40215097 MsG0880044339.01.T01:CDS
GCAGAAAAGGTTGCTGTCAG+TGG 0.548150 8:+40216420 MsG0880044339.01.T01:CDS
TTGAAGAAGATGATAATGAA+AGG 0.554980 8:-40214275 None:intergenic
GAGAGAATGAAGAAGATGAA+GGG 0.556314 8:-40214194 None:intergenic
GTACAGTAGACATGTTAAGA+TGG 0.567280 8:+40216623 MsG0880044339.01.T01:CDS
AAAAGGAAAGGAAGTAGACC+AGG 0.567968 8:-40212126 None:intergenic
CAGAAAAGGTTGCTGTCAGT+GGG 0.568241 8:+40216421 MsG0880044339.01.T01:CDS
GGGTCAATTCTAGACTGTCT+GGG 0.583567 8:+40212038 MsG0880044339.01.T01:CDS
TGGGAATTGAGAAGCGACAA+AGG 0.586332 8:-40214244 None:intergenic
AATGCACCCATGTCCACACT+GGG 0.589532 8:-40215086 None:intergenic
TACTTGGGTCTTCCTATGGG+TGG 0.589668 8:+40211974 MsG0880044339.01.T01:CDS
TTCGTGGCATGCTTCCAAAA+GGG 0.595250 8:+40216559 MsG0880044339.01.T01:CDS
GTTATACCGGGCCTTGAAAG+CGG 0.599322 8:-40214386 None:intergenic
TTATACACCCAGTGTGGACA+TGG 0.605815 8:+40215079 MsG0880044339.01.T01:CDS
AAGGAAGTAGACCAGGAGAG+AGG 0.614153 8:-40212119 None:intergenic
AGTCGCAATTTATCTTTGGG+TGG 0.617112 8:+40212067 MsG0880044339.01.T01:CDS
GTCTCGACTGTCATACCACC+AGG 0.617174 8:-40216486 None:intergenic
TATACCGGGCCTTGAAAGCG+GGG 0.621350 8:-40214384 None:intergenic
GTGGCATGCTTCCAAAAGGG+AGG 0.631240 8:+40216562 MsG0880044339.01.T01:CDS
GAATTGACCCTCTCAACCAA+AGG 0.633884 8:-40212025 None:intergenic
TTCCGGGAGTCACCACCCAT+AGG 0.638864 8:-40211986 None:intergenic
TGAGAATGGACAATGAAAGA+TGG 0.639431 8:-40214306 None:intergenic
TGGCATGCTTCCAAAAGGGA+GGG 0.645169 8:+40216563 MsG0880044339.01.T01:CDS
CAATTGCGAATCACATCCGA+GGG 0.651937 8:+40215042 MsG0880044339.01.T01:CDS
ACAATTGCGAATCACATCCG+AGG 0.652462 8:+40215041 MsG0880044339.01.T01:CDS
TATACACCCAGTGTGGACAT+GGG 0.666351 8:+40215080 MsG0880044339.01.T01:CDS
ATGTCAATACAGCGAAAACG+TGG 0.689193 8:+40214973 MsG0880044339.01.T01:CDS
CGGCACTCAGGTCGACCTGG+TGG 0.696042 8:+40216471 MsG0880044339.01.T01:CDS
GGACCCAGAAGCTTTATCGG+CGG 0.709633 8:+40216451 MsG0880044339.01.T01:CDS
TCAATTCTAGACTGTCTGGG+TGG 0.713101 8:+40212041 MsG0880044339.01.T01:CDS
AGTGACTTATACACCCAGTG+TGG 0.728515 8:+40215073 MsG0880044339.01.T01:CDS
GGTTCAACACAGATGAAACG+AGG 0.749686 8:-40214357 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GCAAAAAAAATATATATATT+TGG - Chr8:40213004-40213023 None:intergenic 10.0%
!!! ACTAGAAATAATATATTTTT+AGG - Chr8:40213702-40213721 None:intergenic 10.0%
!!! CTAGAAATAATATATTTTTA+GGG - Chr8:40213701-40213720 None:intergenic 10.0%
!!! TGGTTTTAAATTTTAATTAT+AGG + Chr8:40216126-40216145 MsG0880044339.01.T01:intron 10.0%
!!! TTTTAACTCTTTTTTTTTTT+GGG + Chr8:40212189-40212208 MsG0880044339.01.T01:intron 10.0%
!!! TTTTTAACTCTTTTTTTTTT+TGG + Chr8:40212188-40212207 MsG0880044339.01.T01:intron 10.0%
!! AAAAACTAAAATATCAATAG+AGG + Chr8:40216211-40216230 MsG0880044339.01.T01:intron 15.0%
!! AAAAACTGAAAAGAAAAAAT+TGG - Chr8:40214764-40214783 None:intergenic 15.0%
!! AGAAAAAATTAAAGTTGTAT+TGG - Chr8:40213873-40213892 None:intergenic 15.0%
!! ATAATTGAAGTAAATTAACA+TGG - Chr8:40214681-40214700 None:intergenic 15.0%
!! TGATAATTAAAAGCAAAATT+AGG - Chr8:40213323-40213342 None:intergenic 15.0%
!! TTTGGTATGAAATTTATAAT+TGG + Chr8:40213091-40213110 MsG0880044339.01.T01:intron 15.0%
!!! AAACTGGAAATATAATTTTA+TGG + Chr8:40214566-40214585 MsG0880044339.01.T01:intron 15.0%
!!! AATCAAATTTTTGTTTTTGA+GGG - Chr8:40213769-40213788 None:intergenic 15.0%
!!! AATTTTCTTGTTTTAATTTC+TGG + Chr8:40214479-40214498 MsG0880044339.01.T01:intron 15.0%
!!! AATTTTCTTTTGGTTTAAAA+TGG + Chr8:40215226-40215245 MsG0880044339.01.T01:intron 15.0%
!!! ATTTTCTTGTTTTAATTTCT+GGG + Chr8:40214480-40214499 MsG0880044339.01.T01:intron 15.0%
!!! TAATCAAATTTTTGTTTTTG+AGG - Chr8:40213770-40213789 None:intergenic 15.0%
!!! TATATATATTTTTTTTGCTC+AGG + Chr8:40213006-40213025 MsG0880044339.01.T01:intron 15.0%
!!! TATTTTATTTGGAAAAAAGA+TGG + Chr8:40215457-40215476 MsG0880044339.01.T01:intron 15.0%
!!! TATTTTTAAAGCTTTTAACT+TGG + Chr8:40214849-40214868 MsG0880044339.01.T01:intron 15.0%
!!! TGATATTTTAGTTTTTTTTG+TGG - Chr8:40216207-40216226 None:intergenic 15.0%
!!! TTTAACTCTTTTTTTTTTTG+GGG + Chr8:40212190-40212209 MsG0880044339.01.T01:intron 15.0%
!! AAATTGAATGAAATGATCAT+TGG - Chr8:40213999-40214018 None:intergenic 20.0%
!! AAGAAGATATAAGAATTACA+AGG - Chr8:40215753-40215772 None:intergenic 20.0%
!! AAGAGTTAAAAATAGATTCA+AGG - Chr8:40212180-40212199 None:intergenic 20.0%
!! AAGTTTATTTACTATGCATT+TGG + Chr8:40216106-40216125 MsG0880044339.01.T01:intron 20.0%
!! AATGATGATAACAATTTGAA+GGG - Chr8:40215423-40215442 None:intergenic 20.0%
!! AATTAAAGTTGTATTGGAAA+TGG - Chr8:40213867-40213886 None:intergenic 20.0%
!! AATTGTTTATCATGGAAAAT+TGG - Chr8:40216182-40216201 None:intergenic 20.0%
!! AGAGTTAAAAATAGATTCAA+GGG - Chr8:40212179-40212198 None:intergenic 20.0%
!! ATAACTTTCAAACATAAAAG+TGG - Chr8:40213362-40213381 None:intergenic 20.0%
!! ATAATGAAAGGTTTGAAAAT+GGG - Chr8:40214266-40214285 None:intergenic 20.0%
!! CATGTTATAAATAAGAAGAA+GGG - Chr8:40215599-40215618 None:intergenic 20.0%
!! CTGAAATAATTAGAGAAATA+AGG - Chr8:40215622-40215641 None:intergenic 20.0%
!! GAAAATAACTTGGATTAATT+GGG + Chr8:40212240-40212259 MsG0880044339.01.T01:intron 20.0%
!! GTTATCAGAAAGATAAAAAA+AGG - Chr8:40212615-40212634 None:intergenic 20.0%
!! TATGAAATTTATAATTGGCT+CGG + Chr8:40213096-40213115 MsG0880044339.01.T01:intron 20.0%
!! TCGATTTAATATATTTGAAG+CGG + Chr8:40214883-40214902 MsG0880044339.01.T01:intron 20.0%
!!! ATAGAAACTGGTATTTTATT+TGG + Chr8:40215446-40215465 MsG0880044339.01.T01:intron 20.0%
!!! TCTTTTCAGTTTTTATTTCT+TGG + Chr8:40214770-40214789 MsG0880044339.01.T01:intron 20.0%
!!! TTAACTCTTTTTTTTTTTGG+GGG + Chr8:40212191-40212210 MsG0880044339.01.T01:intron 20.0%
!!! TTTCGTTGTTTTTTTTTGAA+AGG + Chr8:40213446-40213465 MsG0880044339.01.T01:intron 20.0%
! AAACAAAATCTCCTACAAAA+TGG + Chr8:40216234-40216253 MsG0880044339.01.T01:intron 25.0%
! AAACCAGAAAGAAGATAATA+AGG - Chr8:40214600-40214619 None:intergenic 25.0%
! ATGATCATAATACTCTCATT+TGG + Chr8:40212879-40212898 MsG0880044339.01.T01:intron 25.0%
! ATGTATGACTAATTATCTGA+TGG + Chr8:40216150-40216169 MsG0880044339.01.T01:intron 25.0%
! CATTAATGACTATGTTTATG+AGG + Chr8:40216285-40216304 MsG0880044339.01.T01:intron 25.0%
! CTGCATTAATTATTTGCAAT+TGG + Chr8:40215129-40215148 MsG0880044339.01.T01:intron 25.0%
! GAATGATGATAACAATTTGA+AGG - Chr8:40215424-40215443 None:intergenic 25.0%
! GATAATGAAAGGTTTGAAAA+TGG - Chr8:40214267-40214286 None:intergenic 25.0%
! GCATGTTATAAATAAGAAGA+AGG - Chr8:40215600-40215619 None:intergenic 25.0%
! GGAAAATAACTTGGATTAAT+TGG + Chr8:40212239-40212258 MsG0880044339.01.T01:intron 25.0%
! GGAACTTATGAAATATATGA+TGG + Chr8:40215251-40215270 MsG0880044339.01.T01:intron 25.0%
! GGTAAATTAGGAAAATAACT+TGG + Chr8:40212230-40212249 MsG0880044339.01.T01:intron 25.0%
! GTATTATGATCATTGTTTGA+CGG - Chr8:40212872-40212891 None:intergenic 25.0%
! GTTATGTATATCTGATGTTA+AGG + Chr8:40216048-40216067 MsG0880044339.01.T01:intron 25.0%
! GTTTATCGAATAATTGTGAT+TGG - Chr8:40213628-40213647 None:intergenic 25.0%
! TATCTATAGAATGTAGAAAG+CGG - Chr8:40216080-40216099 None:intergenic 25.0%
! TCTACATTCTATAGATAGTA+AGG + Chr8:40216083-40216102 MsG0880044339.01.T01:intron 25.0%
! TTAATTATTTGCAATTGGCA+TGG + Chr8:40215134-40215153 MsG0880044339.01.T01:intron 25.0%
! TTATCATGAAAGAATGAAAC+TGG + Chr8:40214550-40214569 MsG0880044339.01.T01:intron 25.0%
! TTGTGGAAAATTGTTTATCA+TGG - Chr8:40216190-40216209 None:intergenic 25.0%
!! AAACAATACAACCATTTTGT+AGG - Chr8:40216248-40216267 None:intergenic 25.0%
!! AATCATTACTCTTTTCAGTT+AGG - Chr8:40214909-40214928 None:intergenic 25.0%
!! ATTGCTTTAAATCTTTACGT+CGG + Chr8:40214810-40214829 MsG0880044339.01.T01:intron 25.0%
!! GAGTTTAACTTATCTTTACT+TGG + Chr8:40212316-40212335 MsG0880044339.01.T01:intron 25.0%
!! TAATTAGCTTGGAAATGTAT+AGG + Chr8:40214726-40214745 MsG0880044339.01.T01:intron 25.0%
!! TCTCATTAGTTTAATTAGCT+TGG + Chr8:40214715-40214734 MsG0880044339.01.T01:intron 25.0%
!! TGTTAGAGTTTTACAACAAA+AGG + Chr8:40213231-40213250 MsG0880044339.01.T01:intron 25.0%
!! TTGAAGAAGATGATAATGAA+AGG - Chr8:40214278-40214297 None:intergenic 25.0%
!! TTTTTACTTGAACATCTTTC+TGG + Chr8:40215201-40215220 MsG0880044339.01.T01:intron 25.0%
!!! ATATATTTTTTTTGCTCAGG+AGG + Chr8:40213009-40213028 MsG0880044339.01.T01:intron 25.0%
!!! CAAACCAAAGTTTTTTGAAA+CGG + Chr8:40215309-40215328 MsG0880044339.01.T01:intron 25.0%
!!! CATTAAGAGTACTAGTATTT+AGG - Chr8:40215791-40215810 None:intergenic 25.0%
!!! CTCTCTCTTTTTTTGTTAAT+GGG + Chr8:40214411-40214430 MsG0880044339.01.T01:intron 25.0%
!!! CTTGGACTATTATTTTAACT+GGG + Chr8:40216382-40216401 MsG0880044339.01.T01:intron 25.0%
!!! CTTTCTGGTTAATTTTCTTT+TGG + Chr8:40215216-40215235 MsG0880044339.01.T01:intron 25.0%
!!! GAAATTTTTAATAAGTGCTG+AGG - Chr8:40215549-40215568 None:intergenic 25.0%
!!! TAACTCTTTTTTTTTTTGGG+GGG + Chr8:40212192-40212211 MsG0880044339.01.T01:intron 25.0%
!!! TCTCTCTCTTTTTTTGTTAA+TGG + Chr8:40214410-40214429 MsG0880044339.01.T01:intron 25.0%
!!! TCTTGGACTATTATTTTAAC+TGG + Chr8:40216381-40216400 MsG0880044339.01.T01:intron 25.0%
!!! TTCTTTTGGTTTAAAATGGA+TGG + Chr8:40215230-40215249 MsG0880044339.01.T01:intron 25.0%
!!! TTGCTTTTAATTATCACATG+CGG + Chr8:40213327-40213346 MsG0880044339.01.T01:intron 25.0%
!!! TTGGACTATTATTTTAACTG+GGG + Chr8:40216383-40216402 MsG0880044339.01.T01:intron 25.0%
AAAAGAGAGAGAAGTTATAC+CGG - Chr8:40214402-40214421 None:intergenic 30.0%
AAAATTCCTTCTTCTAACGA+AGG - Chr8:40212574-40212593 None:intergenic 30.0%
AAATTGTGTGAGAGAAAAGT+TGG - Chr8:40213912-40213931 None:intergenic 30.0%
AAGAGTCGCAATTTATCTTT+GGG + Chr8:40212064-40212083 MsG0880044339.01.T01:CDS 30.0%
AAGTGTTATAACCATAATGC+AGG - Chr8:40213421-40213440 None:intergenic 30.0%
AATAACAGTAACTCTCCAAA+AGG - Chr8:40215723-40215742 None:intergenic 30.0%
ACTAATGAGATACGAAATGT+AGG - Chr8:40214705-40214724 None:intergenic 30.0%
ACTGAATTTCCAAAAACCTT+TGG + Chr8:40212009-40212028 MsG0880044339.01.T01:CDS 30.0%
ATATCAGTCTGCAAAACAAT+TGG - Chr8:40212764-40212783 None:intergenic 30.0%
ATCATCATTCTGATAGAAAC+TGG + Chr8:40215434-40215453 MsG0880044339.01.T01:intron 30.0%
ATCGAATAATTGTGATTGGA+TGG - Chr8:40213624-40213643 None:intergenic 30.0%
ATGTCCGTTTCAAAAAACTT+TGG - Chr8:40215316-40215335 None:intergenic 30.0%
ATGTGACATTATTACAGCAA+AGG - Chr8:40215839-40215858 None:intergenic 30.0%
CAACAACCGATAACTTAATT+AGG + Chr8:40212963-40212982 MsG0880044339.01.T01:intron 30.0%
CACTATTTATCTCAAAAAGG+AGG + Chr8:40212264-40212283 MsG0880044339.01.T01:intron 30.0%
CCTTTGCCTAATTAAGTTAT+CGG - Chr8:40212972-40212991 None:intergenic 30.0%
CGATAACTTAATTAGGCAAA+GGG + Chr8:40212970-40212989 MsG0880044339.01.T01:intron 30.0%
GATGCTACAGATAAAATTCT+TGG + Chr8:40215005-40215024 MsG0880044339.01.T01:CDS 30.0%
GGACACTATTTATCTCAAAA+AGG + Chr8:40212261-40212280 MsG0880044339.01.T01:intron 30.0%
GTCACATTGACAAAGAAATT+TGG + Chr8:40215852-40215871 MsG0880044339.01.T01:intron 30.0%
TAAAAGTCAACATCTTTGTG+TGG + Chr8:40212918-40212937 MsG0880044339.01.T01:intron 30.0%
TCATAAAGCAATCGTCTAAA+CGG - Chr8:40216359-40216378 None:intergenic 30.0%
TCTGTAGATAAATGCAGAAA+AGG + Chr8:40216407-40216426 MsG0880044339.01.T01:intron 30.0%
TGATAACAAATTAGCAACTG+TGG + Chr8:40212628-40212647 MsG0880044339.01.T01:intron 30.0%
TGTGACATTATTACAGCAAA+GGG - Chr8:40215838-40215857 None:intergenic 30.0%
TTATGTCTGAATGTTTGTCA+TGG + Chr8:40215984-40216003 MsG0880044339.01.T01:intron 30.0%
TTTCTTGCGTTTGGATTATT+TGG + Chr8:40213197-40213216 MsG0880044339.01.T01:intron 30.0%
! CTAATTAAGTTATCGGTTGT+TGG - Chr8:40212965-40212984 None:intergenic 30.0%
! CTACAACTTTTTGACATCAA+GGG + Chr8:40212841-40212860 MsG0880044339.01.T01:intron 30.0%
! GTTAGAAGAAGGAATTTTGA+AGG + Chr8:40212576-40212595 MsG0880044339.01.T01:intron 30.0%
! TAATTTGACTTTCTTGCGTT+TGG + Chr8:40213188-40213207 MsG0880044339.01.T01:intron 30.0%
! TCTACAACTTTTTGACATCA+AGG + Chr8:40212840-40212859 MsG0880044339.01.T01:intron 30.0%
! TGAGACTTTTCTATTCCATA+TGG - Chr8:40214519-40214538 None:intergenic 30.0%
! TTTTTGACCTGTGACTATTT+GGG + Chr8:40213063-40213082 MsG0880044339.01.T01:intron 30.0%
!! AAGCCTTATTATCTTCTTTC+TGG + Chr8:40214594-40214613 MsG0880044339.01.T01:intron 30.0%
!! AAGTGACACTCATTTTGAAA+CGG - Chr8:40213807-40213826 None:intergenic 30.0%
!! ACTTGTTTTCATTAGGATGA+GGG + Chr8:40212654-40212673 MsG0880044339.01.T01:intron 30.0%
!! AGTAACGTTGTATTTTGAAG+AGG - Chr8:40212816-40212835 None:intergenic 30.0%
!! ATTTTAGCCTTTCCTTTTTG+CGG + Chr8:40215358-40215377 MsG0880044339.01.T01:intron 30.0%
!! CATGGTTTTTCGATCATAAT+GGG + Chr8:40216002-40216021 MsG0880044339.01.T01:intron 30.0%
!! GTTTTTGGAAATTCAGTTTC+CGG - Chr8:40212006-40212025 None:intergenic 30.0%
!! TACTTGTTTTCATTAGGATG+AGG + Chr8:40212653-40212672 MsG0880044339.01.T01:intron 30.0%
!! TCATGGTTTTTCGATCATAA+TGG + Chr8:40216001-40216020 MsG0880044339.01.T01:intron 30.0%
!! TTTTTGGAAATTCAGTTTCC+GGG - Chr8:40212005-40212024 None:intergenic 30.0%
!!! AACTCTTTTTTTTTTTGGGG+GGG + Chr8:40212193-40212212 MsG0880044339.01.T01:intron 30.0%
!!! ACAAAGATGTTGACTTTTAG+AGG - Chr8:40212917-40212936 None:intergenic 30.0%
!!! AGTGAGAACTTTATTTTGGT+GGG + Chr8:40212546-40212565 MsG0880044339.01.T01:intron 30.0%
!!! CATGGAAATGCTGTTTTTTA+TGG + Chr8:40215152-40215171 MsG0880044339.01.T01:intron 30.0%
!!! GTTTTTTGAAACGGACATAT+AGG + Chr8:40215318-40215337 MsG0880044339.01.T01:intron 30.0%
AAAGAGAGAGAAGTTATACC+GGG - Chr8:40214401-40214420 None:intergenic 35.0%
AAATAAGAAGAAGGGTCAAG+TGG - Chr8:40215591-40215610 None:intergenic 35.0%
AAGTTAAGCTCCAATCATTC+TGG + Chr8:40213279-40213298 MsG0880044339.01.T01:intron 35.0%
AAGTTAGAGGCAAAACATCA+AGG + Chr8:40215498-40215517 MsG0880044339.01.T01:intron 35.0%
AATAAGAAGAAGGGTCAAGT+GGG - Chr8:40215590-40215609 None:intergenic 35.0%
AATTTGTCCCAAATAGTCAC+AGG - Chr8:40213073-40213092 None:intergenic 35.0%
ACAATGGACGGTATATTACA+AGG - Chr8:40215653-40215672 None:intergenic 35.0%
ACGATTGCTTTATGAAGTCT+TGG + Chr8:40216364-40216383 MsG0880044339.01.T01:intron 35.0%
ACTCTCCAAAAGGATAATAG+AGG - Chr8:40215713-40215732 None:intergenic 35.0%
AGACTGATATGAATGACAAG+TGG + Chr8:40212774-40212793 MsG0880044339.01.T01:intron 35.0%
AGCATAAAACTTCGTGAGAA+GGG - Chr8:40216315-40216334 None:intergenic 35.0%
AGCTTAAAACGACAAAACGA+AGG + Chr8:40214036-40214055 MsG0880044339.01.T01:intron 35.0%
AGGACAAAACAGACTTCATA+AGG - Chr8:40212102-40212121 None:intergenic 35.0%
AGTAATGATTGCAGGACATT+TGG + Chr8:40214919-40214938 MsG0880044339.01.T01:intron 35.0%
AGTTAGAGGCAAAACATCAA+GGG + Chr8:40215499-40215518 MsG0880044339.01.T01:intron 35.0%
ATTATTGAACATGCTGTTCG+TGG + Chr8:40216543-40216562 MsG0880044339.01.T01:CDS 35.0%
CCGATAACTTAATTAGGCAA+AGG + Chr8:40212969-40212988 MsG0880044339.01.T01:intron 35.0%
CTGAAAAGAGTAATGATTGC+AGG + Chr8:40214911-40214930 MsG0880044339.01.T01:intron 35.0%
CTTTACTTGGCAAATGATGT+TGG + Chr8:40212329-40212348 MsG0880044339.01.T01:intron 35.0%
GAAACGGACATATAGGTTAA+TGG + Chr8:40215325-40215344 MsG0880044339.01.T01:intron 35.0%
GAAGAGTCGCAATTTATCTT+TGG + Chr8:40212063-40212082 MsG0880044339.01.T01:CDS 35.0%
GAGAGAATGAAGAAGATGAA+GGG - Chr8:40214197-40214216 None:intergenic 35.0%
GAGAGTTAACAACTGTACAA+TGG - Chr8:40215669-40215688 None:intergenic 35.0%
GAGTACTAGTATTTAGGAAG+AGG - Chr8:40215785-40215804 None:intergenic 35.0%
GCATGTTCAATAATTCGTTC+AGG - Chr8:40216537-40216556 None:intergenic 35.0%
GCTTAAAACGACAAAACGAA+GGG + Chr8:40214037-40214056 MsG0880044339.01.T01:intron 35.0%
GTACAGTAGACATGTTAAGA+TGG + Chr8:40216623-40216642 MsG0880044339.01.T01:CDS 35.0%
GTTAACAACTGTACAATGGA+CGG - Chr8:40215665-40215684 None:intergenic 35.0%
TAGCATAAAACTTCGTGAGA+AGG - Chr8:40216316-40216335 None:intergenic 35.0%
TATCTCAAAAAGGAGGATGA+AGG + Chr8:40212271-40212290 MsG0880044339.01.T01:intron 35.0%
TATGATCATTGTTTGACGGT+TGG - Chr8:40212868-40212887 None:intergenic 35.0%
TGAGAATGGACAATGAAAGA+TGG - Chr8:40214309-40214328 None:intergenic 35.0%
TGAGAGAATGAAGAAGATGA+AGG - Chr8:40214198-40214217 None:intergenic 35.0%
! AAGTCACTAGATTTTTCCCT+CGG - Chr8:40215061-40215080 None:intergenic 35.0%
! GTGACTATTTGGGACAAATT+TGG + Chr8:40213073-40213092 MsG0880044339.01.T01:intron 35.0%
! GTTTTTGACCTGTGACTATT+TGG + Chr8:40213062-40213081 MsG0880044339.01.T01:intron 35.0%
! TGGACTGTTTTGTAAGTAGA+AGG + Chr8:40215271-40215290 MsG0880044339.01.T01:intron 35.0%
! TTAAGTTATCGGTTGTTGGA+AGG - Chr8:40212961-40212980 None:intergenic 35.0%
!! AATTTATAATTGGCTCGGAG+TGG + Chr8:40213101-40213120 MsG0880044339.01.T01:intron 35.0%
!! ACGGAGTGAGAACTTTATTT+TGG + Chr8:40212542-40212561 MsG0880044339.01.T01:intron 35.0%
!! CTACTTCCTTTCCTTTTTCA+AGG + Chr8:40212132-40212151 MsG0880044339.01.T01:CDS 35.0%
!! CTTGTTTTCATTAGGATGAG+GGG + Chr8:40212655-40212674 MsG0880044339.01.T01:intron 35.0%
!! GTGGCATACTTGTTTTCATT+AGG + Chr8:40212647-40212666 MsG0880044339.01.T01:intron 35.0%
!! TTCTCACGAAGTTTTATGCT+AGG + Chr8:40216315-40216334 MsG0880044339.01.T01:intron 35.0%
!!! ACTCTTTTTTTTTTTGGGGG+GGG + Chr8:40212194-40212213 MsG0880044339.01.T01:intron 35.0%
!!! GAGTGAGAACTTTATTTTGG+TGG + Chr8:40212545-40212564 MsG0880044339.01.T01:intron 35.0%
AAAAAGGAGGATGAAGGTCT+GGG + Chr8:40212277-40212296 MsG0880044339.01.T01:intron 40.0%
AAAAGGAAAGGAAGTAGACC+AGG - Chr8:40212129-40212148 None:intergenic 40.0%
AAAGTTGGAGAGGGTAAAGT+TGG - Chr8:40213897-40213916 None:intergenic 40.0%
AACCTGGTATCCAAAAGCTT+CGG + Chr8:40214947-40214966 MsG0880044339.01.T01:CDS 40.0%
AACTTAGTCTCTCAAGCACA+AGG - Chr8:40213536-40213555 None:intergenic 40.0%
AAGGACATTGTTGCAGTTGA+TGG - Chr8:40214147-40214166 None:intergenic 40.0%
ACCTACATGAGCCTTGAAAA+AGG - Chr8:40212146-40212165 None:intergenic 40.0%
AGATGGAGATAAGCCCTATT+TGG + Chr8:40215474-40215493 MsG0880044339.01.T01:intron 40.0%
AGTCGCAATTTATCTTTGGG+TGG + Chr8:40212067-40212086 MsG0880044339.01.T01:CDS 40.0%
ATGTACTTGGGTCTTCCTAT+GGG + Chr8:40211971-40211990 MsG0880044339.01.T01:CDS 40.0%
ATGTCAATACAGCGAAAACG+TGG + Chr8:40214973-40214992 MsG0880044339.01.T01:CDS 40.0%
CAAAAGGATAATAGAGGAGC+AGG - Chr8:40215707-40215726 None:intergenic 40.0%
CAAATGATGTTGGAGGTTGA+GGG + Chr8:40212339-40212358 MsG0880044339.01.T01:intron 40.0%
CATGAGCCTTGAAAAAGGAA+AGG - Chr8:40212141-40212160 None:intergenic 40.0%
CATGGGTGCATTTGTAATTG+TGG + Chr8:40215097-40215116 MsG0880044339.01.T01:CDS 40.0%
CCAAAAACCTTTGGTTGAGA+GGG + Chr8:40212018-40212037 MsG0880044339.01.T01:CDS 40.0%
GAAATGACATAGGAGGTTGT+TGG + Chr8:40212694-40212713 MsG0880044339.01.T01:intron 40.0%
GATGGAGATAAGCCCTATTT+GGG + Chr8:40215475-40215494 MsG0880044339.01.T01:intron 40.0%
GGTCTCTGTAATCTACCATA+TGG + Chr8:40214501-40214520 MsG0880044339.01.T01:intron 40.0%
GTATTTAGGAAGAGGAAGAG+TGG - Chr8:40215777-40215796 None:intergenic 40.0%
GTGCTCACTCTATCTTTACT+GGG - Chr8:40214114-40214133 None:intergenic 40.0%
TACAGATCATATACGACGTG+AGG + Chr8:40212513-40212532 MsG0880044339.01.T01:intron 40.0%
TACTTGGCAAATGATGTTGG+AGG + Chr8:40212332-40212351 MsG0880044339.01.T01:intron 40.0%
TCACTCTATCTTTACTGGGA+GGG - Chr8:40214110-40214129 None:intergenic 40.0%
TCCAAAAACCTTTGGTTGAG+AGG + Chr8:40212017-40212036 MsG0880044339.01.T01:CDS 40.0%
TCTTCAACCACCAGAATGAT+TGG - Chr8:40213292-40213311 None:intergenic 40.0%
TGACTTACCGCAAAAAGGAA+AGG - Chr8:40215368-40215387 None:intergenic 40.0%
TGCCTCTAACTTCCCAAATA+GGG - Chr8:40215490-40215509 None:intergenic 40.0%
TGTCTACTGTACAAGTCTCT+TGG - Chr8:40216615-40216634 None:intergenic 40.0%
TGTGAGAGAAAAGTTGGAGA+GGG - Chr8:40213906-40213925 None:intergenic 40.0%
TGTGCTCACTCTATCTTTAC+TGG - Chr8:40214115-40214134 None:intergenic 40.0%
TTAAGCTCCAATCATTCTGG+TGG + Chr8:40213282-40213301 MsG0880044339.01.T01:intron 40.0%
TTGCCTCTAACTTCCCAAAT+AGG - Chr8:40215491-40215510 None:intergenic 40.0%
TTTCATTGTCCATTCTCAGC+AGG + Chr8:40214311-40214330 MsG0880044339.01.T01:CDS 40.0%
TTTGGATTATTTGGCGTGAC+AGG + Chr8:40213206-40213225 MsG0880044339.01.T01:intron 40.0%
! AATTTGCTTAGCGTTCAGAG+AGG + Chr8:40212463-40212482 MsG0880044339.01.T01:intron 40.0%
! CTGCTCCTCTATTATCCTTT+TGG + Chr8:40215705-40215724 MsG0880044339.01.T01:intron 40.0%
! GTGCTTGAGAGACTAAGTTT+TGG + Chr8:40213537-40213556 MsG0880044339.01.T01:intron 40.0%
! TTGACATGATCCGAAGCTTT+TGG - Chr8:40214960-40214979 None:intergenic 40.0%
! TTTTAAGCGTGCCTGCATTA+TGG + Chr8:40213407-40213426 MsG0880044339.01.T01:intron 40.0%
! TTTTCATTAGGATGAGGGGA+GGG + Chr8:40212659-40212678 MsG0880044339.01.T01:intron 40.0%
!! AGAGTTTTAACAGCGCGTTA+TGG + Chr8:40212385-40212404 MsG0880044339.01.T01:intron 40.0%
!! TAATAAGTGCTGAGGCCTTT+GGG - Chr8:40215541-40215560 None:intergenic 40.0%
!! TTAATAAGTGCTGAGGCCTT+TGG - Chr8:40215542-40215561 None:intergenic 40.0%
!!! CTCTTTTTTTTTTTGGGGGG+GGG + Chr8:40212195-40212214 MsG0880044339.01.T01:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - Chr8:40213803-40213822 None:intergenic 40.0%
!!! GGTGTTTTAGAGACGAACTA+AGG - Chr8:40213515-40213534 None:intergenic 40.0%
!!! TCCTTTTTCAAGGCTCATGT+AGG + Chr8:40212142-40212161 MsG0880044339.01.T01:CDS 40.0%
!!! TCTTTTTTTTTTTGGGGGGG+GGG + Chr8:40212196-40212215 MsG0880044339.01.T01:intron 40.0%
!!! TGACACTCATTTTGAAACGG+AGG - Chr8:40213804-40213823 None:intergenic 40.0%
!!! TTTTTTTGCTCAGGAGGTTG+TGG + Chr8:40213015-40213034 MsG0880044339.01.T01:intron 40.0%
AAAAGGAGGATGAAGGTCTG+GGG + Chr8:40212278-40212297 MsG0880044339.01.T01:intron 45.0%
ACAATTGCGAATCACATCCG+AGG + Chr8:40215041-40215060 MsG0880044339.01.T01:CDS 45.0%
ACGAGGATCTTCTTCGACAA+TGG - Chr8:40214343-40214362 None:intergenic 45.0%
AGATCATATACGACGTGAGG+TGG + Chr8:40212516-40212535 MsG0880044339.01.T01:intron 45.0%
AGCCCTATTTGGGAAGTTAG+AGG + Chr8:40215485-40215504 MsG0880044339.01.T01:intron 45.0%
AGGGTCAATTCTAGACTGTC+TGG + Chr8:40212037-40212056 MsG0880044339.01.T01:CDS 45.0%
AGTGACTTATACACCCAGTG+TGG + Chr8:40215073-40215092 MsG0880044339.01.T01:CDS 45.0%
ATCATATACGACGTGAGGTG+GGG + Chr8:40212518-40212537 MsG0880044339.01.T01:intron 45.0%
ATGCGTCTCCTTATACCCAA+AGG + Chr8:40215523-40215542 MsG0880044339.01.T01:intron 45.0%
ATGGAGAGGGGGTTAATAGT+TGG + Chr8:40212488-40212507 MsG0880044339.01.T01:intron 45.0%
CAAAAAGGAGGATGAAGGTC+TGG + Chr8:40212276-40212295 MsG0880044339.01.T01:intron 45.0%
CAATTGCGAATCACATCCGA+GGG + Chr8:40215042-40215061 MsG0880044339.01.T01:CDS 45.0%
CAGAAAAGGTTGCTGTCAGT+GGG + Chr8:40216421-40216440 MsG0880044339.01.T01:CDS 45.0%
CATGGTGACTTACCGCAAAA+AGG - Chr8:40215373-40215392 None:intergenic 45.0%
CTCACTCTATCTTTACTGGG+AGG - Chr8:40214111-40214130 None:intergenic 45.0%
GAATTGACCCTCTCAACCAA+AGG - Chr8:40212028-40212047 None:intergenic 45.0%
GATCATATACGACGTGAGGT+GGG + Chr8:40212517-40212536 MsG0880044339.01.T01:intron 45.0%
GCAAATGATGTTGGAGGTTG+AGG + Chr8:40212338-40212357 MsG0880044339.01.T01:intron 45.0%
GGGAGGAAAAAGGTTGTTTG+TGG + Chr8:40212359-40212378 MsG0880044339.01.T01:intron 45.0%
GGGTCAATTCTAGACTGTCT+GGG + Chr8:40212038-40212057 MsG0880044339.01.T01:CDS 45.0%
GGTTCAACACAGATGAAACG+AGG - Chr8:40214360-40214379 None:intergenic 45.0%
GTGTGAGAGAAAAGTTGGAG+AGG - Chr8:40213907-40213926 None:intergenic 45.0%
TATACACCCAGTGTGGACAT+GGG + Chr8:40215080-40215099 MsG0880044339.01.T01:CDS 45.0%
TCAATTCTAGACTGTCTGGG+TGG + Chr8:40212041-40212060 MsG0880044339.01.T01:CDS 45.0%
TGCGGTAAGTCACCATGAAA+TGG + Chr8:40215376-40215395 MsG0880044339.01.T01:intron 45.0%
TGGGAATTGAGAAGCGACAA+AGG - Chr8:40214247-40214266 None:intergenic 45.0%
TGGGATCCTTCGTTAGAAGA+AGG + Chr8:40212565-40212584 MsG0880044339.01.T01:intron 45.0%
TTATACACCCAGTGTGGACA+TGG + Chr8:40215079-40215098 MsG0880044339.01.T01:CDS 45.0%
TTCGTGGCATGCTTCCAAAA+GGG + Chr8:40216559-40216578 MsG0880044339.01.T01:CDS 45.0%
TTGCTGTCAGTGGGAAAAAG+AGG + Chr8:40216430-40216449 MsG0880044339.01.T01:CDS 45.0%
! AGAGGACCCAGAAGCTTTAT+CGG + Chr8:40216448-40216467 MsG0880044339.01.T01:CDS 45.0%
! AGGACATTTGGAACACAACC+TGG + Chr8:40214931-40214950 MsG0880044339.01.T01:intron 45.0%
! AGTTATCGGTTGTTGGAAGG+CGG - Chr8:40212958-40212977 None:intergenic 45.0%
! ATCCGAAGCTTTTGGATACC+AGG - Chr8:40214952-40214971 None:intergenic 45.0%
! CCCTCTCAACCAAAGGTTTT+TGG - Chr8:40212021-40212040 None:intergenic 45.0%
! GAGTGGCTTGGAAATGACAT+AGG + Chr8:40212684-40212703 MsG0880044339.01.T01:intron 45.0%
! GTTGAACTTACCCTCCCTTT+TGG - Chr8:40216576-40216595 None:intergenic 45.0%
! GTTTTCATTAGGATGAGGGG+AGG + Chr8:40212658-40212677 MsG0880044339.01.T01:intron 45.0%
! TGGCTTGGAAATGACATAGG+AGG + Chr8:40212687-40212706 MsG0880044339.01.T01:intron 45.0%
!! ACATAGGAGGTTGTTGGCTT+GGG + Chr8:40212700-40212719 MsG0880044339.01.T01:intron 45.0%
!!! CTTTTTTTTTTTGGGGGGGG+GGG + Chr8:40212197-40212216 MsG0880044339.01.T01:intron 45.0%
!!! TTTTTTTTTTTGGGGGGGGG+GGG + Chr8:40212198-40212217 MsG0880044339.01.T01:intron 45.0%
AAAGGAGGATGAAGGTCTGG+GGG + Chr8:40212279-40212298 MsG0880044339.01.T01:intron 50.0%
AAATGCACCCATGTCCACAC+TGG - Chr8:40215090-40215109 None:intergenic 50.0%
AACAGCGCGTTATGGTGTAG+AGG + Chr8:40212393-40212412 MsG0880044339.01.T01:intron 50.0%
AAGGAAGTAGACCAGGAGAG+AGG - Chr8:40212122-40212141 None:intergenic 50.0%
AATGCACCCATGTCCACACT+GGG - Chr8:40215089-40215108 None:intergenic 50.0%
ACAGCGCGTTATGGTGTAGA+GGG + Chr8:40212394-40212413 MsG0880044339.01.T01:intron 50.0%
AGGAGGTTGTGGCTCAGAAA+AGG + Chr8:40213026-40213045 MsG0880044339.01.T01:intron 50.0%
ATGAAGGTCTGGGGGTTAAG+AGG + Chr8:40212287-40212306 MsG0880044339.01.T01:intron 50.0%
ATGATGTTGGAGGTTGAGGG+AGG + Chr8:40212342-40212361 MsG0880044339.01.T01:intron 50.0%
CAGGAATTCTGTTCTGCAGC+TGG - Chr8:40216518-40216537 None:intergenic 50.0%
CATGAAATGGCGTAGAGGCT+CGG + Chr8:40215389-40215408 MsG0880044339.01.T01:intron 50.0%
CTTAGCGTTCAGAGAGGTGA+TGG + Chr8:40212469-40212488 MsG0880044339.01.T01:intron 50.0%
GATGAAGGGAACGTCACTGA+TGG - Chr8:40214183-40214202 None:intergenic 50.0%
GCAGAAAAGGTTGCTGTCAG+TGG + Chr8:40216420-40216439 MsG0880044339.01.T01:CDS 50.0%
GTCACCATGAAATGGCGTAG+AGG + Chr8:40215384-40215403 MsG0880044339.01.T01:intron 50.0%
GTTATACCGGGCCTTGAAAG+CGG - Chr8:40214389-40214408 None:intergenic 50.0%
GTTCGTGGCATGCTTCCAAA+AGG + Chr8:40216558-40216577 MsG0880044339.01.T01:CDS 50.0%
TACTTGGGTCTTCCTATGGG+TGG + Chr8:40211974-40211993 MsG0880044339.01.T01:CDS 50.0%
TCATATACGACGTGAGGTGG+GGG + Chr8:40212519-40212538 MsG0880044339.01.T01:intron 50.0%
TGCTGAGGCCTTTGGGTATA+AGG - Chr8:40215534-40215553 None:intergenic 50.0%
TGGAGGTTGAGGGAGGAAAA+AGG + Chr8:40212349-40212368 MsG0880044339.01.T01:intron 50.0%
TGGCATGCTTCCAAAAGGGA+GGG + Chr8:40216563-40216582 MsG0880044339.01.T01:CDS 50.0%
TTATACCGGGCCTTGAAAGC+GGG - Chr8:40214388-40214407 None:intergenic 50.0%
! CTACACCAGCTCTGATCGTT+AGG + Chr8:40213130-40213149 MsG0880044339.01.T01:intron 50.0%
! GACATAGGAGGTTGTTGGCT+TGG + Chr8:40212699-40212718 MsG0880044339.01.T01:intron 50.0%
! GCAACAATGTCCTTGCTGTG+TGG + Chr8:40214153-40214172 MsG0880044339.01.T01:intron 50.0%
! GTCTGTTTTGTCCTCTCTCC+TGG + Chr8:40212108-40212127 MsG0880044339.01.T01:CDS 50.0%
! TGATGGTGAACCACACAGCA+AGG - Chr8:40214166-40214185 None:intergenic 50.0%
!! GTTCAGAGAGGTGATGGAGA+GGG + Chr8:40212475-40212494 MsG0880044339.01.T01:intron 50.0%
!! TGGAAGTGTCCTGCTGAGAA+TGG - Chr8:40214323-40214342 None:intergenic 50.0%
!! TTCAGAGAGGTGATGGAGAG+GGG + Chr8:40212476-40212495 MsG0880044339.01.T01:intron 50.0%
!! TTGGCTTGGGAGGAAGAACT+GGG + Chr8:40212713-40212732 MsG0880044339.01.T01:intron 50.0%
!!! TTTTTTTTTTGGGGGGGGGG+GGG + Chr8:40212199-40212218 MsG0880044339.01.T01:intron 50.0%
AGCCACCTAACGATCAGAGC+TGG - Chr8:40213138-40213157 None:intergenic 55.0%
AGGGTGGATCTCTAGGCGAT+GGG + Chr8:40212413-40212432 MsG0880044339.01.T01:intron 55.0%
AGTGCCGCCGATAAAGCTTC+TGG - Chr8:40216458-40216477 None:intergenic 55.0%
CGAGCCTCTACGCCATTTCA+TGG - Chr8:40215391-40215410 None:intergenic 55.0%
GGTGTAGAGGGTGGATCTCT+AGG + Chr8:40212406-40212425 MsG0880044339.01.T01:intron 55.0%
GTCTCGACTGTCATACCACC+AGG - Chr8:40216489-40216508 None:intergenic 55.0%
GTGCCGCCGATAAAGCTTCT+GGG - Chr8:40216457-40216476 None:intergenic 55.0%
GTGGCATGCTTCCAAAAGGG+AGG + Chr8:40216562-40216581 MsG0880044339.01.T01:CDS 55.0%
TATACCGGGCCTTGAAAGCG+GGG - Chr8:40214387-40214406 None:intergenic 55.0%
TCATTAGGATGAGGGGAGGG+AGG + Chr8:40212662-40212681 MsG0880044339.01.T01:intron 55.0%
TTCCTATGGGTGGTGACTCC+CGG + Chr8:40211984-40212003 MsG0880044339.01.T01:CDS 55.0%
TTGGGAGGAAGAACTGGGGA+GGG + Chr8:40212718-40212737 MsG0880044339.01.T01:intron 55.0%
! AAGCTTTATCGGCGGCACTC+AGG + Chr8:40216459-40216478 MsG0880044339.01.T01:CDS 55.0%
! CACCAGCTCTGATCGTTAGG+TGG + Chr8:40213133-40213152 MsG0880044339.01.T01:intron 55.0%
! GGACCCAGAAGCTTTATCGG+CGG + Chr8:40216451-40216470 MsG0880044339.01.T01:CDS 55.0%
! TGGCTTGGGAGGAAGAACTG+GGG + Chr8:40212714-40212733 MsG0880044339.01.T01:intron 55.0%
!! CGATGGGGGGAGATTAGCTT+CGG + Chr8:40212429-40212448 MsG0880044339.01.T01:intron 55.0%
!! CGTTCAGAGAGGTGATGGAG+AGG + Chr8:40212474-40212493 MsG0880044339.01.T01:intron 55.0%
!! GTTGGCTTGGGAGGAAGAAC+TGG + Chr8:40212712-40212731 MsG0880044339.01.T01:intron 55.0%
!! TAGGAGGTTGTTGGCTTGGG+AGG + Chr8:40212703-40212722 MsG0880044339.01.T01:intron 55.0%
!! TCAGAGAGGTGATGGAGAGG+GGG + Chr8:40212477-40212496 MsG0880044339.01.T01:intron 55.0%
!!! TTTTTTTTTGGGGGGGGGGG+GGG + Chr8:40212200-40212219 MsG0880044339.01.T01:intron 55.0%
ATACGACGTGAGGTGGGGGA+CGG + Chr8:40212523-40212542 MsG0880044339.01.T01:intron 60.0%
CTTGGGAGGAAGAACTGGGG+AGG + Chr8:40212717-40212736 MsG0880044339.01.T01:intron 60.0%
GAACCTGAGCCCCGCTTTCA+AGG + Chr8:40214375-40214394 MsG0880044339.01.T01:CDS 60.0%
GAGGGTGGATCTCTAGGCGA+TGG + Chr8:40212412-40212431 MsG0880044339.01.T01:intron 60.0%
GCGCGTTATGGTGTAGAGGG+TGG + Chr8:40212397-40212416 MsG0880044339.01.T01:intron 60.0%
GGGTGGATCTCTAGGCGATG+GGG + Chr8:40212414-40212433 MsG0880044339.01.T01:intron 60.0%
GGTGGATCTCTAGGCGATGG+GGG + Chr8:40212415-40212434 MsG0880044339.01.T01:intron 60.0%
GTGGATCTCTAGGCGATGGG+GGG + Chr8:40212416-40212435 MsG0880044339.01.T01:intron 60.0%
TTCCGGGAGTCACCACCCAT+AGG - Chr8:40211989-40212008 None:intergenic 60.0%
!! GGAGATTAGCTTCGGCGTGG+TGG + Chr8:40212437-40212456 MsG0880044339.01.T01:intron 60.0%
!!! TTTTTTTTGGGGGGGGGGGG+GGG + Chr8:40212201-40212220 MsG0880044339.01.T01:intron 60.0%
AGGATGAGGGGAGGGAGGAG+TGG + Chr8:40212667-40212686 MsG0880044339.01.T01:intron 65.0%
GGGGGGGGGGTGGGTAAATT+AGG + Chr8:40212218-40212237 MsG0880044339.01.T01:intron 65.0%
TGAGCCCCGCTTTCAAGGCC+CGG + Chr8:40214380-40214399 MsG0880044339.01.T01:CDS 65.0%
!! GGGGGAGATTAGCTTCGGCG+TGG + Chr8:40212434-40212453 MsG0880044339.01.T01:intron 65.0%
!!! TTTTTTTGGGGGGGGGGGGG+GGG + Chr8:40212202-40212221 MsG0880044339.01.T01:intron 65.0%
CGGCACTCAGGTCGACCTGG+TGG + Chr8:40216471-40216490 MsG0880044339.01.T01:CDS 70.0%
GAGGGGAGGGAGGAGTGGCT+TGG + Chr8:40212672-40212691 MsG0880044339.01.T01:intron 70.0%
GGGCCTTGAAAGCGGGGCTC+AGG - Chr8:40214381-40214400 None:intergenic 70.0%
!!! TTTTTTGGGGGGGGGGGGGG+GGG + Chr8:40212203-40212222 MsG0880044339.01.T01:intron 70.0%
CGGCGGCACTCAGGTCGACC+TGG + Chr8:40216468-40216487 MsG0880044339.01.T01:CDS 75.0%
!! TTTTTGGGGGGGGGGGGGGG+GGG + Chr8:40212204-40212223 MsG0880044339.01.T01:intron 75.0%
!!! TTTTGGGGGGGGGGGGGGGG+GGG + Chr8:40212205-40212224 MsG0880044339.01.T01:intron 80.0%
! GGGGGGGGGGGGGGGGGGGT+GGG + Chr8:40212209-40212228 MsG0880044339.01.T01:intron 95.0%
! TGGGGGGGGGGGGGGGGGGG+TGG + Chr8:40212208-40212227 MsG0880044339.01.T01:intron 95.0%
Chromosome Type Strat End Strand Name
Chr8 gene 40211971 40216653 40211971 ID=MsG0880044339.01;Name=MsG0880044339.01
Chr8 mRNA 40211971 40216653 40211971 ID=MsG0880044339.01.T01;Parent=MsG0880044339.01;Name=MsG0880044339.01.T01;_AED=0.44;_eAED=0.46;_QI=0|0.66|0.25|1|1|1|4|0|277
Chr8 exon 40211971 40212163 40211971 ID=MsG0880044339.01.T01:exon:17006;Parent=MsG0880044339.01.T01
Chr8 exon 40214187 40214401 40214187 ID=MsG0880044339.01.T01:exon:17007;Parent=MsG0880044339.01.T01
Chr8 exon 40214933 40215118 40214933 ID=MsG0880044339.01.T01:exon:17008;Parent=MsG0880044339.01.T01
Chr8 exon 40216414 40216653 40216414 ID=MsG0880044339.01.T01:exon:17009;Parent=MsG0880044339.01.T01
Chr8 CDS 40211971 40212163 40211971 ID=MsG0880044339.01.T01:cds;Parent=MsG0880044339.01.T01
Chr8 CDS 40214187 40214401 40214187 ID=MsG0880044339.01.T01:cds;Parent=MsG0880044339.01.T01
Chr8 CDS 40214933 40215118 40214933 ID=MsG0880044339.01.T01:cds;Parent=MsG0880044339.01.T01
Chr8 CDS 40216414 40216653 40216414 ID=MsG0880044339.01.T01:cds;Parent=MsG0880044339.01.T01
Gene Sequence

>MsG0880044339.01.T01

ATGTACTTGGGTCTTCCTATGGGTGGTGACTCCCGGAAACTGAATTTCCAAAAACCTTTGGTTGAGAGGGTCAATTCTAGACTGTCTGGGTGGAAGAGTCGCAATTTATCTTTGGGTGGTCGTTTAGTCCTTATGAAGTCTGTTTTGTCCTCTCTCCTGGTCTACTTCCTTTCCTTTTTCAAGGCTCATGTAGTGACGTTCCCTTCATCTTCTTCATTCTCTCATCACAAGAATTCAACTTCTAAATCTTCCTTTGTCGCTTCTCAATTCCCATTTTCAAACCTTTCATTATCATCTTCTTCAATTCGTACTCCATCTTTCATTGTCCATTCTCAGCAGGACACTTCCATTGTCGAAGAAGATCCTCGTTTCATCTGTGTTGAACCTGAGCCCCGCTTTCAAGGCCCGGACATTTGGAACACAACCTGGTATCCAAAAGCTTCGGATCATGTCAATACAGCGAAAACGTGGTATATTGTTGATGCTACAGATAAAATTCTTGGAAGACTAGCATCAACAATTGCGAATCACATCCGAGGGAAAAATCTAGTGACTTATACACCCAGTGTGGACATGGGTGCATTTGTAATTGTGATAAATGCAGAAAAGGTTGCTGTCAGTGGGAAAAAGAGGACCCAGAAGCTTTATCGGCGGCACTCAGGTCGACCTGGTGGTATGACAGTCGAGACATTTGACCAGCTGCAGAACAGAATTCCTGAACGAATTATTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGGAGGGTAAGTTCAACAAAATTTAATGTTTTTCCAAGAGACTTGTACAGTAGACATGTTAAGATGGATCATTGA

Protein sequence

>MsG0880044339.01.T01

MYLGLPMGGDSRKLNFQKPLVERVNSRLSGWKSRNLSLGGRLVLMKSVLSSLLVYFLSFFKAHVVTFPSSSSFSHHKNSTSKSSFVASQFPFSNLSLSSSSIRTPSFIVHSQQDTSIVEEDPRFICVEPEPRFQGPDIWNTTWYPKASDHVNTAKTWYIVDATDKILGRLASTIANHIRGKNLVTYTPSVDMGAFVIVINAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQNRIPERIIEHAVRGMLPKGRVSSTKFNVFPRDLYSRHVKMDH*